Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1521
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76415
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Found at i:530 original size:27 final size:27
Alignment explanation
Indices: 494--564 Score: 83
Period size: 27 Copynumber: 2.6 Consensus size: 27
484 AGCCACCCAT
494 TGTTGTGTCAAAAATGGTGGTTAT-TTTG
1 TGTT-TGTCAAAAATGGTGGTT-TCTTTG
522 TGTTTGTC-AAAATGGTGGTTTCCTTTG
1 TGTTTGTCAAAAATGGTGGTTT-CTTTG
* *
549 TATTTGTCAAATATGG
1 TGTTTGTCAAAAATGG
565 AGGCTTGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
25 1 0.03
26 12 0.32
27 15 0.39
28 10 0.26
ACGTcount: A:0.21, C:0.07, G:0.25, T:0.46
Consensus pattern (27 bp):
TGTTTGTCAAAAATGGTGGTTTCTTTG
Found at i:11741 original size:27 final size:27
Alignment explanation
Indices: 11699--11804 Score: 149
Period size: 27 Copynumber: 3.9 Consensus size: 27
11689 TGGCATTCCT
* * *
11699 TTTTAAGTCCATAACTCCATGGCAACC
1 TTTTAAATCCACAACTCCGTGGCAACC
11726 TTTTAAATCCACAACTCCGTGGCAACC
1 TTTTAAATCCACAACTCCGTGGCAACC
*
11753 TTTTAAGTCCACAACTCCGTGGCAACC
1 TTTTAAATCCACAACTCCGTGGCAACC
* *
11780 TTATAAAGACCACAACTCCGTGGCA
1 TTTTAAA-TCCACAACTCCGTGGCA
11805 GCCCTTTCTA
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 55 0.77
28 16 0.23
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.25
Consensus pattern (27 bp):
TTTTAAATCCACAACTCCGTGGCAACC
Found at i:11776 original size:54 final size:55
Alignment explanation
Indices: 11699--11804 Score: 169
Period size: 54 Copynumber: 1.9 Consensus size: 55
11689 TGGCATTCCT
* * *
11699 TTTTAAGTCCATAACTCCATGGCAACCTTTTAAA-TCCACAACTCCGTGGCAACC
1 TTTTAAGTCCACAACTCCATGGCAACCTTATAAAGACCACAACTCCGTGGCAACC
*
11753 TTTTAAGTCCACAACTCCGTGGCAACCTTATAAAGACCACAACTCCGTGGCA
1 TTTTAAGTCCACAACTCCATGGCAACCTTATAAAGACCACAACTCCGTGGCA
11805 GCCCTTTCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
54 31 0.66
55 16 0.34
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.25
Consensus pattern (55 bp):
TTTTAAGTCCACAACTCCATGGCAACCTTATAAAGACCACAACTCCGTGGCAACC
Found at i:11801 original size:28 final size:27
Alignment explanation
Indices: 11711--11824 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
11701 TTAAGTCCAT
* *
11711 AACTCCATGGCAACCTTTTAAA-TCCAC
1 AACTCCGTGGCAACC-TTTAAAGACCAC
* *
11738 AACTCCGTGGCAACCTTTTAAGTCCAC
1 AACTCCGTGGCAACCTTTAAAGACCAC
11765 AACTCCGTGGCAACCTTATAAAGACCAC
1 AACTCCGTGGCAACCTT-TAAAGACCAC
*
11793 AACTCCGTGGCAGCCCTTTCTAAAGACCAC
1 AACTCCGTGGCA-ACC-TT-TAAAGACCAC
11823 AA
1 AA
11825 GTCAAAGGCA
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
26 5 0.06
27 36 0.47
28 20 0.26
29 2 0.03
30 14 0.18
ACGTcount: A:0.32, C:0.33, G:0.13, T:0.22
Consensus pattern (27 bp):
AACTCCGTGGCAACCTTTAAAGACCAC
Found at i:11854 original size:28 final size:28
Alignment explanation
Indices: 11734--12115 Score: 371
Period size: 28 Copynumber: 13.6 Consensus size: 28
11724 CCTTTTAAAT
* * * * *
11734 CCACAACTCCGTGGCAACCTTT-TAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
11761 CCACAACTCCGTGGCAACCTTAT-AAAGA
1 CCACAAGTCAGTGGCATCCTT-TCAAAGC
* * * *
11789 CCACAACTCCGTGGCAGCCCTTTCTAAAGA
1 CCACAAGTCAGTGGCA-TCCTTTC-AAAGC
**
11819 CCACAAGTCAAAGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
11847 CCACAAGTCAG-GGACA-CCTTTTCAAAGC
1 CCACAAGTCAGTGG-CATCC-TTTCAAAGC
* * * *
11875 CCAAAAGTCAGTGACACCCATTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
**
11903 CCACAAGTTGGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
11931 CCACAAATCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
11959 CCACAAGTTAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
11987 CCACAAGTCAGTGGCACCCTTTTAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
12015 TCACAAGTTC-GTGCCATCCTTTCAAAGC
1 CCACAAG-TCAGTGGCATCCTTTCAAAGC
* *
12043 CCACAAGTCAGTGACATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
12071 CCACAAGTCAGTGGCA-CTCTTTCAAAGC
1 CCACAAGTCAGTGGCATC-CTTTCAAAGC
*
12099 CCACAAGTTAGTGGCAT
1 CCACAAGTCAGTGGCAT
12116 GTATGTAGCA
Statistics
Matches: 304, Mismatches: 39, Indels: 22
0.83 0.11 0.06
Matches are distributed among these distances:
27 28 0.09
28 244 0.80
29 15 0.05
30 17 0.06
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.22
Consensus pattern (28 bp):
CCACAAGTCAGTGGCATCCTTTCAAAGC
Found at i:11884 original size:56 final size:56
Alignment explanation
Indices: 11831--15159 Score: 3469
Period size: 56 Copynumber: 58.9 Consensus size: 56
11821 ACAAGTCAAA
* * *
11831 GGCATCCTTTCAAAGCCCACAAGTCAG-GGACACCTTTTCAAAGCCCAAAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGG-CATCTTTTCAAAGCCCACAAGTTAGT
* * * ** * * *
11887 GACACCCATTCAAAGCCCACAAGTTGGTGGCATCCTTTCAAAGCCCACAAATCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * *
11943 GGCATCTTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
11999 GGCACCCTTTTAAAGCTCACAAGTTC-GTGCCATCCTTTCAAAGCCCACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAG-TCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* *
12055 GACATCTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCT-TTTCAAAGCCCACAAGTTAGT
* *
12111 GGCATGTATGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAGCTCACAAGTT
1 GGC----A--T-----CCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTT
12176 AGT
54 AGT
* * *
12179 GGCAT-TTTTCCAAAGCCCACAAGTCAGTGGTACCCTTTT-AAAGCCCACAAGTTAGT
1 GGCATCCTTT-CAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTTAGT
* * * *
12235 GGCATCCTTTCAAAGCCCACAAGTTAATGGCTTCTTTTCAAAGCCCACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * *
12291 GGCACCCTTTCAAAGCCCACAAGTAAGTGGCATCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
*
12347 GGCATCCTTTCAAAGCCCACAAGTCAGTAGCA-CTCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCT-TTTCAAAGCCCACAAGTTAGT
* *
12403 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCGAAGACCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
12459 GGCACCCTTTCAAAGCCTACAAGTCACTGGCATCATTTCAAAGCTCACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * *
12515 GGCATCTCTTTAAAAGCCCAAAAGTCAGTGGCATCTCTTCAAAAGCCCACAAGTCAGT
1 GGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTTAGT
* * *
12573 GGCATCTTTTCAAAGCCCA-AAGTCAGCGGCA-CATTTTTAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-TTTTCAAAGCCCACAAGTTAGT
*
12628 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTATCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
12684 GGCA-CCTTTTCAAAGCCCACAAGTTAATGGCATCCTTTCAAATCCCACAAGTCAGT
1 GGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
12740 GGCACCCTTTTAAAGCCCACAAGTTAGTAGCATCTTTTCAAAACTCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * ** *
12796 GGTATCCTTTCAAAGCCCAGAAGTTAGTGGCATCTTTTCAAAGCAAACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * *
12852 GGCAT-CTCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAACCCATAAATGAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
12909 AGCACCCATTCAAAAG-CCACAAGTTAGTGACATCTTTTCAAA-CCCATAAGTTAGT
1 GGCATCCTTTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * *
12964 GGCAT-CTCTTCAAAAGACCACAAGTCAGTGGCATCTCTTCAAAAGACCACAAGTCAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTTAGT
* * * *
13022 GGCATCCCTTCAAAAGACCACAGGTTAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * *
13079 GGCATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
13135 GGCATCCTTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCACGAGTCAAT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
13191 GGC-TTCTTCTCAAAGCTCACAAGTAAGTGGCACCCTTTCAAAGCCCACAAGTAAGT
1 GGCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* *
13247 GGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
13303 GACATCTTTTCAAAGCTCACAAGTCAGTAGCA-CTCTATCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCT-TTTCAAAGCCCACAAGTTAGT
* * * *
13359 GGCATCCTTTCAAAACCCACAAGTCAGTGGTATCTTTTCGAAGACCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * *
13415 GGCACCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCGAAGACCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
13471 GGCACCCTTTCAAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCTACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
13527 GGCAT-CTCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * *
13584 GGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTT-AAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTTAGT
* * * * ** *
13640 GGCATCCTTTCAAAACCCACAGGTTAGTGGCATCTCTTCAAAAGAACA-AAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTTAGT
* * * * * *
13696 GGCAT-CTCTTCAAAAGACCATAAGTTAGTGGCATCCTTTCAAAACCCACAAGTCAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * *
13753 GGAAT-CTTATCAAAGCCCATAAGTCAGTGGCACCTTTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTT-TCAAAGCCCACAAGTCAGTGGCATC-TTTTCAAAGCCCACAAGTTAGT
* * * *
13810 GGCATCCTTTCAAAGCCCACAAGTTAGTAGCACCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
13866 GGCATCCTTTCAAAACTCACAAGTCAGTGGTATCATTTCAAAGCGCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
13922 AGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCTCTTCAAAAACCCATAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTTAGT
* * * * * * * *
13979 GGCATCTTTTAAAAGCCCATAAATGAATGGCACCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * * *
14035 GACATCTTTTCAAAACCCATAAGTCTGTGGCATCTCTTCAAAAGACCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTTAGT
* * * *
14092 GGCAT-CTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * *
14149 GGCATCTTTTCAAAGCCCACAAGTCAGTGGCA-CGCTTTCAAAGCCCACAAGTTTGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-TTTTCAAAGCCCACAAGTTAGT
* * *
14205 GGCATCCTTTCAAAGCCCATAAGTGAGT-GCATCCTTTCAAAGCCCACAAGTCTA-T
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGT-TAGT
* * * *
14260 GGCAT-CTCTTCAAAAAG-CCAAAAGTCAATGGCATCTTTTCAAAGCCCCCAAGTCAGT
1 GGCATCCT-TTC--AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
14317 GGCACCCTTT-AAAACCTACGAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
14372 GACAT-CTCTTCAAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAAG-TAAT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCT-TTTCAAAGCCCACAAGTTAGT
* * * * * *
14429 GGCAACTTTTCAAAACCCGCAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * ** * *
14485 GGCATCCTTTTAAAGCCCACAAGTTAGTAACACCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
14541 GGTATCCTTTTAAAGCCCACAAGTCAGTGGCATCTTTTCAGAGGCCACAAGTCAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
14597 GGCA-CCTTTTCAATGCCCATAAGTTAGTGGCATCCTTTCAAAGCTCACAAGTTAGT
1 GGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * *
14653 GGCAT-CTCTTCAAAAGCCTACAAGTCTGTGGCATATTTTCAAAGCCCACAAGTCAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
14710 GGCA-CATTTTCAAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGT
1 GGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * * *
14766 GGCAT-CTCTTCAAAAGACCACAAGTTAGTGGCATCTCTTCAAAAGACCACAAATCAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCTTTTC-AAAGCCCACAAGTTAGT
* *
14824 GGCAT-CTCTTCAAAAGACCACAAGTCAGTGGCATTCTTTT-AAAGCACACAAGTTAGT
1 GGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTTAGT
* * *
14881 GGCAT-ATCTTCAAAGCCCACAAGTCAGTGGCATATTTTCAAAGCCCATAAGTTAGT
1 GGCATCCT-TTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * *
14937 GGCATTCTTTCAAAACCCACAAGTCAGCGGCATCCTTTCAAAGCCCACAAGTTAGT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
* * * * *
14993 GGCACCCTTTCAAAGCCCACAAGTCAATGGCATACTCTTTCAAAGCCTACACAAATCAAT
1 GGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CT-TTTCAAAGCC--CACAAGTTAGT
* * * * *
15053 GGCA-CTCTTCCAAAGCCCATAAGTCAGTGGCACCCTTTT-AAAGCCTACAAGTCAGT
1 GGCATC-CTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTTAGT
* * * *
15109 GGTA-CCTCTTCGAAGCCCACAAGTCAATGGCATCCCCTTTCAAAGCCCACA
1 GGCATCCT-TTCAAAGCCCACAAGTCAGTGGCAT--CTTTTCAAAGCCCACA
15160 CAAGTCGGTG
Statistics
Matches: 2761, Mismatches: 414, Indels: 194
0.82 0.12 0.06
Matches are distributed among these distances:
54 8 0.00
55 179 0.06
56 1747 0.63
57 538 0.19
58 188 0.07
59 10 0.00
60 38 0.01
62 2 0.00
64 1 0.00
67 29 0.01
68 21 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (56 bp):
GGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGT
Found at i:11921 original size:84 final size:84
Alignment explanation
Indices: 11734--15159 Score: 3075
Period size: 84 Copynumber: 40.4 Consensus size: 84
11724 CCTTTTAAAT
* * * * * * * * * *
11734 CCACAACTCCGTGGCAACCTTT-TAAGTCCACAACTCCGTGGCAACCTTAT-AAAGACCACAACT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGC-ACCTTTTCAAAGCCCACAAGT
* *
11797 CCGTGGCAGCCCTTTCTAAAGA
65 CAGTGGCA-CCCTTTC-AAAGC
** *
11819 CCACAAGTCAAAGGCATCCTTTCAAAGCCCACAAGTCAG-GGACACCTTTTCAAAGCCCAAAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG-CACCTTTTCAAAGCCCACAAGT
* *
11883 CAGTGACACCCATTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
** * * *
11903 CCACAAGTTGGTGGCATCCTTTCAAAGCCCACAAATCAGTGGCATCTTTTCAAAGCCCACAAGTT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
* *
11968 AGTGGCATCTTTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
* * * *
11987 CCACAAGTCAGTGGCACCCTTTTAAAGCTCACAAGTTC-GTGCCATCC-TTTCAAAGCCCACAAG
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAG-TCAGTGGCA-CCTTTTCAAAGCCCACAAG
* * *
12050 TCAGTGACATCTTTTCAAAGC
64 TCAGTGGCACCCTTTCAAAGC
*
12071 CCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTATGTAGCACCCTTTCAA
1 CCACAAGTCAGTGGCATC-CTTTCAAAGCCCAC-A---AGT--CA-G--TG--GCACCTTTTCAA
*
12135 AGCCCACAAGTCAGTGGCA-TCTCTTCAAAAGC
54 AGCCCACAAGTCAGTGGCACCCT-TTC-AAAGC
* * * *
12167 TCACAAGTTAGTGGCAT-TTTTCCAAAGCCCACAAGTCAGTGGTACCCTTTT-AAAGCCCACAAG
1 CCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAG
* *
12230 TTAGTGGCATCCTTTCAAAGC
64 TCAGTGGCACCCTTTCAAAGC
* * * * * *
12251 CCACAAGTTAATGGCTTCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTA
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
*
12316 AGTGGCATCCTTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
* *
12335 CCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTAGCA-CTCTTTCAAAGCCCACAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCT-TTTCAAAGCCCACAAGT
* *
12399 TAGTGGCATCCTTTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
* * * * * *
12419 CCACAAGTCAGTGGCATCTTTTCGAAGACCACAAGTTAGTGGCACCCTTTCAAAGCCTACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
* * *
12484 ACTGGCATCATTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
* * * * *
12503 TCACAAGTCAGTGGCATCTCTTTAAAAGCCCAAAAGTCAGTGGCATCTCTTCAAAAGCCCACAAG
1 CCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAG
* *
12568 TCAGTGGCATCTTTTCAAAGC
64 TCAGTGGCACCCTTTCAAAGC
* * * *
12589 CCA-AAGTCAGCGGCA-CATTTTTAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAG
1 CCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAG
*
12651 TCAGTGGCA-TCTTATCAAAGC
64 TCAGTGGCACCCTT-TCAAAGC
* * * *
12672 CCACAAGTTAGTGGCA-CCTTTTCAAAGCCCACAAGTTAATGGCATCC-TTTCAAATCCCACAAG
1 CCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAG
*
12735 TCAGTGGCACCCTTTTAAAGC
64 TCAGTGGCACCCTTTCAAAGC
* * * * * * * *
12756 CCACAAGTTAGTAGCATCTTTTCAAAACTCACAAGTTAGTGGTATCC-TTTCAAAGCCCAGAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGT
* * *
12820 TAGTGGCATCTTTTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
** * * * *
12840 AAACAAGTCAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAACCCATAAA
1 CCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAG
* * *
12904 TGAGTAGCACCCATTCAAAAG-
64 TCAGTGGCACCCTTTC-AAAGC
* * * * * * * *
12925 CCACAAGTTAGTGACATCTTTTCAAA-CCCATAAGTTAGTGGCATCTCTTCAAAAGACCACAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGT
* *
12989 CAGTGGCA-TCTCTTCAAAAGA
65 CAGTGGCACCCT-TTC-AAAGC
* * * * *
13010 CCACAAGTCAGTGGCATCCCTTCAAAAGACCACAGGTTAGTGGCATCTTTTCAAAGCCCACAAGT
1 CCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGT
* * *
13075 TAGTGGCATCTTTTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
* * *
13095 CCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCATAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGT
*
13159 CAGTGGCATCCTTTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
* * * * * *
13179 CCACGAGTCAATGGC-TTCTTCTCAAAGCTCACAAGTAAGTGGCACCCTTTCAAAGCCCACAAGT
1 CCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGT
* *
13243 AAGTGGCATCCTTTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
* * * * *
13263 CCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGACATCTTTTCAAAGCTCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
* * *
13328 AGTAGCACTCTATCAAAGC
66 AGTGGCACCCTTTCAAAGC
* * * * * * *
13347 CCACAAGTTAGTGGCATCCTTTCAAAACCCACAAGTCAGTGGTATCTTTTCGAAGACCACAAGTT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
13412 AGTGGCACCCTTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
* * * * * * *
13431 CCACAAGTCAGTGGCATCTTTTCGAAGACCACAAGTTAGTGGCACCCTTTCAAAGCCTACAAGTT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
*
13496 AGTGGCATCCTTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
* *
13515 CTACAAGTCAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAG
1 CCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAG
* *
13579 TTAGTGGCACCCTTTTAAAGC
64 TCAGTGGCACCCTTTCAAAGC
* * * * *
13600 CCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAACCCACAGGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGT
* * *
13664 TAGTGGCA-TCTCTTCAAAAGA
65 CAGTGGCACCCT-TTC-AAAGC
* * * * *
13685 ACA-AAGTCAGTGGCAT-CTCTTCAAAAGACCATAAGTTAGTGGCATCC-TTTCAAAACCCACAA
1 CCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAA
**
13747 GTCAGTGG-AATCTTATCAAAGC
63 GTCAGTGGCACCCTT-TCAAAGC
* *
13769 CCATAAGTCAGTGGCA-CCTTTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAA
1 CCACAAGTCAGTGGCATCC--TTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAA
* *
13832 GTTAGTAGCACCCTTTCAAAGC
63 GTCAGTGGCACCCTTTCAAAGC
* * * * * * * *
13854 CCACAAGTTAGTGGCATCCTTTCAAAACTCACAAGTCAGTGGTATCATTTCAAAGCGCACAAGTT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
* * *
13919 AGTAGCATCTTTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
* * * * * * *
13938 CCACAAGTCAGTGGCAT-CTCTTCAAAAACCCATAAGTTAGTGGCATCTTTTAAAAGCCCATAAA
1 CCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAG
* *
14002 TGAATGGCACCCTTTCAAAGC
64 TCAGTGGCACCCTTTCAAAGC
* * * * * * * * *
14023 CCACAAGTTAGTGACATCTTTTCAAAACCCATAAGTCTGTGGCATCTCTTCAAAAGACCACAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGT
* * *
14088 TAGTGGCA-TCTCTTCAAAAGA
65 CAGTGGCACCCT-TTC-AAAGC
* * * *
14109 CCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
*
14174 AGTGGCACGCTTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
** * *
14193 CCACAAGTTTGTGGCATCCTTTCAAAGCCCATAAGTGAGT-GCATCC-TTTCAAAGCCCACAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGT
*
14256 CTA-TGGCA-TCTCTTCAAAAAG-
65 C-AGTGGCACCCT-TTC--AAAGC
* * * * * * * * *
14277 CCAAAAGTCAATGGCATCTTTTCAAAGCCCCCAAGTCAGTGGCACCCTTT-AAAACCTACGAGTT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
* *
14341 AGTGGCATCTTTTCAAAGC
66 AGTGGCACCCTTTCAAAGC
* * * * *
14360 CCACAAGTCAGTGACAT-CTCTTCAAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAA
1 CCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCT-TTTCAAAGCCCACAA
* * * *
14424 GT-AATGGCAACTTTTCAAAAC
63 GTCAGTGGCACCCTTTCAAAGC
* * *
14445 CCGCAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTT-AAAGCCCACAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAGT
* **
14509 TAGTAACACCCTTTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
* * * * * *
14529 CCACAAGTTAGTGGTATCCTTTTAAAGCCCACAAGTCAGTGGCATCTTTTCAGAGGCCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
* *
14594 AGTGGCACCTTTTCAATGC
66 AGTGGCACCCTTTCAAAGC
* * * * * * *
14613 CCATAAGTTAGTGGCATCCTTTCAAAGCTCACAAGTTAGTGGCATCTCTTCAAAAGCCTACAAGT
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAAGT
* ***
14678 CTGTGGCATATTTTCAAAGC
65 CAGTGGCACCCTTTCAAAGC
* * *
14698 CCACAAGTCAGTGGCA-CATTTTCAAAGCCTACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAG
1 CCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACAAG
* *
14761 TCAGTGGCA-TCTCTTCAAAAGA
64 TCAGTGGCACCCT-TTC-AAAGC
* * * * * *
14783 CCACAAGTTAGTGGCAT-CTCTTCAAAAGACCACAAATCAGTGGCATCTCTTCAAAAGACCACAA
1 CCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCACCTTTTC-AAAGCCCACAA
** *
14847 GTCAGTGGCATTCTTTTAAAGC
63 GTCAGTGGCACCCTTTCAAAGC
* * * ** *
14869 ACACAAGTTAGTGGCAT-ATCTTCAAAGCCCACAAGTCAGTGGCATATTTTCAAAGCCCATAAGT
1 CCACAAGTCAGTGGCATCCT-TTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGT
* ** *
14933 TAGTGGCATTCTTTCAAAAC
65 CAGTGGCACCCTTTCAAAGC
* * *
14953 CCACAAGTCAGCGGCATCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTC
1 CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
* *
15018 AATGGCATACTCTTTCAAAGC
66 AGTGGC--ACCCTTTCAAAGC
* * * * *
15039 CTACACAAATCAATGGCA-CTCTTCCAAAGCCCATAAGTCAGTGGCACCCTTTT-AAAGCCTACA
1 C--CACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCA-CCTTTTCAAAGCCCACA
* *
15102 AGTCAGTGGTA-CCTCTTCGAAGC
62 AGTCAGTGGCACCCT-TTCAAAGC
*
15125 CCACAAGTCAATGGCATCCCCTTTCAAAGCCCACA
1 CCACAAGTCAGTGGCAT--CCTTTCAAAGCCCACA
15160 CAAGTCGGTG
Statistics
Matches: 2781, Mismatches: 443, Indels: 233
0.80 0.13 0.07
Matches are distributed among these distances:
82 9 0.00
83 140 0.05
84 1510 0.54
85 685 0.25
86 251 0.09
87 49 0.02
88 57 0.02
89 7 0.00
90 2 0.00
91 1 0.00
92 3 0.00
93 2 0.00
94 3 0.00
95 33 0.01
96 29 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (84 bp):
CCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACAAGTC
AGTGGCACCCTTTCAAAGC
Found at i:12202 original size:28 final size:28
Alignment explanation
Indices: 12129--15159 Score: 3074
Period size: 28 Copynumber: 107.5 Consensus size: 28
12119 TGTAGCACCC
*
12129 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12157 CTTCAAAAGCTCACAAGTTAGTGGCAT-T
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * *
12185 TTTCCAAAGCCCACAAGTCAGTGGTACCCT
1 TTT-CAAAGCCCACAAGTTAGTGGCA-TCT
*
12215 TTT-AAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12242 TTTCAAAGCCCACAAGTTAATGGCTTCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
12270 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12298 TTTCAAAGCCCACAAGTAAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
12326 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12354 TTTCAAAGCCCACAAGTCAGTAGCA-CT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
12381 CTTTCAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAGCCCACAAGTTAGTGGCATCT
*
12410 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
12438 TTTCGAAGACCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
12466 TTTCAAAGCCTACAAGTCACTGGCATCA
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12494 TTTCAAAGCTCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
12522 CTTTAAAAGCCCAAAAGTCAGTGGCATCT
1 -TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12551 CTTCAAAAGCCCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* *
12580 TTTCAAAGCCCA-AAGTCAGCGGCA-CAT
1 TTTCAAAGCCCACAAGTTAGTGGCATC-T
* *
12607 TTTTAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
12635 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12663 TATCAAAGCCCACAAGTTAGTGGCACCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12691 TTTCAAAGCCCACAAGTTAATGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
12719 TTTCAAATCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACAAGTTAGTGGCA-TCT
*
12748 TTT-AAAGCCCACAAGTTAGTAGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
12775 TTTCAAAACTCACAAGTTAGTGGTATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
12803 TTTCAAAGCCCAGAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
** *
12831 TTTCAAAGCAAACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12859 CTTCAAAAGCCCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * * * * * *
12888 TTTCAAAACCCATAAATGAGTAGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
12916 ATTCAAAAG-CCACAAGTTAGTGACATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
*
12944 TTTCAAA-CCCATAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
12971 CTTCAAAAGACCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * * *
13000 CTTCAAAAGACCACAAGTCAGTGGCATCC
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * *
13029 CTTCAAAAGACCACAGGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
13058 TTTCAAAGCCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
13086 TTTCAAAGCCCACAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
13114 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
13142 TTTCAAAGCCCATAAGTCAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
13170 TTTCAAAGCCCACGAGTCAATGGCTTCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * * *
13198 TCTCAAAGCTCACAAGTAAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
13226 TTTCAAAGCCCACAAGTAAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
13254 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
13282 TTTCAAAGCCCACAAGTTAGTGACATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
13310 TTTCAAAGCTCACAAGTCAGTAGCA-CT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
13337 CTATCAAAGCCCACAAGTTAGTGGCATCC
1 -TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
13366 TTTCAAAACCCACAAGTCAGTGGTATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
13394 TTTCGAAGACCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
13422 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
13450 TTTCGAAGACCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
13478 TTTCAAAGCCTACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
13506 TTTCAAAGCCTACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
13534 CTTCAAAAGCCCACAAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
*
13563 TTTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTTCAAAGCCCACAAGTTAGTGGCA-TCT
* *
13592 TTT-AAAGCCCACAAGTCAGTGGCACCCT
1 TTTCAAAGCCCACAAGTTAGTGGCA-TCT
*
13620 TTT-AAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
13647 TTTCAAAACCCACAGGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* ** *
13675 CTTCAAAAGAACA-AAGTCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * * *
13703 CTTCAAAAGACCATAAGTTAGTGGCATCC
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * *
13732 TTTCAAAACCCACAAGTCAGTGGAATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
13760 TATCAAAGCCCATAAGTCAGTGGCACCTT
1 TTTCAAAGCCCACAAGTTAGTGGCATC-T
*
13789 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
13817 TTTCAAAGCCCACAAGTTAGTAGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
13845 TTTCAAAGCCCACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * * *
13873 TTTCAAAACTCACAAGTCAGTGGTATCA
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
13901 TTTCAAAGCGCACAAGTTAGTAGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
13929 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
13957 CTTCAAAAACCCATAAGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * * * * * *
13986 TTTAAAAGCCCATAAATGAATGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
14014 TTTCAAAGCCCACAAGTTAGTGACATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
14042 TTTCAAAACCCATAAGTCT-GTGGCATCT
1 TTTCAAAGCCCACAAGT-TAGTGGCATCT
* *
14070 CTTCAAAAGACCACAAGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * * *
14099 CTTCAAAAGACCACAGGTTAGTGGCATCC
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
14128 TTTCAAAGCCCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
14156 TTTCAAAGCCCACAAGTCAGTGGCA-CGC
1 TTTCAAAGCCCACAAGTTAGTGGCATC-T
* *
14184 TTTCAAAGCCCACAAGTTTGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
14212 TTTCAAAGCCCATAAGTGAGT-GCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
14239 TTTCAAAGCCCACAAGTCTA-TGGCATCT
1 TTTCAAAGCCCACAAGT-TAGTGGCATCT
* * * *
14267 CTTCAAAAAG-CCAAAAGTCAATGGCATCT
1 TTTC--AAAGCCCACAAGTTAGTGGCATCT
* * * *
14296 TTTCAAAGCCCCCAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
14324 TTT-AAAACCTACGAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
14351 TTTCAAAGCCCACAAGTCAGTGACATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
14379 CTTCAAAAGACCACAAGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * *
14408 CTTTAAAAGCCCACAAG-TAATGGCAACT
1 -TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * * *
14436 TTTCAAAACCCGCAAGTCAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
14464 TTTCAAAGCCCACAAGTTAGTGGCATCCT
1 TTTCAAAGCCCACAAGTTAGTGGCAT-CT
** * *
14493 TTT-AAAGCCCACAAGTTAGTAACACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
14520 TTTCAAAGCCCACAAGTTAGTGGTATCCT
1 TTTCAAAGCCCACAAGTTAGTGGCAT-CT
*
14549 TTT-AAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
14576 TTTCAGAGGCCACAAGTCAGTGGCACCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
14604 TTTCAATGCCCATAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
14632 TTTCAAAGCTCACAAGTTAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
14660 CTTCAAAAGCCTACAAGTCT-GTGGCATAT
1 TTTC-AAAGCCCACAAGT-TAGTGGCATCT
*
14689 TTTCAAAGCCCACAAGTCAGTGGCA-CAT
1 TTTCAAAGCCCACAAGTTAGTGGCATC-T
* *
14717 TTTCAAAGCCTACAAGTTAGTGGCATCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
14745 TTTCAAAGCCCACAAGTCAGTGGCATCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
14773 CTTCAAAAGACCACAAGTTAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * * *
14802 CTTCAAAAGACCACAAATCAGTGGCATCT
1 TTTC-AAAGCCCACAAGTTAGTGGCATCT
* * *
14831 CTTCAAAAGACCACAAGTCAGTGGCATTCT
1 TTTC-AAAGCCCACAAGTTAGTGGCA-TCT
* *
14861 TTT-AAAGCACACAAGTTAGTGGCATAT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * *
14888 CTTCAAAGCCCACAAGTCAGTGGCATAT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
*
14916 TTTCAAAGCCCATAAGTTAGTGGCAT-T
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * *
14943 CTTTCAAAACCCACAAGTCAGCGGCATCC
1 -TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
14972 TTTCAAAGCCCACAAGTTAGTGGCACCC
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* *
15000 TTTCAAAGCCCACAAGTCAATGGCATACT
1 TTTCAAAGCCCACAAGTTAGTGGCAT-CT
* * *
15029 CTTTCAAAGCCTACACAAATCAATGGCA-CT
1 -TTTCAAAGCC--CACAAGTTAGTGGCATCT
* * * *
15059 CTTCCAAAGCCCATAAGTCAGTGGCACCCT
1 -TTTCAAAGCCCACAAGTTAGTGGCA-TCT
* * * *
15089 TTT-AAAGCCTACAAGTCAGTGGTACCT
1 TTTCAAAGCCCACAAGTTAGTGGCATCT
* * * * *
15116 CTTCGAAGCCCACAAGTCAATGGCATCCCC
1 TTTCAAAGCCCACAAGTTAGTGGCAT--CT
15146 TTTCAAAGCCCACA
1 TTTCAAAGCCCACA
15160 CAAGTCGGTG
Statistics
Matches: 2520, Mismatches: 417, Indels: 130
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.00
27 142 0.06
28 1821 0.72
29 489 0.19
30 53 0.02
32 14 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (28 bp):
TTTCAAAGCCCACAAGTTAGTGGCATCT
Found at i:15343 original size:25 final size:25
Alignment explanation
Indices: 15315--15389 Score: 77
Period size: 25 Copynumber: 3.2 Consensus size: 25
15305 ATTAGCTCAA
15315 TGTCGCTAGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
* * * *
15340 TGTC-C-A-CCTT-TATTAGCTCAA
1 TGTCGCTAGCCTTGAATCAGCACAT
*
15361 TGTCGCTGGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
15386 TGTC
1 TGTC
15390 CACTTTTCCC
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
21 11 0.30
22 5 0.14
23 1 0.03
24 5 0.14
25 15 0.41
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (25 bp):
TGTCGCTAGCCTTGAATCAGCACAT
Found at i:15354 original size:46 final size:46
Alignment explanation
Indices: 15275--15432 Score: 228
Period size: 46 Copynumber: 3.4 Consensus size: 46
15265 TCCGATATCA
* * *
15275 CTGGCATTGAATCAGCATATTG-GCACCTTTATTAGCTCAATGTCG
1 CTGGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATGTCG
*
15320 CTAGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATGTCG
1 CTGGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATGTCG
* *
15366 CTGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATGTCG
1 CTGGCCTTGAATCAGCACATTGTCCACCTTT--ATTAGCTCAATGTCG
*
15414 CTGGCCTTAAATCAGCACA
1 CTGGCCTTGAATCAGCACA
15433 ATGTTAACTT
Statistics
Matches: 102, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
45 19 0.19
46 51 0.50
48 32 0.31
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (46 bp):
CTGGCCTTGAATCAGCACATTGTCCACCTTTATTAGCTCAATGTCG
Found at i:15364 original size:21 final size:22
Alignment explanation
Indices: 15297--15366 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
15287 CAGCATATTG
15297 GCACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
* * * *
15319 GCTAGCCTTGAATCAGCACATTGTC
1 GC-A-CCTT-TATTAGCTCAATGTC
15344 -CACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
15365 GC
1 GC
15367 TGGCCTTGAA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 11 0.31
22 7 0.19
23 2 0.06
24 5 0.14
25 11 0.31
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (22 bp):
GCACCTTTATTAGCTCAATGTC
Found at i:15427 original size:48 final size:48
Alignment explanation
Indices: 15306--15483 Score: 227
Period size: 48 Copynumber: 3.8 Consensus size: 48
15296 GGCACCTTTA
* * * *
15306 TTAGCTCAATGTCGCTAGCCTTGAATCAGCACATTGTCCACCTTT--A
1 TTAGCTCAATGTCGCTGGCCTTAAATCAGCACATTGTCCACTTTTCCC
*
15352 TTAGCTCAATGTCGCTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTAAATCAGCACATTGTCCACTTTTCCC
* **
15400 TTAGCTCAATGTCGCTGGCCTTAAATCAGCACAATGTTAACTTTTCCC
1 TTAGCTCAATGTCGCTGGCCTTAAATCAGCACATTGTCCACTTTTCCC
* * *
15448 TTAGCTCGATGTCGTTGGCCTTGAAAT-GGCACATTG
1 TTAGCTCAATGTCGCTGGCCTT-AAATCAGCACATTG
15484 GTACTCTTCT
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
46 43 0.36
48 71 0.60
49 4 0.03
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (48 bp):
TTAGCTCAATGTCGCTGGCCTTAAATCAGCACATTGTCCACTTTTCCC
Found at i:16243 original size:40 final size:40
Alignment explanation
Indices: 16180--16293 Score: 203
Period size: 40 Copynumber: 2.9 Consensus size: 40
16170 TTTTACCCAG
16180 ATGTATCGATACAGTT-TTCAATGTATCGATACATGTATGA
1 ATGTATCGATACA-TTCTTCAATGTATCGATACATGTATGA
*
16220 ATGTATCGATACATTCTTTAATGTATCGATACATGTATGA
1 ATGTATCGATACATTCTTCAATGTATCGATACATGTATGA
16260 ATGTATCGATACATTCTTCAATGTATCGATACAT
1 ATGTATCGATACATTCTTCAATGTATCGATACAT
16294 TCTATTTTTT
Statistics
Matches: 71, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
39 2 0.03
40 69 0.97
ACGTcount: A:0.32, C:0.14, G:0.15, T:0.39
Consensus pattern (40 bp):
ATGTATCGATACATTCTTCAATGTATCGATACATGTATGA
Found at i:16336 original size:51 final size:49
Alignment explanation
Indices: 16259--16435 Score: 201
Period size: 51 Copynumber: 3.7 Consensus size: 49
16249 TACATGTATG
16259 AATGTATCGATACATTCTTCAATGTATCGATACATTCTATTTTTTTACCC
1 AATGTATCGATACATTCTTCAATGTATCGATACATTCTATTTTTTTA-CC
* * *
16309 AGATGTATCGATACATTTTTTAATGTATCGATACA-TGTA------TA--
1 A-ATGTATCGATACATTCTTCAATGTATCGATACATTCTATTTTTTTACC
* *
16350 AATGTATCGATACATTCTTCAATGTATCGTTACATTCTATCTTTTTTTCC
1 AATGTATCGATACATTCTTCAATGTATCGATACATTCTAT-TTTTTTACC
*
16400 AAATGTATCGATACATTTTTCAATGTATCGATACAT
1 -AATGTATCGATACATTCTTCAATGTATCGATACAT
16436 CTAGTTAAAA
Statistics
Matches: 105, Mismatches: 10, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
40 30 0.29
41 4 0.04
44 2 0.02
48 1 0.01
50 4 0.04
51 64 0.61
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (49 bp):
AATGTATCGATACATTCTTCAATGTATCGATACATTCTATTTTTTTACC
Found at i:16375 original size:91 final size:91
Alignment explanation
Indices: 16219--16435 Score: 364
Period size: 91 Copynumber: 2.4 Consensus size: 91
16209 TACATGTATG
* *
16219 AATGTATCGATACATTCTTTAATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGT
1 AATGTATCGATACATTTTTTAATGTATCGATACATGTATAAATGTATCGATACATTCTTCAATGT
16284 ATCGATACATTCTAT-TTTTTTACCCA
66 ATCGATACATTCTATCTTTTTT-CCCA
*
16310 GATGTATCGATACATTTTTTAATGTATCGATACATGTATAAATGTATCGATACATTCTTCAATGT
1 AATGTATCGATACATTTTTTAATGTATCGATACATGTATAAATGTATCGATACATTCTTCAATGT
* *
16375 ATCGTTACATTCTATCTTTTTTTCCA
66 ATCGATACATTCTATCTTTTTTCCCA
*
16401 AATGTATCGATACATTTTTCAATGTATCGATACAT
1 AATGTATCGATACATTTTTTAATGTATCGATACAT
16436 CTAGTTAAAA
Statistics
Matches: 118, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
91 112 0.95
92 6 0.05
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (91 bp):
AATGTATCGATACATTTTTTAATGTATCGATACATGTATAAATGTATCGATACATTCTTCAATGT
ATCGATACATTCTATCTTTTTTCCCA
Found at i:16386 original size:20 final size:20
Alignment explanation
Indices: 16180--16387 Score: 163
Period size: 20 Copynumber: 9.8 Consensus size: 20
16170 TTTTACCCAG
16180 ATGTATCGATACAGTT-TTCA
1 ATGTATCGATACA-TTCTTCA
* *
16200 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
*
16220 ATGTATCGATACATTCTTTA
1 ATGTATCGATACATTCTTCA
* *
16240 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
16260 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
16280 ATGTATCGATACATTCTATTTTTTTACCCA
1 ATGTATCGATACATTC-------TT---CA
* *
16310 GATGTATCGATACATTTTTTA
1 -ATGTATCGATACATTCTTCA
* *
16331 ATGTATCGATACATGT-ATAA
1 ATGTATCGATACAT-TCTTCA
16351 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
*
16371 ATGTATCGTTACATTCT
1 ATGTATCGATACATTCT
16388 ATCTTTTTTT
Statistics
Matches: 156, Mismatches: 15, Indels: 34
0.76 0.07 0.17
Matches are distributed among these distances:
19 4 0.03
20 128 0.82
21 3 0.02
24 2 0.01
27 2 0.01
30 2 0.01
31 15 0.10
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:16418 original size:21 final size:20
Alignment explanation
Indices: 16394--16435 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
16384 TTCTATCTTT
16394 TTTTCCAAATGTATCGATACA
1 TTTTCC-AATGTATCGATACA
*
16415 TTTTTCAATGTATCGATACA
1 TTTTCCAATGTATCGATACA
16435 T
1 T
16436 CTAGTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.43
Consensus pattern (20 bp):
TTTTCCAATGTATCGATACA
Found at i:20107 original size:23 final size:23
Alignment explanation
Indices: 20079--20135 Score: 73
Period size: 22 Copynumber: 2.5 Consensus size: 23
20069 TTATAATAAC
20079 TTAAACTCGATTTAATCCGAATA-
1 TTAAACTCGATTTAATCCGAA-AG
* *
20102 TTAAACTC-AATTAATTCGAAAG
1 TTAAACTCGATTTAATCCGAAAG
20124 TTAAACTCGATT
1 TTAAACTCGATT
20136 GCTCTGTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
21 1 0.03
22 18 0.62
23 10 0.34
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (23 bp):
TTAAACTCGATTTAATCCGAAAG
Found at i:22702 original size:41 final size:41
Alignment explanation
Indices: 22643--22724 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
22633 CAAAGACAAC
* *
22643 GGAAATCAATTGGAGTAACTTTACA-AGTGATGGTATTTGAA
1 GGAAATCAATTGAAGTAACTTTACATA-TGATAGTATTTGAA
22684 GGAAATCAATT-AACGTAACTTTACATATGATAGTATTTGAA
1 GGAAATCAATTGAA-GTAACTTTACATATGATAGTATTTGAA
22725 TATCATTGAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
40 1 0.03
41 35 0.95
42 1 0.03
ACGTcount: A:0.39, C:0.09, G:0.20, T:0.33
Consensus pattern (41 bp):
GGAAATCAATTGAAGTAACTTTACATATGATAGTATTTGAA
Found at i:24111 original size:43 final size:43
Alignment explanation
Indices: 24050--24137 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
24040 CCCTTGCTAC
*
24050 ATCATGAGTATTGAGGCCCCTTACTTAAGAGGTAAGTAGCTTA
1 ATCATCAGTATTGAGGCCCCTTACTTAAGAGGTAAGTAGCTTA
24093 ATCATCAGTATTGAGGCCCCTTACTTAAGAGGTAAGTAGCTTA
1 ATCATCAGTATTGAGGCCCCTTACTTAAGAGGTAAGTAGCTTA
24136 AT
1 AT
24138 TAAGATGTAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (43 bp):
ATCATCAGTATTGAGGCCCCTTACTTAAGAGGTAAGTAGCTTA
Found at i:24353 original size:20 final size:20
Alignment explanation
Indices: 24328--24373 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
24318 AAGAATTGAA
*
24328 GAGGGATACAAGAGAGGGAT
1 GAGGGATACAAGAGAGGGAG
* **
24348 GAGGGATGCTTGAGAGGGAG
1 GAGGGATACAAGAGAGGGAG
24368 GAGGGA
1 GAGGGA
24374 GCCTCTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.52, T:0.11
Consensus pattern (20 bp):
GAGGGATACAAGAGAGGGAG
Found at i:24511 original size:27 final size:27
Alignment explanation
Indices: 24450--24547 Score: 153
Period size: 27 Copynumber: 3.6 Consensus size: 27
24440 AAACAAGCCT
* *
24450 CCATATTTGACAAATACAAAGGA-AACCA
1 CCATTTTTGACAAACACAAA--ATAACCA
24478 CCATTTTTGACAAACACAAAATAACCA
1 CCATTTTTGACAAACACAAAATAACCA
24505 CCATTTTTGACAAACACAAAATAACCA
1 CCATTTTTGACAAACACAAAATAACCA
24532 CCATTTTTGACAAACA
1 CCATTTTTGACAAACA
24548 AATGGGTGGC
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
26 1 0.01
27 48 0.72
28 18 0.27
ACGTcount: A:0.47, C:0.24, G:0.06, T:0.22
Consensus pattern (27 bp):
CCATTTTTGACAAACACAAAATAACCA
Found at i:28948 original size:20 final size:20
Alignment explanation
Indices: 28923--28968 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
28913 AAGAATTGAA
*
28923 GAGGGATACAAGAGAGGGAT
1 GAGGGATACAAGAGAGGGAG
* **
28943 GAGGGATGCTTGAGAGGGAG
1 GAGGGATACAAGAGAGGGAG
28963 GAGGGA
1 GAGGGA
28969 GCCTCTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.52, T:0.11
Consensus pattern (20 bp):
GAGGGATACAAGAGAGGGAG
Found at i:29119 original size:24 final size:27
Alignment explanation
Indices: 29045--29115 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
29035 AAACAAGTCT
* *
29045 CCATATTTGACAAATACAAAGGA-AACCA
1 CCATTTTTGACAAACACAAA--ATAACCA
29073 CCATTTTTGACAAACACAAAATAACCA
1 CCATTTTTGACAAACACAAAATAACCA
29100 CCATTTTTGACAAACA
1 CCATTTTTGACAAACA
29116 AATAGGGTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.03
27 21 0.52
28 18 0.45
ACGTcount: A:0.46, C:0.24, G:0.07, T:0.23
Consensus pattern (27 bp):
CCATTTTTGACAAACACAAAATAACCA
Found at i:30933 original size:15 final size:15
Alignment explanation
Indices: 30913--30943 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
30903 TTTTGTCAAA
30913 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
30928 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
30943 T
1 T
30944 ACGAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (15 bp):
TCAAGTAAGATTGTG
Found at i:33727 original size:2 final size:2
Alignment explanation
Indices: 33720--33744 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
33710 TATATGTATA
33720 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
33745 AAATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:43978 original size:27 final size:27
Alignment explanation
Indices: 43936--44014 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
43926 TGGCATTCCT
* *
43936 TTTTAAGTCCATAACTCCATGGCAACC
1 TTTTAAGTCCACAACTCCGTGGCAACC
43963 TTTTAAGTCCACAACTCCGTGGCAACC
1 TTTTAAGTCCACAACTCCGTGGCAACC
* *
43990 TTATAAAGACCACAACTCCGTGGCA
1 TT-TTAAGTCCACAACTCCGTGGCA
44015 GCCCTTTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 27 0.57
28 20 0.43
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCAACC
Found at i:44008 original size:28 final size:27
Alignment explanation
Indices: 43948--44034 Score: 102
Period size: 28 Copynumber: 3.1 Consensus size: 27
43938 TTAAGTCCAT
* * *
43948 AACTCCATGGCAACCTTTTAAGTCCAC
1 AACTCCGTGGCAACCTTTAAAGACCAC
43975 AACTCCGTGGCAACCTTATAAAGACCAC
1 AACTCCGTGGCAACCTT-TAAAGACCAC
*
44003 AACTCCGTGGCAGCCCTTTTTAAAGACCAC
1 AACTCCGTGGCA-ACC--TTTAAAGACCAC
44033 AA
1 AA
44035 GTCAAAGGCA
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
27 16 0.31
28 20 0.38
29 2 0.04
30 12 0.23
31 2 0.04
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (27 bp):
AACTCCGTGGCAACCTTTAAAGACCAC
Found at i:44064 original size:28 final size:28
Alignment explanation
Indices: 43971--44492 Score: 559
Period size: 28 Copynumber: 18.6 Consensus size: 28
43961 CCTTTTAAGT
* * * *
43971 CCACAACTCCGTGGCAACCTTAT-AAAGA
1 CCACAAGTCAGTGGCATCCTT-TCAAAGC
* * * * *
43999 CCACAACTCCGTGGCAGCCCTTTTTAAAGA
1 CCACAAGTCAGTGGCA-TCC-TTTCAAAGC
** *
44029 CCACAAGTCAAAGGCATCCTTTGAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
44057 CCACAAGTCAG-GGACA-CCTTTTCAAAGA
1 CCACAAGTCAGTGG-CATCC-TTTCAAAGC
* *
44085 CCAAAAGT-AGTGGCACCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
**
44112 CCACAAGTTGGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * *
44140 CCACAAATCAGTGGCATCATTTCAAAAC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
44168 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
44196 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
44224 CCACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
*
44252 CCACAAGTCAGTGGCATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * *
44280 CCACAAGTCAGTCGCACCCTTTGAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
44308 TCACAAGTTAGTGGCATCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
44336 TCACAAGTTAGTGGCATCTTTTCAAAAC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * * *
44364 CCACAAGTTAGTGGCACCCTTTTAAAGG
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* * **
44392 CAACAAATCAGTGGTGTCCTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
* *
44420 CCACAAGTCAGTGACATCTTTTCAAAGC
1 CCACAAGTCAGTGGCATCCTTTCAAAGC
44448 CCACAAGTCAGTGGCA-CTCTTTCAAAGC
1 CCACAAGTCAGTGGCATC-CTTTCAAAGC
*
44476 CCACAAGTTAGTGGCAT
1 CCACAAGTCAGTGGCAT
44493 GTCAGTAGCA
Statistics
Matches: 422, Mismatches: 62, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
27 24 0.06
28 374 0.89
29 5 0.01
30 19 0.05
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (28 bp):
CCACAAGTCAGTGGCATCCTTTCAAAGC
Found at i:44085 original size:56 final size:56
Alignment explanation
Indices: 43955--54712 Score: 9816
Period size: 56 Copynumber: 189.9 Consensus size: 56
43945 CATAACTCCA
* * * * * * *
43955 TGGCAACCTTTT--AAGTCCACAACTCCGTGGCAACCTTAT-AAAGACCACAACTCCG
1 TGGC-ACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAG
* * ** *
44010 TGGCAGCCCTTTTTAAAGACCACAAGTCAAAGGCATCCTTTGAAAGCCCACAAGTCAG
1 TGGCA--CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * **
44068 -GGACACCTTTTCAAAGACCAAAAGT-AGTGGCACCCTTTCAAAGCCCACAAGTTGG
1 TGG-CACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
44123 TGGCATCC-TTTCAAAGCCCACAAATCAGTGGCATCATTTCAAAACCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
44179 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
44235 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
44291 TCGCACCCTTTGAAAGCTCACAAGTTAGTGGCATCCTTTCAAAGCTCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * * *
44347 TGGCATCTTTTCAAAACCCACAAGTTAGTGGCACCCTTTTAAAGGCAACAAATCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * *
44403 TGGTGTCC-TTTCAAAGCCCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAG
1 TGG-CACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
44459 TGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAGCAACCTTTCAAATCCCACAAGT
1 TGGCACCT-TTTCAAAGCCCAC-A---AGT--CA-GT--G--GCATCCTTTCAAAGCCCACAAGT
44523 CAG
54 CAG
* * *
44526 TAGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGCTCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
44583 TGGCA-TTTTTCCAAAGCCCACAAGTCAATGGTA-CCTTTTTAAAGCCCACAAGTTAA
1 TGGCACCTTTT-CAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
*
44639 TGGCATCC-TTTCAAAGCCCACAAGTTAGTGGCAT-CTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
44694 TGGCACCCTTTCAAAGCCCACAAGTGAGTGGCATCCTTTCAAAGCCCACAAGTCAA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
44750 TGGCATCTCTTCAAAAACCCACAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
44807 TGGCACCCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
44862 TGACATCTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTCAGTGGCATG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCAC-A---AGT--CA-G
** *
44925 TCAGTAGCACCCCTTCAAAGCCCACAAGTCAGTGGCATCCTTTTAAAGCCCACAAGTCAG
1 T--G--GCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * ** * * * * *
44985 TGGCATATCTTCAAAAGCTAACAAGTTAGTAGCAT-TTTTCCAATGCCCACAAGTCAA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAG
* * * * *
45042 TGGTACCCTTTT-AAAGCCCACAAGTTAGTGGCGTCCTTTCAAAGCCCACAAGTTAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * *
45098 TGGCTTCTTTTCAAAGCCCACAACTCAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
45154 TGGCATCGTTTCAAAGCCCACAAGTCAATGGCAT-CTCTTCAAAAACCCACAAGTCAA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
45211 TGGCATCTTTTCAAAGCCTACAAGTCAGTGGCACCCTTT-AAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
45266 AGGCATCC-TTTCAAAGCCCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
45322 TGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGT
1 TGGCACCT-TTTCAAAGCCCAC-A---AGT--CA-GT--G--GCATCCTTTCAAAGCCCACAAGT
45386 CAG
54 CAG
* * *
45389 TGGCATCC-TTTCAAAGCCCACAAGTCAATGGCA-CCTCTTCAAAAGCTCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
45446 TGGCA-TTTTTCCAAAGCCCACAAGTCAATGGTACCCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTT-CAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
45502 TGGCATCC-TTTCAAAGCCCACAAGTTAATGGCTTCTTTTCCAAGCCCAAAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
45558 TGGCACCCTTTCAAAGCCCACAAGTAAGTGGCATCCTTTCAAAGCCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
45614 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
45670 TAGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * ** * * *
45726 TGGCATCTTTTCGAATACCACAAGTTAGTGGCACCCTTTCAAAGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
45782 GGGCATCC-TTTCAAAGCCCACAAGTAAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
45839 TGGCATCTCTTCAAAAGCCTACAAGTCAGTGCCATCATTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*** * * * * * * *
45896 CAACACCCTTTT-AAGGCGCACAAGTTAGTGGCATCTTTTCAAATCACACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * ** * *
45952 TGGCATCTATTCAAAAGAACACAAGTCAGTGGCAT-CTCTTCAAAAGACCC-TAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAG-CCCACAAGTCAG
46010 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CTTATCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAG
* *
46066 TGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
46122 TGGCACCATTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAACTCACAAGTGAG
1 TGGCACC-TTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * ** *
46178 TGGTATCC-TTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAACAAACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * * *
46234 TGGCATCTCTTCAAAAGCCCACAAGTCAGTCGTATCTTTTCAAAGCCCATAAATGAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
46291 TGGCACCATTTCAAAACCCACAAGTTAGTGACATCTTTTCAAAACCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
46347 TGGCATCTCTTCAAAAGACCACAAGTTAGTGGCATCTTTTCAAAAGACCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * * *
46405 TGGCA-TTTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
46462 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
46518 TGGCATCC-TTTCAAAGCCCATAAGTTAGT--AATACTCTTTCAAAGCCCACAAGTCAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCAT-C-CTTTCAAAGCCCACAAGTCAG
* * * * * * *
46574 TGACATCTCTTTAAAAACCCACAAGTCAATGGCA-CCTTTTTAAATCCCACAAGTCAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
* * * *
46631 TGACACCCTTT-AAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
46686 TGGCATCTGTTCAAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAAGT-AA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * *
46743 TGGCAACTTTTCAAAACCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *** * * *
46799 TGGCATCCTTTT-AAAGCCCACAAGTTAGTAATACCCTTTCAAAGCCTACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
46855 TGGTATCCTTTT-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
46911 TGGTACCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
46967 TGGCATCC-TTTCAAAGCTCACAAGTCAATGGCAT-CTCTTCAAAAACCCACAAGTAAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
47024 TGGCATCTTTTCAAAGCCTACAAGTCAGTGGCACCCTTT-AAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
47079 AGGCATCC-TTTCAAAGCTCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
47135 TGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGT
1 TGGCACCT-TTTCAAAGCCCAC-A---AGT--CA-GT--G--GCATCCTTTCAAAGCCCACAAGT
*
47199 TAG
54 CAG
* * *
47202 TGGCATCC-TTTCAAAGCCCACAAGTCAATGGCAT-CTCTTCAAAAGCTCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
47259 TGGCA-TTTTTCCAAAGCCCACAAGTCAATGGTA-CTCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTT-CAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * * * *
47315 TGGCATCC-TTTCAAAGCCCACAAGTTAATGGCTTCTTTTCCAAGCCCAAAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
47371 TGGCACCCTTTCAAAGCCCACAAGTAAATGGCATCCTTTCAAAGCCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
47427 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
47483 TAGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * ** * * *
47539 TGGCATCTTTTCGAATACCACAAGTTAGTGGCACCCTTTCAAAGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
47595 GGGCATCC-TTTCAAAGCCCACAAGTAAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
47652 TGGCATCTCTTCAAAAGCCTACAAGTCAGTGCCATCATTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * * * * * *
47709 CAGCACCCTTTT-AAGGCGCACAAGTTAGTGGCATCTTTTCAAATCACACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* ** * * *
47765 TGGCA-TTTATTCAAAAGAACACAAGTCAGTGGCATCTTTTCAAAAGACCC-TAAGTTAG
1 TGGCACCTT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTC-AAAG-CCCACAAGTCAG
47823 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CTTATCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAG
* *
47879 TGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
47935 TGGCACCATTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAACTCACAAGTGAG
1 TGGCACC-TTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * ** *
47991 TGGTATCC-TTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAACAAACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * * *
48047 TGGCATCTCTTCAAAAGCCCACAAGTCAGTCGTATCTTTTCAAAGCCCATAAATGAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
48104 TGGCACCATTTCAAAACCCACAAGTTAGTGACATCTTTTCAAAACCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
48160 TGGCATCTCTTCAAAAGACCACAAGTTAGTGGCATCTTTTCAAAAGACCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * * *
48218 TGGCA-TTTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
48275 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTCAAAG-CCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
48329 TGGCATCC-TTTCAAAGCCCATAAGTTAGT--AATACTCTTTCAAAGCCCACAAGTCAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCAT-C-CTTTCAAAGCCCACAAGTCAG
* * * * * *
48385 TGACATCTCTTTAAAAACCCACAAGTCAATGGCA-CCTTTTTAAAGCCCACAAGTCAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
* * * *
48442 TGACACCCTTT-AAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
48497 TGGCATCTGTTCAAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAAGT-AA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * *
48554 TGGCAACTTTTCAAAACCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *** * * *
48610 TGGCATCCTTTT-AAAGCCCACAAGTTAGTAATACCCTTTCAAAGCCTACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
48666 TGGTATCCTTTT-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
48722 TGGTACCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
48778 TGGCATCC-TTTCAAAGCTCACAAGTCAATGGCAT-CTCTTCAAAAACCCACAAGTAAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
48835 TGGCATCTTTTCAAAGCCTACAAGTCAGTGGCACCCTTT-AAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
48890 AGGCATCC-TTTCAAAGCTCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
48946 TGGCACTCTTTT-AAAGCCCACAAGTTAGTGGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGT
1 TGGCAC-CTTTTCAAAGCCCAC-A---AGT--CA-GT--G--GCATCCTTTCAAAGCCCACAAGT
*
49010 TAG
54 CAG
* * *
49013 TGGCATCC-TTTCAAAGCCCACAAGTCAATGGCAT-CTCTTCAAAAGCTCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
49070 TGGCA-TTTTTCCAAAGCCCACAAGTCAATGGTA-CTCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTT-CAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * * * *
49126 TGGCATCC-TTTCAAAGCCCACAAGTTAATGGCTTCTTTTCCAAGCCCAAAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
49182 TGGCACCCTTTCAAAGCCCACAAGTAAGTGGCATCCTTTCAAAGCCCATAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
49238 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
49294 TAGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * ** * * *
49350 TGGCATCTTTTCGAATACCACAAGTTAGTGGCACCCTTTCAAAGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
49406 GGGCATCC-TTTCAAAGCCCACAAGTAAGTGGCAT-CTCTTCAAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
49463 TGGCATCTCTTCAAAAGCCTACAAGTCAGTGCCATCATTTCAAATCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * * * * * *
49520 CAGCACTCTTTT-AAGGCGCACAAGTTAGTGGCATCTTTTCAAATCACACAAGTTAG
1 TGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * ** * *
49576 TGGCATCTATTCAAAAGAACACAAGTCAGTGGCAT-CTCTTCAAAAGACCC-TAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAG-CCCACAAGTCAG
*
49634 TGGCATCC-TTTCAAAGCCCACAAGTCATTGGCAT-CTTATCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TCAAAGCCCACAAGTCAG
* *
49690 TGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
49746 TGGCACCATTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAACTCACAAGTGAG
1 TGGCACC-TTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * ** *
49802 TGGTATCC-TTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAACAAACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * * *
49858 TGGCATCTCTTCAAAAGCCCACAAGTCAGTCGTATCTTTTCAAAGCCCATAAATGAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * ** *
49915 TGGCACCCTTTCAAAACCCACAAGTTAGTGACATCTTTTCAAAAACCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * * * * *
49971 TGGCATGTCTTCAAAAGACCACAAGTTAGTGGCATCTTTTCAAAAGACCACAAGTCCG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * * *
50029 TGGCA-TTTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
50086 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*** * * * * *
50142 TAATA-CTCTTTCAAAGCCCACAAGTCAATGACATCTCTTTAAAAACCCACAAGTCAA
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * * * *
50199 TGGCACCTTTTTAAAGCCCACAAGTTAGTGACACCCTTT-AAAGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
50254 TGGCATCC-TTTCAAAGCCCACAAGTCATTGGCAT-CTGTTCAAAAGACCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
50311 TGGCATCTCTTTAAAAGCCCACAAGT-AATGGCAACTTTTCAAAACCCACAAGTCAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
50367 TGGCATCC-TTTCAAAGCCCACAAGTTAGTGGCATCCTTTTAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*** * * * * *
50423 TAATACCCTTTCAAAGCCTACAAGTTAGTGGTATCCTTTTAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
50479 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGTA-CCTTTTCAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
* *
50535 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCTCACAAGTCAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
50591 TGGCATCTCTTCAAAAACCCACAAGTAAATGGCATCTTTTCAAAGCCTACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
50648 TGGCACCCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAAGCTCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
50703 TGACATCTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCAC-A---AGT--CA-G
* * *
50766 TCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAC
1 T--G--GCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
50826 TGGCATCTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCCAAAGCCCACAAGTCAA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAG
* * * *
50883 TGGTACTCTTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAA
1 TGGCAC-CTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * * *
50939 TGGCTTCTTTTCCAAGCCCAAAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTAAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
50995 TGGCATCC-TTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
51051 TGGCATCTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * ** *
51107 TGGCATCC-TTTCAAAGCCCACAAGTTAGTGGCATCTTTTCGAATACCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
51163 TGGCACCCTTTCAAAGCCTACAAGTCAGGGGCATCCTTTCAAAGCCCACAAGTAAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
51219 TGGCATCTCTTCAAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGCCTACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * ** * * * * *
51277 TGCCATCATTTCAAAGCCCACAAGTCAGCAGCACCCTTTTAAGGCGCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * **
51333 TGGCATCTTTTCAAATCACACAAGTTAGTGGCAT-CTATTCAAAAGAACACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * *
51390 TGGCATCTCTTCAAAAGACCATAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
51447 TGGCATCTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
51503 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
51559 TGGCATCC-TTTCAAAACTCACAAGTGAGTGGTATCCTTTCAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * ** *
51615 TGGCATCTTTTCAAAACAAACAAGTTAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * * * *
51672 TCGTATCTTTTCAAAGCCCATAAATGAGTGGCACCCTTTCAAAACCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
51728 TGACATCTTTTCAAAACCCACAAGTTAGTGGCAT-CTCTTCAAAAGACCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
51785 TGGCATCTTTTCAAAAGACCACAAGTCAGTGGCAT-TTCTTCAAAAGACCACAGGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
** *
51843 TGGCATCC-TTTCAAAGCCCACAAGTTTGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
51899 TGGCACCCTTTCAAAGCCCACAAGTTAGTGGCAACCTTTCAAAGCCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*** * * * * *
51955 TAATACCCTTTCAAAGCCCACAAGTCAATGGCATCTCTTTAAAAACCCACAAGTCAA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * * * *
52012 TGGCACCTTTTTAAAGCCCACAAGTCAGTGACACCCTTT-AAGGCCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
52067 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CTGTTCAAAAGACCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
52124 TGGCATCTCTTTAAAAGCCCACAAGT-AATGGCAACTTTTCAAAACCCACAAGTCAG
1 TGGCACCT-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
52180 TGGCATCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*** * * * * *
52236 TAATACCCTTTCAAAGCCTACAAGTTAGTGGTATCCTTTTAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* *
52292 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGTA-CCTTTTCAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
* * *
52348 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCTCACAAATCAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
52404 TGGCATCTCTTCAAAAACCCACAAGTCAATGGCATCTTTTCAAAGCCTACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
*
52461 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCTCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
52517 TGGCATCTATTCAAAAGCCCACAAGTTAGTGGCATCCTTTCAATGCCCACGAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
52574 TGACACATTTTCAAAGCCTACAAGTTAGTAGCATCCTTTCAAAGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
52630 TTGCATCTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCCAAAGCCCACAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAG
* * * * *
52687 TGGTACCCTTTT-AAATCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAA
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * * *
52743 TGGCTTCTTTTCAAAGCCCACAAGTAAGTGGCACCCTTTGAAAGCCCACAAGTAAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
52799 TGGCATCCTTTT-AAAGCCCACGAGTTAGTGGCATCCTTTCAAAACCCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
52855 TGGCATCTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTATGAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* ** * *
52911 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCTTTTTGAAGACCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
52967 TGGCACCCTTTCAAAGCCCACAAGTCAATGGCATCTTTTCGAAA-ACCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * * *
53023 TGGCACCCTTTCAAAGCCTACAAGTTAGTGGCATCCTTTCAATGCCTACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
53079 TGGCATCTCTTCAAAAGCACATAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
53136 TGGCACCCTTTT-AAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACATGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * **
53192 TGGCATCC-TTTCAAAACCCACAGGTTAGTGGCAT-CTCTTCAAAAGAACACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * *
53249 TGGCATCTCTTCAAAAGACCATAAGTCAGTGGTATCCTTTCAAAATCCC-CAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTC-AAAGCCCACAAGTCAG
* * * * *
53306 TGGCATCTTATCAAAGCCCATAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
53362 TGGCATCC-TTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
53418 TGGCATCC-TTTCAAAACTCACAAGTCAGTGGTATCATTACAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
53474 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAT-TTCTTCAAAAACCCATAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * *
53531 TGGCATCTTTTCAAAGCCCATAAATGAATGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
53587 TGACATCTTTTCAAAACCCACAATTCAGTGGCAT-CTCTTCAAAAGACCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * * * *
53644 TGGCATCTCTTCAAAAGACCACAGGTTAGTGGCATCTTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
53701 TGGCATCTTTTCAAAGCCCACAAGTCAGTGGCA-CGCTTTCAAAGCTCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * *
53757 TGGCATCC-TTTCAAAGCCCATAAGTGAGTGGCATCCTTTCAAAGCCCATAAGTCTA-
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTC-AG
* * * * *
53813 TGGCATCTCTTCAAAAAG-CCAAAAGTCAATGGCATCTTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTC--AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
53870 TGGCACCCTTT-AAAACCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * * *
53925 TGACATCTCTTCGAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAAGT-AA
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
* * * *
53982 TGGCAACTTTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* ** * *
54038 TGGCATCCTTTT-AAAGCCCACAAGTTAGTAACACCCTTTCAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * *
54094 TGGTATCCTTTT-AAAGCCCACAAGTCAGTGGCATCTTTTCAAAGGCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * *
54150 TGGCACCTTTTCAATGCCCATAAGTTAGTGGCATCCTTTGAAAGCCCATAAGTCAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
54206 TGGCATCC-TTTCAAAGCTCACAAGTCAGTGGCAT-CTCTTCAAAAGCCTAGAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
** * * ** *
54263 TGGCATATTTTCAAAGCCCATAAGTCAGTGGCA-CATTTTCAAAGCTTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAG
*
54319 TGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGACCACAAGTCAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-AAAGCCCACAAGTCAG
* * * * * *
54376 TGGCATCTCTTCAAAAGACCACAAGTTAGTGGCATCCTTTTAAAGCCCACAAGTTAG
1 TGGCACCTTTTC-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
** * * *
54433 TGGCATATTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCATAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * *
54489 TGGCATTCTTTT-AAAGCCCACAAGTCAGCGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCA-CCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
* * * * * *
54545 TGGCACCCTTTCAAAGCCCACAAGTTAATGGCATACCATTTCAAAGCTTACACAAATCAA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCAT-CC-TTTCAAAGC--CCACAAGTCAG
* * * * * * *
54605 TGGCACCCTTCCAAAGCCCATAAGTCAGTGGCACCCGTTT-AAAACCTACAAGTTAG
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAAAGCCCACAAGTCAG
* **
54661 TGGTACCCCTTCAAAGCCCACAAGTCAGTGGCATCCCCTTTCAAAGCCCACA
1 TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCAT--CCTTTCAAAGCCCACA
54713 CAAGTCGATG
Statistics
Matches: 8878, Mismatches: 1404, Indels: 839
0.80 0.13 0.08
Matches are distributed among these distances:
52 1 0.00
54 55 0.01
55 780 0.09
56 4951 0.56
57 2057 0.23
58 632 0.07
59 27 0.00
60 62 0.01
61 12 0.00
62 12 0.00
63 30 0.00
65 6 0.00
66 9 0.00
67 238 0.03
68 3 0.00
69 3 0.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (56 bp):
TGGCACCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAG
Found at i:44210 original size:84 final size:84
Alignment explanation
Indices: 44018--54712 Score: 10554
Period size: 84 Copynumber: 125.9 Consensus size: 84
44008 CGTGGCAGCC
* * * ** *
44018 CTTTTTAAAGACCACAAGTCAAAGGCATCCTTTGAAAGCCCACAAGTCAG-GGACA-CCTTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGG-CATCC-TTTCA
* * *
44081 AAGACCAAAAGT-AGTGGCAC
64 AAGCCCACAAGTCAGTGGCAT
* * * *
44101 CCTTTCAAAGCCCACAAGTTGGTGGCATCCTTTCAAAGCCCACAAATCAGTGGCATCATTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
44166 ACCCACAAGTCAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * *
44185 CTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
44250 GCCCACAAGTCAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * * *
44269 CTTTTCAAAGCCCACAAGTCAGTCGCACCCTTTGAAAGCTCACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
44334 GCTCACAAGTTAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * * * **
44353 CTTTTCAAAACCCACAAGTTAGTGGCACCCTTTTAAAGGCAACAAATCAGTGGTGTCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
44418 GCCCACAAGTCAGTGACAT
66 GCCCACAAGTCAGTGGCAT
*
44437 CTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAG
1 CTTTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCAC-A---AGT--CA-GT--G--G
* * *
44501 CAACCTTTCAAATCCCACAAGTCAGTAGCAT
54 CATCCTTTCAAAGCCCACAAGTCAGTGGCAT
* * * * *
44532 CCTTTCAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCC
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTT-C
* * *
44595 AAAGCCCACAAGTCAATGGTAC
63 AAAGCCCACAAGTCAGTGGCAT
* * *
44617 CTTTTTAAAGCCCACAAGTTAATGGCATCCTTTCAAAGCCCACAAGTTAGTGGCAT-CTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
44681 GCCCACAAGTCAGTGGCAC
66 GCCCACAAGTCAGTGGCAT
* * *
44700 CCTTTCAAAGCCCACAAGTGAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
44764 AAACCCACAAGTCAATGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * *
44785 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
44849 GCCCACAAGTCAGTGACAT
66 GCCCACAAGTCAGTGGCAT
*
44868 CTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTCAGTGGCATGTCAGTAG
1 CTTTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGT-G---G-CA-T--
*
44932 CACCCCTTCAAAGCCCACAAGTCAGTGGCAT
57 ---CCTTTCAAAGCCCACAAGTCAGTGGCAT
* * ** * * *
44963 CCTTTT-AAAGCCCACAAGTCAGTGGCAT-ATCTTCAAAAGCTAACAAGTTAGTAGCAT-TTTTC
1 -CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTT-
* * * *
45025 CAATGCCCACAAGTCAATGGTACC
62 CAAAGCCCACAAGTCAGTGGCA-T
* * * * *
45049 CTTTT-AAAGCCCACAAGTTAGTGGCGTCCTTTCAAAGCCCACAAGTTAATGGCTTCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
45113 GCCCACAACTCAGTGGCAC
66 GCCCACAAGTCAGTGGCAT
* * *
45132 CCTTTCAAAGCCCACAAGTTAGTGGCATCGTTTCAAAGCCCACAAGTCAATGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
45196 AAACCCACAAGTCAATGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * *
45217 CTTTTCAAAGCCTACAAGTCAGTGGCACCCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
45281 GCCCACAAGTCAGTGACAT
66 GCCCACAAGTCAGTGGCAT
*
45300 CTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAG
1 CTTTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCAC-A---AGT--CA-GT--G--G
*
45364 CACCCTTTCAAAGCCCACAAGTCAGTGGCAT
54 CATCCTTTCAAAGCCCACAAGTCAGTGGCAT
* * * * * *
45395 CCTTTCAAAGCCCACAAGTCAATGGCA-CCTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCC
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTT-C
* * *
45458 AAAGCCCACAAGTCAATGGTACC
63 AAAGCCCACAAGTCAGTGGCA-T
* * * * *
45481 CTTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAATGGCTTCTTTTCCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
45545 GCCCAAAAGTCAGTGGCAC
66 GCCCACAAGTCAGTGGCAT
* * * *
45564 CCTTTCAAAGCCCACAAGTAAGTGGCATCCTTTCAAAGCCCATAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
45629 GCCCACAAGTCAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * *
45648 CTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
45712 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* ** * * *
45732 CTTTTCGAATACCACAAGTTAGTGGCACCCTTTCAAAGCCTACAAGTCAGGGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
45797 GCCCACAAGTAAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * *
45816 CTCTTCAAAAGCCCACAAGTCAGTGGCAT-CTCTTCAAAAGCCTACAAGTCAGTGCCATCATTTC
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTC
*** *
45880 AAAGCCCACAAGTCAGCAACACC
63 AAAGCCCACAAGTCAGTGGCA-T
* * * * * *
45903 CTTTT-AAGGCGCACAAGTTAGTGGCATCTTTTCAAATCACACAAGTTAGTGGCAT-CTATTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
**
45966 AAGAACACAAGTCAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* *
45987 CTCTTCAAAAGACCC-TAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CTTATC
1 CTTTTC-AAAG-CCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTT-TC
*
46050 AAAGCCCACAAGTCAGTGGCAC
63 AAAGCCCACAAGTCAGTGGCAT
* *
46072 CCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA-CCATTTTAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCAA
*
46136 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * * * *
46156 CCTTTCAAAACTCACAAGTGAGTGGTATCCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* ** *
46221 ACAAACAAGTTAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * * * * *
46240 CTCTTCAAAAGCCCACAAGTCAGTCGTATCTTTTCAAAGCCCATAAATGAGTGGCA-CCATTTCA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCA
* * *
46304 AAACCCACAAGTTAGTGACAT
64 AAGCCCACAAGTCAGTGGCAT
* * * *
46325 CTTTTCAAAACCCACAAGTTAGTGGCAT-CTCTTCAAAAGACCACAAGTTAGTGGCATCTTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTC-
*
46389 AAAGACCACAAGTCAGTGGCAT
63 AAAGCCCACAAGTCAGTGGCAT
* * * *
46411 -TTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCA
1 CTT-TTC-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
*
46475 AAGCCCACAAGTCAGTGGCAC
64 AAGCCCACAAGTCAGTGGCAT
* * * *
46496 CCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCATAAGTTAGT--AATACTCTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-C-CTTTCA
* *
46559 AAGCCCACAAGTCAATGACAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * * * *
46580 CTCTTTAAAAACCCACAAGTCAATGGCA-CCTTTTTAAATCCCACAAGTCAGTGACACCCTTT-A
1 CT-TTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
* *
46643 AAGCCTACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * *
46664 CCTTTCAAAGCCCACAAGTCAGTGGCAT-CTGTTCAAAAGACCACAAGTTAGTGGCATCTCTTTA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATC-CTTTC
* *
46728 AAAGCCCACAAGT-AATGGCAA
63 AAAGCCCACAAGTCAGTGGCAT
* * * *
46749 CTTTTCAAAACCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTTAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *** *
46814 GCCCACAAGTTAGTAATAC
66 GCCCACAAGTCAGTGGCAT
* * * *
46833 CCTTTCAAAGCCTACAAGTTAGTGGTATCCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
46898 GCCCACAAGTCAGTGGTAC
66 GCCCACAAGTCAGTGGCAT
*
46917 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
46982 GCTCACAAGTCAATGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * * * *
47001 CTCTTCAAAAACCCACAAGTAAATGGCATCTTTTCAAAGCCTACAAGTCAGTGGCACCCTTT-AA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
* * *
47065 AGCCTACAAGTTAGAGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * *
47085 CCTTTCAAAGCTCACAAGTCAGTGACATCTTTTCAAAGCCCACAAGTCAGTGGCA-CTCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAA
*
47149 AGCCCACAAGTTAGTGGCATGT
65 AGCCCACAAGTCAGTGGCA--T
*
47171 CAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAATGGCAT
1 C--T-------TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT
* *
47236 -CTCTTCAAAAGCTCACAAGTTAGTGGCAT
57 CCT-TTC-AAAGCCCACAAGTCAGTGGCAT
* * * * *
47265 -TTTTCCAAAGCCCACAAGTCAATGGTA-CTCTTTTAAAGCCCACAAGTTAGTGGCATCCTTTCA
1 CTTTT-CAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
* * *
47328 AAGCCCACAAGTTAATGGCTT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * *
47349 CTTTTCCAAGCCCAAAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTAAATGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
47414 GCCCATAAGTTAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * *
47433 CCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAA
*
47497 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * ** * *
47517 CCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCGAATACCACAAGTTAGTGGCACCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
47582 GCCTACAAGTCAGGGGCAT
66 GCCCACAAGTCAGTGGCAT
* *
47601 CCTTTCAAAGCCCACAAGTAAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAGTGGCAT-CTCTTC
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC
* *
47664 AAAAGCCTACAAGTCAGTGCCAT
63 -AAAGCCCACAAGTCAGTGGCAT
* * ** * * * * * *
47687 CATTTCAAAGCCCACAAGTCAGCAGCACCCTTTTAAGGCGCACAAGTTAGTGGCATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* * *
47752 TCACACAAGTTAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
** * * * *
47771 -TTATTCAAAAGAACACAAGTCAGTGGCATCTTTTCAAAAGACCC-TAAGTTAGTGGCATCCTTT
1 CTT-TTC-AAAGCCCACAAGTTAGTGGCATCCTTTC-AAAG-CCCACAAGTCAGTGGCATCCTTT
47834 CAAAGCCCACAAGTCAGTGGCAT
62 CAAAGCCCACAAGTCAGTGGCAT
* * * *
47857 CTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
47922 GCCCACAAGTCAGTGGCAC
66 GCCCACAAGTCAGTGGCAT
* * * *
47941 CATTTT-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAACTCACAAGTGAGTGGTATCCTTTCAA
1 C-TTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
48005 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* ** * * *
48025 CTTTTCAAAACAAACAAGTTAGTGGCAT-CTCTTCAAAAGCCCACAAGTCAGTCGTATCTTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTCA
* * * *
48089 AAGCCCATAAATGAGTGGCAC
64 AAGCCCACAAGTCAGTGGCAT
* * * * * *
48110 CATTTCAAAACCCACAAGTTAGTGACATCTTTTCAAAACCCACAAGTTAGTGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
48174 AAGACCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * *
48195 CTTTTCAAAAGACCACAAGTCAGTGGCAT-TTCTTCAAAAGACCACAGGTTAGTGGCATCCTTTC
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTC
*
48259 AAAGCCCACAAGTTAGTGGCAT
63 AAAGCCCACAAGTCAGTGGCAT
* * *
48281 CTTTTCAAAGCCCACAAGTCAGTGGCA-CCCTTCAAAG-CCACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* * *
48344 GCCCATAAGTTAGT--AAT
66 GCCCACAAGTCAGTGGCAT
* * * * * *
48361 ACTCTTTCAAAGCCCACAAGTCAATGACATCTCTTTAAAAACCCACAAGTCAATGGCA-CCTTTT
1 -CT-TTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCC-TTT
* * *
48425 TAAAGCCCACAAGTCAGTGACAC
62 CAAAGCCCACAAGTCAGTGGCAT
* *
48448 CCTTT-AAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CTGTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
48511 AAGACCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * *
48532 CTCTTTAAAAGCCCACAAG-TAATGGCAACTTTTCAAAACCCACAAGTCAGTGGCATCCTTTCAA
1 CT-TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
48596 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
*** * * * * *
48616 CCTTTT-AAAGCCCACAAGTTAGTAATACCCTTTCAAAGCCTACAAGTTAGTGGTATCCTTTTAA
1 -CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
48680 AGCCCACAAGTCAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * *
48700 CCTTTCAAAGCCCACAAGTCAGTGGTA-CCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
48764 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * * * * *
48784 CCTTTCAAAGCTCACAAGTCAATGGCAT-CTCTTCAAAAACCCACAAGTAAATGGCATCTTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTCA
* *
48848 AAGCCTACAAGTCAGTGGCAC
64 AAGCCCACAAGTCAGTGGCAT
* * * * * *
48869 CCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAAGCTCACAAGTCAGTGACATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
48933 GCCCACAAGTCAGTGGCACT
66 GCCCACAAGTCAGTGGCA-T
*
48953 CTTTT-AAAGCCCACAAGTTAGTGGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGC
1 CTTTTCAAAGCCCACAAGTTAGT-G---G-CA-T-----CCTTTCAAAGCCCACAAGTCAGTGGC
*
49017 ATCCTTTCAAAGCCCACAAGTCAATGGCAT
55 ATCCTTTCAAAGCCCACAAGTCAGTGGCAT
* * * * * *
49047 CTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCCAAAGCCCACAAGTCAATGGTA-CTCTTTT
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTT-CAAAGCCCACAAGTCAGTGGCATC-CTTTC
*
49110 AAAGCCCACAAGTTAGTGGCAT
63 AAAGCCCACAAGTCAGTGGCAT
* * * * * * *
49132 CCTTTCAAAGCCCACAAGTTAATGGCTTCTTTTCCAAGCCCAAAAGTCAGTGGCACCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
49197 GCCCACAAGTAAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * *
49216 CCTTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
49281 GCCCACAAGTCAGTAGCA-
66 GCCCACAAGTCAGTGGCAT
* * *
49299 CTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCGA
1 CT-TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
** * *
49364 ATACCACAAGTTAGTGGCAC
65 AGCCCACAAGTCAGTGGCAT
* * * * *
49384 CCTTTCAAAGCCTACAAGTCAGGGGCATCCTTTCAAAGCCCACAAGTAAGTGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
*
49448 AAGCCCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * * ** *
49469 CTCTTCAAAAGCCTACAAGTCAGTGCCATCATTTCAAATCCCACAAGTCAGCAGCA-CTCTTTTA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCA
* * *
49533 AGGCGCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * **
49554 CTTTTCAAATCACACAAGTTAGTGGCAT-CTATTCAAAAGAACACAAGTCAGTGGCAT-CTCTTC
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC
* *
49617 AAAAGACCC-TAAGTTAGTGGCAT
63 -AAAG-CCCACAAGTCAGTGGCAT
* * * *
49640 CCTTTCAAAGCCCACAAGTCATTGGCAT-CTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
49704 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * *
49724 CCTTTCAAAGCCCACAAGTCAGTGGCA-CCATTTTAAAGCCCACAAGTTAGTGGCATCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
* * * *
49788 AACTCACAAGTGAGTGGTAT
65 AGCCCACAAGTCAGTGGCAT
* * * ** *
49808 CCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAACAAACAAGTTAGTGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
49872 AAGCCCACAAGTCAGTCGTAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * * * *
49893 CTTTTCAAAGCCCATAAATGAGTGGCACCCTTTCAAAACCCACAAGTTAGTGACATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
** *
49958 AACCACAAGTTAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * * * *
49977 GTCTTCAAAAGACCACAAGTTAGTGGCATCTTTTCAAAAGACCACAAGTCCGTGGCAT-TTCTTC
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC
* * *
50041 AAAAGACCACAGGTTAGTGGCAT
63 -AAAGCCCACAAGTCAGTGGCAT
* *
50064 CCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* * *
50129 GCCCATAAGTTAGT--AAT
66 GCCCACAAGTCAGTGGCAT
* * * * * *
50146 ACTCTTTCAAAGCCCACAAGTCAATGACATCTCTTTAAAAACCCACAAGTCAATGGCA-CCTTTT
1 -CT-TTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCC-TTT
* * * *
50210 TAAAGCCCACAAGTTAGTGACAC
62 CAAAGCCCACAAGTCAGTGGCAT
* * *
50233 CCTTT-AAAGCCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCATTGGCAT-CTGTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
50296 AAGACCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * *
50317 CTCTTTAAAAGCCCACAAG-TAATGGCAACTTTTCAAAACCCACAAGTCAGTGGCATCCTTTCAA
1 CT-TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
50381 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
*** * * * * *
50401 CCTTTT-AAAGCCCACAAGTTAGTAATACCCTTTCAAAGCCTACAAGTTAGTGGTATCCTTTTAA
1 -CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
50465 AGCCCACAAGTCAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * *
50485 CCTTTCAAAGCCCACAAGTCAGTGGTA-CCTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
50549 AGCCCACAAGTCAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * * * * *
50569 CCTTTCAAAGCTCACAAGTCAATGGCAT-CTCTTCAAAAACCCACAAGTAAATGGCATCTTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTCA
* *
50633 AAGCCTACAAGTCAGTGGCAC
64 AAGCCCACAAGTCAGTGGCAT
* * * * * *
50654 CCTTT-AAAGCCTACAAGTTAGAGGCATCCTTTCAAAGCTCACAAGTCAGTGACATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
50718 GCCCACAAGTCAGTGGCA-
66 GCCCACAAGTCAGTGGCAT
*
50736 CTCTTTCAAAGCCCACAAGTTAGTGGCATGTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGG
1 CT-TTTCAAAGCCCACAAGTTAGT-G---G-CA-T-----CCTTTCAAAGCCCACAAGTCAGTGG
*
50801 CATCCTTTCAAAGCCCACAAGTCACTGGCAT
54 CATCCTTTCAAAGCCCACAAGTCAGTGGCAT
* * * * * *
50832 CTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCCAAAGCCCACAAGTCAATGGTA-CTCTTTT
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTT-CAAAGCCCACAAGTCAGTGGCATC-CTTTC
*
50895 AAAGCCCACAAGTTAGTGGCAT
63 AAAGCCCACAAGTCAGTGGCAT
* * * * * * *
50917 CCTTTCAAAGCCCACAAGTTAATGGCTTCTTTTCCAAGCCCAAAAGTCAGTGGCACCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
50982 GCCCACAAGTAAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * *
51001 CCTTTCAAAGCCCATAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
51066 GCCCACAAGTCAGTAGCA-
66 GCCCACAAGTCAGTGGCAT
* * *
51084 CTCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCGA
1 CT-TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
** * *
51149 ATACCACAAGTTAGTGGCAC
65 AGCCCACAAGTCAGTGGCAT
* * * * *
51169 CCTTTCAAAGCCTACAAGTCAGGGGCATCCTTTCAAAGCCCACAAGTAAGTGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
51233 AAGCCCACAAGTCAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * ** * *
51254 CTCTTCAAAAGCCTACAAGTCAGTGCCATCATTTCAAAGCCCACAAGTCAGCAGCACCCTTTTAA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
* * *
51319 GGCGCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * **
51339 CTTTTCAAATCACACAAGTTAGTGGCAT-CTATTCAAAAGAACACAAGTCAGTGGCAT-CTCTTC
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC
* * *
51402 AAAAGACCATAAGTTAGTGGCAT
63 -AAAGCCCACAAGTCAGTGGCAT
* * *
51425 CCTTTCAAAGCCCACAAGTCAGTGGCAT-CTTATCAAAGCCCACAAGTCAGTGGCACCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
51489 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * *
51509 CCTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* * * *
51574 ACTCACAAGTGAGTGGTAT
66 GCCCACAAGTCAGTGGCAT
* * * ** *
51593 CCTTTCAAAGCCCACAAGTTAGTGGCATCTTTTCAAAACAAACAAGTTAGTGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
51657 AAGCCCACAAGTCAGTCGTAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * * * *
51678 CTTTTCAAAGCCCATAAATGAGTGGCACCCTTTCAAAACCCACAAGTTAGTGACATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
51743 ACCCACAAGTTAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * *
51762 CTCTTCAAAAGACCACAAGTTAGTGGCATCTTTTCAAAAGACCACAAGTCAGTGGCAT-TTCTTC
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC
* * *
51826 AAAAGACCACAGGTTAGTGGCAT
63 -AAAGCCCACAAGTCAGTGGCAT
* * * *
51849 CCTTTCAAAGCCCACAAGTTTGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
51914 GCCCACAAGTTAGTGGCAA
66 GCCCACAAGTCAGTGGCAT
* * *** * * *
51933 CCTTTCAAAGCCCATAAGTTAGTAATACCCTTTCAAAGCCCACAAGTCAATGGCATCTCTTTAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCAA
* * *
51998 AACCCACAAGTCAATGGCAC
65 AGCCCACAAGTCAGTGGCAT
* * * * * * *
52018 CTTTTTAAAGCCCACAAGTCAGTGACACCCTTT-AAGGCCTACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
52082 GCCCACAAGTCAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * * *
52101 CTGTTCAAAAGACCACAAGTTAGTGGCATCTCTTTAAAAGCCCACAAGT-AATGGCAACTTTTCA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCA
*
52165 AAACCCACAAGTCAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * *** *
52186 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTTAAAGCCCACAAGTTAGTAATACCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* * *
52251 GCCTACAAGTTAGTGGTAT
66 GCCCACAAGTCAGTGGCAT
* *
52270 CCTTTT-AAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGTA-CCTTTTCA
1 -CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCC-TTTCA
*
52333 AAGCCCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * *
52354 CCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCTCACAAATCAATGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
52418 AAACCCACAAGTCAATGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* *
52439 CTTTTCAAAGCCTACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
52504 GCTCACAAGTCAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * *
52523 CTATTCAAAAGCCCACAAGTTAGTGGCATCCTTTCAATGCCCACGAGTCAGTGACA-CATTTTCA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATC-CTTTCA
* * *
52587 AAGCCTACAAGTTAGTAGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * * *
52608 CCTTTCAAAGCCTACAAGTCAGTTGCAT-CTCTTCAAAAGCTCACAAGTTAGTGGCAT-TTTTCC
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTT-C
* * *
52671 AAAGCCCACAAGTTAGTGGTACC
63 AAAGCCCACAAGTCAGTGGCA-T
* * * * *
52694 CTTTT-AAATCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTTAATGGCTTCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
52758 GCCCACAAGTAAGTGGCAC
66 GCCCACAAGTCAGTGGCAT
* * * * * *
52777 CCTTTGAAAGCCCACAAGTAAGTGGCATCCTTTTAAAGCCCACGAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
*
52842 ACCCACAAGTCAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * *
52861 CTTTTCAAAGCCCACAAGTCAGTAGCA-CTCTATGAAAGCCCACAAGTTAGTGGCATCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
52925 AGCCCACAAGTCAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
** * * * *
52945 CTTTTTGAAGACCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTCAATGGCATCTTTTCGAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTC-AA
* * *
53010 A-ACCACAAGTTAGTGGCAC
65 AGCCCACAAGTCAGTGGCAT
* * * *
53029 CCTTTCAAAGCCTACAAGTTAGTGGCATCCTTTCAATGCCTACAAGTCAGTGGCAT-CTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* * *
53093 AAGCACATAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * *
53114 CTTTTCAAAGCCCACAAGTCAGTGGCACCCTTTTAAAGCCCACAAGTCAGTGGCACCCTTTTAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
53179 GCCCACATGTTAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * **
53198 CCTTTCAAAACCCACAGGTTAGTGGCAT-CTCTTCAAAAGAACACAAGTCAGTGGCAT-CTCTTC
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCT-TTC
* * *
53261 AAAAGACCATAAGTCAGTGGTAT
63 -AAAGCCCACAAGTCAGTGGCAT
* * * *
53284 CCTTTCAAAATCCC-CAAGTTAGTGGCAT-CTTATCAAAGCCCATAAGTCAGTGGCACCCTTTCA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTT-TCAAAGCCCACAAGTCAGTGGCATCCTTTCA
*
53347 AAGCCCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * *
53368 CCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* * *
53433 ACTCACAAGTCAGTGGTAT
66 GCCCACAAGTCAGTGGCAT
* * * *
53452 CATTACAAAGCCCACAAGTTAGTGGCATCTTTTCAAAGCCCACAAGTCAGTGGCAT-TTCTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
53516 AAACCCATAAGTCAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * * * *
53537 CTTTTCAAAGCCCATAAATGAATGGCACCCTTTCAAAGCCCACAAGTTAGTGACATCTTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
53602 ACCCACAATTCAGTGGCAT
66 GCCCACAAGTCAGTGGCAT
* * * * * * * *
53621 CTCTTCAAAAGACCACAAGTCAGTGGCAT-CTCTTCAAAAGACCACAGGTTAGTGGCATCTTTTT
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTC
*
53685 AAAGCCCACAAGTTAGTGGCAT
63 AAAGCCCACAAGTCAGTGGCAT
* * *
53707 CTTTTCAAAGCCCACAAGTCAGTGGCA-CGCTTTCAAAGCTCACAAGTTAGTGGCATCCTTTCAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
* *
53771 AGCCCATAAGTGAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * *
53791 CCTTTCAAAGCCCATAAGTCTA-TGGCAT-CTCTTCAAAAAG-CCAAAAGTCAATGGCATCTTTT
1 CTTTTCAAAGCCCACAAGT-TAGTGGCATCCT-TTC--AAAGCCCACAAGTCAGTGGCATCCTTT
*
53853 CAAAGCCCACAAGTCAGTGGCAC
62 CAAAGCCCACAAGTCAGTGGCAT
* * * *
53876 CCTTT-AAAACCTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGACAT-CTCTTCGA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-A
* *
53939 AAGACCACAAGTTAGTGGCAT
64 AAGCCCACAAGTCAGTGGCAT
* * * * * *
53960 CTCTTTAAAAGCCCACAAG-TAATGGCAACTTTTCAAAACCCACAAGTCAGTGGCACCCTTTCAA
1 CT-TTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
54024 AGCCCACAAGTTAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
** * * * *
54044 CCTTTT-AAAGCCCACAAGTTAGTAACACCCTTTCAAAGCCCACAAGTTAGTGGTATCCTTTTAA
1 -CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
54108 AGCCCACAAGTCAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * *
54128 CTTTTCAAAGGCCACAAGTTAGTGGCA-CCTTTTCAATGCCCATAAGTTAGTGGCATCCTTTGAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCC-TTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
54192 AGCCCATAAGTCAGTGGCAT
65 AGCCCACAAGTCAGTGGCAT
* * * * * **
54212 CCTTTCAAAGCTCACAAGTCAGTGGCAT-CTCTTCAAAAGCCTAGAAGTCAGTGGCATATTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCT-TTC-AAAGCCCACAAGTCAGTGGCATCCTTTCA
*
54276 AAGCCCATAAGTCAGTGGCA-
64 AAGCCCACAAGTCAGTGGCAT
**
54296 CATTTTCAAAGCTTACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT-CTCTTCA
1 C-TTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCT-TTC-
*
54360 AAAGACCACAAGTCAGTGGCAT
63 AAAGCCCACAAGTCAGTGGCAT
* * * * **
54382 CTCTTCAAAAGACCACAAGTTAGTGGCATCCTTTTAAAGCCCACAAGTTAGTGGCATATTTTCAA
1 CTTTTC-AAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAA
*
54447 AGCCCACAAGTCAGTGGCAC
65 AGCCCACAAGTCAGTGGCAT
* * * * *
54467 CCTTTCAAAGCCCATAAGTTAGTGGCATTCTTTTAAAGCCCACAAGTCAGCGGCATCCTTTCAAA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
* *
54532 GCCCACAAGTTAGTGGCAC
66 GCCCACAAGTCAGTGGCAT
* * * * * * *
54551 CCTTTCAAAGCCCACAAGTTAATGGCATACCATTTCAAAGCTTACACAAATCAATGGCACCCTTC
1 CTTTTCAAAGCCCACAAGTTAGTGGCAT-CC-TTTCAAAGC--CCACAAGTCAGTGGCATCCTTT
* *
54616 CAAAGCCCATAAGTCAGTGGCACC
62 CAAAGCCCACAAGTCAGTGGCA-T
* * * * * *
54640 CGTTT-AAAACCTACAAGTTAGTGGTACCCCTTCAAAGCCCACAAGTCAGTGGCATCCCCTTTCA
1 CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCAT--CCTTTCA
54704 AAGCCCACA
64 AAGCCCACA
54713 CAAGTCGATG
Statistics
Matches: 8922, Mismatches: 1328, Indels: 721
0.81 0.12 0.07
Matches are distributed among these distances:
80 2 0.00
81 2 0.00
82 77 0.01
83 659 0.07
84 4364 0.49
85 2337 0.26
86 823 0.09
87 122 0.01
88 65 0.01
89 15 0.00
90 11 0.00
91 10 0.00
92 9 0.00
93 2 0.00
94 13 0.00
95 322 0.04
96 89 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (84 bp):
CTTTTCAAAGCCCACAAGTTAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAA
GCCCACAAGTCAGTGGCAT
Found at i:44535 original size:28 final size:28
Alignment explanation
Indices: 44493--44923 Score: 525
Period size: 28 Copynumber: 15.4 Consensus size: 28
44483 TTAGTGGCAT
* * *
44493 GTCAGTAGCAACCTTTCAAATCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
44521 GTCAGTAGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
44549 GTCAGTGGCAT-CTCTTCAAAAGCTCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
44578 GTTAGTGGCAT-TTTTCCAAAGCCCACAA
1 GTCAGTGGCATCCTTT-CAAAGCCCACAA
* * *
44606 GTCAATGGTA-CCTTTTTAAAGCCCACAA
1 GTCAGTGGCATCC-TTTCAAAGCCCACAA
* *
44634 GTTAATGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
44662 GTTAGTGGCAT-CTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
44689 GTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
44717 GTGAGTGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
44745 GTCAATGGCAT-CTCTTCAAAAACCCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* *
44774 GTCAATGGCATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
44802 GTCAGTGGCACCCTTT-AAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
44829 GTTAGAGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
44857 GTCAGTGACATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
44885 GTCAGTGGCA-CTCTTTCAAAGCCCACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
44913 GTCAGTGGCAT
1 GTCAGTGGCAT
44924 GTCAGTAGCA
Statistics
Matches: 351, Mismatches: 39, Indels: 25
0.85 0.09 0.06
Matches are distributed among these distances:
27 53 0.15
28 246 0.70
29 51 0.15
30 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (28 bp):
GTCAGTGGCATCCTTTCAAAGCCCACAA
Found at i:44942 original size:39 final size:39
Alignment explanation
Indices: 44885--44962 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
44875 AAGCCCACAA
* * *
44885 GTCAGTGGCACTCTTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCCTTCAAAGCCCACAAGTCAGTGGCAT
44924 GTCAGTAGCACCCCTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCCTTCAAAGCCCACAAGTCAGTGGCAT
44963 CCTTTTAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.21
Consensus pattern (39 bp):
GTCAGTAGCACCCCTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:44972 original size:28 final size:28
Alignment explanation
Indices: 44924--45355 Score: 442
Period size: 28 Copynumber: 15.4 Consensus size: 28
44914 TCAGTGGCAT
* * *
44924 GTCAGTAGCACCCCTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
*
44952 GTCAGTGGCATCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* **
44980 GTCAGTGGCAT-ATCTTCAAAAGCTAACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * * *
45009 GTTAGTAGCAT-TTTTCCAATGCCCACAA
1 GTCAGTGGCATCCTTT-CAAAGCCCACAA
* * * *
45037 GTCAATGGTACCCTTTTAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
45065 GTTAGTGGCGTCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* * * *
45093 GTTAATGGCTTCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
45121 CTCAGTGGCACCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
45149 GTTAGTGGCATCGTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
45177 GTCAATGGCAT-CTCTTCAAAAACCCACAA
1 GTCAGTGGCATCCT-TTC-AAAGCCCACAA
* * *
45206 GTCAATGGCATCTTTTCAAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
45234 GTCAGTGGCACCCTTT-AAAGCCTACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
45261 GTTAGAGGCATCCTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
* *
45289 GTCAGTGACATCTTTTCAAAGCCCACAA
1 GTCAGTGGCATCCTTTCAAAGCCCACAA
45317 GTCAGTGGCA-CTCTTTCAAAGCCCACAA
1 GTCAGTGGCATC-CTTTCAAAGCCCACAA
*
45345 GTTAGTGGCAT
1 GTCAGTGGCAT
45356 GTCAGTAGCA
Statistics
Matches: 332, Mismatches: 62, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
27 27 0.08
28 257 0.77
29 47 0.14
30 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (28 bp):
GTCAGTGGCATCCTTTCAAAGCCCACAA
Found at i:45372 original size:39 final size:39
Alignment explanation
Indices: 45317--45394 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
45307 AAGCCCACAA
* * *
45317 GTCAGTGGCACTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
45356 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
45395 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTCAGTGGCAT
Found at i:45398 original size:28 final size:28
Alignment explanation
Indices: 45367--47168 Score: 1897
Period size: 28 Copynumber: 64.0 Consensus size: 28
45357 TCAGTAGCAC
*
45367 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
45395 CCTTTCAAAGCCCACAAGTCAATGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
45422 CCTCTTCAAAAGCTCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * * *
45452 -TTTTCCAAAGCCCACAAGTCAATGGTAC
1 CCTTT-CAAAGCCCACAAGTTAGTGGCAT
*
45480 CCTTTTAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
45508 CCTTTCAAAGCCCACAAGTTAATGGCTT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * * *
45536 CTTTTCCAAGCCCAAAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
45564 CCTTTCAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
45592 CCTTTCAAAGCCCATAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
45620 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
45648 CTTTTCAAAGCCCACAAGTCAGTAGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
45675 CTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
45704 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * ** *
45732 CTTTTCGAATACCACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
45760 CCTTTCAAAGCCTACAAGTCAGGGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
45788 CCTTTCAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
45816 -CTCTTCAAAAGCCCACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
45845 -CTCTTCAAAAGCCTACAAGTCAGTGCCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *** *
45874 CATTTCAAAGCCCACAAGTCAGCAACAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
45902 CCTTTTAAGGCGCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
45930 CTTTTCAAATCACACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
** *
45958 -CTATTCAAAAGAACACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
*
45987 -CTCTTCAAAAGACCC-TAAGTTAGTGGCAT
1 CCT-TTC-AAAG-CCCACAAGTTAGTGGCAT
*
46016 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
46044 -CTTATCAAAGCCCACAAGTCAGTGGCAC
1 CCTT-TCAAAGCCCACAAGTTAGTGGCAT
46072 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
46100 CCTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
46127 CCATTTTAAAGCCCACAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
46156 CCTTTCAAAACTCACAAGTGAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
46184 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * **
46212 CTTTTCAAAACAAACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
46240 -CTCTTCAAAAGCCCACAAGTCAGTCGTAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
46269 CTTTTCAAAGCCCATAAATGAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
46296 CCATTTCAAAACCCACAAGTTAGTGACAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* *
46325 CTTTTCAAAACCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
46353 -CTCTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
46382 CTTTTCAAAAGACCACAAGTCAGTGGCAT
1 CCTTTC-AAAGCCCACAAGTTAGTGGCAT
* * *
46411 -TTCTTCAAAAGACCACAGGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
46440 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
46468 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
46496 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
46524 CCTTTCAAAGCCCATAAGTTAGT--AAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
46550 ACTCTTTCAAAGCCCACAAGTCAATGACAT
1 -C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
46580 CTCTTTAAAAACCCACAAGTCAATGGCA-
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * * * *
46608 CCTTTTTAAATCCCACAAGTCAGTGACAC
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
*
46637 CCTTT-AAAGCCTACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
46664 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
46692 -CTGTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
46721 CTCTTTAAAAGCCCACAAG-TAATGGCAA
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
46749 CTTTTCAAAACCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
46777 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *** *
46805 CCTTTTAAAGCCCACAAGTTAGTAATAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
46833 CCTTTCAAAGCCTACAAGTTAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
46861 CCTTTTAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
46889 CCTTTCAAAGCCCACAAGTCAGTGGTA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
46916 CCTTTTCAAAGCCCACAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
46945 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
46973 CCTTTCAAAGCTCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
47001 -CTCTTCAAAAACCCACAAGTAAATGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
47030 CTTTTCAAAGCCTACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
47058 CCTTT-AAAGCCTACAAGTTAGAGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
47085 CCTTTCAAAGCTCACAAGTCAGTGACAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
47113 CTTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
47140 CTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
47169 GTCAGTAGCA
Statistics
Matches: 1500, Mismatches: 225, Indels: 97
0.82 0.12 0.05
Matches are distributed among these distances:
26 2 0.00
27 87 0.06
28 1099 0.73
29 298 0.20
30 12 0.01
31 2 0.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (28 bp):
CCTTTCAAAGCCCACAAGTTAGTGGCAT
Found at i:47185 original size:39 final size:39
Alignment explanation
Indices: 47130--47207 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
47120 AAGCCCACAA
* *
47130 GTCAGTGGCACTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
47169 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
47208 CCTTTCAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
Found at i:47220 original size:28 final size:28
Alignment explanation
Indices: 47180--48979 Score: 1879
Period size: 28 Copynumber: 64.0 Consensus size: 28
47170 TCAGTAGCAC
47180 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
47208 CCTTTCAAAGCCCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
47236 -CTCTTCAAAAGCTCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
47265 -TTTTCCAAAGCCCACAAGTCAATGGTA-
1 CCTTT-CAAAGCCCACAAGTTAGTGGCAT
*
47292 CTCTTTTAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* *
47321 CCTTTCAAAGCCCACAAGTTAATGGCTT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * * *
47349 CTTTTCCAAGCCCAAAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
47377 CCTTTCAAAGCCCACAAGTAAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
47405 CCTTTCAAAGCCCATAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
47433 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
47461 CTTTTCAAAGCCCACAAGTCAGTAGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
47488 CTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
47517 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * ** *
47545 CTTTTCGAATACCACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
47573 CCTTTCAAAGCCTACAAGTCAGGGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
47601 CCTTTCAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
47629 -CTCTTCAAAAGCCCACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
47658 -CTCTTCAAAAGCCTACAAGTCAGTGCCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * ** *
47687 CATTTCAAAGCCCACAAGTCAGCAGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
47715 CCTTTTAAGGCGCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
47743 CTTTTCAAATCACACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* ** *
47771 -TTATTCAAAAGAACACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* *
47800 CTTTTCAAAAGACCC-TAAGTTAGTGGCAT
1 CCTTTC-AAAG-CCCACAAGTTAGTGGCAT
*
47829 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
47857 -CTTATCAAAGCCCACAAGTCAGTGGCAC
1 CCTT-TCAAAGCCCACAAGTTAGTGGCAT
47885 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
47913 CCTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
47940 CCATTTTAAAGCCCACAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
47969 CCTTTCAAAACTCACAAGTGAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
47997 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * **
48025 CTTTTCAAAACAAACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
48053 -CTCTTCAAAAGCCCACAAGTCAGTCGTAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
48082 CTTTTCAAAGCCCATAAATGAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48109 CCATTTCAAAACCCACAAGTTAGTGACAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* *
48138 CTTTTCAAAACCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
48166 -CTCTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
48195 CTTTTCAAAAGACCACAAGTCAGTGGCAT
1 CCTTTC-AAAGCCCACAAGTTAGTGGCAT
* * *
48224 -TTCTTCAAAAGACCACAGGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
48253 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48281 CTTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
48308 CCCTTCAAAG-CCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48335 CCTTTCAAAGCCCATAAGTTAGT--AAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
48361 ACTCTTTCAAAGCCCACAAGTCAATGACAT
1 -C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
48391 CTCTTTAAAAACCCACAAGTCAATGGCA-
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
48419 CCTTTTTAAAGCCCACAAGTCAGTGACAC
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
*
48448 CCTTT-AAAGCCTACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
48475 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
48503 -CTGTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
48532 CTCTTTAAAAGCCCACAAG-TAATGGCAA
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
48560 CTTTTCAAAACCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
48588 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *** *
48616 CCTTTTAAAGCCCACAAGTTAGTAATAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48644 CCTTTCAAAGCCTACAAGTTAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48672 CCTTTTAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48700 CCTTTCAAAGCCCACAAGTCAGTGGTA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
48727 CCTTTTCAAAGCCCACAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
48756 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
48784 CCTTTCAAAGCTCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
48812 -CTCTTCAAAAACCCACAAGTAAATGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
48841 CTTTTCAAAGCCTACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48869 CCTTT-AAAGCCTACAAGTTAGAGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
48896 CCTTTCAAAGCTCACAAGTCAGTGACAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
48924 CTTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
48951 CTCTTTTAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
48980 GTCAGTAGCA
Statistics
Matches: 1496, Mismatches: 224, Indels: 103
0.82 0.12 0.06
Matches are distributed among these distances:
26 17 0.01
27 105 0.07
28 1060 0.71
29 300 0.20
30 12 0.01
31 2 0.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (28 bp):
CCTTTCAAAGCCCACAAGTTAGTGGCAT
Found at i:49001 original size:39 final size:39
Alignment explanation
Indices: 48941--49018 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
48931 AAGCCCACAA
* * *
48941 GTCAGTGGCACTCTTTTAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
48980 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
49019 CCTTTCAAAG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
Found at i:49031 original size:28 final size:28
Alignment explanation
Indices: 48991--50764 Score: 1816
Period size: 28 Copynumber: 63.0 Consensus size: 28
48981 TCAGTAGCAC
48991 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
49019 CCTTTCAAAGCCCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
49047 -CTCTTCAAAAGCTCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
49076 -TTTTCCAAAGCCCACAAGTCAATGGTA-
1 CCTTT-CAAAGCCCACAAGTTAGTGGCAT
*
49103 CTCTTTTAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* *
49132 CCTTTCAAAGCCCACAAGTTAATGGCTT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * * *
49160 CTTTTCCAAGCCCAAAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
49188 CCTTTCAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
49216 CCTTTCAAAGCCCATAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
49244 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
49272 CTTTTCAAAGCCCACAAGTCAGTAGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
49299 CTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
49328 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * ** *
49356 CTTTTCGAATACCACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
49384 CCTTTCAAAGCCTACAAGTCAGGGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
49412 CCTTTCAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
49440 -CTCTTCAAAAGCCCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
49469 -CTCTTCAAAAGCCTACAAGTCAGTGCCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * **
49498 CATTTCAAATCCCACAAGTCAGCAGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
49525 CTCTTTTAAGGCGCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
49554 CTTTTCAAATCACACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
** *
49582 -CTATTCAAAAGAACACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
*
49611 -CTCTTCAAAAGACCC-TAAGTTAGTGGCAT
1 CCT-TTC-AAAG-CCCACAAGTTAGTGGCAT
* *
49640 CCTTTCAAAGCCCACAAGTCATTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
49668 -CTTATCAAAGCCCACAAGTCAGTGGCAC
1 CCTT-TCAAAGCCCACAAGTTAGTGGCAT
49696 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
49724 CCTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
49751 CCATTTTAAAGCCCACAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
49780 CCTTTCAAAACTCACAAGTGAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
49808 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * **
49836 CTTTTCAAAACAAACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
49864 -CTCTTCAAAAGCCCACAAGTCAGTCGTAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * * *
49893 CTTTTCAAAGCCCATAAATGAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
49921 CCTTTCAAAACCCACAAGTTAGTGACAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* **
49949 CTTTTCAAAAACCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
49977 -GTCTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * **
50006 CTTTTCAAAAGACCACAAGTCCGTGGCAT
1 CCTTTC-AAAGCCCACAAGTTAGTGGCAT
* * *
50035 -TTCTTCAAAAGACCACAGGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
50064 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50092 CTTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50120 CCTTTCAAAGCCCATAAGTTAGT--AAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
50146 ACTCTTTCAAAGCCCACAAGTCAATGACAT
1 -C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
50176 CTCTTTAAAAACCCACAAGTCAATGGCA-
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
50204 CCTTTTTAAAGCCCACAAGTTAGTGACAC
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
*
50233 CCTTT-AAAGCCTACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50260 CCTTTCAAAGCCCACAAGTCATTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
50288 -CTGTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
50317 CTCTTTAAAAGCCCACAAG-TAATGGCAA
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
50345 CTTTTCAAAACCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
50373 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *** *
50401 CCTTTTAAAGCCCACAAGTTAGTAATAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50429 CCTTTCAAAGCCTACAAGTTAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50457 CCTTTTAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50485 CCTTTCAAAGCCCACAAGTCAGTGGTA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
50512 CCTTTTCAAAGCCCACAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
*
50541 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
50569 CCTTTCAAAGCTCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
50597 -CTCTTCAAAAACCCACAAGTAAATGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
50626 CTTTTCAAAGCCTACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50654 CCTTT-AAAGCCTACAAGTTAGAGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
50681 CCTTTCAAAGCTCACAAGTCAGTGACAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50709 CTTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
50736 CTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
50765 GTCAGTAGCA
Statistics
Matches: 1468, Mismatches: 228, Indels: 99
0.82 0.13 0.06
Matches are distributed among these distances:
26 2 0.00
27 88 0.06
28 1067 0.73
29 297 0.20
30 12 0.01
31 2 0.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.25
Consensus pattern (28 bp):
CCTTTCAAAGCCCACAAGTTAGTGGCAT
Found at i:50781 original size:39 final size:39
Alignment explanation
Indices: 50726--50803 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
50716 AAGCCCACAA
* *
50726 GTCAGTGGCACTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
50765 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
1 GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
50804 CCTTTCAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (39 bp):
GTCAGTAGCACCCTTTCAAAGCCCACAAGTTAGTGGCAT
Found at i:50816 original size:28 final size:28
Alignment explanation
Indices: 50776--54712 Score: 4006
Period size: 28 Copynumber: 139.6 Consensus size: 28
50766 TCAGTAGCAC
50776 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50804 CCTTTCAAAGCCCACAAGTCACTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
50832 -CTCTTCAAAAGCTCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
50861 -TTTTCCAAAGCCCACAAGTCAATGGTA-
1 CCTTT-CAAAGCCCACAAGTTAGTGGCAT
*
50888 CTCTTTTAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* *
50917 CCTTTCAAAGCCCACAAGTTAATGGCTT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * * *
50945 CTTTTCCAAGCCCAAAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
50973 CCTTTCAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
51001 CCTTTCAAAGCCCATAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
51029 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
51057 CTTTTCAAAGCCCACAAGTCAGTAGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
51084 CTCTTTCAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
51113 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * ** *
51141 CTTTTCGAATACCACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
51169 CCTTTCAAAGCCTACAAGTCAGGGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
51197 CCTTTCAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
51225 -CTCTTCAAAAGCCCACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
51254 -CTCTTCAAAAGCCTACAAGTCAGTGCCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * ** *
51283 CATTTCAAAGCCCACAAGTCAGCAGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
51311 CCTTTTAAGGCGCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
51339 CTTTTCAAATCACACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
** *
51367 -CTATTCAAAAGAACACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* *
51396 -CTCTTCAAAAGACCATAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
*
51425 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
51453 -CTTATCAAAGCCCACAAGTCAGTGGCAC
1 CCTT-TCAAAGCCCACAAGTTAGTGGCAT
51481 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
51509 CCTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
51537 CCTTTTAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
51565 CCTTTCAAAACTCACAAGTGAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
51593 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * **
51621 CTTTTCAAAACAAACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
51649 -CTCTTCAAAAGCCCACAAGTCAGTCGTAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * * *
51678 CTTTTCAAAGCCCATAAATGAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
51706 CCTTTCAAAACCCACAAGTTAGTGACAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
51734 CTTTTCAAAACCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
51762 -CTCTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
51791 CTTTTCAAAAGACCACAAGTCAGTGGCAT
1 CCTTTC-AAAGCCCACAAGTTAGTGGCAT
* * *
51820 -TTCTTCAAAAGACCACAGGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
*
51849 CCTTTCAAAGCCCACAAGTTTGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
51877 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
51905 CCTTTCAAAGCCCACAAGTTAGTGGCAA
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *** *
51933 CCTTTCAAAGCCCATAAGTTAGTAATAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
51961 CCTTTCAAAGCCCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
51989 CTCTTTAAAAACCCACAAGTCAATGGCA-
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
52017 CCTTTTTAAAGCCCACAAGTCAGTGACAC
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* *
52046 CCTTT-AAGGCCTACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
52073 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
52101 -CTGTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
52130 CTCTTTAAAAGCCCACAAG-TAATGGCAA
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
52158 CTTTTCAAAACCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
52186 CTTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *** *
52214 CCTTTTAAAGCCCACAAGTTAGTAATAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52242 CCTTTCAAAGCCTACAAGTTAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52270 CCTTTTAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52298 CCTTTCAAAGCCCACAAGTCAGTGGTA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
52325 CCTTTTCAAAGCCCACAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
*
52354 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
52382 CCTTTCAAAGCTCACAAATCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
52410 -CTCTTCAAAAACCCACAAGTCAATGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
52439 CTTTTCAAAGCCTACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
52467 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52495 CCTTTCAAAGCTCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
52523 -CTATTCAAAAGCCCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
52552 CCTTTCAATGCCCACGAGTCAGTGACA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
52579 CATTTTCAAAGCCTACAAGTTAGTAGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
52608 CCTTTCAAAGCCTACAAGTCAGTTGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
52636 -CTCTTCAAAAGCTCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
52665 -TTTTCCAAAGCCCACAAGTTAGTGGTAC
1 CCTTT-CAAAGCCCACAAGTTAGTGGCAT
* *
52693 CCTTTTAAATCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52721 CCTTTCAAAGCCCACAAGTTAATGGCTT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
52749 CTTTTCAAAGCCCACAAGTAAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52777 CCTTTGAAAGCCCACAAGTAAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52805 CCTTTTAAAGCCCACGAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52833 CCTTTCAAAACCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
52861 CTTTTCAAAGCCCACAAGTCAGTAGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52888 CTCTATGAAAGCCCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
*
52917 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* ** * *
52945 CTTTTTGAAGACCACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
52973 CCTTTCAAAGCCCACAAGTCAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
53001 CTTTTCGAAA-ACCACAAGTTAGTGGCAC
1 CCTTTC-AAAGCCCACAAGTTAGTGGCAT
*
53029 CCTTTCAAAGCCTACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
53057 CCTTTCAATGCCTACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53085 -CTCTTCAAAAGCACATAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
53114 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
53142 CCTTTTAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53170 CCTTTTAAAGCCCACATGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53198 CCTTTCAAAACCCACAGGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
** *
53226 -CTCTTCAAAAGAACACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * *
53255 -CTCTTCAAAAGACCATAAGTCAGTGGTAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
*
53284 CCTTTCAAAATCCC-CAAGTTAGTGGCAT
1 CCTTTC-AAAGCCCACAAGTTAGTGGCAT
* * *
53312 -CTTATCAAAGCCCATAAGTCAGTGGCAC
1 CCTT-TCAAAGCCCACAAGTTAGTGGCAT
53340 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
53368 CCTTTCAAAGCCCACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
53396 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
53424 CCTTTCAAAACTCACAAGTCAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53452 CATTACAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53480 CTTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
53508 -TTCTTCAAAAACCCATAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * * * * *
53537 CTTTTCAAAGCCCATAAATGAATGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
53565 CCTTTCAAAGCCCACAAGTTAGTGACAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53593 CTTTTCAAAACCCACAA-TTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTT-AGTGGCAT
* *
53621 -CTCTTCAAAAGACCACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* *
53650 -CTCTTCAAAAGACCACAGGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* *
53679 CTTTTTAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53707 CTTTTCAAAGCCCACAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
53734 CGCTTTCAAAGCTCACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53763 CCTTTCAAAGCCCATAAGTGAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
53791 CCTTTCAAAGCCCATAAGTCTA-TGGCAT
1 CCTTTCAAAGCCCACAAGT-TAGTGGCAT
* * *
53819 -CTCTTCAAAAAG-CCAAAAGTCAATGGCAT
1 CCT-TTC--AAAGCCCACAAGTTAGTGGCAT
* * *
53848 CTTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53876 CCTTT-AAAACCTACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
53903 CCTTTCAAAGCCCACAAGTCAGTGACAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
53931 -CTCTTCGAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
* * *
53960 CTCTTTAAAAGCCCACAAG-TAATGGCAA
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
53988 CTTTTCAAAACCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
54016 CCTTTCAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* ** *
54044 CCTTTTAAAGCCCACAAGTTAGTAACAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
54072 CCTTTCAAAGCCCACAAGTTAGTGGTAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
54100 CCTTTTAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
54128 CTTTTCAAAGGCCACAAGTTAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
54155 CCTTTTCAATGCCCATAAGTTAGTGGCAT
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* * *
54184 CCTTTGAAAGCCCATAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
54212 CCTTTCAAAGCTCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * *
54240 -CTCTTCAAAAGCCTAGAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
** * *
54269 ATTTTCAAAGCCCATAAGTCAGTGGCA-
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* **
54296 CATTTTCAAAGCTTACAAGTTAGTGGCAT
1 C-CTTTCAAAGCCCACAAGTTAGTGGCAT
*
54325 CCTTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* *
54353 -CTCTTCAAAAGACCACAAGTCAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
*
54382 -CTCTTCAAAAGACCACAAGTTAGTGGCAT
1 CCT-TTC-AAAGCCCACAAGTTAGTGGCAT
*
54411 CCTTTTAAAGCCCACAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
** * *
54439 ATTTTCAAAGCCCACAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
54467 CCTTTCAAAGCCCATAAGTTAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
54495 TCTTTTAAAGCCCACAAGTCAGCGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
54523 CCTTTCAAAGCCCACAAGTTAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
*
54551 CCTTTCAAAGCCCACAAGTTAATGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * * *
54579 ACCATTTCAAAGCTTACACAAATCAATGGCAC
1 -CC-TTTCAAAGC--CCACAAGTTAGTGGCAT
* * * *
54611 CCTTCCAAAGCCCATAAGTCAGTGGCAC
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
* * * *
54639 CCGTTT-AAAACCTACAAGTTAGTGGTAC
1 CC-TTTCAAAGCCCACAAGTTAGTGGCAT
* *
54667 CCCTTCAAAGCCCACAAGTCAGTGGCAT
1 CCTTTCAAAGCCCACAAGTTAGTGGCAT
54695 CCCCTTTCAAAGCCCACA
1 --CCTTTCAAAGCCCACA
54713 CAAGTCGATG
Statistics
Matches: 3293, Mismatches: 515, Indels: 200
0.82 0.13 0.05
Matches are distributed among these distances:
27 134 0.04
28 2458 0.75
29 622 0.19
30 60 0.02
31 6 0.00
32 13 0.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (28 bp):
CCTTTCAAAGCCCACAAGTTAGTGGCAT
Found at i:54897 original size:25 final size:25
Alignment explanation
Indices: 54869--54943 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
54859 ATTAGCTCAA
54869 TGTCGCTAGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
* * * *
54894 TGTC-C-A-CCTT-TATTAGCTCAA
1 TGTCGCTAGCCTTGAATCAGCACAT
* *
54915 TGTCGTTGGCCTTGAATCAGCACAT
1 TGTCGCTAGCCTTGAATCAGCACAT
54940 TGTC
1 TGTC
54944 CACTTTTCCC
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 11 0.31
22 4 0.11
23 1 0.03
24 5 0.14
25 15 0.42
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (25 bp):
TGTCGCTAGCCTTGAATCAGCACAT
Found at i:54913 original size:46 final size:47
Alignment explanation
Indices: 54830--55037 Score: 260
Period size: 48 Copynumber: 4.4 Consensus size: 47
54820 CCGATATCGC
* * * *
54830 TGGCATTGAATCAGCATATTG-GCACCTTT-ATTAGCTCAATGTCGC
1 TGGCCTTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATGTCGT
*
54875 TAGCCTTGAATCAGCACATTGTCCACCTTT-ATTAGCTCAATGTCGT
1 TGGCCTTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATGTCGT
* *
54921 TGGCCTTGAATCAGCACATTGTCCACTTTTCCCTTAGCTCAATGTCGT
1 TGGCCTTGAATCAGCACATTGTCCACCTTT-CATTAGCTCAATGTCGT
* * * *
54969 TGGCCTTGAATCAGCACATTGTCAACTTTTCCCTTAGCTCGATGTCGT
1 TGGCCTTGAATCAGCACATTGTCCACCTTT-CATTAGCTCAATGTCGT
**
55017 TGGCCTTGAATTGGCACATTG
1 TGGCCTTGAATCAGCACATTG
55038 GCACTCTTCT
Statistics
Matches: 148, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
45 18 0.12
46 50 0.34
48 80 0.54
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (47 bp):
TGGCCTTGAATCAGCACATTGTCCACCTTTCATTAGCTCAATGTCGT
Found at i:54918 original size:21 final size:22
Alignment explanation
Indices: 54851--54919 Score: 68
Period size: 21 Copynumber: 3.0 Consensus size: 22
54841 CAGCATATTG
54851 GCACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
* * * *
54873 GCTAGCCTTGAATCAGCACATTGTC
1 GC-A-CCTT-TATTAGCTCAATGTC
54898 -CACCTTTATTAGCTCAATGTC
1 GCACCTTTATTAGCTCAATGTC
54919 G
1 G
54920 TTGGCCTTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
21 11 0.31
22 6 0.17
23 2 0.06
24 5 0.14
25 11 0.31
ACGTcount: A:0.23, C:0.28, G:0.16, T:0.33
Consensus pattern (22 bp):
GCACCTTTATTAGCTCAATGTC
Found at i:54977 original size:48 final size:48
Alignment explanation
Indices: 54860--55037 Score: 270
Period size: 48 Copynumber: 3.8 Consensus size: 48
54850 GGCACCTTTA
* * * *
54860 TTAGCTCAATGTCGCTAGCCTTGAATCAGCACATTGTCCACCTTT--A
1 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
54906 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
1 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
*
54954 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACATTGTCAACTTTTCCC
1 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
* **
55002 TTAGCTCGATGTCGTTGGCCTTGAATTGGCACATTG
1 TTAGCTCAATGTCGTTGGCCTTGAATCAGCACATTG
55038 GCACTCTTCT
Statistics
Matches: 122, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 42 0.34
48 80 0.66
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (48 bp):
TTAGCTCAATGTCGTTGGCCTTGAATCAGCACATTGTCCACTTTTCCC
Found at i:55749 original size:40 final size:40
Alignment explanation
Indices: 55689--55853 Score: 179
Period size: 40 Copynumber: 3.9 Consensus size: 40
55679 TTTTACCCAG
55689 ATGTATCGATACAGTT-TTCAATGTATCGATACATGTATAA
1 ATGTATCGATACA-TTCTTCAATGTATCGATACATGTATAA
*
55729 ATGTATCGATACATTCTTCAATGTATCGATACATTCTATTTTTTTACCCA
1 ATGTATCGATACATTCTTCAATGTATCGATACA-TGTA------TA---A
* *
55779 GATGTATCGATACATTTTTCAATGTATCGATACATGTATGA
1 -ATGTATCGATACATTCTTCAATGTATCGATACATGTATAA
*
55820 ATGTATCGATACATTCTTCAATGTATCGTTACAT
1 ATGTATCGATACATTCTTCAATGTATCGATACAT
55854 TCTATCTTTT
Statistics
Matches: 107, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
39 2 0.02
40 62 0.58
41 4 0.04
44 1 0.01
47 2 0.02
50 4 0.04
51 32 0.30
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.41
Consensus pattern (40 bp):
ATGTATCGATACATTCTTCAATGTATCGATACATGTATAA
Found at i:55786 original size:91 final size:92
Alignment explanation
Indices: 55678--55904 Score: 395
Period size: 91 Copynumber: 2.5 Consensus size: 92
55668 AAAAAGCACA
*
55678 TTTTTACCCAGATGTATCGATACAGTTTTCAATGTATCGATACATGTATAAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATAAATGTATCGATACAT
55743 TCTTCAATGTATCGATACATTCTAT-T
66 TCTTCAATGTATCGATACATTCTATCT
*
55769 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATAAATGTATCGATACAT
*
55834 TCTTCAATGTATCGTTACATTCTATCT
66 TCTTCAATGTATCGATACATTCTATCT
* *
55861 TTTTT-TCCAAATGTATCGATACATTTTTCAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACAT
55905 CTAGTTAAAA
Statistics
Matches: 130, Mismatches: 5, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
91 124 0.95
92 6 0.05
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (92 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATAAATGTATCGATACAT
TCTTCAATGTATCGATACATTCTATCT
Found at i:55855 original size:20 final size:20
Alignment explanation
Indices: 55689--55856 Score: 135
Period size: 20 Copynumber: 7.8 Consensus size: 20
55679 TTTTACCCAG
55689 ATGTATCGATACAGTT-TTCA
1 ATGTATCGATACA-TTCTTCA
* *
55709 ATGTATCGATACATGT-ATAA
1 ATGTATCGATACAT-TCTTCA
55729 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
55749 ATGTATCGATACATTCTATTTTTTTACCCA
1 ATGTATCGATACATTC-------TT---CA
*
55779 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTCTTCA
* *
55800 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
55820 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
*
55840 ATGTATCGTTACATTCT
1 ATGTATCGATACATTCT
55857 ATCTTTTTTT
Statistics
Matches: 123, Mismatches: 10, Indels: 30
0.75 0.06 0.18
Matches are distributed among these distances:
19 3 0.02
20 96 0.78
21 3 0.02
24 2 0.02
27 2 0.02
30 2 0.02
31 15 0.12
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:55887 original size:21 final size:20
Alignment explanation
Indices: 55863--55904 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
55853 TTCTATCTTT
55863 TTTTCCAAATGTATCGATACA
1 TTTTCC-AATGTATCGATACA
*
55884 TTTTTCAATGTATCGATACA
1 TTTTCCAATGTATCGATACA
55904 T
1 T
55905 CTAGTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.43
Consensus pattern (20 bp):
TTTTCCAATGTATCGATACA
Found at i:59591 original size:22 final size:23
Alignment explanation
Indices: 59549--59601 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
59539 TTATAATAAC
59549 TTAAACTCAATTTAATCCGAATA
1 TTAAACTCAATTTAATCCGAATA
* *
59572 TTAAACTCAA-TTAATTCGAATG
1 TTAAACTCAATTTAATCCGAATA
59594 TTAAACTC
1 TTAAACTC
59602 GATTGCTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
22 18 0.64
23 10 0.36
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.36
Consensus pattern (23 bp):
TTAAACTCAATTTAATCCGAATA
Found at i:61064 original size:41 final size:41
Alignment explanation
Indices: 61005--61086 Score: 121
Period size: 41 Copynumber: 2.0 Consensus size: 41
60995 CAAAGACAAT
* * *
61005 GGAAATCAATTGGAGTAACTTTACATGTGATGGTATTTGAA
1 GGAAATCAATTGAAGTAACTTTACATATGATAGTATTTGAA
61046 GGAAATCAATT-AACGTAACTTTACATATGATAGTATTTGAA
1 GGAAATCAATTGAA-GTAACTTTACATATGATAGTATTTGAA
61087 TATCATTGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 1 0.03
41 36 0.97
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.34
Consensus pattern (41 bp):
GGAAATCAATTGAAGTAACTTTACATATGATAGTATTTGAA
Found at i:64833 original size:15 final size:15
Alignment explanation
Indices: 64813--64843 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
64803 TTTTGTCAAA
64813 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
64828 TCAAGTAAGATTGTG
1 TCAAGTAAGATTGTG
64843 T
1 T
64844 ACAAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35
Consensus pattern (15 bp):
TCAAGTAAGATTGTG
Found at i:66581 original size:25 final size:25
Alignment explanation
Indices: 66519--66588 Score: 99
Period size: 24 Copynumber: 2.8 Consensus size: 25
66509 AATAAAAATT
*
66519 AGCCACCAATTTTGACAAA-CAACA
1 AGCCACCAATTTTGACAAATAAACA
66543 AGCCACCAATTTTGACAAATAAACA
1 AGCCACCAATTTTGACAAATAAACA
*
66568 AGCCTCC-ATATTTGACAAATA
1 AGCCACCAAT-TTTGACAAATA
66589 CAAAGGAAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
24 21 0.50
25 21 0.50
ACGTcount: A:0.44, C:0.26, G:0.09, T:0.21
Consensus pattern (25 bp):
AGCCACCAATTTTGACAAATAAACA
Found at i:66634 original size:27 final size:27
Alignment explanation
Indices: 66573--66643 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
66563 AAACAAGCCT
* *
66573 CCATATTTGACAAATACAAAGGAAACCA
1 CCATTTTTGACAAACACAAA-GAAACCA
66601 CCATTTTTGACAAACACAAA-ATAACCA
1 CCATTTTTGACAAACACAAAGA-AACCA
*
66628 CCATTTTTAACAAACA
1 CCATTTTTGACAAACA
66644 AATGGATGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 20 0.51
28 18 0.46
ACGTcount: A:0.48, C:0.24, G:0.06, T:0.23
Consensus pattern (27 bp):
CCATTTTTGACAAACACAAAGAAACCA
Found at i:71141 original size:24 final size:25
Alignment explanation
Indices: 71113--71182 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
71103 AATAAAAATT
*
71113 AGCCACCAATTTTGACAAA-CAACA
1 AGCCACCAATTTTGACAAATAAACA
71137 AGCCACCAATTTTGACAAATAAACA
1 AGCCACCAATTTTGACAAATAAACA
**
71162 AGCCTTC-ATATTTGACAAATA
1 AGCCACCAAT-TTTGACAAATA
71183 CAAAGGAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
24 21 0.51
25 20 0.49
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.23
Consensus pattern (25 bp):
AGCCACCAATTTTGACAAATAAACA
Found at i:71228 original size:27 final size:27
Alignment explanation
Indices: 71172--71237 Score: 98
Period size: 27 Copynumber: 2.4 Consensus size: 27
71162 AGCCTTCATA
*
71172 TTTGACAAATACAAAGGAAACCACCATT
1 TTTGACAAACACAAA-GAAACCACCATT
71200 TTTGACAAACACAAA-ATAACCACCATT
1 TTTGACAAACACAAAGA-AACCACCATT
71227 TTTGACAAACA
1 TTTGACAAACA
71238 AATGGGTGGC
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 21 0.58
28 14 0.39
ACGTcount: A:0.47, C:0.23, G:0.08, T:0.23
Consensus pattern (27 bp):
TTTGACAAACACAAAGAAACCACCATT
Found at i:71240 original size:24 final size:24
Alignment explanation
Indices: 71115--71240 Score: 83
Period size: 24 Copynumber: 4.9 Consensus size: 24
71105 TAAAAATTAG
* *
71115 CCACCAATTTTGACAAACAACA-AG
1 CCACCATTTTTGACAAACAA-ATAA
* * *
71139 CCACCAATTTTGACAAATAAACAA
1 CCACCATTTTTGACAAACAAATAA
** * *
71163 GCCTTCATATTTGACAAATACAAAGGAAA
1 -CCACCATTTTTGAC-AA-ACAAA--TAA
71192 CCACCATTTTTGACAAACACAAAATAA
1 CCACCATTTTTGAC-AA-AC-AAATAA
71219 CCACCATTTTTGACAAACAAAT
1 CCACCATTTTTGACAAACAAAT
71241 GGGTGGCTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
23 1 0.01
24 24 0.29
25 12 0.15
26 4 0.05
27 20 0.24
28 16 0.20
29 5 0.06
ACGTcount: A:0.46, C:0.25, G:0.07, T:0.22
Consensus pattern (24 bp):
CCACCATTTTTGACAAACAAATAA
Done.