genome.fa.s1520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1520
Parameters: 2 7 7 80 10 50 1000
Length:  65914

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2198--2330	51	2.6	52	83	5	171	29	17	11	42	1.84
4226--4303	38	2.1	38	97	0	147	28	15	21	34	1.94
5851--5875	1	25.0	1	100	0	50	100	0	0	0	0.00
8474--8813	72	4.7	73	76	9	324	54	9	3	33	1.48
8758--8883	60	2.1	60	92	0	207	50	9	0	38	1.40
8684--8940	133	2.0	129	83	6	320	50	9	2	36	1.50
12122--12183	28	2.2	28	91	5	99	19	6	19	54	1.65
12180--12225	24	1.9	24	90	0	74	21	6	28	43	1.77
13191--13529	72	4.7	71	75	10	271	54	9	3	33	1.48
13474--13599	60	2.1	60	92	0	207	50	9	0	38	1.40
13400--13642	133	1.8	134	84	5	332	51	10	2	35	1.49
13533--13672	71	2.0	71	85	7	194	52	7	1	38	1.40
13549--13694	69	2.1	71	79	8	156	55	6	0	36	1.32
14158--14208	25	2.0	26	88	3	77	58	5	0	35	1.22
14116--14308	74	2.7	73	89	4	286	53	9	0	36	1.37
14732--14921	73	2.6	72	78	7	181	51	8	1	38	1.43
15072--15170	50	2.0	49	84	2	126	29	18	22	30	1.97
18080--18135	18	3.1	18	92	0	94	25	19	28	26	1.99
18775--18985	117	1.8	117	83	6	284	33	9	10	45	1.73
20737--20777	5	8.0	5	86	2	55	46	0	0	53	1.00
20736--20776	10	4.0	10	90	3	64	48	0	0	51	1.00
20737--20777	20	2.0	21	95	4	75	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20749--20893	50	2.9	51	76	18	135	51	0	0	48	1.00
22134--22184	26	1.9	27	88	4	77	66	0	1	31	1.03
22115--22201	28	3.1	28	73	15	74	62	0	2	35	1.08
22210--22258	13	3.6	13	81	8	53	51	0	0	48	1.00
22313--22483	92	1.9	90	82	4	218	29	19	16	35	1.93
22781--22812	14	2.3	14	94	0	55	28	0	3	68	1.04
26808--26853	24	1.9	24	91	8	76	45	28	8	17	1.78
26858--26940	28	3.0	28	96	0	148	49	19	10	20	1.78
31486--31568	28	3.0	28	96	0	148	49	19	10	20	1.78
31588--31626	19	2.1	19	90	0	60	35	35	17	10	1.84
31997--32021	11	2.3	11	100	0	50	16	0	0	84	0.63
33279--33401	22	5.8	22	69	13	96	49	1	2	46	1.24
33395--33434	20	2.1	18	86	9	53	40	0	5	55	1.22
36733--36795	32	2.0	32	87	6	92	26	26	28	17	1.98
37063--37122	29	2.1	29	90	0	93	50	1	5	43	1.34
37784--37844	13	4.8	13	85	2	79	47	4	1	45	1.34
37784--37845	2	29.5	2	80	9	70	46	4	1	46	1.33
40312--40361	24	2.1	24	88	0	73	38	18	36	8	1.80
43210--43469	50	5.2	50	91	0	414	31	20	19	29	1.97
47008--47082	20	3.8	20	78	0	87	34	13	12	40	1.81
47008--47085	40	2.0	39	87	2	111	34	12	12	39	1.82
50552--51009	32	14.3	32	93	1	740	16	18	33	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55988--56012	13	1.9	13	100	0	50	36	16	16	32	1.90
56075--56099	13	1.9	13	100	0	50	32	16	16	36	1.90
56108--56288	52	3.5	52	98	0	344	34	19	17	28	1.95
60419--60445	10	2.7	10	100	0	54	0	0	22	77	0.76

Tables:   1

The End!