Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1528
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 21884
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Found at i:106 original size:16 final size:16
Alignment explanation
Indices: 85--115 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75 ACAACTCCAA
*
85 ATACCATTCCCTTCAT
1 ATACCATTCACTTCAT
101 ATACCATTCACTTCA
1 ATACCATTCACTTCA
116 AATTAACTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (16 bp):
ATACCATTCACTTCAT
Found at i:6496 original size:32 final size:31
Alignment explanation
Indices: 6395--7191 Score: 520
Period size: 32 Copynumber: 25.1 Consensus size: 31
6385 GTCAAATACC
*
6395 TTCTT-AAAGTCCACGACTCAGTGGCAATCTC
1 TTCTTCAAAGTCCACGACTCAGTGGC-ATCTT
* * *
6426 TTCTT-AAAGCCCATGACTCAATGGCAT-TT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
*
6455 TGTC-TCAAAGTCCACGACTTAGTGGCATCCTT
1 T-TCTTCAAAGTCCACGACTCAGTGGCAT-CTT
* *
6487 TTCATCAAAGTCCACGACTCAGTGGCAATCTC
1 TTCTTCAAAGTCCACGACTCAGTGGC-ATCTT
*
6519 TGC-TCAAAGTCCACGACTCAGTGGCATCCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCAT-CTT
6550 TTCTTCAAAGTCCACGACTCAGTGGCATCCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCAT-CTT
6582 TTCTTCAAAGTCCACGACTCAGTGGCATCCTT
1 TTCTTCAAAGTCCACGACTCAGTGGCAT-CTT
*
6614 TTCTTCAAAGTCCATGACTCAGTGGCAT-TT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
*
6644 TGT-TTCAAAGTCCACGACTTAGTGGCATCCTT
1 T-TCTTCAAAGTCCACGACTCAGTGGCAT-CTT
*
6676 TTCTTCAAAGTCCACGACTTAGTGGCAT-TT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
6706 TGTC-TCAAAGTCCACGACTCAGTGGCATCCTT
1 T-TCTTCAAAGTCCACGACTCAGTGGCAT-CTT
*
6738 TTCTTTAAAGTCCACGACTCAGTGGCAT-TT
1 TTCTTCAAAGTCCACGACTCAGTGGCATCTT
* *
6768 TGTC-TCAAAGTCCACGACTCAATGGCATTTT
1 T-TCTTCAAAGTCCACGACTCAGTGGCATCTT
* * * *
6799 TTCCTTCTAAGTCCACAACTCCGTGGCACCTTT
1 TT-CTTCAAAGTCCACGACTCAGTGGCATC-TT
* * * *
6832 TTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTT
1 TTC--TTCAAAGTCCACGACTCAGTGGCA-TC-TT
** * * **
6867 TTCCTTTTAAGTCCACAACTCCGTGGCA-CCC
1 TT-CTTCAAAGTCCACGACTCAGTGGCATCTT
* * *
6898 TT-TT--AAGCCCACAACTCCGTGGCACTCTTT
1 TTCTTCAAAGTCCACGACTCAGTGGCA-TC-TT
* * * **
6928 TTCCTTCTAAGTCCACAACTCCGTGGCA-CCC
1 TT-CTTCAAAGTCCACGACTCAGTGGCATCTT
* * *
6959 TT-TT--AAGCCCACAACTCCGTGGCACTCTTT
1 TTCTTCAAAGTCCACGACTCAGTGGCA-TC-TT
* * * *
6989 TTCCTTCTAAGTCCACAACTCCGTGGCACCTTT
1 TT-CTTCAAAGTCCACGACTCAGTGGCATC-TT
* * * * *
7022 TTCTTTTTAAAGCCCGCAACTCCGTGGCACTCTTT
1 TTC--TTCAAAGTCCACGACTCAGTGGCA-TC-TT
* * *
7057 TTCCTTCTAAGTCCACAACTCCGTGGCACTCTT
1 TT-CTTCAAAGTCCACGACTCAGTGGCA-TCTT
* * * * *
7090 TTCCCCTTTTAAAGTCCACAACCCCGTGGCACCTT
1 TT---C-TTCAAAGTCCACGACTCAGTGGCATCTT
** * *
7125 GTTACTTTTAAGTCCACGACTCCGTGGCACCTT
1 -TT-CTTCAAAGTCCACGACTCAGTGGCATCTT
* *
7158 CTT-TTCAAAGCCCACAACTCCA-TGGCACTCTT
1 -TTCTTCAAAGTCCACGACT-CAGTGGCA-TCTT
7190 TT
1 TT
7192 TCCTTTTTAA
Statistics
Matches: 646, Mismatches: 71, Indels: 98
0.79 0.09 0.12
Matches are distributed among these distances:
27 38 0.06
29 9 0.01
30 106 0.16
31 85 0.13
32 200 0.31
33 43 0.07
34 123 0.19
35 17 0.03
36 25 0.04
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (31 bp):
TTCTTCAAAGTCCACGACTCAGTGGCATCTT
Found at i:6682 original size:62 final size:62
Alignment explanation
Indices: 6400--6826 Score: 603
Period size: 62 Copynumber: 6.9 Consensus size: 62
6390 ATACCTTCTT
* * * *
6400 AAAGTCCACGACTCAGTGGCAAT-CTCTTCTT-AAAGCCCATGACTCAATGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGC-ATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTTTGTCTC
* * *
6461 AAAGTCCACGACTTAGTGGCATCCTTTTCATCAAAGTCCACGACTCAGTGGCAATCTCTG-CTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
6524 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATCCTTT-TCTTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCAT--TTTGTC-TC
* *
6588 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCATGACTCAGTGGCATTTTGTTTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTTTGTCTC
* *
6650 AAAGTCCACGACTTAGTGGCATCCTTTTCTTCAAAGTCCACGACTTAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTTTGTCTC
*
6712 AAAGTCCACGACTCAGTGGCATCCTTTTCTTTAAAGTCCACGACTCAGTGGCATTTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTTTGTCTC
* * * * *
6774 AAAGTCCACGACTCAATGGCAT-TTTTTCCTTCTAAGTCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCATCCTTTT-CTTCAAAGTCCACGACTCAGTGGCA
6827 CCTTTTTCTT
Statistics
Matches: 332, Mismatches: 25, Indels: 17
0.89 0.07 0.05
Matches are distributed among these distances:
60 2 0.01
61 29 0.09
62 183 0.55
63 60 0.18
64 58 0.17
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (62 bp):
AAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATTTTGTCTC
Found at i:6849 original size:34 final size:33
Alignment explanation
Indices: 6713--7258 Score: 477
Period size: 34 Copynumber: 16.8 Consensus size: 33
6703 TTTTGTCTCA
* * *
6713 AAGTCCACGACTCAGTGGCATCC-TTTT-CTTTA
1 AAGTCCACAACTCCGTGGCA-CCTTTTTCCTTTT
* * **
6745 AAGTCCACGACTCAGTGGCA--TTTTGT-C-TCA
1 AAGTCCACAACTCCGTGGCACCTTTT-TCCTTTT
* ** * *
6775 AAGTCCACGACTCAATGGCA-TTTTTTCCTTCT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
*
6807 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
6840 AAAGCCCACAACTCTGTGGCACTCTTTTTCCTTTT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
6875 AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
6902 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
6936 AAGTCCACAACTCCGTGGCA-C-----CCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
6963 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
6997 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
7030 AAAGCCCGCAACTCCGTGGCACTCTTTTTCCTTCT
1 -AAGTCCACAACTCCGTGGCAC-CTTTTTCCTTTT
*
7065 AAGTCCACAACTCCGTGGCACTCTTTTCCCCTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTT-TCCTTTT
* * *
7100 AAAGTCCACAACCCCGTGGCACCTTGTTACTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* * **
7134 AAGTCCACGACTCCGTGGCACCTTCTT--TTCA
1 AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
7165 AAGCCCACAACTCCATGGCACTCTTTTTCCTTTTT
1 AAGTCCACAACTCCGTGGCAC-CTTTTTCC-TTTT
* * *
7200 AAAGTCCACAACTTCATGGCACCTTGTTCCTTTT
1 -AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
7234 AAGTCCACAACTTCGTGGCATCTTT
1 AAGTCCACAACTCCGTGGCACCTTT
7259 CACCCTTTTT
Statistics
Matches: 431, Mismatches: 52, Indels: 61
0.79 0.10 0.11
Matches are distributed among these distances:
27 49 0.11
29 2 0.00
30 25 0.06
31 27 0.06
32 46 0.11
33 65 0.15
34 139 0.32
35 39 0.09
36 39 0.09
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (33 bp):
AAGTCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:6899 original size:27 final size:27
Alignment explanation
Indices: 6869--6989 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 27
6859 CACTCTTTTT
*
6869 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
6896 CCTTTTAAGCCCACAACTCCGTGGCACTC
1 CCTTTTAAGCCCACAACTCCGTGGCA--C
* *
6925 TTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
1 -----CCTTTTAAGCCCACAACTCCGTGGCAC
6957 CCTTTTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
6984 TCTTTT
1 CCTTTT
6990 TCCTTCTAAG
Statistics
Matches: 81, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
27 55 0.68
29 1 0.01
32 1 0.01
34 24 0.30
ACGTcount: A:0.20, C:0.37, G:0.13, T:0.30
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:6907 original size:61 final size:63
Alignment explanation
Indices: 6796--7223 Score: 515
Period size: 61 Copynumber: 6.5 Consensus size: 63
6786 TCAATGGCAT
*
6796 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCA
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACC----TC-TTTTAAAGCCCACAACTCCGTGGCA
6861 CTC
61 CTC
*
6864 TTTTTCCTTTTAAGTCCACAACTCCGTGGCACC-CTTTT-AAGCCCACAACTCCGTGGCACTC
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTCTTTTAAAGCCCACAACTCCGTGGCACTC
6925 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACC-CTTTT-AAGCCCACAACTCCGTGGCACTC
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTCTTTTAAAGCCCACAACTCCGTGGCACTC
*
6986 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCGCAACTCCGTGGCA
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACC----TC-TTTTAAAGCCCACAACTCCGTGGCA
7051 CTC
61 CTC
* *
7054 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACTCTTTTCCCCTTTTAAAGTCCACAACCCCGTGG
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCAC-C---T---CTTTTAAAGCCCACAACTCCGTGG
7119 CAC-C
59 CACTC
* * * * *
7123 TTGTTACTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCAAAGCCCACAACTCCATGGCACTC
1 TTTTTCCTTCTAAGTCCACAACTCCGTGGCACC-TCTTTT-AAAGCCCACAACTCCGTGGCACTC
* * *
7188 TTTTTCCTTTTTAAAGTCCACAACTTCATGGCACCT
1 TTTTTCC-TTCT-AAGTCCACAACTCCGTGGCACCT
7224 TGTTCCTTTT
Statistics
Matches: 326, Mismatches: 19, Indels: 32
0.86 0.05 0.08
Matches are distributed among these distances:
61 115 0.35
62 4 0.01
63 6 0.02
64 19 0.06
65 6 0.02
66 8 0.02
67 23 0.07
68 91 0.28
69 30 0.09
70 23 0.07
71 1 0.00
ACGTcount: A:0.20, C:0.35, G:0.12, T:0.33
Consensus pattern (63 bp):
TTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTCTTTTAAAGCCCACAACTCCGTGGCACTC
Found at i:7207 original size:100 final size:97
Alignment explanation
Indices: 6713--7253 Score: 470
Period size: 100 Copynumber: 5.5 Consensus size: 97
6703 TTTTGTCTCA
* * * * *
6713 AAGTCCACGACTCAGTGGCATCCTT-TT-CTTTAAAGTCCACGACTCAGTGGCA--TT-TTGTCT
1 AAGTCCACAACTCCGTGGCA-CCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTT-T-T
* * ** *
6773 CAAAGTCCACGACTCAATGGCA-T-TTTTTCCTTCT
63 C-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* * * *
6807 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCAC-C---TT-CT
*
6872 TTT-AAGTCCACAACTCCGTGGCA--C-----CCTTTT
60 TTTCAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* * *
6902 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACC--CTTTT-A
1 AAGTCCACAACTCCGTGGCAC-CTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCA
*
6964 AGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
65 AGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* * * * *
6997 AAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCGCAACTCCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT-AAGTCCACAACTCCGTGGCAC-CTTCTT--T
* *
7062 TCTAAGTCCACAACTCCGTGGCACTCTTTTCCCCTTTT
62 TC-AAGCCCACAACTCCGTGGCACTCTTTT-TCCTTTT
* * *
7100 AAAGTCCACAACCCCGTGGCACCTTGTTACTTTTAAGTCCACGACTCCGTGGCACCTTCTTTTCA
1 -AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTC-
*
7165 AAGCCCACAACTCCATGGCACTCTTTTTCCTTTTT
64 AAGCCCACAACTCCGTGGCACTCTTTTTCC-TTTT
* * *
7200 AAAGTCCACAACTTCATGGCACCTTGTTCCTTTTAAGTCCACAACTTCGTGGCA
1 -AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCA
7254 TCTTTCACCC
Statistics
Matches: 371, Mismatches: 45, Indels: 56
0.79 0.10 0.12
Matches are distributed among these distances:
88 24 0.06
90 1 0.00
93 4 0.01
94 31 0.08
95 91 0.25
96 28 0.08
98 2 0.01
99 2 0.01
100 99 0.27
102 34 0.09
103 24 0.06
104 31 0.08
ACGTcount: A:0.21, C:0.33, G:0.13, T:0.33
Consensus pattern (97 bp):
AAGTCCACAACTCCGTGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTGGCACCTTCTTTTCAA
GCCCACAACTCCGTGGCACTCTTTTTCCTTTT
Found at i:7297 original size:32 final size:31
Alignment explanation
Indices: 7262--7371 Score: 141
Period size: 33 Copynumber: 3.5 Consensus size: 31
7252 CATCTTTCAC
* *
7262 CCTTTTTAAAGCCCACACAAGTTGGTGGTAA
1 CCTTTTTAAAGCCCACACAAGTCGGTGGCAA
* *
7293 CCCTTCTCAAAGCCCACACAAGTCGGTGGCAA
1 -CCTTTTTAAAGCCCACACAAGTCGGTGGCAA
7325 CCTTTCTCTAAAGCCCACACAAGTCGGTGGCAA
1 CCTTT-T-TAAAGCCCACACAAGTCGGTGGCAA
*
7358 CCTTTCT-AAGCCCA
1 CCTTTTTAAAGCCCA
7372 ATATCGCTGG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
30 7 0.10
31 5 0.07
32 28 0.41
33 29 0.42
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (31 bp):
CCTTTTTAAAGCCCACACAAGTCGGTGGCAA
Found at i:7343 original size:33 final size:33
Alignment explanation
Indices: 7268--7364 Score: 160
Period size: 33 Copynumber: 3.0 Consensus size: 33
7258 TCACCCTTTT
* * *
7268 TAAAGCCCACACAAGTTGGTGGTAACCCTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTTCTC
7301 -AAAGCCCACACAAGTCGGTGGCAACCTTTCTC
1 TAAAGCCCACACAAGTCGGTGGCAACCTTTCTC
7333 TAAAGCCCACACAAGTCGGTGGCAACCTTTCT
1 TAAAGCCCACACAAGTCGGTGGCAACCTTTCT
7365 AAGCCCAATA
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
32 29 0.48
33 31 0.52
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.22
Consensus pattern (33 bp):
TAAAGCCCACACAAGTCGGTGGCAACCTTTCTC
Found at i:7422 original size:49 final size:49
Alignment explanation
Indices: 7364--8123 Score: 786
Period size: 43 Copynumber: 16.1 Consensus size: 49
7354 GCAACCTTTC
* *
7364 TAAGCCCAATATCGCTGGCCTTGGATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
7413 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTAGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
7456 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAT-TT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
7504 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
7547 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
7596 AAAGTCCAATGTAGCTGGCCTTGAATCAG-AGCATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCA-TATTGGCACCTTCATCTT
*
7639 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
7688 TAAGTCCATTGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
7731 TAAGTCTAATATCGCTGGCCTTTAATCAGCATATTGGCACCATCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
7780 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-----A-CTC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
7823 TAAGTCTAATATCACTGGCCTTGAATCAGCATATTGGCACCCTCATCTTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TT
* * *
7873 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
7916 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTT
* * *
7968 TAAGTCCAATATCACTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTT
* * *
8020 TAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-CT-TCATCTT
*
8072 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
8121 TAA
1 TAA
8124 CATTCCTAAG
Statistics
Matches: 603, Mismatches: 63, Indels: 90
0.80 0.08 0.12
Matches are distributed among these distances:
43 222 0.37
44 4 0.01
45 3 0.00
46 1 0.00
47 4 0.01
48 41 0.07
49 155 0.26
50 37 0.06
51 1 0.00
52 134 0.22
53 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:7477 original size:22 final size:21
Alignment explanation
Indices: 7410--7477 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 21
7400 GCACCTTCAT
7410 CTTTAAGTCCAATGTAGCTGGC
1 CTTTAAGTCCAAT-TAGCTGGC
* *
7432 CTTGAA-TCAGCACATTAGC--AC
1 CTTTAAGTC--CA-ATTAGCTGGC
7453 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAAT-TAGCTGGC
7475 CTT
1 CTT
7478 GAATCAGCAT
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 8 0.23
22 11 0.31
23 6 0.17
24 2 0.06
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (21 bp):
CTTTAAGTCCAATTAGCTGGC
Found at i:7641 original size:92 final size:92
Alignment explanation
Indices: 7364--8114 Score: 1067
Period size: 92 Copynumber: 8.0 Consensus size: 92
7354 GCAACCTTTC
* *
7364 TAAGCCCAATATCGCTGGCCTTGGATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
7429 GGCCTTGAATCAGCACATTAGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
*
7456 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAT-TTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
7520 GGCCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* *
7547 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTAAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
7612 GGCCTTGAATCAG-AGCATTGGCACCTT
66 GGCCTTGAATCAGCA-CATTGGCACCTT
* *
7639 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCATTGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
7704 GGCCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* * *
7731 TAAGTCTAATATCGCTGGCCTTTAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* *
7796 GGCCTTGAATCAGCACATTGGCAACTC
66 GGCCTTGAATCAGCACATTGGCACCTT
* * * * *
7823 TAAGTCTAATATCACTGGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAATGTCGC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TTTAAGTCCAATGTAGC
7888 TGGCCTTGAATCAGCACATTGGCACCTT
65 TGGCCTTGAATCAGCACATTGGCACCTT
* *
7916 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATATC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGTCCAATGT-
* * *
7981 A-CTAGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTT
62 AGCTGGCCTTGAATCAGCACATT---G-----G-CACCTT
* * * * *
8020 TAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTTTAAGTCCAATATC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-AC-CT-TCATCTTTAAGTCCAATGTA
8085 GCTGGCCTTGAATCAGCACATTGGCACCTT
63 GCTGGCCTTGAATCAGCACATTGGCACCTT
8115 CATCTTTAAC
Statistics
Matches: 597, Mismatches: 42, Indels: 37
0.88 0.06 0.05
Matches are distributed among these distances:
91 89 0.15
92 300 0.50
93 80 0.13
95 36 0.06
96 6 0.01
98 1 0.00
101 1 0.00
103 1 0.00
104 82 0.14
105 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTT
Found at i:7991 original size:52 final size:52
Alignment explanation
Indices: 7913--8114 Score: 350
Period size: 52 Copynumber: 3.9 Consensus size: 52
7903 ACATTGGCAC
7913 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
7965 CTTTAAGTCCAATATCACTAGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
8017 CTTTAAGTCCAATATCCCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
8069 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
8115 CATCTTTAAC
Statistics
Matches: 141, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 141 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:13159 original size:52 final size:52
Alignment explanation
Indices: 13081--13209 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
13071 TGAAATATGA
*
13081 AAATTTGACTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
*
13133 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
13185 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
13210 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
Found at i:13220 original size:52 final size:51
Alignment explanation
Indices: 13081--13229 Score: 228
Period size: 52 Copynumber: 2.9 Consensus size: 51
13071 TGAAATATGA
*
13081 AAATTTGACTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
*
13133 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
*
13185 AAATTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
13230 ATGTATCGAT
Statistics
Matches: 91, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
51 2 0.02
52 89 0.98
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGC
Found at i:13236 original size:13 final size:13
Alignment explanation
Indices: 13218--13242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13208 CAAAGATCAG
13218 TGTATCGATACAA
1 TGTATCGATACAA
13231 TGTATCGATACA
1 TGTATCGATACA
13243 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:13309 original size:19 final size:18
Alignment explanation
Indices: 13285--13382 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
13275 TGGCTTATAT
13285 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
13304 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
13317 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
13336 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
13349 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
13369 TGTATCGATACAAA
1 TGTATCGATACAAA
13383 TCATTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:13322 original size:13 final size:13
Alignment explanation
Indices: 13304--13360 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
13294 ACAAAACTTA
13304 TGTATCGATACAT
1 TGTATCGATACAT
13317 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
13335 ATGTATCGATACAT
1 -TGTATCGATACAT
13349 TGTATCGATACA
1 TGTATCGATACA
13361 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:13324 original size:32 final size:32
Alignment explanation
Indices: 13283--13380 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
13273 AGTGGCTTAT
*
13283 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
13315 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
13347 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAC-TTATGTATCGATAC
13380 A
1 A
13381 AATCATTGAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:14536 original size:49 final size:49
Alignment explanation
Indices: 14310--15195 Score: 938
Period size: 49 Copynumber: 18.7 Consensus size: 49
14300 AAAGGGATGT
* * *
14310 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGGTGC
14362 CAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
14405 CAATATGCTAATTCAAGGCCAGCTACATTAGACTTAAAGATGACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG---AAGGTGC
* *
14457 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
14506 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG---AAGGTGC
*
14558 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * * ** *
14607 CAATGTGTTGATTCAAGGCCAGCGACATTGGA--T---GACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
14651 CAATATGCTGATTTAAGGCTAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
14694 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
14743 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
14792 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGTTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
14835 CAA-AGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGATGGTGC
1 CAATA-TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
14884 TAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
14927 CAATGTGCTGATTCATGGCCAACTATATTGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
14976 TAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * * *
15019 CAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
*
15068 CAATATACTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* * *
15111 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
* *
15160 CAATATGCTGATTCAAGGCCAGCGATATTGGGCTTA
1 CAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
15196 GAAGGGTTAC
Statistics
Matches: 712, Mismatches: 76, Indels: 95
0.81 0.09 0.11
Matches are distributed among these distances:
42 1 0.00
43 223 0.31
44 36 0.05
45 3 0.00
46 3 0.00
47 6 0.01
48 2 0.00
49 315 0.44
50 1 0.00
52 122 0.17
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGC
Found at i:14955 original size:184 final size:185
Alignment explanation
Indices: 14353--15200 Score: 913
Period size: 184 Copynumber: 4.5 Consensus size: 185
14343 TTAAAGATGG
14353 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-----A-AAGGTGCCAATATG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATG
* * * * *
14412 CTAATTCAAGGCCAGCTACATTAGACTTAAAGATGACAAAGGCGCCAATA-TGCTGATTCAAGGC
66 CTGATTCAAGGCCAGCGATATTGGAC-T-----TG---AAGGTGCCAA-AGTGCTGATTCAAGGC
* * *
14476 CAACGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
121 CAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGAC-T
14541 AAAGAT
185 -----T
* * *
14547 GACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 -A-AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATA
* * * * *
14612 TGTTGATTCAAGGCCAGCGACATTGGA--TGACAAAGGCGCCAATA-TGCTGATTTAAGGCTAGC
64 TGCTGATTCAAGGCCAGCGATATTGGACTTG---AAGGTGCCAA-AGTGCTGATTCAAGGCCAGC
* * *
14674 GATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
125 GACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
** *
14729 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATGGTGCCA
1 ----AA-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCA
* * *
14794 ATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGTTGCCAAAGTGCTGATTCAAGGCCAGCT
61 ATATGCTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAAAGTGCTGATTCAAGGCCAGCG
* * * *
14859 ACATTGGACTTAAAGGTGATGGTGCTAATATGCTGATTCAAGGCCAGCGATATTGGACTT
126 ACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* * * *
14919 -AAAGGTGCCAATGTGCTGATTCATGGCCAACTATATTGGACTTAAAGAAGAAGGTGCTAATATG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATG
* * * * *
14983 CTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATT
66 CTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAAAGTGCTGATTCAAGGCCAGCGACATT
* * * *
15048 GGACTTAAAGAAGAAGGTGCCAATATACTGATTCAAGGCCAGCTATATTGGACTT
131 GGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
* *
15103 -AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATG
1 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATG
*
15167 CTGATTCAAGGCCAGCGATATTGGGCTTAGAAGG
66 CTGATTCAAGGCCAGCGATATTGGACTT-GAAGG
15201 GTTACCACCG
Statistics
Matches: 576, Mismatches: 56, Indels: 52
0.84 0.08 0.08
Matches are distributed among these distances:
182 1 0.00
183 1 0.00
184 284 0.49
185 89 0.15
187 3 0.01
188 39 0.07
190 38 0.07
194 44 0.08
195 1 0.00
196 42 0.07
202 34 0.06
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (185 bp):
AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATG
CTGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAAAGTGCTGATTCAAGGCCAGCGACATT
GGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
Found at i:15188 original size:92 final size:92
Alignment explanation
Indices: 14550--15200 Score: 830
Period size: 92 Copynumber: 7.1 Consensus size: 92
14540 TAAAGATGAC
* * * * *
14550 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
* *
14615 TGATTCAAGGCCAGCGACATTGGA-TGAC
66 TGATTCAAGGCCAGCGATATTGGACT--T
* * * * * *
14643 AAAGGCGCCAATATGCTGATTTAAGGCTAGCGATATTGGACTT-----A-AAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
* *
14702 TGATTCAAGGCCAGCTACATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* ** *
14729 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATGGTGCCA
1 -----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCA
14794 ATATGCTGATTCAAGGCCAGCGATATTGGACTT
60 ATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * * ** * *
14827 GGAGTTGCCAAAGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGATGGTGCTAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
14892 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
14919 AAAGGTGCCAATGTGCTGATTCATGGCCAACTATATTGGACTTAAAGAAGAAGGTGCTAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
14984 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * *
15011 AAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATAC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
15076 TGATTCAAGGCCAGCTATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
15103 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
*
15168 TGATTCAAGGCCAGCGATATTGGGCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
15195 AGAAGG
1 A-AAGG
15201 GTTACCACCG
Statistics
Matches: 500, Mismatches: 44, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
87 37 0.07
88 1 0.00
91 1 0.00
92 379 0.76
93 44 0.09
98 38 0.08
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAAGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:15248 original size:33 final size:33
Alignment explanation
Indices: 15195--15362 Score: 256
Period size: 32 Copynumber: 5.2 Consensus size: 33
15185 TATTGGGCTT
*
15195 AGAAGGGTTACCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
15228 AGAATGGTTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
15261 AG-AGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
15292 AG-GGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
15324 A-AAGGGTTGCCACCAACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
15355 AGAAGGGT
1 AGAAGGGT
15363 GAAAGATGCC
Statistics
Matches: 124, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
31 32 0.26
32 60 0.48
33 32 0.26
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.28
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:15311 original size:63 final size:63
Alignment explanation
Indices: 15188--15362 Score: 264
Period size: 63 Copynumber: 2.8 Consensus size: 63
15178 CCAGCGATAT
* *
15188 TGGGC-TTAGAAGGGTTACCACCGACTTGTGTGGGCTTTAGAGAATGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCAACTTGTG
* *
15251 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTGAG-GGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGA-AGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCAACTTGTG
*
15314 TGGGCTTTAGAAAGGGTTGCCACCAACTTGTGTGGGCTTTGAGAAGGGT
1 TGGGCTTTAG-AAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGT
15363 GAAAGATGCC
Statistics
Matches: 102, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
63 62 0.61
64 13 0.13
65 27 0.26
ACGTcount: A:0.18, C:0.18, G:0.36, T:0.29
Consensus pattern (63 bp):
TGGGCTTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCAACTTGTG
Found at i:15406 original size:33 final size:33
Alignment explanation
Indices: 15364--15791 Score: 260
Period size: 33 Copynumber: 12.9 Consensus size: 33
15354 GAGAAGGGTG
* *
15364 AAAGATGCCACGAAGTTGTGGACTTAAAAGGAT
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
*
15397 CAAGGTGCCACGAAGTTGTGGACTTTAAAAGGGAAA
1 AAAGGTGCCACGAAGTTGTGGAC-TTAAAA-GG-AA
* * * **
15433 AAAAGTGCCACGGAGTTGTGGGCTTTGAA--AA
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
* * * * *
15464 GAAGGTGCCACGGAGTCGTGGATTTAATAGGAA
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
* ** *
15497 CAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGGA
1 AAAGGTGCCACGAAGTTGTGGAC-TTAAAA-GGAA
* * * **
15532 AAAGAGTGCCATGGAGTTGTGGGCTTTGAA--AA
1 AAAG-GTGCCACGAAGTTGTGGACTTAAAAGGAA
* * *
15564 GAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
* * *
15597 CAAGGTGCCAC-AGGGTTGTGGACTTTAAAAGGGGA
1 AAAGGTGCCACGA-AGTTGTGGAC-TTAAAA-GGAA
*
15632 AAAGAGTGCCAC-AGAGTTGTGGGCTTAAAA-G--
1 AAAG-GTGCCACGA-AGTTGTGGACTTAAAAGGAA
*
15663 ---GGTGCCACGGAGTTGTGGACTTAAAAGG-A
1 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
* * * *
15692 ACAGGATGCCAC-AGGGTTGTAGGCCTTAAAAAGAA
1 AAAGG-TGCCACGA-AGTTGT-GGACTTAAAAGGAA
15727 AAAGGTGCCAC-AGAGTTGTGGACTTAGAAA-GAA
1 AAAGGTGCCACGA-AGTTGTGGACTTA-AAAGGAA
*
15760 AAAGAGTGCCAC-AGAGTTGTGGGCTTAAAAGG
1 AAAG-GTGCCACGA-AGTTGTGGACTTAAAAGG
15792 GTGCCACGGA
Statistics
Matches: 314, Mismatches: 54, Indels: 53
0.75 0.13 0.13
Matches are distributed among these distances:
27 22 0.07
28 2 0.01
31 43 0.14
32 6 0.02
33 90 0.29
34 65 0.21
35 33 0.11
36 53 0.17
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAA
Found at i:15485 original size:100 final size:100
Alignment explanation
Indices: 15369--15791 Score: 531
Period size: 100 Copynumber: 4.3 Consensus size: 100
15359 GGGTGAAAGA
* * * *
15369 TGCCACGAAGTTGTGGACTTAAAAGGATCAAGGTGCCAC-GAAGTTGTGGACTTTAAAAGGGAAA
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACAG-GGTTGTGGACTTTAAAAGGGGAA
*
15433 AAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGAAGG
65 AAAAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGG
* * * *
15469 TGCCACGGAGTCGTGGATTTAATAGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAAGGGGAAA
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGGGTTGTGGACTTTAAAAGGGGAAA
* **
15534 AGAGTGCCATGGAGTTGTGGGCTTTGAAAAGAAGG
66 AAAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGG
*
15569 TGCCACGGAGTCGTGGACTTAAAAGGAACAAGGTGCCACAGGGTTGTGGACTTTAAAAGGGGAAA
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGGGTTGTGGACTTTAAAAGGGGAAA
*
15634 AGAGTGCCACAGAGTTGTGGGC-TT-AAAAG--GG
66 AAAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGG
* *
15665 TGCCACGGAGTTGTGGACTTAAAAGGAAC-AGGATGCCACAGGGTTGTAGG-CCTTAAAA--AGA
1 TGCCACGGAGTTGTGGACTTAAAAGGAACAAGG-TGCCACAGGGTTGT-GGACTTTAAAAGGGGA
* * * *
15726 AAAAGGTGCCACAGAGTTGTGGACTTAGAAAGAAAAAGAG
64 AAAAAGTGCCACAGAGTTGTGGGCTTTG-AA-AAGAAG-G
* *
15766 TGCCACAGAGTTGTGGGCTTAAAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGG
15792 GTGCCACGGA
Statistics
Matches: 289, Mismatches: 24, Indels: 19
0.87 0.07 0.06
Matches are distributed among these distances:
94 23 0.08
95 4 0.01
96 51 0.18
97 4 0.01
98 7 0.02
99 2 0.01
100 172 0.60
101 26 0.09
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.20
Consensus pattern (100 bp):
TGCCACGGAGTTGTGGACTTAAAAGGAACAAGGTGCCACAGGGTTGTGGACTTTAAAAGGGGAAA
AAAGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGG
Found at i:15669 original size:27 final size:28
Alignment explanation
Indices: 15631--15812 Score: 127
Period size: 27 Copynumber: 6.0 Consensus size: 28
15621 TTAAAAGGGG
*
15631 AAAAGA-GTGCCACAGAGTTGTGGGCTT
1 AAAAGAGGTGCCACAGAGTTGTGGACTT
*
15658 AAAAG-GGTGCCACGGAGTTGTGGACTT
1 AAAAGAGGTGCCACAGAGTTGTGGACTT
* *
15685 AAAAGGAACAGGATGCCACAGGGTTGTAGGCCTT
1 AAAA-G---AGG-TGCCACAGAGTTGT-GGACTT
15719 AAAAAGAAAAAGGTGCCACAGAGTTGTGGACTT
1 -AAAAG----AGGTGCCACAGAGTTGTGGACTT
*
15752 AGAAAGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 A-AAAG----AG-GTGCCACAGAGTTGTGGACTT
* *
15786 AAAAG-GGTGCCACGGAGTTGTAGACTT
1 AAAAGAGGTGCCACAGAGTTGTGGACTT
15813 TGCAGAAATG
Statistics
Matches: 131, Mismatches: 12, Indels: 24
0.78 0.07 0.14
Matches are distributed among these distances:
27 46 0.35
28 2 0.02
32 3 0.02
33 31 0.24
34 40 0.31
35 9 0.07
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.20
Consensus pattern (28 bp):
AAAAGAGGTGCCACAGAGTTGTGGACTT
Found at i:15736 original size:34 final size:33
Alignment explanation
Indices: 15658--15789 Score: 158
Period size: 34 Copynumber: 3.9 Consensus size: 33
15648 TTGTGGGCTT
* *
15658 AAAAGGGTGCCACGGAGTTGTGGACTT-AAAAG
1 AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
* * * *
15690 GAACAGGATGCCACAGGGTTGTAGGCCTTAAAAAG
1 AAAAAGG-TGCCACAGAGTTGT-GGACTTAAAAAG
*
15725 AAAAAGGTGCCACAGAGTTGTGGACTTAGAAAG
1 AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
*
15758 AAAAAGAGTGCCACAGAGTTGTGGGCTTAAAA
1 AAAAAG-GTGCCACAGAGTTGTGGACTTAAAA
15790 GGGTGCCACG
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
32 4 0.05
33 28 0.34
34 41 0.49
35 10 0.12
ACGTcount: A:0.37, C:0.14, G:0.31, T:0.18
Consensus pattern (33 bp):
AAAAAGGTGCCACAGAGTTGTGGACTTAAAAAG
Found at i:15743 original size:67 final size:67
Alignment explanation
Indices: 15658--15789 Score: 178
Period size: 67 Copynumber: 2.0 Consensus size: 67
15648 TTGTGGGCTT
* * * * *
15658 AAAAGGGTGCCACGGAGTTGTGGACTTA-AAAGGAACAG-GATGCCACAGGGTTGTAGGCCTTAA
1 AAAAAGGTGCCACAGAGTTGTGGACTTAGAAAGAAAAAGAG-TGCCACAGAGTTGT-GGCCTTAA
15721 AAAG
64 AAAG
*
15725 AAAAAGGTGCCACAGAGTTGTGGACTTAGAAAGAAAAAGAGTGCCACAGAGTTGTGGGCTTAAAA
1 AAAAAGGTGCCACAGAGTTGTGGACTTAGAAAGAAAAAGAGTGCCACAGAGTTGTGGCCTTAAAA
15790 GGGTGCCACG
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
67 35 0.61
68 21 0.37
69 1 0.02
ACGTcount: A:0.37, C:0.14, G:0.31, T:0.18
Consensus pattern (67 bp):
AAAAAGGTGCCACAGAGTTGTGGACTTAGAAAGAAAAAGAGTGCCACAGAGTTGTGGCCTTAAAA
AG
Found at i:15844 original size:32 final size:30
Alignment explanation
Indices: 15793--15975 Score: 181
Period size: 32 Copynumber: 5.9 Consensus size: 30
15783 CTTAAAAGGG
* * * *
15793 TGCCACGGAGTTGTAGACTTTGCAGAAATGGA
1 TGCCACTGAGTCGTGGACTTTG-AGAAA-AGA
* *
15825 TGCCACTAAGTCGTGGACTTTAAGACAAAAGA
1 TGCCACTGAGTCGTGGACTTT--GAGAAAAGA
15857 TGCCACTGAGTCGTGGACTTTGAAGAAAAAGA
1 TGCCACTGAGTCGTGGACTTTG-AG-AAAAGA
15889 TTG-CACTGAGTCGTGGACTTTGAGACAAA-A
1 -TGCCACTGAGTCGTGGACTTTGAGA-AAAGA
* * *
15919 TGCCACTGAGTCGTGGGCGTTGAGAAGAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAAGA
*
15949 TTGCCACTGAGTCGTGGACTTTAAGAA
1 -TGCCACTGAGTCGTGGACTTTGAGAA
15976 GGTATTTGAC
Statistics
Matches: 128, Mismatches: 14, Indels: 19
0.80 0.09 0.12
Matches are distributed among these distances:
29 4 0.03
30 24 0.19
31 29 0.23
32 64 0.50
33 6 0.05
34 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (30 bp):
TGCCACTGAGTCGTGGACTTTGAGAAAAGA
Found at i:15876 original size:64 final size:61
Alignment explanation
Indices: 15793--15974 Score: 208
Period size: 64 Copynumber: 2.9 Consensus size: 61
15783 CTTAAAAGGG
* * * *
15793 TGCCACGGAGTTGTAGACTTTGCAGAAATGGA-TGCCACTAAGTCGTGGACTTTAAGACAAAAGA
1 TGCCACTGAGTCGTGGACTTTG-AGAAA-GGATTGCCACTGAGTCGTGGACTTTAAGAC-AAA-A
* *
15857 TGCCACTGAGTCGTGGACTTTGAAGAAAAAGATTG-CACTGAGTCGTGGACTTTGAGACAAAA
1 TGCCACTGAGTCGTGGACTTTG-AG-AAAGGATTGCCACTGAGTCGTGGACTTTAAGACAAAA
* *
15919 TGCCACTGAGTCGTGGGCGTTGAG-AAGAGATTGCCACTGAGTCGTGGACTTTAAGA
1 TGCCACTGAGTCGTGGACTTTGAGAAAG-GATTGCCACTGAGTCGTGGACTTTAAGA
15975 AGGTATTTGA
Statistics
Matches: 103, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
59 2 0.02
60 5 0.05
61 23 0.22
62 21 0.20
63 3 0.03
64 44 0.43
65 5 0.05
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (61 bp):
TGCCACTGAGTCGTGGACTTTGAGAAAGGATTGCCACTGAGTCGTGGACTTTAAGACAAAA
Found at i:15884 original size:128 final size:127
Alignment explanation
Indices: 15569--15888 Score: 350
Period size: 128 Copynumber: 2.5 Consensus size: 127
15559 GAAAAGAAGG
* * * * * *
15569 TGCCACGGAGTCGT-GGACTTAAAAGGAACAAGGTGCCACAGGGTTGTGGACTTTA-AAAGGGGA
1 TGCCACAGAGTCGTAGGACTTAAAA-GAAAAAGATGCCACAGAGTCGTGGAC-TTAGAAA--GAA
*
15632 AAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACAGG
62 AAAGAGTGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTAGACTTAAAAGGAACAGG
15697 A
127 A
* * * * *
15698 TGCCACAGGGTTGTAGGCCTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGACTTAGAAAGAAAAA
1 TGCCACAGAGTCGTAGGACTT-AAAAGAAAAAGATGCCACAGAGTCGTGGACTTAGAAAGAAAAA
***
15763 GAGTGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTAGACTTTGCA-GAA-ATGGA
65 GAGTGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTAGACTTAAAAGGAACA-GGA
* * *
15825 TGCCACTA-AGTCGT-GGACTT-TAAGACAAAAGATGCCACTGAGTCGTGGACTTTG-AAGAAAA
1 TGCCAC-AGAGTCGTAGGACTTAAAAGA-AAAAGATGCCACAGAGTCGTGGACTTAGAAAGAAAA
15886 AGA
64 AGA
15889 TTGCACTGAG
Statistics
Matches: 166, Mismatches: 19, Indels: 17
0.82 0.09 0.08
Matches are distributed among these distances:
124 14 0.08
125 24 0.14
126 6 0.04
127 16 0.10
128 56 0.34
129 14 0.08
130 32 0.19
131 4 0.02
ACGTcount: A:0.33, C:0.15, G:0.32, T:0.20
Consensus pattern (127 bp):
TGCCACAGAGTCGTAGGACTTAAAAGAAAAAGATGCCACAGAGTCGTGGACTTAGAAAGAAAAAG
AGTGCCACAGAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTAGACTTAAAAGGAACAGGA
Found at i:16953 original size:30 final size:29
Alignment explanation
Indices: 16913--16979 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
16903 GGGTTTTTCC
*
16913 TTTCTTTTTTTTTTT--T-GTTTG-TTTG
1 TTTCTTTTTTTTTTTCCTATTTTGTTTTG
16938 TTTCTTCTTTTTTTTTCCTATTTTGTTTTG
1 TTTCTT-TTTTTTTTTCCTATTTTGTTTTG
16968 TTTCTTTTTTTT
1 TTTCTTTTTTTT
16980 GGAAAAGAAC
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
25 6 0.17
26 9 0.25
28 1 0.03
29 10 0.28
30 10 0.28
ACGTcount: A:0.01, C:0.09, G:0.07, T:0.82
Consensus pattern (29 bp):
TTTCTTTTTTTTTTTCCTATTTTGTTTTG
Found at i:20983 original size:13 final size:13
Alignment explanation
Indices: 20965--20989 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20955 TTCAACGATT
20965 TGTATCGATACAA
1 TGTATCGATACAA
20978 TGTATCGATACA
1 TGTATCGATACA
20990 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:21139 original size:52 final size:52
Alignment explanation
Indices: 21083--21201 Score: 220
Period size: 52 Copynumber: 2.3 Consensus size: 52
21073 ACACTGATCT
*
21083 ATGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAA
1 ATGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAA
*
21135 ATGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAA
1 ATGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAA
21187 ATGTATCGATACATG
1 ATGTATCGATACATG
21202 TAGACAAACT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
ATGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAA
Done.