Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold153
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3137677
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 24
Found at i:733148 original size:23 final size:21
Alignment explanation
Indices: 733120--733167 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
733110 GACCCTTCTA
*
733120 TTTTTTGCTATTTTTTCTTTTTT
1 TTTTTTG-T-TTTTTTCTGTTTT
*
733143 TTTTTTGTTTTTTTGTGTTTT
1 TTTTTTGTTTTTTTCTGTTTT
733164 TTTT
1 TTTT
733168 GGTGTAAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 15 0.65
22 1 0.04
23 7 0.30
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.85
Consensus pattern (21 bp):
TTTTTTGTTTTTTTCTGTTTT
Found at i:747154 original size:20 final size:19
Alignment explanation
Indices: 747125--747199 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
747115 AAAAAAACAT
747125 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
747144 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
747165 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
747185 AATGTATCGATACAT
1 AATGTATCGATACAT
747200 CTGGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:747182 original size:40 final size:39
Alignment explanation
Indices: 747122--747199 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
747112 GGTAAAAAAA
*
747122 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
747161 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
747200 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:747827 original size:23 final size:22
Alignment explanation
Indices: 747766--747832 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 22
747756 GGAGCAAATC
* * *
747766 TTTTAACCATTTATTAGGATATA
1 TTTTAA-CGTTTATTTGAATATA
*
747789 TCTTAACTGTTTATTTGAATATA
1 TTTTAAC-GTTTATTTGAATATA
*
747812 TTTTAATCGTTTATTTCAATA
1 TTTTAA-CGTTTATTTGAATA
747833 CTTGGCAGAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
22 1 0.03
23 34 0.94
24 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.07, T:0.52
Consensus pattern (22 bp):
TTTTAACGTTTATTTGAATATA
Found at i:748739 original size:24 final size:24
Alignment explanation
Indices: 748707--748752 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
748697 GTTAATATGC
748707 AAATGAACTTTTAATAATATTTTA
1 AAATGAACTTTTAATAATATTTTA
*
748731 AAATTAACTTTTAATAATATTT
1 AAATGAACTTTTAATAATATTT
748753 CTTTATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (24 bp):
AAATGAACTTTTAATAATATTTTA
Found at i:748853 original size:14 final size:15
Alignment explanation
Indices: 748834--748866 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
748824 CTAAAAATAT
748834 AACTCAAATCTC-AA
1 AACTCAAATCTCTAA
748848 AACTCAAATCTCTAA
1 AACTCAAATCTCTAA
748863 AACT
1 AACT
748867 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (15 bp):
AACTCAAATCTCTAA
Found at i:748916 original size:21 final size:21
Alignment explanation
Indices: 748890--748934 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
748880 TAATAATAAT
748890 AACATAACTAAACTAAAATTG
1 AACATAACTAAACTAAAATTG
**
748911 AACATAACTAGCCTAAAATTG
1 AACATAACTAAACTAAAATTG
748932 AAC
1 AAC
748935 TGGTAAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.53, C:0.18, G:0.07, T:0.22
Consensus pattern (21 bp):
AACATAACTAAACTAAAATTG
Found at i:751694 original size:11 final size:11
Alignment explanation
Indices: 751674--751715 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
751664 TACGATGATC
*
751674 AATAACAATAT
1 AATAAAAATAT
751685 AATAAAAATAT
1 AATAAAAATAT
751696 AATAAAAA-AT
1 AATAAAAATAT
*
751706 AATAATAATA
1 AATAAAAATA
751716 ATGATAGCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (11 bp):
AATAAAAATAT
Found at i:751837 original size:19 final size:17
Alignment explanation
Indices: 751806--751851 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 17
751796 ATATCATTTA
*
751806 AAATTATTATTTTTTAATT
1 AAATTA-TATTTTATAA-T
751825 ATAATTATATTTTATAAT
1 A-AATTATATTTTATAAT
751843 AAATTATAT
1 AAATTATAT
751852 AAAATAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 8 0.32
18 2 0.08
19 10 0.40
20 5 0.20
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AAATTATATTTTATAAT
Found at i:752856 original size:23 final size:23
Alignment explanation
Indices: 752822--752888 Score: 127
Period size: 23 Copynumber: 3.0 Consensus size: 23
752812 AGTTTATTCA
752822 TTAA-ATTAAATAAATATATTTT
1 TTAACATTAAATAAATATATTTT
752844 TTAACATTAAATAAATATATTTT
1 TTAACATTAAATAAATATATTTT
752867 TTAACATTAAATAAATATATTT
1 TTAACATTAAATAAATATATTT
752889 ATGAATAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
22 4 0.09
23 40 0.91
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (23 bp):
TTAACATTAAATAAATATATTTT
Found at i:752960 original size:20 final size:20
Alignment explanation
Indices: 752945--752982 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
752935 TTATTTATAA
752945 AAATAAAAATAAATTTAAAC
1 AAATAAAAATAAATTTAAAC
* *
752965 AAATAAATATATATTTAA
1 AAATAAAAATAAATTTAA
752983 TTAACTTAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (20 bp):
AAATAAAAATAAATTTAAAC
Found at i:754164 original size:16 final size:17
Alignment explanation
Indices: 754117--754167 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
754107 CCCTTATCAT
*
754117 AATTAATATAAATATTAA
1 AATTTATATAAATA-TAA
754135 AATTTATATAAATATAA
1 AATTTATATAAATATAA
754152 AATATT-T-TAAATATAA
1 AAT-TTATATAAATATAA
754168 TTATAATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
16 9 0.29
17 7 0.23
18 15 0.48
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
AATTTATATAAATATAA
Found at i:761857 original size:11 final size:11
Alignment explanation
Indices: 761840--761914 Score: 78
Period size: 11 Copynumber: 6.3 Consensus size: 11
761830 TCTTTGATAA
761840 AAAATAAAAAAT
1 AAAA-AAAAAAT
*
761852 AAATAAAAAAT
1 AAAAAAAAAAT
761863 CAAAAAAATAATAT
1 -AAAAAAA-AA-AT
*
761877 AGAAATTAAAAAT
1 A-AAA-AAAAAAT
761890 AAAAAAAAAAT
1 AAAAAAAAAAT
761901 AAAAAAAAAAT
1 AAAAAAAAAAT
761912 AAA
1 AAA
761915 GGAAACCAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
11 27 0.50
12 12 0.22
13 6 0.11
14 7 0.13
15 2 0.04
ACGTcount: A:0.81, C:0.01, G:0.01, T:0.16
Consensus pattern (11 bp):
AAAAAAAAAAT
Found at i:761867 original size:8 final size:7
Alignment explanation
Indices: 761836--761914 Score: 54
Period size: 7 Copynumber: 10.7 Consensus size: 7
761826 ATTATCTTTG
761836 ATAAAAA
1 ATAAAAA
761843 ATAAAAA
1 ATAAAAA
761850 ATAAATAA
1 ATAAA-AA
761858 A-AAATCAA
1 ATAAA--AA
761866 A-AAAATA
1 ATAAAA-A
*
761873 ATATAGAA
1 ATA-AAAA
*
761881 ATTAAAA
1 ATAAAAA
761888 ATAAAAA
1 ATAAAAA
*
761895 AAAAATAA
1 ATAAA-AA
*
761903 AAAAAAA
1 ATAAAAA
761910 ATAAA
1 ATAAA
761915 GGAAACCAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
6 1 0.02
7 36 0.61
8 20 0.34
9 2 0.03
ACGTcount: A:0.81, C:0.01, G:0.01, T:0.16
Consensus pattern (7 bp):
ATAAAAA
Found at i:761898 original size:38 final size:37
Alignment explanation
Indices: 761841--761912 Score: 108
Period size: 38 Copynumber: 1.9 Consensus size: 37
761831 CTTTGATAAA
* *
761841 AAATAAAAAATAAATAAAAAATCAAAAAAATAATATAG
1 AAATAAAAAATAAAAAAAAAAT-AAAAAAAAAATATAG
*
761879 AAATTAAAAATAAAAAAAAAATAAAAAAAAAATA
1 AAATAAAAAATAAAAAAAAAATAAAAAAAAAATA
761913 AAGGAAACCA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
37 11 0.35
38 20 0.65
ACGTcount: A:0.81, C:0.01, G:0.01, T:0.17
Consensus pattern (37 bp):
AAATAAAAAATAAAAAAAAAATAAAAAAAAAATATAG
Found at i:761926 original size:37 final size:38
Alignment explanation
Indices: 761836--761929 Score: 104
Period size: 37 Copynumber: 2.5 Consensus size: 38
761826 ATTATCTTTG
* * *
761836 ATAAA-AAATAAAAAATAAATAAAAAATCAAAAAAATA
1 ATAAAGAAATCAAAAATAAAAAAAAAATCAAAAAAAAA
* *
761873 ATATAGAAATTAAAAATAAAAAAAAAAT-AAAAAAAAA
1 ATAAAGAAATCAAAAATAAAAAAAAAATCAAAAAAAAA
*
761910 ATAAAGGAAA-CCAAAATAAA
1 ATAAA-GAAATCAAAAATAAA
761930 TCCAAAACCA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 24 0.50
38 24 0.50
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (38 bp):
ATAAAGAAATCAAAAATAAAAAAAAAATCAAAAAAAAA
Found at i:763961 original size:157 final size:157
Alignment explanation
Indices: 763667--764053 Score: 492
Period size: 157 Copynumber: 2.5 Consensus size: 157
763657 AATACCAAAA
* * *
763667 TTTCTATAATCGGGGATACTCCGACCCCATTATTTCTGAGGGGATACTCCAACCCTAGTTTTTTT
1 TTTCTATAATCGGGGATACTCCAACCCCATTATTTCTAAGGGGATACTCTAACCCTAG--TTTTT
* * *
763732 TTTCAAAACACCGATTTTTCACAATCGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCC
64 TTCCAAAACACCGACTTTTCACAATCGAGGATACTCCAACCTCATTATTTTCGAGAGGATACTCC
* *
763797 AATCCCGACCTTATTTCTAAAACATTGAT
129 AACCCCGACCTTATTTCTAAAACATCGAT
* *
763826 TTTCTATAATCGAGGATACTCCAACCTCATTATTTCTAAGGGGATACTCTAACCCTAGTTTTTTT
1 TTTCTATAATCGGGGATACTCCAACCCCATTATTTCTAAGGGGATACTCTAACCCTAGTTTTTTT
* * * * *
763891 CCAAAACATCGACTTTTCATAATCGAGGATACTCTAATCC-CGTTATTTTCGAGGGGATACTCCA
66 CCAAAACACCGACTTTTCACAATCGAGGATACTCCAA-CCTCATTATTTTCGAGAGGATACTCCA
**
763955 ACCCCGATTTTATTTCTAAAACATCGAT
130 ACCCCGACCTTATTTCTAAAACATCGAT
* * * * * *
763983 TTT-TCACAATCGGGGATACTCCAACCCCGTTATTTTTAAGAGGATACTTTAA-CCTCGTTTTAT
1 TTTCT-ATAATCGGGGATACTCCAACCCCATTATTTCTAAGGGGATACTCTAACCCTAGTTTT-T
*
764046 CTCCAAAA
64 TTCCAAAA
764054 TATTAAATTT
Statistics
Matches: 199, Mismatches: 26, Indels: 8
0.85 0.11 0.03
Matches are distributed among these distances:
156 9 0.05
157 135 0.68
158 2 0.01
159 53 0.27
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (157 bp):
TTTCTATAATCGGGGATACTCCAACCCCATTATTTCTAAGGGGATACTCTAACCCTAGTTTTTTT
CCAAAACACCGACTTTTCACAATCGAGGATACTCCAACCTCATTATTTTCGAGAGGATACTCCAA
CCCCGACCTTATTTCTAAAACATCGAT
Found at i:764028 original size:79 final size:79
Alignment explanation
Indices: 763674--764030 Score: 380
Period size: 79 Copynumber: 4.5 Consensus size: 79
763664 AAATTTCTAT
* * * * *
763674 AATCGGGGATACTCCGACCCCATTATTTCTGAGGGGATACTCCAACCCTAGTTTTTTTTTTCAAA
1 AATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCCGAGTTTTATTTCT-AAA
*
763739 ACACCGATTTTTCAC
65 ACATCGATTTTTCAC
* * * **
763754 AATCGGGGATACTCCAACCTCATTATTTTCGAGAGGATACTCCAATCCCGA-CCTTATTTCTAAA
1 AATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAA-CCCGAGTTTTATTTCTAAA
* *
763818 ACATTGA-TTTTCTAT
65 ACATCGATTTTTC-AC
* * * * * * *
763833 AATCGAGGATACTCCAACCTCATTATTTCTAAGGGGATACTCTAACCCTAGTTTT-TTTCCAAAA
1 AATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCCGAGTTTTATTTCTAAAA
* *
763897 CATCGACTTTTCAT
66 CATCGATTTTTCAC
* * * * *
763911 AATCGAGGATACTCTAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGA-TTTTATTTCTAAA
1 AATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAA-CCCGAGTTTTATTTCTAAA
763975 ACATCGATTTTTCAC
65 ACATCGATTTTTCAC
* * *
763990 AATCGGGGATACTCCAACCCCGTTATTTTTAAGAGGATACT
1 AATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACT
764031 TTAACCTCGT
Statistics
Matches: 229, Mismatches: 42, Indels: 13
0.81 0.15 0.05
Matches are distributed among these distances:
78 65 0.28
79 114 0.50
80 46 0.20
81 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (79 bp):
AATCGGGGATACTCCAACCCCATTATTTTTGAGGGGATACTCCAACCCGAGTTTTATTTCTAAAA
CATCGATTTTTCAC
Found at i:768354 original size:79 final size:79
Alignment explanation
Indices: 768223--768421 Score: 218
Period size: 79 Copynumber: 2.5 Consensus size: 79
768213 AATAATGGGG
* * * * ** * * *
768223 TTGGAGTATCCCCTTGAAAATAACGGGGCTGGAGTATCCTCGGTTGTGAGAAATCGATGATTAGA
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATCATTAGA
*
768288 AAAAAAAATCGAGA
66 AAAAAAAACCGAGA
* * *
768302 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATCTTTTGG
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATCATTAGA
* * * * *
768367 GAATAAAGCCGGGG
66 AAAAAAAACCGAGA
**
768381 TTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCC
1 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCC
768422 GATGAAATAA
Statistics
Matches: 100, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
79 100 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATCATTAGA
AAAAAAAACCGAGA
Found at i:768432 original size:28 final size:28
Alignment explanation
Indices: 768376--768447 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
768366 GGAATAAAGC
** **
768376 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
768404 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
768432 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
768448 TCTCGATTGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:768515 original size:110 final size:107
Alignment explanation
Indices: 768302--768534 Score: 286
Period size: 110 Copynumber: 2.1 Consensus size: 107
768292 AAAATCGAGA
*** * * *
768302 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATCTTTTGG
1 TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATCTTTTGA
* * ** **
768367 GAATAAAGCCGGGGTTGGAGTATCCCCTCGGAGGTAACGGGG
66 AAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGGG
* * ** *
768409 TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCTCGATTGTGAAAAATTGATGTTTT
1 TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCC-C-CAATTATGAAAAATCAAT-CTTT
768474 TGAAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGGG
63 TGAAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGGG
768519 TTGGAGTATCCCCGAT
1 TTGGAGTATCCCCGAT
768535 TATGAGAAAT
Statistics
Matches: 106, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
107 35 0.33
108 1 0.01
109 13 0.12
110 57 0.54
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (107 bp):
TTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATCTTTTGA
AAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGGG
Found at i:768539 original size:189 final size:186
Alignment explanation
Indices: 768213--768607 Score: 531
Period size: 189 Copynumber: 2.1 Consensus size: 186
768203 TTTTGGAGAT
* * * * *
768213 AATAATGGGGTTGGAGTATCCCCTTGAAAATAACGGGGCTGGAGTATCCTCGGTTGTGAGAAATC
1 AATAACGGGGTTGGAGTATCCCCATGAAAATAACGAGGCTGGAGTATCCTCGATTGTGAAAAATC
* **
768278 GATGATTAGAAAAAAAAATCGAGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCC
66 GATGATTAGAAAAAAAAACCGAGATTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCC
* * * *
768343 AATTATGAGAAATCAATCTTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGA
131 AATTATGAGAAATCAATATTTTGGAAATAAAGCAGGGGTTGGAGTATCCCCTCGAA
** *
768399 GGTAACGGGGTTGGAGTATCCCCGATG-AAATAACGAGGTTGGAGTATCCTCTCGATTGTGAAAA
1 AATAACGGGGTTGGAGTATCCCC-ATGAAAATAACGAGGCTGGAGTAT-C-CTCGATTGTGAAAA
* * * * * *
768463 ATTGATGTTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTAT
63 ATCGATG-ATTAGAAAAAAAAACCGAGATTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTAT
* * *
768528 CCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCAGGGGTTGGAGTATCCCTTCGAA
127 CCCCAATTATGAGAAATCAATATTTTGGAAATAAAGCAGGGGTTGGAGTATCCCCTCGAA
768588 AATAACGGGGTTGGAGTATC
1 AATAACGGGGTTGGAGTATC
768608 TCCAATTATG
Statistics
Matches: 179, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
186 38 0.21
187 3 0.02
188 18 0.10
189 120 0.67
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (186 bp):
AATAACGGGGTTGGAGTATCCCCATGAAAATAACGAGGCTGGAGTATCCTCGATTGTGAAAAATC
GATGATTAGAAAAAAAAACCGAGATTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCC
AATTATGAGAAATCAATATTTTGGAAATAAAGCAGGGGTTGGAGTATCCCCTCGAA
Found at i:768590 original size:79 final size:79
Alignment explanation
Indices: 768405--768876 Score: 614
Period size: 79 Copynumber: 6.0 Consensus size: 79
768395 CGGAGGTAAC
* * * *
768405 GGGGTTGGAGTAT-CCC-CGATGAAATAACGAGGTTGGAGTATCCTCTCGATTGTGAAAAATTGA
1 GGGGTTGGAGTATCCCCTCGA--AAATAACGGGGTTGGAGTATCC-C-CGATTATGAGAAATTAA
* * *
768468 TGTTTTTGAAAATAAAACC
62 T-ATTTTGAAAATAAAGCA
*
768487 GGGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
*
768552 TTGGAAATAAAGCA
66 TTGAAAATAAAGCA
* * *
768566 GGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCTCCAATTATGAGAAATTAATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
* *
768631 TTGGAAATAAAGCC
66 TTGAAAATAAAGCA
* *
768645 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATTGATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
* *
768710 TTGGAAATAAAGCT
66 TTGAAAATAAAGCA
* *
768724 GGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
768789 TT-AAGAATAAAGCA
66 TTGAA-AATAAAGCA
* * * * *
768803 GGGGTTGGAG-AT-ACCTCGGAAATAACGGGGTTGGAGTATCCCCGATTA-CAGAAAATTAGTGT
1 GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAG-AAATTAATAT
768865 TTTGAAAATAAA
65 TTTGAAAATAAA
768877 ATCGGAGCTG
Statistics
Matches: 356, Mismatches: 29, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
76 2 0.01
77 51 0.14
78 5 0.01
79 243 0.68
80 15 0.04
81 1 0.00
82 34 0.10
83 3 0.01
84 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (79 bp):
GGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATT
TTGAAAATAAAGCA
Found at i:771288 original size:13 final size:13
Alignment explanation
Indices: 771270--771295 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
771260 ACAAAGATTG
771270 ATGTATCGATACA
1 ATGTATCGATACA
771283 ATGTATCGATACA
1 ATGTATCGATACA
771296 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:771386 original size:32 final size:32
Alignment explanation
Indices: 771340--771412 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 32
771330 AGCTTCGTAG
*
771340 CGATGCATTGTATCGATACAAAACTTATCTAT
1 CGATACATTGTATCGATACAAAACTTATCTAT
* * *
771372 CGATACATTGTATCGATACAACATTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATCTAT
*
771404 TGATACATT
1 CGATACATT
771413 TACTGAATGT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.37
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATCTAT
Found at i:771495 original size:21 final size:21
Alignment explanation
Indices: 771469--771524 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
771459 GTTGGGACCT
* *
771469 TGTATCAATACATTCTACAAA
1 TGTATCGATACATTATACAAA
771490 TGTATCGATACATTATACAAA
1 TGTATCGATACATTATACAAA
771511 TGTATCGATACATT
1 TGTATCGATACATT
771525 TGGATAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTATACAAA
Found at i:772386 original size:43 final size:43
Alignment explanation
Indices: 772214--772433 Score: 224
Period size: 42 Copynumber: 5.1 Consensus size: 43
772204 CCCATTTTTC
* * * *
772214 GAGGACAAAGGA-AAAAAGAAAACGAAA-TACGTCCTGCTCTCT
1 GAGGACAAAGGAGAAAAGGAAAA-TAAAGTGCGTCCTGCTCTTT
772256 GAGGACAAAAGG-G-AAAGGAAAATAAAGTGCGT-CTGCTCTTT
1 GAGGAC-AAAGGAGAAAAGGAAAATAAAGTGCGTCCTGCTCTTT
* * * *
772297 GAGGACTAGAAGG-GAAAAGAAGGAAATAAAGAGTGTCCTACTCTTT
1 GAGGAC-A-AAGGAGAAAAG--GAAAATAAAGTGCGTCCTGCTCTTT
772343 GAGGACAAAGGAGAAAAGGAAAATGAAA-TGCGTCCTGCTCTTT
1 GAGGACAAAGGAGAAAAGGAAAAT-AAAGTGCGTCCTGCTCTTT
*
772386 GAGGACAAA--AGAAAGAGGAAAATAAAGTGAGTCCTGCTCTTT
1 GAGGACAAAGGAGAAA-AGGAAAATAAAGTGCGTCCTGCTCTTT
772428 GAGGAC
1 GAGGAC
772434 TACAAAGTGA
Statistics
Matches: 152, Mismatches: 14, Indels: 24
0.80 0.07 0.13
Matches are distributed among these distances:
41 26 0.17
42 51 0.34
43 35 0.23
44 7 0.05
45 19 0.12
46 14 0.09
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGACAAAGGAGAAAAGGAAAATAAAGTGCGTCCTGCTCTTT
Found at i:772715 original size:94 final size:93
Alignment explanation
Indices: 772484--772746 Score: 445
Period size: 93 Copynumber: 2.8 Consensus size: 93
772474 AGGTGTCTTT
* * *
772484 CTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGG
1 CTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
*
772549 ACTAAAGGGTGAAAAGAGAGAGCGTCCTG
65 ACTAAAAGGTGAAAAGAGAGAGCGTCCTG
772578 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
1 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
772643 CTAAAAGGTGAAAAGAGAGAGCGTCCTG
66 CTAAAAGGTGAAAAGAGAGAGCGTCCTG
* *
772671 CTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTTTGAGG
1 CTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGG
*
772736 ACTGAAAGGTG
65 ACTAAAAGGTG
772747 CCACCAACTC
Statistics
Matches: 161, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
93 89 0.55
94 72 0.45
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (93 bp):
CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGA
CTAAAAGGTGAAAAGAGAGAGCGTCCTG
Found at i:772880 original size:116 final size:110
Alignment explanation
Indices: 772666--772908 Score: 344
Period size: 116 Copynumber: 2.2 Consensus size: 110
772656 AGAGAGAGCG
*
772666 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTACTCTT
1 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTAGTGTGGGCTTTAAAAGGCATCCTACTCTT
* *
772731 TGAGGACTGAAAGGTGCCACCAACTCGTATGGGCTTTGAAAGGCA
66 TGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGGCA
*
772776 TCCTACTCTTTGAGGACTAGGAA-GTGCCACCAACTAGTGTGGGCTTTAAAAGGAGAAGGCATCC
1 TCCTGCTCTTTGAGGACTA-GAAGGTGCCACCAACTAGTGTGGGCTTT---A--A-AAGGCATCC
* * * *
772840 TACTTTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCA
59 TACTCTTTGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGGCA
772892 TCCTGCTCTTTGAGGAC
1 TCCTGCTCTTTGAGGAC
772909 AAAAAGGCGC
Statistics
Matches: 117, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
110 41 0.35
111 3 0.03
113 1 0.01
115 1 0.01
116 71 0.61
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (110 bp):
TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTAGTGTGGGCTTTAAAAGGCATCCTACTCTT
TGAGGACTAAAAGGTGCCACCAACTCGTATGGGCTTTAAAAGGCA
Found at i:772915 original size:55 final size:55
Alignment explanation
Indices: 772666--772915 Score: 322
Period size: 55 Copynumber: 4.4 Consensus size: 55
772656 AGAGAGAGCG
* *
772666 TCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * * *
772721 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCGTATGGGCTTTGAAAGGCA
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* *
772776 TCCTACTCTTTGAGGACTAGGAA-GTGCCACCAACTAGTGTGGGCTTTAAAAGGAGAAGGCA
1 TCCTACTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCA
* *
772837 TCCTACTTTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCA
1 TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* *
772892 TCCTGCTCTTTGAGGACAAAAAGG
1 TCCTACTCTTTGAGGACTAAAAGG
772916 CGCAAGGAGG
Statistics
Matches: 169, Mismatches: 18, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
55 116 0.69
56 3 0.02
58 1 0.01
60 3 0.02
61 46 0.27
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (55 bp):
TCCTACTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:772946 original size:210 final size:206
Alignment explanation
Indices: 772721--773128 Score: 493
Period size: 210 Copynumber: 1.9 Consensus size: 206
772711 TTAAAAGGCA
772721 TCCTACTCTTTGAGGACT-GAAAGGTGCCACCAAC-TCGTATGGGCTTT-G-AAAGGCATCCTAC
1 TCCTACTCTTTGAGGACTAGAAA-GTGCCACC-ACTTCGTATGGGCTTTAGAAAAGGCATCCTAC
* *
772782 TCTTTGAGGACTAGGAA-GTGCCACCAACTAGTGTGGGCTTTAAAAGGAGAAGGCATCCTACTTT
64 TCTTTGAGGACTA-AAAGGTGCCACCAACTAGTGTGGGCTTT-----GA-AAGGCATCCTACTCT
* *
772846 TTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAA
122 TTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAA
772911 AAAGGCGCAAGGAGGGAGCG
187 AAAGGCGCAAGGAGGGAGCG
* * * *
772931 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCACTTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTACTCTTTGAGGACTAGAAAGTGCCACCACTTCGTATGGGCTTT---A-GAAAAGGCATCCT
* * ** * ** *
772996 GCTTTTTGAGGACTAAAAGGTGCCACCAGTTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAG
62 ACTCTTTGAGGACTAAAAGGTGCCACCAACTAGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAG
* * *
773061 GACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAAAAGG
127 GACTAAAAGGCGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAAAGG
773126 CGC
192 CGC
773129 CACCAACTTG
Statistics
Matches: 170, Mismatches: 19, Indels: 18
0.82 0.09 0.09
Matches are distributed among these distances:
209 2 0.01
210 115 0.68
211 5 0.03
215 3 0.02
216 45 0.26
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (206 bp):
TCCTACTCTTTGAGGACTAGAAAGTGCCACCACTTCGTATGGGCTTTAGAAAAGGCATCCTACTC
TTTGAGGACTAAAAGGTGCCACCAACTAGTGTGGGCTTTGAAAGGCATCCTACTCTTTGAGGACT
AAAAGGCGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAAAGGCGCA
AGGAGGGAGCG
Found at i:773063 original size:155 final size:155
Alignment explanation
Indices: 772776--773073 Score: 499
Period size: 155 Copynumber: 1.9 Consensus size: 155
772766 TTGAAAGGCA
*
772776 TCCTACTCTTTGAGGACTAGGAAGTGCCACCAACTAGTGTGGGCTTTAAAAGGAGAAGGCATCCT
1 TCCTACTCTTTGAGGACTAGGAAGTGCCACCAACTAGTGTGGGCTTTAAAAGGAAAAGGCATCCT
772841 ACTTTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
66 ACTTTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
772906 GACAAAAAGGCGCAAGGAGGGAGCG
131 GACAAAAAGGCGCAAGGAGGGAGCG
* *
772931 TCCTGCTCTTTGAGGACTAGGAAGTGCCACC-ACTTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 TCCTACTCTTTGAGGACTAGGAAGTGCCACCAAC-TAGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * * **
772995 TGCTTTTTGAGGACTAAAAGGTGCCACCAGTTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGA
65 TACTTTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
*
773060 GGACTAAAAGGCGC
130 GGACAAAAAGGCGC
773074 CACCAACTTG
Statistics
Matches: 133, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
154 2 0.02
155 131 0.98
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.26
Consensus pattern (155 bp):
TCCTACTCTTTGAGGACTAGGAAGTGCCACCAACTAGTGTGGGCTTTAAAAGGAAAAGGCATCCT
ACTTTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAG
GACAAAAAGGCGCAAGGAGGGAGCG
Found at i:773069 original size:55 final size:55
Alignment explanation
Indices: 772928--773182 Score: 343
Period size: 55 Copynumber: 4.5 Consensus size: 55
772918 CAAGGAGGGA
* *
772928 GCGTCCTGCTCTTTGAGGACTAGGAA-GTGCCACC-ACTTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTA-AAAGGCGCCACCAAC-TTGTGTGGGCTTT-----G-AAAG
* * * **
772989 GCATCCTGCTTTTTGAGGACTAAAAGGTGCCACCAGTTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAG
*
773044 GTGTCCTGCTCTTTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAG
773099 GCGTCCTGCTCTTTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAG
*
773154 GCGTCCTGCTCTTTGAGGACTAAAGGGCG
1 GCGTCCTGCTCTTTGAGGACTAAAAGGCG
773183 AAAGGAGAGA
Statistics
Matches: 179, Mismatches: 13, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
55 135 0.75
56 1 0.01
60 2 0.01
61 41 0.23
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:773116 original size:265 final size:266
Alignment explanation
Indices: 772570--773280 Score: 978
Period size: 265 Copynumber: 2.7 Consensus size: 266
772560 AAAAGAGAGA
*
772570 GCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
* *
772634 CTTTGAGGACTAAAAGGTGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAA
66 CTTTGAGGACTAAAAGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAA
* *
772699 CTTGTGTGGGCTTT------AAAAGGCATCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTCG
130 CTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCG
* *
772758 TATGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAGGAAGTGCCACCAACTAGTGTGGGCTTT
195 TATGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAGAAAGCGCCACCAACTAGTGTGGGCTTT
772823 AAAAGGAGAAG
260 ---A-GAGAAG
* * * * *
772834 GCATCCTACTTTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
* * *
772899 CTTTGAGGACAAAAAGGCGCAAGGAGGGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACC-A
66 CTTTGAGGACTAAAAGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTA-GAAGTGCCACCAA
* ** *
772963 CTTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTTTTTGAGGACTAAAAGGTGCCACCAGTTT
130 C-TTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTC
* ** * *
773028 GTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTA-AAAGGCGCCACCAACTTGTGTGGGCT
194 GTATGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAGAAA-GCGCCACCAACTAGTGTGGGCT
773092 TT-GA-AAG
258 TTAGAGAAG
* *
773099 GCGTCCTGCTCTTTGAGGACTAAAAGGCGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
* *
773164 CTTTGAGGACTAAAGGGCGAAAGGAGAGAGCG-CCTTGCTCTTTGAGGATTAAGAAGTGCCACCA
66 CTTTGAGGACTAAAAGGCGAAAGGAGAGAGCGTCC-TGCTCTTTGAGGACT-AGAAGTGCCACCA
*
773228 ACTTGTGTGGGCTTTAAAAGGAAAAGGCATTCTGCTCTTTGAGGACTGAAAAG
129 ACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT-AAAAG
773281 TGGAAGGAGA
Statistics
Matches: 395, Mismatches: 38, Indels: 26
0.86 0.08 0.06
Matches are distributed among these distances:
264 22 0.06
265 264 0.67
266 13 0.03
270 2 0.01
271 94 0.24
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (266 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCT
CTTTGAGGACTAAAAGGCGAAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGTGCCACCAAC
TTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGT
ATGGGCTTTGAAAGGCATCCTACTCTTTGAGGACTAGAAAGCGCCACCAACTAGTGTGGGCTTTA
GAGAAG
Found at i:773127 original size:26 final size:26
Alignment explanation
Indices: 773040--773182 Score: 74
Period size: 26 Copynumber: 5.3 Consensus size: 26
773030 GTGGGCTTTG
*
773040 AAAGGTGTCCTGCTCTTTGAGGACTA
1 AAAGGCGTCCTGCTCTTTGAGGACTA
** * * * *
773066 AAAGGCG-CCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGC-TCTT-TGAGGAC--TA
773095 AAAGGCGTCCTGCTCTTTGAGGACTA
1 AAAGGCGTCCTGCTCTTTGAGGACTA
** * * * *
773121 AAAGGCG-CCACCAACTTGTGTGGGCTTTG
1 AAAGGCGTCCTGC-TCTT-TGAGGAC--TA
773150 AAAGGCGTCCTGCTCTTTGAGGACTA
1 AAAGGCGTCCTGCTCTTTGAGGACTA
*
773176 AAGGGCG
1 AAAGGCG
773183 AAAGGAGAGA
Statistics
Matches: 81, Mismatches: 26, Indels: 20
0.64 0.20 0.16
Matches are distributed among these distances:
25 6 0.07
26 27 0.33
27 10 0.12
28 10 0.12
29 22 0.27
30 6 0.07
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.25
Consensus pattern (26 bp):
AAAGGCGTCCTGCTCTTTGAGGACTA
Found at i:782399 original size:565 final size:565
Alignment explanation
Indices: 781330--782972 Score: 3268
Period size: 565 Copynumber: 2.9 Consensus size: 565
781320 CCTCCAATTG
781330 GGCTGCTTGGATCTGCTCTGTGAGATGACGAGATGGCCTTGATAGTCCTGGTGTGCAAGGTCGAC
1 GGCTGCTTGGATCTGCTCTGTGAGATGACGAGATGGCCTTGATAGTCCTGGTGTGCAAGGTCGAC
781395 TGTTTGTAGCCATTCTTGTTTTCGTTGCTCGAAGTCCCTCCTCAAGTCATCGATTTGGTTTTGAT
66 TGTTTGTAGCCATTCTTGTTTTCGTTGCTCGAAGTCCCTCCTCAAGTCATCGATTTGGTTTTGAT
781460 GATCTTGGACGGAGTGCTCTAAGTTCTGAATCCTGAGCGTTAGAGTTTCATTCTCAACTTGAATC
131 GATCTTGGACGGAGTGCTCTAAGTTCTGAATCCTGAGCGTTAGAGTTTCATTCTCAACTTGAATC
781525 CCCCTTAAACCCTGAATCCGAGCTTCTTACCGTCGGTTCTGCCTTCGATAAGTCGATACAAGAGC
196 CCCCTTAAACCCTGAATCCGAGCTTCTTACCGTCGGTTCTGCCTTCGATAAGTCGATACAAGAGC
781590 TTGGGCTCGAACAAGTTTTTCCTTATTGACCTTGGCTTCTTCTTCATATTGTTGTAATTTCCTCT
261 TTGGGCTCGAACAAGTTTTTCCTTATTGACCTTGGCTTCTTCTTCATATTGTTGTAATTTCCTCT
781655 CGAGTGCCGCCATCTTCATTTCCCCCTTACCACGACGTTGAGACTTGGTTGCCTGGCCAAGGGCC
326 CGAGTGCCGCCATCTTCATTTCCCCCTTACCACGACGTTGAGACTTGGTTGCCTGGCCAAGGGCC
781720 ACAAAGTCTAGTCTCAAACTTTCAAGTTCCTCCTTGAGGTGATCTTTTTCTCTAGCAACCCGGTT
391 ACAAAGTCTAGTCTCAAACTTTCAAGTTCCTCCTTGAGGTGATCTTTTTCTCTAGCAACCCGGTT
781785 TACCTCGCCATCTCGAAGGTAGAGATCCATCTCTAATTGAGTCTTCTCCTCCTTCAAGGTCGACT
456 TACCTCGCCATCTCGAAGGTAGAGATCCATCTCTAATTGAGTCTTCTCCTCCTTCAAGGTCGACT
781850 GTTTGTAGCCATTCTGACTGTTTGTAGCCATCTCTAATTGACCTT
521 GTTTGTAGCCATTCTGACTGTTTGTAGCCATCTCTAATTGACCTT
781895 GGCTGCTTGGATCTGCTCTGTGAGATGACGAGATGGCCTTGATAGTCCTGGTGTGCAAGGTCGAC
1 GGCTGCTTGGATCTGCTCTGTGAGATGACGAGATGGCCTTGATAGTCCTGGTGTGCAAGGTCGAC
*
781960 TGTTTGTAGCCATTCTTATTTTCGTTGCTCGAAGTCCCTCCTCAAGTCATCGATTTGGTTTTGAT
66 TGTTTGTAGCCATTCTTGTTTTCGTTGCTCGAAGTCCCTCCTCAAGTCATCGATTTGGTTTTGAT
782025 GATCTTGGACGGAGTGCTCTAAGTTCTGAATCCTGAGCGTTAGAGTTTCATTCTCAACTTGAATC
131 GATCTTGGACGGAGTGCTCTAAGTTCTGAATCCTGAGCGTTAGAGTTTCATTCTCAACTTGAATC
782090 CCCCTTAAACCCTGAATCCGAGCTTCTTACCGTCGGTTCTGCCTTCGATAAGTCGATACAAGAGC
196 CCCCTTAAACCCTGAATCCGAGCTTCTTACCGTCGGTTCTGCCTTCGATAAGTCGATACAAGAGC
*
782155 TTGGGCTCGAACAAGTTTTTCCTTATTGACCTTGGCTTCTTCTACATATTGTTGTAATTTCCTCT
261 TTGGGCTCGAACAAGTTTTTCCTTATTGACCTTGGCTTCTTCTTCATATTGTTGTAATTTCCTCT
782220 CGAGTGCCGCCATCTTCATTTCCCCCTTACCACGACGTTGAGACTTGGTTGCCTGGCCAAGGGCC
326 CGAGTGCCGCCATCTTCATTTCCCCCTTACCACGACGTTGAGACTTGGTTGCCTGGCCAAGGGCC
782285 ACAAAGTCTAGTCTCAAACTTTCAAGTTCCTCCTTGAGGTGATCTTTTTCTCTAGCAACCCGGTT
391 ACAAAGTCTAGTCTCAAACTTTCAAGTTCCTCCTTGAGGTGATCTTTTTCTCTAGCAACCCGGTT
782350 TACCTCGCCATCTCGAAGGTAGAGATCCATCTCTAATTGAGTCTTCTCCTCCTTCAAGGTCGACT
456 TACCTCGCCATCTCGAAGGTAGAGATCCATCTCTAATTGAGTCTTCTCCTCCTTCAAGGTCGACT
782415 GTTTGTAGCCATTCTGACTGTTTGTAGCCATCTCTAATTGACCTT
521 GTTTGTAGCCATTCTGACTGTTTGTAGCCATCTCTAATTGACCTT
782460 GGCTGCTTGGATCTGCTCTGTGAGATGACGAGATGGCCTTGATAGTCCTGGTGTGCAAGGTCGAC
1 GGCTGCTTGGATCTGCTCTGTGAGATGACGAGATGGCCTTGATAGTCCTGGTGTGCAAGGTCGAC
782525 TGTTTGTAGCCATTCTTGTTTTCGTTGCTCGAAGTCCCTCCTCAAGTCATCGATTTGGTTTTGAT
66 TGTTTGTAGCCATTCTTGTTTTCGTTGCTCGAAGTCCCTCCTCAAGTCATCGATTTGGTTTTGAT
782590 GATCTTGGACGGAGTGCTCTAAGTTCTGAATCCTGAGCGTTAGAGTTTCATTCTCAACTTGAATC
131 GATCTTGGACGGAGTGCTCTAAGTTCTGAATCCTGAGCGTTAGAGTTTCATTCTCAACTTGAATC
782655 CCCCTTAAACCCTGAATCCGAGCTTCTTACCGTCGGTTCTGCCTTCGATAAGTCGATACAAGAGC
196 CCCCTTAAACCCTGAATCCGAGCTTCTTACCGTCGGTTCTGCCTTCGATAAGTCGATACAAGAGC
782720 TTGGGCTCGAACAAGTTTTTCCTTATTGACCTTGGCTTCTTCTTCATATTGTTGTAATTTCCTCT
261 TTGGGCTCGAACAAGTTTTTCCTTATTGACCTTGGCTTCTTCTTCATATTGTTGTAATTTCCTCT
782785 CGAGTGCCGCCATCTTCATTTCCCCCTTACCACGACGTTGAGACTTGGTTGCCTGGCCAAGGGCC
326 CGAGTGCCGCCATCTTCATTTCCCCCTTACCACGACGTTGAGACTTGGTTGCCTGGCCAAGGGCC
782850 ACAAAGTCTAGTCTCAAACTTTCAAGTTCCTCCTTGAGGTGATCTTTTTCTCTAGCAACCCGGTT
391 ACAAAGTCTAGTCTCAAACTTTCAAGTTCCTCCTTGAGGTGATCTTTTTCTCTAGCAACCCGGTT
782915 TACCTCGCCATCTCGAAGGTAGAGATCCATCTCTAATTGAGTCTTCTCCTCCTTCAAG
456 TACCTCGCCATCTCGAAGGTAGAGATCCATCTCTAATTGAGTCTTCTCCTCCTTCAAG
782973 CAGGTGATCT
Statistics
Matches: 1074, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
565 1074 1.00
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (565 bp):
GGCTGCTTGGATCTGCTCTGTGAGATGACGAGATGGCCTTGATAGTCCTGGTGTGCAAGGTCGAC
TGTTTGTAGCCATTCTTGTTTTCGTTGCTCGAAGTCCCTCCTCAAGTCATCGATTTGGTTTTGAT
GATCTTGGACGGAGTGCTCTAAGTTCTGAATCCTGAGCGTTAGAGTTTCATTCTCAACTTGAATC
CCCCTTAAACCCTGAATCCGAGCTTCTTACCGTCGGTTCTGCCTTCGATAAGTCGATACAAGAGC
TTGGGCTCGAACAAGTTTTTCCTTATTGACCTTGGCTTCTTCTTCATATTGTTGTAATTTCCTCT
CGAGTGCCGCCATCTTCATTTCCCCCTTACCACGACGTTGAGACTTGGTTGCCTGGCCAAGGGCC
ACAAAGTCTAGTCTCAAACTTTCAAGTTCCTCCTTGAGGTGATCTTTTTCTCTAGCAACCCGGTT
TACCTCGCCATCTCGAAGGTAGAGATCCATCTCTAATTGAGTCTTCTCCTCCTTCAAGGTCGACT
GTTTGTAGCCATTCTGACTGTTTGTAGCCATCTCTAATTGACCTT
Found at i:787190 original size:52 final size:52
Alignment explanation
Indices: 787105--787229 Score: 205
Period size: 52 Copynumber: 2.4 Consensus size: 52
787095 ATATGAAAAG
* * *
787105 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAACT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
* *
787157 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATTTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
787209 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
787230 AAGATCAGTG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 68 1.00
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:787242 original size:52 final size:51
Alignment explanation
Indices: 787105--787249 Score: 193
Period size: 52 Copynumber: 2.8 Consensus size: 51
787095 ATATGAAAAG
* *
787105 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAACT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* * *
787157 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATTTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
787209 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
787250 ATGTATCGAT
Statistics
Matches: 83, Mismatches: 8, Indels: 4
0.87 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 81 0.98
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:787347 original size:13 final size:13
Alignment explanation
Indices: 787329--787353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
787319 CAAAAAAATA
787329 TGTATCGATACAT
1 TGTATCGATACAT
787342 TGTATCGATACA
1 TGTATCGATACA
787354 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:787349 original size:33 final size:33
Alignment explanation
Indices: 787307--787373 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
787297 AGTAGCTTAA
787307 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
787340 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
787373 A
1 A
787374 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:790273 original size:28 final size:29
Alignment explanation
Indices: 790233--790287 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
790223 TGATGATTAG
790233 AAAAAAAATCGGGATTGGAGTATCCCCTC
1 AAAAAAAATCGGGATTGGAGTATCCCCTC
* *
790262 AAAAATAA-CGGGGTTGGAGTATCCCC
1 AAAAAAAATCGGGATTGGAGTATCCCC
790288 AATTATGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (29 bp):
AAAAAAAATCGGGATTGGAGTATCCCCTC
Found at i:790297 original size:78 final size:78
Alignment explanation
Indices: 790169--790369 Score: 197
Period size: 79 Copynumber: 2.6 Consensus size: 78
790159 AATAATGGGG
* ** * * ** * **
790169 TTGGAGTATCCCCTTGAAAATAATAGGGCTGGAGTATTCTCGGTTGTGAGAAATTGATGA-TTAG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATTCCCAATTATGAGAAATCAAT-ATTTAG
790233 AAAAAAAATCGGGA
65 AAAAAAAATCGGGA
* * *
790247 TTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATTCCCAATTATGAGAAATCAATA-TTTAG
* * * *
790312 GAATAAAGTCGGGG
65 AAAAAAAATCGGGA
* **
790326 TTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATTCCCAAT
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATTCCCAAT
790370 GAAATAACGA
Statistics
Matches: 99, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
77 1 0.01
78 46 0.46
79 52 0.53
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (78 bp):
TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATTCCCAATTATGAGAAATCAATATTTAGA
AAAAAAATCGGGA
Found at i:790387 original size:107 final size:108
Alignment explanation
Indices: 790264--790470 Score: 265
Period size: 108 Copynumber: 1.9 Consensus size: 108
790254 ATCCCCTCAA
* * ** *
790264 AAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTTTGGGAATAAAGTC-GGGGT
1 AAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATGATTTTGAAAATAAA-ACAGGGGT
* **
790327 TGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATTCCCAATG
65 TGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATTCCCAATG
* * * ** *
790371 AAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTTGAAAATAAAACAGGGGTT
1 AAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATGATTTTGAAAATAAAACAGGGGTT
790436 GGAGTATCCCCTCGAAAATAACGGGGTTGGAGTAT
66 GGAGTATCCCCTCGAAAATAACGGGGTTGGAGTAT
790471 CCCCGATTAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
107 35 0.42
108 49 0.58
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27
Consensus pattern (108 bp):
AAATAACGAGGTTGGAGTATCCCCAATTATGAAAAATCAATGATTTTGAAAATAAAACAGGGGTT
GGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATTCCCAATG
Found at i:790526 original size:79 final size:79
Alignment explanation
Indices: 790371--790821 Score: 591
Period size: 79 Copynumber: 5.7 Consensus size: 79
790361 ATTCCCAATG
* * * * * * *
790371 AAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTTGAAAATAAAACAGGGGTT
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAAT-ATTTTGAAAATAAAGCAGGGGTT
*
790436 GGAGTATCCCCTCGA
65 GAAGTATCCCCTCGA
*
790451 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAGCAGGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGAAAATAAAGCAGGGGTTG
*
790516 AAGTATCCCCTCAA
66 AAGTATCCCCTCGA
* ** * *
790530 AAATAACGAGGTTGGAGTATCCCTAATTATGAGAAATTAATATTTTGGAAATAAAGCCGGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGAAAATAAAGCAGGGGTTG
* *
790595 GAGTATCTCCTCGA
66 AAGTATCCCCTCGA
* * * *
790609 AAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATTGATATTTTGGAAATAAAGCTGGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGAAAATAAAGCAGGGGTTG
* *
790674 AAGTATCTCCTCGG
66 AAGTATCCCCTCGA
* * *
790688 AAATAACGGGGTTAGAGTATCCTCGATTATGAGAAATCAATATTTT-AAGAATAAAGCAGGGGTT
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGAA-AATAAAGCAGGGGTT
*
790752 GAAGTATCCCCTCGG
65 GAAGTATCCCCTCGA
* * *
790767 AAATAATGGGGTTGGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAA
1 AAATAACGGGGTTGGAGTATCCCCGATTATGAG-AAATTAATATTTTGAAAATAAA
790822 ATCGGAGCTG
Statistics
Matches: 331, Mismatches: 37, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
78 3 0.01
79 290 0.88
80 38 0.11
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.28
Consensus pattern (79 bp):
AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGAAAATAAAGCAGGGGTTG
AAGTATCCCCTCGA
Found at i:790545 original size:187 final size:185
Alignment explanation
Indices: 790198--790549 Score: 510
Period size: 187 Copynumber: 1.9 Consensus size: 185
790188 ATAATAGGGC
* * *
790198 TGGAGTATTCTCGGTTGTGAGAAATTGATGATTAGAAAAAAAATCGGGATTGGAGTATCCCCTCA
1 TGGAGTATCCTCGATTGTGAAAAATTGATGATTAGAAAAAAAATCGGGATTGGAGTATCCCCTCA
*
790263 AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGTCGGGGTT
66 AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAGTCGGGGTT
* ** ** *
790328 GGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATTCCCAATGAAATAACGAGGT
131 GAAGTATCCCCTCAAAAATAACGAGGTTGGAGTATTCCCAATGAAATAACGAGGT
* * *
790383 TGGAGTATCCTCGATTGTGAAAAATTGATGTTTTTGAAAATAAAA-CAGGGGTTGGAGTATCCCC
1 TGGAGTATCCTCGATTGTGAAAAATTGATG-ATTAGAAAA-AAAATC-GGGATTGGAGTATCCCC
* * *
790447 TCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTGGAAATAAAG-CAGG
63 TCAAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAGTC-GG
790511 GGTTGAAGTATCCCCTCAAAAATAACGAGGTTGGAGTAT
127 GGTTGAAGTATCCCCTCAAAAATAACGAGGTTGGAGTAT
790550 CCCTAATTAT
Statistics
Matches: 147, Mismatches: 16, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
185 27 0.18
186 9 0.06
187 111 0.76
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (185 bp):
TGGAGTATCCTCGATTGTGAAAAATTGATGATTAGAAAAAAAATCGGGATTGGAGTATCCCCTCA
AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAGTCGGGGTT
GAAGTATCCCCTCAAAAATAACGAGGTTGGAGTATTCCCAATGAAATAACGAGGT
Found at i:793228 original size:13 final size:13
Alignment explanation
Indices: 793210--793235 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
793200 ACAAAGATCG
793210 ATGTATCGATACA
1 ATGTATCGATACA
793223 ATGTATCGATACA
1 ATGTATCGATACA
793236 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:793246 original size:21 final size:21
Alignment explanation
Indices: 793222--793263 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
793212 GTATCGATAC
*
793222 AATGTATCGATACATTTCCTT
1 AATGTATCAATACATTTCCTT
793243 AATGTATCAATACATTTCCTT
1 AATGTATCAATACATTTCCTT
793264 GGCAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (21 bp):
AATGTATCAATACATTTCCTT
Found at i:793322 original size:32 final size:32
Alignment explanation
Indices: 793281--793352 Score: 117
Period size: 32 Copynumber: 2.2 Consensus size: 32
793271 GCTTTGTAGT
*
793281 GATACATTGTATCGTTACAAAACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
* *
793313 GATACATTGTATCGATGCAACACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
793345 GATACATT
1 GATACATT
793353 TACTGAATGT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (32 bp):
GATACATTGTATCGATACAAAACTTATGTATC
Found at i:793437 original size:21 final size:21
Alignment explanation
Indices: 793411--793485 Score: 114
Period size: 21 Copynumber: 3.6 Consensus size: 21
793401 TGGGACCTTG
*
793411 TATCGATACATTCTACAAATT
1 TATCGATACATTCTACAAATA
793432 TATCGATACATTCTACAAATA
1 TATCGATACATTCTACAAATA
* * *
793453 TATCTATACATTATACAAATG
1 TATCGATACATTCTACAAATA
793474 TATCGATACATT
1 TATCGATACATT
793486 TGGATAAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 49 1.00
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.37
Consensus pattern (21 bp):
TATCGATACATTCTACAAATA
Found at i:797385 original size:19 final size:19
Alignment explanation
Indices: 797361--797428 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
797351 AATTCAACGA
797361 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
797380 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
797395 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
797412 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
797429 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:797399 original size:32 final size:32
Alignment explanation
Indices: 797363--797425 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
797353 TTCAACGATT
*
797363 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
797395 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
797426 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:797400 original size:13 final size:13
Alignment explanation
Indices: 797382--797406 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
797372 ACATAAGTTT
797382 TGTATCGATACAA
1 TGTATCGATACAA
797395 TGTATCGATACA
1 TGTATCGATACA
797407 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:797473 original size:20 final size:20
Alignment explanation
Indices: 797448--797502 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
797438 GCCAAGGAAA
*
797448 TGTATCGATACATTTTTCTG
1 TGTATCGATACATTTATCTG
** *
797468 TGTATCGATACATGGATCTT
1 TGTATCGATACATTTATCTG
797488 TGTATCGATACATTT
1 TGTATCGATACATTT
797503 GGAAATTTTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (20 bp):
TGTATCGATACATTTATCTG
Found at i:799908 original size:51 final size:53
Alignment explanation
Indices: 799839--800180 Score: 205
Period size: 52 Copynumber: 6.5 Consensus size: 53
799829 AGTTTATCAA
* * * * *
799839 TTCTCCACAATCGAGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
799890 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * *
799944 TTCTTCACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGT
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAA-----T
* * *
800002 TAT-TTC-CGA--GGGGATACTCCAACTCCGATTTTA--TCGCTAAAACACTAAT
1 T-TCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* * *
800051 TT-TTCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAA-T
* *
800104 TTCCTT--TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
800156 TT-TTCACAATTGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
800181 CTCGTTATTT
Statistics
Matches: 223, Mismatches: 39, Indels: 57
0.70 0.12 0.18
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 6 0.03
51 35 0.16
52 77 0.35
53 33 0.15
54 33 0.15
55 22 0.10
57 5 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:800023 original size:28 final size:27
Alignment explanation
Indices: 799956--800024 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
799946 CTTCACAATC
**
799956 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
799983 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
800011 GGGGATACTCCAAC
1 GGGGATACTCCAAC
800025 TCCGATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:800164 original size:104 final size:103
Alignment explanation
Indices: 799844--800179 Score: 297
Period size: 104 Copynumber: 3.2 Consensus size: 103
799834 ATCAATTCTC
* * * *
799844 CACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGGAT
1 CACAATCGAGGATACTCCAA-TCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
799908 ACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
65 ACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTT-TT
* * * * ** * * * ** * *
799949 CACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCCGA
1 CACAATCGAGGATACTCCAATCCGGTTTTATTTTC---AAAACACCAATTTTCCTTTA-AT-C--
* *
800011 GGGGATACTCCAACTCCGATTTTA--TCGCTAAAACACTAATTTTT
59 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTT
* *
800055 CCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 -CACAATCGAGGATACTCCAATCC-GGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
*
800120 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
64 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
*
800160 CACAATTGAGGATACTCCAA
1 CACAATCGAGGATACTCCAA
800180 CCTCGTTATT
Statistics
Matches: 178, Mismatches: 37, Indels: 33
0.72 0.15 0.13
Matches are distributed among these distances:
103 6 0.03
104 44 0.25
105 35 0.20
106 19 0.11
107 38 0.21
108 7 0.04
109 29 0.16
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (103 bp):
CACAATCGAGGATACTCCAATCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
Found at i:800201 original size:28 final size:28
Alignment explanation
Indices: 800169--800240 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
800159 TCACAATTGA
* * **
800169 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
*
800197 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCAGAGG
800225 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
800241 GCTTTATTCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.22, C:0.35, G:0.19, T:0.24
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCAGAGG
Found at i:800209 original size:212 final size:212
Alignment explanation
Indices: 799842--800236 Score: 625
Period size: 212 Copynumber: 1.9 Consensus size: 212
799832 TTATCAATTC
* *
799842 TCCACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
799907 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
*
799972 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCGATTTTATC
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCCGATTTTATC
800037 GCTAAAACACTAATTTT
196 GCTAAAACACTAATTTT
* * * *
800054 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
* *
800118 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATTGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* *
800181 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAAC
800237 CCCGGCTTTA
Statistics
Matches: 167, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
211 30 0.18
212 102 0.61
213 35 0.21
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (212 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCCGATTTTATC
GCTAAAACACTAATTTT
Found at i:800307 original size:107 final size:107
Alignment explanation
Indices: 799902--800319 Score: 298
Period size: 107 Copynumber: 3.9 Consensus size: 107
799892 TTCTATAATC
* * * * * *
799902 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTCC-AAAAATACCAATTTC-TCACAATTGAGGATACTCC
* * *
799967 AACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
64 AACCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCCGA
* * * * * * * *
800011 GGGGATACTCCAACTCCGA-TTT-TATCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCC
1 GGGGATACTCCAACCCCGACTTTATTTC-CAAAAATACCAATTTCT-CACAATTGAGGATACTCC
* * * ***** * * ** * *
800074 AATCCTGGT-TTTATTTTCAAAACGCCAATTTTCCTTTA-AT-C--
64 AACCCCGTTATTTATCGGGGATACTCCAA--CCCCGTTACTTCCGA
* * *
800115 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATTGAGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATTGAGGATACTCCAA
*
800180 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTT-ATCGGGGATACTCCAACCCCGTTACTTCCGA
* * *** *
800223 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTG-GTGATACTCCA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATTGAG-GATACTCCA
*
800286 ACCCCGTTATTT-TCGAAGGGATACTCCAATCCCG
65 ACCCCGTTATTTATCG--GGGATACTCCAACCCCG
800320 ATTTTTTTTT
Statistics
Matches: 241, Mismatches: 53, Indels: 32
0.74 0.16 0.10
Matches are distributed among these distances:
104 45 0.19
105 24 0.10
106 26 0.11
107 98 0.41
108 30 0.12
109 18 0.07
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAATACCAATTTCTCACAATTGAGGATACTCCAA
CCCCGTTATTTATCGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:806303 original size:17 final size:17
Alignment explanation
Indices: 806274--806314 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
806264 CGTCCTTCGT
*
806274 AAAAA-AAACACAAAAA
1 AAAAACAAAAACAAAAA
806290 AAAAACAAAAACAAAAA
1 AAAAACAAAAACAAAAA
*
806307 ACAAACAA
1 AAAAACAA
806315 GAAAAGGGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAACAAAAA
Found at i:806319 original size:13 final size:12
Alignment explanation
Indices: 806274--806311 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
806264 CGTCCTTCGT
806274 AAAAAAAACACAA
1 AAAAAAAACA-AA
806287 AAAAAAAACAAA
1 AAAAAAAACAAA
806299 AACAAAAAACAAA
1 AA-AAAAAACAAA
806312 CAAGAAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 4 0.17
13 20 0.83
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAACAAA
Found at i:807692 original size:28 final size:27
Alignment explanation
Indices: 807644--807716 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
807634 AACATGAATC
* * *
807644 CCTTTTCAAAGCCCACTAATCAGTCGCA
1 CCTTTT-AAAGTCCACAAATCAATCGCA
*
807672 CCTCTTTAAAGTCCACAAATCAATGGCA
1 CCT-TTTAAAGTCCACAAATCAATCGCA
* *
807700 TCTTTTGAAGTCCACAA
1 CCTTTTAAAGTCCACAA
807717 TCGATGGCTC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 13 0.34
28 22 0.58
29 3 0.08
ACGTcount: A:0.32, C:0.30, G:0.11, T:0.27
Consensus pattern (27 bp):
CCTTTTAAAGTCCACAAATCAATCGCA
Found at i:807934 original size:32 final size:32
Alignment explanation
Indices: 807898--808074 Score: 153
Period size: 32 Copynumber: 5.6 Consensus size: 32
807888 CAAGTGGAGG
* *
807898 AACCTTTTCTAAAGCCCACATAAGCTAGTGGC
1 AACCCTTTCTAAAGCCCACACAAGCTAGTGGC
* * * * *
807930 AA-CCTTTTTCAACGCTCACACAAGTTGGTGGC
1 AACCCTTTCT-AAAGCCCACACAAGCTAGTGGC
* *
807962 GACCCTTTCTATAGCCCACACAAG-TCAGTGGC
1 AACCCTTTCTAAAGCCCACACAAGCT-AGTGGC
* * * *
807994 AACCCCTTCTGAAGCCCGCACGAGCTAGTGGC
1 AACCCTTTCTAAAGCCCACACAAGCTAGTGGC
* * *
808026 AACCCTTTCAAAAGCCCACACAAGTTGGTGGC
1 AACCCTTTCTAAAGCCCACACAAGCTAGTGGC
* *
808058 ATCTCTTTCT-AAGCCCA
1 AACCCTTTCTAAAGCCCA
808075 ATGTCGTTGG
Statistics
Matches: 112, Mismatches: 29, Indels: 9
0.75 0.19 0.06
Matches are distributed among these distances:
31 13 0.12
32 92 0.82
33 7 0.06
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (32 bp):
AACCCTTTCTAAAGCCCACACAAGCTAGTGGC
Found at i:808130 original size:43 final size:43
Alignment explanation
Indices: 808082--808838 Score: 290
Period size: 49 Copynumber: 15.7 Consensus size: 43
808072 CCAATGTCGT
* *
808082 TGGCCTTGAATTAGCACATTGGCACCTTTAAGTCTAATATCGC
1 TGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGC
808125 TGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGC
1 TGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGC
* *
808168 TGGCCTTGAATCAGCATATTGGCACCTTTACCACATTTAAGTCCAATGTCGC
1 TGGCCTTGAATCAGCATATTGG---C---A-C-C-TTTAAGTCTAATATCGC
* * * * * * *
808220 TAGCCTTGAATTAGCACATTGGCACCTTTATCTTTAAGTCCAATGTTGT
1 TGGCCTTGAATCAGCATATTGGCA-C-----CTTTAAGTCTAATATCGC
* * *
808269 TGGCCTTGAATCAGCACATTGGCACTATCATCTTTAAGTTTGATATCGC
1 TGGCCTTGAATCAGCATATTGG--C-A-C--CTTTAAGTCTAATATCGC
* * * *
808318 TGGCCTGGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGC
1 TGGCCTTGAATCAGCATATTGGCA-C-----C-TT--TAAGTCTAATATCGC
* * * * *
808370 TGGCTTTGAATCAACACATTGGCACCTTTAAGTCCAATATCAC
1 TGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGC
* * *
808413 TGGCCTTGAATCAGTATATTGGCACTTTTACCATATTTAAGTCCAATGTCGC
1 TGGCCTTGAATCAGCATATTGG--C----ACC---TTTAAGTCTAATATCGC
* * * * * *
808465 TAGCCTTGAATTAGCATATTGTCACCTTCATCTTTAAGTCTGATGTTGC
1 TGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCTAATATCGC
* * *
808514 TGGCCTTGAATCCGTATATTGGCACCATCATCTTTAAGTCTGATATCGC
1 TGGCCTTGAATCAGCATATTGG---CA-C--CTTTAAGTCTAATATCGC
* * * * *
808563 TGGCCTTGAATCAGTATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGT
1 TGGCCTTGAATCAGCATATTGGCA-C-----C-TT--TAAGTCTAATATCGC
* * *
808615 TGGCCTTGAATCAGCACATTGGCATCTTTAAGTCCAATATCGC
1 TGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGC
* *
808658 TGGCCTTGAATCAGCATATTGGCACCTTTACCACATTTAAGTCCAATGTCGC
1 TGGCCTTGAATCAGCATATTGG---C---A-C-C-TTTAAGTCTAATATCGC
* * * * ** *
808710 TAGCCTTGAATTAGCACATTGGCACTTTCATCTTTAAGTCCAAGGTTGC
1 TGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCTAATATCGC
* *
808759 TGGCCTTGAATCAGCTTATTGGCACCTTCATCCTTAAGTCCAATATCGC
1 TGGCCTTGAATCAGCATATTGGCA-C--C-T--TTAAGTCTAATATCGC
*
808808 TGGCCTTGAATCAGCATATTGGCATCTTTAA
1 TGGCCTTGAATCAGCATATTGGCACCTTTAA
808839 CATTCCTAAG
Statistics
Matches: 564, Mismatches: 88, Indels: 124
0.73 0.11 0.16
Matches are distributed among these distances:
43 130 0.23
45 6 0.01
46 20 0.04
47 2 0.00
49 224 0.40
50 9 0.02
51 4 0.01
52 169 0.30
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (43 bp):
TGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGC
Found at i:808131 original size:22 final size:22
Alignment explanation
Indices: 808106--808174 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
808096 CACATTGGCA
808106 CCTTTAAGTCTAATATCGCTGG
1 CCTTTAAGTCTAATATCGCTGG
*
808128 CCTTGAA-TC-AGCATAT---TGG
1 CCTTTAAGTCTA--ATATCGCTGG
808147 CACCTTTAAGTCTAATATCGCTGG
1 --CCTTTAAGTCTAATATCGCTGG
808171 CCTT
1 CCTT
808175 GAATCAGCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 18
0.64 0.04 0.32
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 12 0.33
22 16 0.44
23 1 0.03
24 3 0.08
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (22 bp):
CCTTTAAGTCTAATATCGCTGG
Found at i:808164 original size:21 final size:21
Alignment explanation
Indices: 808099--808164 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
808089 GAATTAGCAC
808099 ATTGGCACCTTTAAGTCTAAT
1 ATTGGCACCTTTAAGTCTAAT
*
808120 ATCGCTGG--CCTTGAA-TC-AGCAT
1 AT---TGGCACCTTTAAGTCTA--AT
808142 ATTGGCACCTTTAAGTCTAAT
1 ATTGGCACCTTTAAGTCTAAT
808163 AT
1 AT
808165 CGCTGGCCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 18
0.63 0.04 0.33
Matches are distributed among these distances:
19 3 0.09
20 1 0.03
21 14 0.41
22 12 0.35
23 1 0.03
24 3 0.09
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (21 bp):
ATTGGCACCTTTAAGTCTAAT
Found at i:808186 original size:22 final size:22
Alignment explanation
Indices: 808118--808186 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
808108 TTTAAGTCTA
808118 ATATCGCTGGCCTTGAATCAGC
1 ATATCGCTGGCCTTGAATCAGC
*
808140 ATAT---TGGCACCTTTAAGTCTA--
1 ATATCGCTGG--CCTTGAA-TC-AGC
808161 ATATCGCTGGCCTTGAATCAGC
1 ATATCGCTGGCCTTGAATCAGC
808183 ATAT
1 ATAT
808187 TGGCACCTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 18
0.64 0.04 0.32
Matches are distributed among these distances:
19 3 0.08
20 1 0.03
21 12 0.33
22 16 0.44
23 1 0.03
24 3 0.08
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (22 bp):
ATATCGCTGGCCTTGAATCAGC
Found at i:808229 original size:52 final size:50
Alignment explanation
Indices: 808150--809093 Score: 639
Period size: 52 Copynumber: 19.0 Consensus size: 50
808140 ATATTGGCAC
*
808150 CTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA-CA
* * * * *
808201 CATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTTA-T
1 C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
* * * * *
808251 CTTTAAGTCCAATGTTGTTGGCCTTGAATCAGCACATTGGCA-CTAT-CA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
*** * *
808299 TCTTTAAGTTTGATATCGCTGGCCTGGAATCAGCATATTGGCATCTTTA-A
1 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
* * * * *
808349 CATTCCTAAGCCCAATGTCGCTGGCTTTGAATCAACACATTGG---C---AC-
1 C-TT--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
* * *
808395 CTTTAAGTCCAATATCACTGGCCTTGAATCAGTATATTGGCACTTTTACCA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA-CA
* * * * *
808446 TATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCATATTGTCACC-TT-CA
1 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
** * * * * *
808495 TCTTTAAGTCTGATGTTGCTGGCCTTGAATCCGTATATTGGCACC-AT-CA
1 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
** * *
808544 TCTTTAAGTCTGATATCGCTGGCCTTGAATCAGTATATTGGCATCTTTA-A
1 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
* * * *
808594 CATTCCTAAGCCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA----T---
1 C-TT--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
808640 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA-CA
* * * *
808691 CATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCA-CTTT-CA
1 C-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
** * *
808740 TCTTTAAGTCCAAGGTTGCTGGCCTTGAATCAGCTTATTGGCACC-TT-CA
1 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
* *
808789 TCCTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTA-A
1 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
* * * * * * *
808839 CATTCCTAAGCCCAATATCGTTGGCCTTGAATTAGCACATTAGTATTCTTCT-CA
1 C-TT--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTT-TACA
* * * * * * ** *
808893 TCTTCAAGTCTAATGTCGCTGG-CTGTGAATCAACACATTGACATTTTTCGCA
1 -CTTTAAGTCCAATATCGCTGGCCT-TGAATCAGCATATTGGCACCTTT-ACA
* * * *
808945 CCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCGT
1 -CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-AC-A
* * *
808998 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTTGCA-C----CA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
* * * *
809043 --TTAAGCCCAATATCGCTGGCCTTGATTTAGCATATTGGCATCTTTATCA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA-CA
809092 CT
1 CT
809094 CTTCTCATCC
Statistics
Matches: 705, Mismatches: 132, Indels: 112
0.74 0.14 0.12
Matches are distributed among these distances:
43 99 0.14
44 1 0.00
45 4 0.01
46 4 0.01
47 1 0.00
48 4 0.01
49 240 0.34
50 19 0.03
51 14 0.02
52 308 0.44
53 6 0.01
54 4 0.01
55 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (50 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACA
Found at i:808379 original size:150 final size:143
Alignment explanation
Indices: 808064--809088 Score: 492
Period size: 150 Copynumber: 7.0 Consensus size: 143
808054 TGGCATCTCT
* *
808064 TTCTAAGCCCAATGTCGTTGGCCTTGAATTAGCACATTGGCA-C----CTTTAAGTCTAATATCG
1 TTCTAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTACTTTAAGTCCAATATCG
* *
808124 CTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATCGCTGGCCTGGAATCAGCATATTG
808189 GCACCTTTACCACA
131 GCACCTTTA-CACA
* * * *
808203 TT-TAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTTATCTTTAAGTCCAATGTT
1 TTCTAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTA-CTTTAAGTCCAATATC
* * *
808267 GTTGGCCTTGAATCAGCACATTGGCACTATCATCTTTAAGTTTGATATCGCTGGCCTGGAATCAG
65 GCTGGCCTTGAATCAGCACATTGG--C-A-C--CTTTAAGTCTAATATCGCTGGCCTGGAATCAG
*
808332 CATATTGGCATCTTTA-ACA
124 CATATTGGCACCTTTACACA
* * *
808351 TTCCTAAGCCCAATGTCGCTGGCTTTGAATCAACACATTGGCA-C----CTTTAAGTCCAATATC
1 TT-CTAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTACTTTAAGTCCAATATC
* * * * * * *
808411 ACTGGCCTTGAATCAGTATATTGGCACTTTTACCATATTTAAGTCCAATGTCGCTAGCCTTGAAT
65 GCTGGCCTTGAATCAGCACATTGG--C----ACC---TTTAAGTCTAATATCGCTGGCCTGGAAT
* *
808476 TAGCATATTGTCACC-TT-CATC-
121 CAGCATATTGGCACCTTTACA-CA
* ** * ** * * * * **
808497 TT-TAAGTCTGATGTTGCTGGCCTTGAATCCGTATATTGGCACCATCATCTTTAAGTCTGATATC
1 TTCTAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTA-CTTTAAGTCCAATATC
* * * * * * *
808561 GCTGGCCTTGAATCAGTATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGTTGGCCTTGAAT
65 GCTGGCCTTGAATCAGCACATTGGCA-C-----C-TT--TAAGTCTAATATCGCTGGCCTGGAAT
*
808626 CAGCACATTGGCA----T---C-
121 CAGCATATTGGCACCTTTACACA
* * * *
808641 TT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCACATTTAAGTCCAAT
1 TTCTAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTT---AC-TTTAAGTCCAAT
* * * * ** * *
808705 GTCGCTAGCCTTGAATTAGCACATTGGCACTTTCATCTTTAAGTCCAAGGTTGCTGGCCTTGAAT
62 ATCGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCTAATATCGCTGGCCTGGAAT
*
808770 CAGCTTATTGGCACC-TT---CA
121 CAGCATATTGGCACCTTTACACA
* * * * * * *
808789 TCCTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAA
1 TTC-TAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTT-AC-TT--TAAGTCCAA
* * * * *
808854 TATCGTTGGCCTTGAATTAGCACATTAGTATTCTTCTCATCTTCAAGTCTAATGTCGCTGG-CTG
61 TATCGCTGGCCTTGAATCAGCACATT-G---GC-AC-C-T-TT-AAGTCTAATATCGCTGGCCTG
* * * ** * *
808918 TGAATCAACACATTGACATTTTTCGCACC
117 -GAATCAGCATATTGGCACCTTT-ACACA
* * * * *
808947 TT-TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCGTCTTTAAGTCCAAT
1 TTCTAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACC-TT-T--ACTTTAAGTCCAAT
* * * * * * * *
809011 ATCGTTGGCCTTGAATCAGCACATTTGCACCATTAAGCCCAATATCGCTGGCCTTGATTTAGCAT
62 ATCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATCGCTGGCCTGGAATCAGCAT
*
809076 ATTGGCATCTTTA
127 ATTGGCACCTTTA
809089 TCACTCTTCT
Statistics
Matches: 702, Mismatches: 115, Indels: 131
0.74 0.12 0.14
Matches are distributed among these distances:
138 36 0.05
139 3 0.00
144 176 0.25
145 2 0.00
146 10 0.01
147 108 0.15
148 20 0.03
149 1 0.00
150 228 0.32
151 4 0.01
152 5 0.01
153 27 0.04
154 3 0.00
156 71 0.10
157 2 0.00
158 5 0.01
159 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (143 bp):
TTCTAAGCCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACCTTTACTTTAAGTCCAATATCG
CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCTAATATCGCTGGCCTGGAATCAGCATATTG
GCACCTTTACACA
Found at i:808425 original size:95 final size:96
Alignment explanation
Indices: 808067--809040 Score: 479
Period size: 101 Copynumber: 9.9 Consensus size: 96
808057 CATCTCTTTC
* * * * *
808067 TAAGCCCAATGTCGTTGGCCTTGAATTAGCACATTGG-C-A-C-CTTTAAGTCTAATATCGCTGG
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGACTATCACTTTAAGTCCAATATCGCTGG
808128 CCTTGAATCAGCATATTGGCAC-----C-TT
66 CCTTGAATCAGCATATTGGCACTTTAACATT
* * * * * *
808153 TAAGTCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCACATTTAAGTCCAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGG-A-C--TATCAC-TTTAAGTCCAATATC
* * * *
808218 GCTAGCCTTGAATTAGCACATTGGCACCTTTATC-TT
61 GCTGGCCTTGAATCAGCATATTGGCA-CTTTAACATT
* * * ***
808254 TAAGTCCAATGTTGTTGGCCTTGAATCAGCACATTGGCACTATCATCTTTAAGTTTGATATCGCT
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGG-ACTATCA-CTTTAAGTCCAATATCGCT
*
808319 GGCCTGGAATCAGCATATTGGCATCTTTAACATT
64 GGCCTTGAATCAGCATATTGGCA-CTTTAACATT
* * *
808353 CCTAAGCCCAATGTCGCTGGCTTTGAATCAACACATTGG-C-A-C-CTTTAAGTCCAATATCACT
1 --TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGACTATCACTTTAAGTCCAATATCGCT
* *
808414 GGCCTTGAATCAGTATATTGGCACTTTTACCATATT
64 GGCCTTGAATCAGCATATTGGCAC-TTTA--ACATT
* * * * * ** * *
808450 TAAGTCCAATGTCGCTAGCCTTGAATTAGCATATTGTCACCT-TCATCTTTAAGTCTGATGTTGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTG-GA-CTATCA-CTTTAAGTCCAATATCGC
* * * * *
808514 TGGCCTTGAATCCGTATATTGGCACCATCATC-TT
63 TGGCCTTGAATCAGCATATTGGCA-CTTTAACATT
** * ** * * * * *
808548 TAAGTCTGATATCGCTGGCCTTGAATCAGTATATTGGCATCTTTAACATTCCTAAGCCCAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGG-A-CTATCAC-TT--TAAGTCCAATATC
* *
808613 GTTGGCCTTGAATCAGCACATTGGCA---T--C-TT
61 GCTGGCCTTGAATCAGCATATTGGCACTTTAACATT
* * * * *
808643 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCACATTTAAGTCCAATGTC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGG-A-C--TATCAC-TTTAAGTCCAATATC
* * * *
808708 GCTAGCCTTGAATTAGCACATTGGCACTTTCATC-TT
61 GCTGGCCTTGAATCAGCATATTGGCACTTT-AACATT
* * * ** *
808744 TAAGTCCAAGGTTGCTGGCCTTGAATCAGCTTATTGGCACCT-TCATCCTTAAGTCCAATATCGC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGG-A-CTATCA-CTTTAAGTCCAATATCGC
808808 TGGCCTTGAATCAGCATATTGGCATCTTTAACATT
63 TGGCCTTGAATCAGCATATTGGCA-CTTTAACATT
* * * * * * * * * *
808843 CCTAAGCCCAATATCGTTGGCCTTGAATTAGCACATTAGTATTCTTCTCATCTTCAAGTCTAATG
1 --TAAGTCCAATGTCGCTGGCCTTGAATCAACACATT-GGA--C-TATCA-CTTTAAGTCCAATA
* * * * * *
808908 TCGCTGG-CTGTGAATCAACACATTGACATTTTTCGCACCTT
59 TCGCTGGCCT-TGAATCAGCATATTGGCA-CTTT--AACATT
* * * * * * *
808949 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCGTCTTTAAGTCCAATATC
1 TAAGTCCAATGTCGCTGGCCTTGAATCAACACATT-G-GAC--TATC-ACTTTAAGTCCAATATC
* * *
809014 GTTGGCCTTGAATCAGCACATTTGCAC
61 GCTGGCCTTGAATCAGCATATTGGCAC
809041 CATTAAGCCC
Statistics
Matches: 697, Mismatches: 132, Indels: 101
0.75 0.14 0.11
Matches are distributed among these distances:
86 31 0.04
89 1 0.00
92 1 0.00
93 1 0.00
94 2 0.00
95 181 0.26
96 1 0.00
97 11 0.02
98 122 0.18
99 17 0.02
100 1 0.00
101 206 0.30
102 3 0.00
103 4 0.01
104 109 0.16
105 2 0.00
106 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (96 bp):
TAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGACTATCACTTTAAGTCCAATATCGCTGG
CCTTGAATCAGCATATTGGCACTTTAACATT
Found at i:808551 original size:245 final size:245
Alignment explanation
Indices: 808121--808879 Score: 1214
Period size: 245 Copynumber: 3.1 Consensus size: 245
808111 AAGTCTAATA
* *
808121 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
*
808186 TTGGCACCTTTACCACATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTTAT
66 TTGGCACCTTTACCACATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTCAT
* * * * *
808251 CTTTAAGTCCAATGTTGTTGGCCTTGAATCAGCACATTGGCACTATCATCTTTAAGTTTGATATC
131 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAGTATATTGGCACCATCATCTTTAAGTCTGATATC
*
808316 GCTGGCCTGGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATG
196 GCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATG
* * * *
808366 TCGCTGGCTTTGAATCAACACATTGGCACCTTTAAGTCCAATATCACTGGCCTTGAATCAGTATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
* * * *
808431 TTGGCACTTTTACCATATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCATATTGTCACCTTCAT
66 TTGGCACCTTTACCACATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTCAT
** *
808496 CTTTAAGTCTGATGTTGCTGGCCTTGAATCCGTATATTGGCACCATCATCTTTAAGTCTGATATC
131 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAGTATATTGGCACCATCATCTTTAAGTCTGATATC
*
808561 GCTGGCCTTGAATCAGTATATTGGCATCTTTAACATTCCTAAGCCCAATG
196 GCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATG
* *
808611 TCGTTGGCCTTGAATCAGCACATTGGCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
1 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
*
808676 TTGGCACCTTTACCACATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACTTTCAT
66 TTGGCACCTTTACCACATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTCAT
* * * **
808741 CTTTAAGTCCAAGGTTGCTGGCCTTGAATCAGCT-TATTGGCACCTTCATCCTTAAGTCCAATAT
131 CTTTAAGTCCAATGTTGCTGGCCTTGAATCAG-TATATTGGCACCATCATCTTTAAGTCTGATAT
*
808805 CGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATA
195 CGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATG
* *
808856 TCGTTGGCCTTGAATTAGCACATT
1 TCGCTGGCCTTGAATCAGCACATT
808880 AGTATTCTTC
Statistics
Matches: 470, Mismatches: 43, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
245 469 1.00
246 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (245 bp):
TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
TTGGCACCTTTACCACATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTCAT
CTTTAAGTCCAATGTTGCTGGCCTTGAATCAGTATATTGGCACCATCATCTTTAAGTCTGATATC
GCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATG
Found at i:808981 original size:156 final size:150
Alignment explanation
Indices: 808164--809040 Score: 526
Period size: 150 Copynumber: 5.9 Consensus size: 150
808154 AAGTCTAATA
* * * * * * *
808164 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCACATTTAAGTCCAATGTCGCTAGCCTTGA
1 TCGCTGGCCTTGAATCAACACATTGACACCTTCATC-C-TTTAAGTCCAATATCGCTGGCCTTGA
* * * * * * *
808229 ATTAGCACATTGGCACCTTTATC-TT-TAAGTCCAATGTTGTTGGCCTTGAATCAGCACATTGGC
64 ATCAGCATATTGGCACCTTTAACATTCTAAGTCCAATATCGTTGGCCTTGAATTAGCACATTAGC
* * *** **
808292 ACTATCATCTTTAAGTTTGATA
129 ACTTTCATCTTCAAGTCCAAGG
* * * * * * * * * * *
808314 TCGCTGGCCTGGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAATGTCGCTGGCTTTGA
1 TCGCTGGCCTTGAATCAACACATTGACACCTTCATCCTT--TAAGTCCAATATCGCTGGCCTTGA
* * ** * * * *
808379 ATCAACACATTGGCA-C-----C-TT-TAAGTCCAATATCACTGGCCTTGAATCAGTATATTGGC
64 ATCAGCATATTGGCACCTTTAACATTCTAAGTCCAATATCGTTGGCCTTGAATTAGCACATTAGC
* * *
808436 ACTTTTACCATATTTAAGTCCAATG
129 AC-TTT--CATCTTCAAGTCCAAGG
* * * * * ** * *
808461 TCGCTAGCCTTGAATTAGCATATTGTCACCTTCAT-CTTTAAGTCTGATGTTGCTGGCCTTGAAT
1 TCGCTGGCCTTGAATCAACACATTGACACCTTCATCCTTTAAGTCCAATATCGCTGGCCTTGAAT
* * * * * ** * * * * *
808525 CCGTATATTGGCACCATCATC-TT-TAAGTCTGATATCGCTGGCCTTGAATCAGTATATTGGCAT
66 CAGCATATTGGCACCTTTAACATTCTAAGTCCAATATCGTTGGCCTTGAATTAGCACATTAGCA-
* * *
808588 CTTTAACAT-TCCTAAGCCCAATG
130 CTTT--CATCTTC-AAGTCCAAGG
* * *
808611 TCGTTGGCCTTGAATCAGCACATTG------GCAT-CTTTAAGTCCAATATCGCTGGCCTTGAAT
1 TCGCTGGCCTTGAATCAACACATTGACACCTTCATCCTTTAAGTCCAATATCGCTGGCCTTGAAT
* * * *
808669 CAGCATATTGGCACCTTTACCACATT-TAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGC
66 CAGCATATTGGCACCTTTA--ACATTCTAAGTCCAATATCGTTGGCCTTGAATTAGCACATTAGC
*
808733 ACTTTCATCTTTAAGTCCAAGG
129 ACTTTCATCTTCAAGTCCAAGG
* * ** *
808755 TTGCTGGCCTTGAATCAGCTTATTGGCACCTTCATCC-TTAAGTCCAATATCGCTGGCCTTGAAT
1 TCGCTGGCCTTGAATCAACACATTGACACCTTCATCCTTTAAGTCCAATATCGCTGGCCTTGAAT
* * *
808819 CAGCATATTGGCATCTTTAACATTCCTAAGCCCAATATCGTTGGCCTTGAATTAGCACATTAGTA
66 CAGCATATTGGCACCTTTAACATT-CTAAGTCCAATATCGTTGGCCTTGAATTAGCACATTAGCA
* *
808884 TTCTTCTCATCTTCAAGTCTAATG
130 --CTT-TCATCTTCAAGTCCAAGG
** *
808908 TCGCTGG-CTGTGAATCAACACATTGACATTTTTCGCA-CCTTTAAGCCCAATATCGCTGGCCTT
1 TCGCTGGCCT-TGAATCAACACATTGACA-CCTT--CATCCTTTAAGTCCAATATCGCTGGCCTT
* ** * * *
808971 GAATCAGCATATTGGCGCCTTTGTCGTCTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATT
62 GAATCAGCATATTGGCACCTTTAACAT-TCTAAGTCCAATATCGTTGGCCTTGAATTAGCACATT
*
809036 TGCAC
126 AGCAC
809041 CATTAAGCCC
Statistics
Matches: 589, Mismatches: 103, Indels: 66
0.78 0.14 0.09
Matches are distributed among these distances:
144 142 0.24
145 4 0.01
146 7 0.01
147 74 0.13
148 7 0.01
149 2 0.00
150 224 0.38
151 2 0.00
152 5 0.01
153 35 0.06
154 3 0.01
155 2 0.00
156 81 0.14
157 1 0.00
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.34
Consensus pattern (150 bp):
TCGCTGGCCTTGAATCAACACATTGACACCTTCATCCTTTAAGTCCAATATCGCTGGCCTTGAAT
CAGCATATTGGCACCTTTAACATTCTAAGTCCAATATCGTTGGCCTTGAATTAGCACATTAGCAC
TTTCATCTTCAAGTCCAAGG
Found at i:809006 original size:104 final size:100
Alignment explanation
Indices: 808107--809096 Score: 553
Period size: 95 Copynumber: 10.0 Consensus size: 100
808097 ACATTGGCAC
* * * * * *
808107 CTTTAAGTCTAATATCGCTGGCCTTGAATCAGCATATTG------GCACCTTTAAGTCTAATATC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACACTTTCACCTTTAAGCCCAATATC
*
808166 GCTGGCCTTGAATCAGCATATTGGCACCTTTACCA-
66 GCTGGCCTTGAATCAGCATATTGGCACCTTT-TCAT
* * * * * * * *
808201 CATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACCTTT-ATCTTTAAGTCCAATG
1 C-TTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACA-CTTTCACCTTTAAGCCCAATA
* * * *
808265 TTGTTGGCCTTGAATCAGCACATTGGCA-C-TATCAT
64 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCAT
*** * * * * * *
808300 CTTTAAGTTTGATATCGCTGGCCTGGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACA-CTTTCACCTT--TAAGCCCAAT
* * * *
808365 GTCGCTGGCTTTGAATCAACACATTGGCA------C--
63 ATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCAT
* ** * * * *
808395 CTTTAAGTCCAATATCACTGGCCTTGAATCAGTATATTGGCACTTTTACCATATTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACACTTTCACC---TTTAAGCCCAAT
* * * *
808460 GTCGCTAGCCTTGAATTAGCATATTGTCACC--TTCAT
63 ATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTCAT
** * * *** * * ** * * **
808496 CTTTAAGTCTGATGTTGCTGGCCTTGAATCCGTATATTGGCACCATCATCTTTAAGTCTGATATC
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACACTTTCACCTTTAAGCCCAATATC
* * *
808561 GCTGGCCTTGAATCAGTATATTGGCATCTTTAACAT
66 GCTGGCCTTGAATCAGCATATTGGCACCTTT-TCAT
* * * * * * *
808597 -TCCTAAGCCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA---T---CTTTAAGTCCAATAT
1 CT-TTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACACTTTCACCTTTAAGCCCAATAT
*
808655 CGCTGGCCTTGAATCAGCATATTGGCACCTTTACCA-
65 CGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCAT
* * * * * * * **
808691 CATTTAAGTCCAATGTCGCTAGCCTTGAATTAGCACATTGGCACTTTCATCTTTAAGTCCAAGGT
1 C-TTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACACTTTCACCTTTAAGCCCAATAT
* *
808756 TGCTGGCCTTGAATCAGCTTATTGGCACC--TTCAT
65 CGCTGGCCTTGAATCAGCATATTGGCACCTTTTCAT
* * * * * *
808790 CCTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTTAACATTCCTAAGCCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACA-CTTTCACCTT--TAAGCCCAAT
* * * * * * *
808855 ATCGTTGGCCTTGAATTAGCACATTAGTATTCTTCTCAT
63 ATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTTTCAT
* * * *
808894 CTTCAAGTCTAATGTCGCTGG-CTGTGAATCAACACATTGACATTTTTCGCACCTTTAAGCCCAA
1 CTTTAAGTCCAATATCGCTGGCCT-TGAATCAACACATTGACA-CTTT--CACCTTTAAGCCCAA
* *
808958 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCGT
62 TATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCAT
* *
808998 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCACATTTG-CAC---CA---TTAAGCCCAATAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACACA-TTGACACTTTCACCTTTAAGCCCAATAT
* * *
809056 CGCTGGCCTTGATTTAGCATATTGGCATCTTTATCACT
65 CGCTGGCCTTGAATCAGCATATTGGCACCTTT-TCA-T
809094 CTT
1 CTT
809097 CTCATCCACA
Statistics
Matches: 710, Mismatches: 139, Indels: 92
0.75 0.15 0.10
Matches are distributed among these distances:
94 7 0.01
95 225 0.32
96 5 0.01
97 3 0.00
98 116 0.16
99 15 0.02
100 3 0.00
101 215 0.30
102 1 0.00
103 5 0.01
104 106 0.15
105 5 0.01
106 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (100 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAACACATTGACACTTTCACCTTTAAGCCCAATATC
GCTGGCCTTGAATCAGCATATTGGCACCTTTTCAT
Found at i:809735 original size:8 final size:7
Alignment explanation
Indices: 809715--809805 Score: 53
Period size: 7 Copynumber: 12.3 Consensus size: 7
809705 ATTATCTTTG
809715 ATAAAAA
1 ATAAAAA
809722 ATAAAAA
1 ATAAAAA
809729 ATAAAAAA
1 AT-AAAAA
*
809737 ATCAAATAT
1 AT-AAA-AA
* *
809746 TTAAGAA
1 ATAAAAA
809753 ATAAAAA
1 ATAAAAA
809760 ATAATATACGA
1 ATAA-A-A--A
*
809771 ATTAAAA
1 ATAAAAA
809778 ATCAAAAA
1 AT-AAAAA
809786 AT--AAA
1 ATAAAAA
809791 AT-AAAA
1 ATAAAAA
809797 ATAAAAA
1 ATAAAAA
809804 AT
1 AT
809806 CAAGGAAACC
Statistics
Matches: 66, Mismatches: 9, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
5 5 0.08
6 5 0.08
7 28 0.42
8 19 0.29
9 4 0.06
10 1 0.02
11 4 0.06
ACGTcount: A:0.74, C:0.03, G:0.02, T:0.21
Consensus pattern (7 bp):
ATAAAAA
Found at i:809803 original size:26 final size:26
Alignment explanation
Indices: 809718--809808 Score: 80
Period size: 26 Copynumber: 3.6 Consensus size: 26
809708 ATCTTTGATA
* *
809718 AAAAATAAAAAATAAAAAAATCAAAT
1 AAAAATAAAAAATCAAAAAATAAAAT
** * *
809744 --ATTTAAGAAAT-AAAAAATAATAT
1 AAAAATAAAAAATCAAAAAATAAAAT
** *
809767 ACGAATTAAAAATCAAAAAATAAAAT
1 AAAAATAAAAAATCAAAAAATAAAAT
809793 AAAAATAAAAAATCAA
1 AAAAATAAAAAATCAA
809809 GGAAACCAAA
Statistics
Matches: 48, Mismatches: 14, Indels: 6
0.71 0.21 0.09
Matches are distributed among these distances:
23 10 0.21
24 8 0.17
25 6 0.12
26 24 0.50
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (26 bp):
AAAAATAAAAAATCAAAAAATAAAAT
Found at i:811847 original size:78 final size:78
Alignment explanation
Indices: 811530--811892 Score: 358
Period size: 79 Copynumber: 4.6 Consensus size: 78
811520 AAATCTAAAA
* * * *
811530 TTTCTATAATCGGGGATACTCTAACCCATTATTTTTGAGGGGATACTCCAGCCCTAG-TTTTTTT
1 TTTC-ATAATCGGGGATACTCTAACCCGTTATTTTTGAGGGGATACTCCAACCCCAGCTTTATTT
*
811594 TTCAAAACACTGACT
65 CT-AAAACACTGACT
* * * *
811609 TTTCACAATCGGGGATACTCTAACCCTGTTATTTTTGAGGGGATACTCCAATCCCGGCCTTATTT
1 TTTCATAATCGGGGATACTCTAACCC-GTTATTTTTGAGGGGATACTCCAACCCCAGCTTTATTT
811674 CTAAAACA-TCGA-T
65 CTAAAACACT-GACT
* * ** **
811687 TTTCTATAATCGGGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCCAGCCTAATATTT-TT
1 TTTC-ATAATCGGGGATACTCTAA-CCCGTTATTTTTGAGGGGATACTCCAACCCCAGCTTTATT
*
811751 TCCAAAACACTGACT
64 TCTAAAACACTGACT
* * ** *
811766 TTTCATAATCGAGGATACTTTAACCCGTTATTTTTGAGAAGATACTCCAACCCCGGCTTTATTTC
1 TTTCATAATCGGGGATACTCTAACCCGTTATTTTTGAGGGGATACTCCAACCCCAGCTTTATTTC
* *
811831 TAAAGCA-TCGATT
66 TAAAACACT-GACT
* * * * * *
811844 TTTCACAATCGAGAATACTCGAACCCCGTTATTTCTGAGAGGATACTCC
1 TTTCATAATCGGGGATACTCTAA-CCCGTTATTTTTGAGGGGATACTCC
811893 GATTCCATTT
Statistics
Matches: 234, Mismatches: 40, Indels: 20
0.80 0.14 0.07
Matches are distributed among these distances:
77 29 0.12
78 87 0.37
79 109 0.47
80 9 0.04
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (78 bp):
TTTCATAATCGGGGATACTCTAACCCGTTATTTTTGAGGGGATACTCCAACCCCAGCTTTATTTC
TAAAACACTGACT
Found at i:811870 original size:156 final size:158
Alignment explanation
Indices: 811530--811892 Score: 500
Period size: 156 Copynumber: 2.3 Consensus size: 158
811520 AAATCTAAAA
* * * * * * *
811530 TTTCTATAATCGGGGATACTCTAA-CCCATTATTTTTGAGGGGATACTCCAGCCCTAGTTTTTTT
1 TTTCTACAATCGAGAATACTCTAACCCCGTTATTTCTGAGGGGATACTCCAGCCCTAATATTTTT
* * **
811594 TTCAAAACACTGACTTTTCACAATCGGGGATACTCTAACCCTGTTATTTTTGAGGGGATACTCCA
66 TCCAAAACACTGACTTTTCACAATCGAGGATACTCTAACCCTGTTATTTTTGAGAAGATACTCCA
*
811659 ATCCCGGCCTTATTTCTAAAACATCGAT
131 ACCCCGGCCTTATTTCTAAAACATCGAT
* * *
811687 TTTCTATAATCGGGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCCAG-CCTAATATTTTT
1 TTTCTACAATCGAGAATACTCTAACCCCGTTATTTCTGAGGGGATACTCCAGCCCTAATATTTTT
* *
811751 TCCAAAACACTGACTTTTCATAATCGAGGATACTTTAACCC-GTTATTTTTGAGAAGATACTCCA
66 TCCAAAACACTGACTTTTCACAATCGAGGATACTCTAACCCTGTTATTTTTGAGAAGATACTCCA
* *
811815 ACCCCGGCTTTATTTCTAAAGCATCGAT
131 ACCCCGGCCTTATTTCTAAAACATCGAT
* *
811843 TTT-TCACAATCGAGAATACTCGAACCCCGTTATTTCTGAGAGGATACTCC
1 TTTCT-ACAATCGAGAATACTCTAACCCCGTTATTTCTGAGGGGATACTCC
811893 GATTCCATTT
Statistics
Matches: 186, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
155 1 0.01
156 89 0.48
157 71 0.38
158 25 0.13
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (158 bp):
TTTCTACAATCGAGAATACTCTAACCCCGTTATTTCTGAGGGGATACTCCAGCCCTAATATTTTT
TCCAAAACACTGACTTTTCACAATCGAGGATACTCTAACCCTGTTATTTTTGAGAAGATACTCCA
ACCCCGGCCTTATTTCTAAAACATCGAT
Found at i:816511 original size:39 final size:38
Alignment explanation
Indices: 816394--816512 Score: 96
Period size: 39 Copynumber: 3.1 Consensus size: 38
816384 TTTAAAGTTA
* * * *
816394 ATTGAAATCTAAAAGATAAGACTAATACATGAA-TTTTT
1 ATTGGAATCTAAAAGATTA-ACTAATATATAAATTTTTT
* * * * * * * *
816432 ATTGGATTTTGAAAGATATTAGTAATGTATAGATTATTT
1 ATTGGAATCTAAAAGAT-TAACTAATATATAAATTTTTT
816471 ATTGGAATCTAAAAGATGTAACTAATATATAAATTTTTT
1 ATTGGAATCTAAAAGAT-TAACTAATATATAAATTTTTT
816510 ATT
1 ATT
816513 AAAATTCGAA
Statistics
Matches: 58, Mismatches: 21, Indels: 3
0.71 0.26 0.04
Matches are distributed among these distances:
38 21 0.36
39 37 0.64
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.41
Consensus pattern (38 bp):
ATTGGAATCTAAAAGATTAACTAATATATAAATTTTTT
Found at i:816805 original size:165 final size:164
Alignment explanation
Indices: 816514--816959 Score: 524
Period size: 165 Copynumber: 2.7 Consensus size: 164
816504 TTTTTTATTA
* * * *
816514 AAATTCGAAAGACGAGACTAATGCATGGATTCTATTTTTAAATAAATATGATAAATGTATTGATT
1 AAATTCGAAAGATGAGACTAATGCAT-GATTCTATTTTTGAATAAATATGATAAATGCATAGATT
* * *
816579 CTTAATGGGAATAAGATTTTTCTAATATGAAAGAAGTTGATAAGATTAATTCATAGATTGTAAAT
65 CTTAATAGGAATAAGATCTTTCTAATATGAAAGAAGTTGATAAGACTAATTCATAGATTGTAAAT
* *
816644 GTTAGACTGCAA-ATAATAAACAAATGCATGGATT-
130 ATCAGACTGCAACA-AATAAACAAATGCATGGATTG
* * * *
816678 ATAGTTTGAAAGAT-AGGATTAATGCATGATTCTATTTTTGAATAAATATGACAAATGCATAGAT
1 A-AATTCGAAAGATGA-GACTAATGCATGATTCTATTTTTGAATAAATATGATAAATGCATAGAT
* * *
816742 TCTTAATAGGAATTAGATGCATTCTAATATGAAAGAAGTTGATAAGACTAATTCATGGATTGTAA
64 TCTTAATAGGAATAAGAT-CTTTCTAATATGAAAGAAGTTGATAAGACTAATTCATAGATTGTAA
* * * *
816807 ATATCATATTGCAACAAATAGACTAATGCATGGATTG
128 ATATCAGACTGCAACAAATAAACAAATGCATGGATTG
* * * *
816844 AAATTCGAAAGATGAGACTAATGCATGAATTCT-GTTTTGAAATAAATGTGATTACTGCATAGAT
1 AAATTCGAAAGATGAGACTAATGCATG-ATTCTATTTTTG-AATAAATATGATAAATGCATAGAT
* * * *
816908 TAC-TGATAGGAATCAGATTCTTTCTGATATGAAAGAACTTGATAAGACTAAT
64 T-CTTAATAGGAATAAGA-TCTTTCTAATATGAAAGAAGTTGATAAGACTAAT
816960 ATATGACGTA
Statistics
Matches: 239, Mismatches: 33, Indels: 18
0.82 0.11 0.06
Matches are distributed among these distances:
164 51 0.21
165 115 0.48
166 71 0.30
167 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.17, T:0.34
Consensus pattern (164 bp):
AAATTCGAAAGATGAGACTAATGCATGATTCTATTTTTGAATAAATATGATAAATGCATAGATTC
TTAATAGGAATAAGATCTTTCTAATATGAAAGAAGTTGATAAGACTAATTCATAGATTGTAAATA
TCAGACTGCAACAAATAAACAAATGCATGGATTG
Found at i:820275 original size:159 final size:157
Alignment explanation
Indices: 820074--820358 Score: 380
Period size: 159 Copynumber: 1.8 Consensus size: 157
820064 TGAAAAATTT
* ** * * * * *
820074 GATATTTTGGAGATAAAATCGGGGTTGGATTATTCTTTAAAAATAGC-AGATTTGGAGTATCCTC
1 GATATTTTGAAGATAAAATCGAAGTTAGAGTATCCTTCAAAAATAACGAGA-TTGGAGTATCCTC
* *
820138 GAGA-T-AAAAATTTTAATATTTTGAAAATAAAAATAGGGTTGGAGTATCC-CTTTAGAAAATAA
65 AAGAGTGAAAAA--TCAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCTC-TTAG-AAATAA
820200 CAGGGTTTGAGTATCCCCGAAAGTGGAAAATC
126 CAGGGTTTGAGTATCCCCGAAAGTGGAAAATC
*
820232 GATATTTTGAAGATAAAATCGAAGTTAGAGTATCCCTTCAAAAATAACGGGATTGGAGTATCCTC
1 GATATTTTGAAGATAAAATCGAAGTTAGAGTAT-CCTTCAAAAATAACGAGATTGGAGTATCCTC
*
820297 AAGAGTGAAAAATCAATATTTTGAAAATAAAACTAGGGTTGGAGTATCCTCTTAGAAATAAC
65 AAGAGTGAAAAATCAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCTCTTAGAAATAAC
820359 GAGGTTGGAG
Statistics
Matches: 110, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
158 35 0.32
159 66 0.60
160 4 0.04
161 5 0.05
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (157 bp):
GATATTTTGAAGATAAAATCGAAGTTAGAGTATCCTTCAAAAATAACGAGATTGGAGTATCCTCA
AGAGTGAAAAATCAATATTTTGAAAATAAAAATAGGGTTGGAGTATCCTCTTAGAAATAACAGGG
TTTGAGTATCCCCGAAAGTGGAAAATC
Found at i:820310 original size:79 final size:76
Alignment explanation
Indices: 820153--820426 Score: 259
Period size: 79 Copynumber: 3.5 Consensus size: 76
820143 AAAAATTTTA
* * *
820153 ATATTTTGAAAATAAAAATAGGGTTGGAGTATCCCTTTAGAAAATAACAGGGTTTGAGTATCCCC
1 ATATTTTGAAAAT-AAAATCGAGTTGGAGTATCCC-TTA-AAAATAAC-GGGTTGGAGTAT-CCC
*
820218 GAA-AGTGGAAAATCG
61 GAAGAGTGAAAAATCG
* *
820233 ATATTTTGAAGATAAAATCGAAGTTAGAGTATCCCTTCAAAAATAACGGGATTGGAGTATCCTC-
1 ATATTTTGAAAATAAAATCG-AGTTGGAGTATCCCTT-AAAAATAACGGG-TTGGAGTATCC-CG
*
820297 AAGAGTGAAAAATCA
62 AAGAGTGAAAAATCG
* * * *
820312 ATATTTTGAAAATAAAACTAGGGTTGGAGTATCCTCTTAGAAATAACGAGGTTGGAGT-TCCCTA
1 ATATTTTGAAAATAAAA-TCGAGTTGGAGTATCC-CTTAAAAATAACG-GGTTGGAGTATCCCGA
*
820376 ATG-GTGAAAAAGCG
63 A-GAGTGAAAAATCG
* * *
820390 ATACTTTAAAAATAAAACCGAGATTGGAGTATCCCTT
1 ATATTTTGAAAATAAAATCGAG-TTGGAGTATCCCTT
820427 TTTGATGTTT
Statistics
Matches: 164, Mismatches: 19, Indels: 25
0.79 0.09 0.12
Matches are distributed among these distances:
77 6 0.04
78 47 0.29
79 79 0.48
80 32 0.20
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (76 bp):
ATATTTTGAAAATAAAATCGAGTTGGAGTATCCCTTAAAAATAACGGGTTGGAGTATCCCGAAGA
GTGAAAAATCG
Found at i:821675 original size:24 final size:24
Alignment explanation
Indices: 821631--821677 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
821621 TGACATTTTT
* *
821631 ATGAAAAGAAAATAAAGAAAAAAA
1 ATGAAAAAAAAAGAAAGAAAAAAA
821655 ATGAAACAAAAAAGAAA-AAAAAA
1 ATGAAA-AAAAAAGAAAGAAAAAA
821678 GTGCATGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.81, C:0.02, G:0.11, T:0.06
Consensus pattern (24 bp):
ATGAAAAAAAAAGAAAGAAAAAAA
Found at i:821676 original size:9 final size:9
Alignment explanation
Indices: 821634--821676 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
821624 CATTTTTATG
821634 AAAAGAAAA
1 AAAAGAAAA
*
821643 TAAAGAAAA
1 AAAAGAAAA
821652 AAAATGAAACAA
1 AAAA-G-AA-AA
821664 AAAAGAAAA
1 AAAAGAAAA
821673 AAAA
1 AAAA
821677 AGTGCATGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
9 17 0.59
10 3 0.10
11 3 0.10
12 6 0.21
ACGTcount: A:0.84, C:0.02, G:0.09, T:0.05
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:821677 original size:10 final size:10
Alignment explanation
Indices: 821634--821678 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
821624 CATTTTTATG
821634 AAAAG-AAAA
1 AAAAGAAAAA
*
821643 TAAAGAAAAA
1 AAAAGAAAAA
*
821653 AAATGAAACAA
1 AAAAGAAA-AA
821664 AAAAGAAAAA
1 AAAAGAAAAA
821674 AAAAG
1 AAAAG
821679 TGCATGGTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 4 0.13
10 17 0.57
11 9 0.30
ACGTcount: A:0.82, C:0.02, G:0.11, T:0.04
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:825578 original size:79 final size:78
Alignment explanation
Indices: 825495--825887 Score: 380
Period size: 79 Copynumber: 5.0 Consensus size: 78
825485 ATTCATGTTT
* * *
825495 TTATTTCCGAGGGGATACTCCAACCCCAGTTTTATTTCCAAAACACTAATTTTTCATAATCGAGG
1 TTATTTTCGAGGAGATACTCCAACCCC-GTTTTATTTCCAAAACACTAATTTTTCACAATCGAGG
825560 ATACTCCAATCCC-G
65 ATACTCCAA-CCCTG
* * * * *
825574 TTATTTTTGAGGAGATACTTCAACCCCGGTTTTATTTCCAAAACA-TCAATTTTTTACCATCGGG
1 TTATTTTCGAGGAGATACTCCAACCCC-GTTTTATTTCCAAAACACT-AATTTTTCACAATCGAG
825638 GATACTCCAACCCTG
64 GATACTCCAACCCTG
* ** * * ** * *
825653 TTATTTTCGAGGAGATACTCTAACCTTGATTTTATTTCTAAAATACTGTTTTTTCACAATTGGGG
1 TTATTTTCGAGGAGATACTCCAACCCCG-TTTTATTTCCAAAACACTAATTTTTCACAATCGAGG
*
825718 ATACTCCAACCCTA
65 ATACTCCAACCCTG
* * * * *
825732 TTATTTCCGAGGGGATACTCCAACCTCGATTTTATTTCCAGAACACTGATTTTTCACAATCGAGG
1 TTATTTTCGAGGAGATACTCCAACCCCG-TTTTATTTCCAAAACACTAATTTTTCACAATCGAGG
*
825797 ATATTCCAATCCC-G
65 ATACTCCAA-CCCTG
* ** * * * *
825811 TTATTTTTGAAAAGATACTCCAACCCCGTCTTTATCTCCAAAATATTAAAATTTTCAACAA-CGA
1 TTATTTTCGAGGAGATACTCCAACCCCGT-TTTATTTCCAAAACACT-AATTTTTC-ACAATCGA
*
825875 GTATACTCCAACC
63 GGATACTCCAACC
825888 ACGTACCCCG
Statistics
Matches: 258, Mismatches: 48, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
78 6 0.02
79 226 0.88
80 22 0.09
81 4 0.02
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (78 bp):
TTATTTTCGAGGAGATACTCCAACCCCGTTTTATTTCCAAAACACTAATTTTTCACAATCGAGGA
TACTCCAACCCTG
Found at i:826767 original size:20 final size:21
Alignment explanation
Indices: 826742--826784 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
826732 CGTTGCGATA
826742 GATACATTTACT-TATGTATC
1 GATACATTTACTATATGTATC
*
826762 GATACATTTACTATTTGTATC
1 GATACATTTACTATATGTATC
826783 GA
1 GA
826785 CACAAATTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (21 bp):
GATACATTTACTATATGTATC
Found at i:827513 original size:43 final size:43
Alignment explanation
Indices: 827458--827558 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
827448 CTCTTTAACA
* * * *
827458 ACAAAGGAAAAAGGAGAACA-AAATG-GATCTTGCTCCTTTAGG
1 ACAAAGGAAAAAGGAGAAAAGAAAAGCG-TCCTGCTCCTTAAGG
827500 ACAAAGGAAAAAAGGA-AAAAGAAAAGCGTCCTGCTCCTTAAGG
1 ACAAAGG-AAAAAGGAGAAAAGAAAAGCGTCCTGCTCCTTAAGG
827543 ACAAAGGAAAAAGGAG
1 ACAAAGGAAAAAGGAG
827559 TATGTCCTAC
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
42 18 0.35
43 32 0.63
44 1 0.02
ACGTcount: A:0.49, C:0.14, G:0.25, T:0.13
Consensus pattern (43 bp):
ACAAAGGAAAAAGGAGAAAAGAAAAGCGTCCTGCTCCTTAAGG
Found at i:827711 original size:44 final size:45
Alignment explanation
Indices: 827646--827847 Score: 197
Period size: 44 Copynumber: 4.7 Consensus size: 45
827636 ATAAAGTGTG
*
827646 TCTTACTCTTTGAAGACAAAAGGAAAAGAAGGAAATGAAGTAC-A
1 TCTTACTCTTTGAGGACAAAAGGAAAAGAAGGAAATGAAGTACGA
* * * * **
827690 TCTTGCTCTTTGAGGATAAAA-GAGAA-AAGGAAATAAAGTGTG-
1 TCTTACTCTTTGAGGACAAAAGGAAAAGAAGGAAATGAAGTACGA
* *
827732 TCCTAC-CTTTCGAGGAC-AAAGGAGAA-AAGGAAATGAAGTACGA
1 TCTTACTCTTT-GAGGACAAAAGGAAAAGAAGGAAATGAAGTACGA
* * * *
827775 -CTTGCTCTTTAAGGACAAAGGGAAAAGAAGGAAATGAAGTGCGA
1 TCTTACTCTTTGAGGACAAAAGGAAAAGAAGGAAATGAAGTACGA
* *
827819 -CCTACTCTTTGAGGACAAAGGGAAAAGAA
1 TCTTACTCTTTGAGGACAAAAGGAAAAGAA
827848 CTGTCATGCT
Statistics
Matches: 129, Mismatches: 22, Indels: 14
0.78 0.13 0.08
Matches are distributed among these distances:
41 7 0.05
42 47 0.36
43 15 0.12
44 60 0.47
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.20
Consensus pattern (45 bp):
TCTTACTCTTTGAGGACAAAAGGAAAAGAAGGAAATGAAGTACGA
Found at i:827724 original size:86 final size:88
Alignment explanation
Indices: 827620--827847 Score: 269
Period size: 86 Copynumber: 2.7 Consensus size: 88
827610 ACTCCTTCAA
* *
827620 GACAAAG-GAAAA-AA--AAATAAAGTGTGTCTTACTCTTTGAAGACAAAAGGAAAAGAAGGAAA
1 GACAAAGAGAAAAGAAGGAAATAAAGTGTGTCCTACTCTTTGAGGACAAAAGGAAAAGAAGGAAA
*
827681 TGAAGTAC-ATCTTGCTCTTTGAG
66 TGAAGTACGA-CTTGCTCTTTAAG
* * *
827704 GATAAA-AGAGAA-AAGGAAATAAAGTGTGTCCTAC-CTTTCGAGGAC-AAAGGAGAA-AAGGAA
1 GACAAAGAGAAAAGAAGGAAATAAAGTGTGTCCTACTCTTT-GAGGACAAAAGGAAAAGAAGGAA
827764 ATGAAGTACGACTTGCTCTTTAAG
65 ATGAAGTACGACTTGCTCTTTAAG
* * * * *
827788 GACAAAGGGAAAAGAAGGAAATGAAGTGCGACCTACTCTTTGAGGACAAAGGGAAAAGAA
1 GACAAAGAGAAAAGAAGGAAATAAAGTGTGTCCTACTCTTTGAGGACAAAAGGAAAAGAA
827848 CTGTCATGCT
Statistics
Matches: 120, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
84 43 0.36
85 17 0.14
86 47 0.39
87 11 0.09
88 2 0.02
ACGTcount: A:0.45, C:0.11, G:0.25, T:0.19
Consensus pattern (88 bp):
GACAAAGAGAAAAGAAGGAAATAAAGTGTGTCCTACTCTTTGAGGACAAAAGGAAAAGAAGGAAA
TGAAGTACGACTTGCTCTTTAAG
Found at i:827790 original size:42 final size:42
Alignment explanation
Indices: 827649--827845 Score: 184
Period size: 42 Copynumber: 4.6 Consensus size: 42
827639 AAGTGTGTCT
* * *
827649 TACTCTTTGAAGACAAAAGGAAAAGAAGGAAATGAAGTAC-ATCT
1 TACTCTTTGAGGAC-AAAGGAGAA-AAGGAAATGAAGTACGA-CC
* * * * ** *
827693 TGCTCTTTGAGGATAAAAGAGAAAAGGAAATAAAGTGTGTCC
1 TACTCTTTGAGGACAAAGGAGAAAAGGAAATGAAGTACGACC
*
827735 TAC-CTTTCGAGGACAAAGGAGAAAAGGAAATGAAGTACGACT
1 TACTCTTT-GAGGACAAAGGAGAAAAGGAAATGAAGTACGACC
* * * *
827777 TGCTCTTTAAGGACAAAGGGAAAAGAAGGAAATGAAGTGCGACC
1 TACTCTTTGAGGACAAA-GGAGAA-AAGGAAATGAAGTACGACC
827821 TACTCTTTGAGGACAAAGG-GAAAAG
1 TACTCTTTGAGGACAAAGGAGAAAAG
827846 AACTGTCATG
Statistics
Matches: 122, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
41 7 0.06
42 54 0.44
43 18 0.15
44 43 0.35
ACGTcount: A:0.43, C:0.12, G:0.26, T:0.19
Consensus pattern (42 bp):
TACTCTTTGAGGACAAAGGAGAAAAGGAAATGAAGTACGACC
Found at i:828029 original size:61 final size:61
Alignment explanation
Indices: 827854--828488 Score: 726
Period size: 62 Copynumber: 10.4 Consensus size: 61
827844 AGAACTGTCA
* ** *
827854 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAAGGAAAGCGTC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAA-GAAAAA-G---GCATC
*
827919 T
61 C
* * * **
827920 TACTCTTTGAGGACT-AAAGTTGGCACCAACTCGTGTAAGCTTTAAAAAGAAAAAGGCATCC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCC
* * **
827981 TACTCTTTGAAGACTAAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCC
* * * **
828042 TACTCTTTAAAGACTAAAAAATGCCACCAACTCGTGTGGGCTTT-AAA-AAAAAGGCATCC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCC
* * * **
828101 TGCTCTTTGAGGATTAAAAGGTGCCACCAACTGGTGTGAGCTTTAAAAAGAAAAAAACATCC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCC
* * *
828163 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGCATCT
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCC
* * * * *
828225 TGCTCTTTCAAGACTAAAAGGTGGCACCAACTCATGTGGGCTTTAAAAAGAAAAAGACATCC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAAGGCATCC
* *
828287 TGCTCTTTGAGGATTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAA-AAAAAGACATCC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCC
* * ** * *
828347 TACTCTTTGAAGACTAAAAGGTGGTACCAAATTGTGTGGGCTTTAAAAGAAAAAGGCGA-CC
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGC-ATCC
* ** *
828408 TGCTCTTTGAGGACTAAAAGGTGGCACCAACTC-TGTGGGCTTTAAAA-AAAAAGGTGTCA
1 TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCC
*
828467 TGCTCTTTGATGACTAAAAGGT
1 TGCTCTTTGAGGACTAAAAGGT
828489 TAAAAGGGGT
Statistics
Matches: 499, Mismatches: 62, Indels: 23
0.85 0.11 0.04
Matches are distributed among these distances:
59 77 0.15
60 70 0.14
61 122 0.24
62 184 0.37
64 1 0.00
65 27 0.05
66 18 0.04
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.25
Consensus pattern (61 bp):
TGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCC
Found at i:828417 original size:245 final size:243
Alignment explanation
Indices: 827856--828459 Score: 766
Period size: 245 Copynumber: 2.5 Consensus size: 243
827846 AACTGTCATG
* * * *
827856 CTCTTTGAGGACTAAAAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAAAAAGGAAAGCGTCTT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAA-G---GCGACCT
* * * ** *
827921 ACTCTTTGAGGACT-AAAGTTGGCACCAACTCGTGTAAGCTTTAAAAAGAAAAAGGCATCCTACT
61 GCTCTTTGAGGACTAAAAGGTGGCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGCATCCTACT
* * *
827985 CTTTGAAGACTAAAAAATGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAGGCATCCTACTCTTT
126 CTTTCAAGACTAAAAAATGCCACCAACTCATGTGGGCTTTAAAAGAAAAAGACATCCTACTCTTT
* *
828050 AAAGACTAAAAAATGCCACCAACTCGTGTGGGCTTTAAAAAAAAGGCATCCTG
191 AAAGACTAAAAAATGCCACCAACTCGTGTGGGCTTTAAAAAAAAGACATCCTA
* * * **
828103 CTCTTTGAGGATTAAAAGGTGCCACCAACTGGTGTGAGCTTTAAAAAGAAAAAAAC-ATCCTGCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAAGGCGA-CCTGCT
* * *
828167 CTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGCATCTTGCTCTT
64 CTTTGAGGACTAAAAGGTGGCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGCATCCTACTCTT
** * * *
828232 TCAAGACTAAAAGGTGGCACCAACTCATGTGGGCTTTAAAAAGAAAAAGACATCCTGCTCTTTGA
129 TCAAGACTAAAAAATGCCACCAACTCATGTGGGCTTT-AAAAGAAAAAGACATCCTACTCTTTAA
* * **
828297 GGATTAAAAGGTGCCACCAACTCGTGTGGGCTTTAAAAAAAAAGACATCCTA
193 AGACTAAAAAATGCCACCAACTCGTGTGGGCTTT-AAAAAAAAGACATCCTA
* ** *
828349 CTCTTTGAAGACTAAAAGGTGGTACCAAATTGTGTGGGCTTTAAAAGAAAAAGGCGACCTGCTCT
1 CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGACCTGCTCT
*
828414 TTGAGGACTAAAAGGTGGCACCAAC-TCTGTGGGCTTTAAAAA-AAAA
66 TTGAGGACTAAAAGGTGGCACCAACTTGTGTGGGCTTTAAAAAGAAAA
828460 GGTGTCATGC
Statistics
Matches: 308, Mismatches: 43, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
243 20 0.06
244 93 0.30
245 97 0.31
246 51 0.17
247 43 0.14
248 4 0.01
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (243 bp):
CTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGGCGACCTGCTCT
TTGAGGACTAAAAGGTGGCACCAACTTGTGTGGGCTTTAAAAAGAAAAAAGCATCCTACTCTTTC
AAGACTAAAAAATGCCACCAACTCATGTGGGCTTTAAAAGAAAAAGACATCCTACTCTTTAAAGA
CTAAAAAATGCCACCAACTCGTGTGGGCTTTAAAAAAAAGACATCCTA
Found at i:828570 original size:32 final size:30
Alignment explanation
Indices: 828513--828585 Score: 101
Period size: 32 Copynumber: 2.4 Consensus size: 30
828503 CAGAGTCATG
* * *
828513 GACTTTGAAAAGAGATGTCAGTAAGTTGTA
1 GACTTTGAAAAGAGATGCCACTAAGTCGTA
828543 GACTTTGAAGCAAGAGATGCCACTAAGTCGTA
1 GACTTTGAA--AAGAGATGCCACTAAGTCGTA
828575 GACTTTGAAAA
1 GACTTTGAAAA
828586 ATGTTACTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 11 0.29
32 27 0.71
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.26
Consensus pattern (30 bp):
GACTTTGAAAAGAGATGCCACTAAGTCGTA
Found at i:834491 original size:9 final size:9
Alignment explanation
Indices: 834476--834506 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
834466 ACATTTTATG
834476 AAAAGAAAA
1 AAAAGAAAA
*
834485 GAAAGAAAA
1 AAAAGAAAA
834494 AAAAGAAAA
1 AAAAGAAAA
834503 AAAA
1 AAAA
834507 TTGCATGGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:840564 original size:16 final size:16
Alignment explanation
Indices: 840527--840583 Score: 66
Period size: 16 Copynumber: 3.8 Consensus size: 16
840517 AACAGCCCTT
840527 TTCCTTT-TTTTTT-C
1 TTCCTTTATTTTTTCC
*
840541 TT-CATTATTTTTTCC
1 TTCCTTTATTTTTTCC
*
840556 TTCCTTTATTTTTTCT
1 TTCCTTTATTTTTTCC
*
840572 TTCCTTTCTTTT
1 TTCCTTTATTTT
840584 CCAAAGTTCA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
13 3 0.08
14 8 0.22
15 3 0.08
16 22 0.61
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (16 bp):
TTCCTTTATTTTTTCC
Found at i:840825 original size:70 final size:69
Alignment explanation
Indices: 840639--840834 Score: 200
Period size: 71 Copynumber: 2.8 Consensus size: 69
840629 TTTGAGTTTT
* *
840639 ATAATCAAATAAAAAAATAAATTTTAAATTTTTATAAATAAAAGTAAATTATACCATCAAAATTT
1 ATAATCAAAT-AAAAAATAAA-TTTAAATTTTTACAAATAAAA-TAAATTATACCATCAAAAATT
*
840704 TAAACTT
63 TAAACTC
* * * * *
840711 AT-TTCATACTTAAAAAACACATTTAAATTTTTACAAATCAAAATAAATTATACCCT-AAAAATT
1 ATAATCA-A-ATAAAAAATAAATTTAAATTTTTACAAAT-AAAATAAATTATACCATCAAAAATT
840774 TAAACCTGC
63 TAAA-CT-C
* *
840783 ATAATCAAATAAAAAATAAATTTAAA-TTCTACAAATATAAATAAATAATACC
1 ATAATCAAATAAAAAATAAATTTAAATTTTTACAAATA-AAATAAATTATACC
840835 TTTAATCAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
69 1 0.01
70 32 0.31
71 48 0.47
72 18 0.17
73 4 0.04
ACGTcount: A:0.55, C:0.11, G:0.01, T:0.33
Consensus pattern (69 bp):
ATAATCAAATAAAAAATAAATTTAAATTTTTACAAATAAAATAAATTATACCATCAAAAATTTAA
ACTC
Found at i:841466 original size:14 final size:13
Alignment explanation
Indices: 841436--841477 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
841426 ATATACGTAA
841436 AAAAAATA-TTTT
1 AAAAAATATTTTT
*
841448 GAAAAATATTTTT
1 AAAAAATATTTTT
841461 CAAAAAATATATTTT
1 -AAAAAATAT-TTTT
841476 AA
1 AA
841478 GAATTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 7 0.28
13 4 0.16
14 10 0.40
15 4 0.16
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (13 bp):
AAAAAATATTTTT
Found at i:841746 original size:14 final size:14
Alignment explanation
Indices: 841727--841771 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
841717 CACATACACG
841727 TAAAAAATGTATTT
1 TAAAAAATGTATTT
*
841741 TAAAAAATAT-TTT
1 TAAAAAATGTATTT
*
841754 TCAAAAAACGTATTT
1 T-AAAAAATGTATTT
841769 TAA
1 TAA
841772 GAATTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 4 0.15
14 18 0.69
15 4 0.15
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.40
Consensus pattern (14 bp):
TAAAAAATGTATTT
Found at i:848418 original size:19 final size:19
Alignment explanation
Indices: 848394--848461 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 19
848384 AATTCAACAA
*
848394 TTTGTATCGTTACATAAGT
1 TTTGTATCGATACATAAGT
*
848413 TTTGTATCGGTAC--AA--
1 TTTGTATCGATACATAAGT
848428 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
848445 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
848462 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 10 0.24
15 2 0.05
17 2 0.05
19 27 0.66
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:848440 original size:32 final size:32
Alignment explanation
Indices: 848396--848458 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
848386 TTCAACAATT
* * *
848396 TGTATCGTTACATAAGTTTTGTATCGGTACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
848428 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
848459 TAATTAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:848538 original size:33 final size:33
Alignment explanation
Indices: 848481--848547 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
848471 GCCAAGGAAA
***
848481 TGTATCGATACATTTTTCTGTGTATCAATACAT
1 TGTATCGATACATGGATCTGTGTATCAATACAT
* *
848514 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCAATACAT
848547 T
1 T
848548 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCAATACAT
Found at i:850960 original size:51 final size:53
Alignment explanation
Indices: 850876--851006 Score: 178
Period size: 51 Copynumber: 2.5 Consensus size: 53
850866 AGTTTCTCAA
* * * *
850876 TTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
850927 TT-TTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
850981 TTCTTCACAATCGGGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
851007 CCTGTTAATC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
50 2 0.03
51 34 0.49
53 9 0.13
54 21 0.30
55 3 0.04
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:851020 original size:27 final size:27
Alignment explanation
Indices: 850990--851090 Score: 148
Period size: 27 Copynumber: 3.7 Consensus size: 27
850980 TTTCTTCACA
850990 ATCGGGGATACTCCAACCCTGTTAATC
1 ATCGGGGATACTCCAACCCTGTTAATC
851017 ATCGGGGATACTCCAACCCTGTTAATC
1 ATCGGGGATACTCCAACCCTGTTAATC
* *
851044 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCTGTTA-ATC
***
851072 CGAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
851091 CGACTTTATT
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
27 50 0.74
28 18 0.26
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCTGTTAATC
Found at i:851254 original size:53 final size:53
Alignment explanation
Indices: 851075--851297 Score: 222
Period size: 52 Copynumber: 4.3 Consensus size: 53
851065 TTATTTCCGA
** * *** *
851075 GGGGATACTCCAACCCCGACTTTATTTCC-AAAATATTGATTTT-TCATAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAAACACCAATTTTCCCATAATC
* * * * *
851126 GGGGATACTCCAACCCCGGTTTTA-TTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAAACACCAATTTTCCCATAATC
* *
851178 GGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTCCCTTTAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAAACACCAATTTTCCC-ATAATC
* * * * *
851231 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTT-TCACAATC
1 GGGGATACTCCAACCCCGGTTTTATTTCCAAAAACACCAATTTTCCCATAATC
*
851283 GAGGATACTCCAACC
1 GGGGATACTCCAACC
851298 TCGTTATTTC
Statistics
Matches: 145, Mismatches: 22, Indels: 9
0.82 0.12 0.05
Matches are distributed among these distances:
50 3 0.02
51 33 0.23
52 62 0.43
53 34 0.23
54 13 0.09
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (53 bp):
GGGGATACTCCAACCCCGGTTTTATTTCCAAAAACACCAATTTTCCCATAATC
Found at i:851316 original size:28 final size:28
Alignment explanation
Indices: 851280--851352 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
851270 ATTTTTCACA
* * *
851280 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
851308 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
851336 CGAGGGGATACTCCAAC
1 ATCGGGGATACTCCAAC
851353 TCCGGCTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:851422 original size:107 final size:107
Alignment explanation
Indices: 851231--851430 Score: 260
Period size: 107 Copynumber: 1.9 Consensus size: 107
851221 CCCTTTAATC
* *
851231 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
*
851296 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
66 CCCCGTTATTTCA-CGGGGATACTCCAACCCCGTTACTTCCGA
* * *** * * *
851339 GGGGATACTCCAACTCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACTCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
851403 CCCCGTTATTTTCGA-GGGGATACTCCAA
66 CCCCGTTA-TTTC-ACGGGGATACTCCAA
851431 TCTCGATTTT
Statistics
Matches: 79, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
107 52 0.66
108 26 0.33
109 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (107 bp):
GGGGATACTCCAACTCCGACTTTATTTCCAAAAATACCAATTTCTCACAATCGAGGATACTCCAA
CCCCGTTATTTCACGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:851459 original size:79 final size:79
Alignment explanation
Indices: 851310--851493 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 79
851300 GTTATTTCAT
* * *
851310 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACTCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGACTTTATTCCCAAAATAT
* * *
851375 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * ** *
851389 TGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-TCTCGATTTTTTTTTC-TAATC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTC-CGACTTTATTCCCAAAAT-
851452 ATCGATTTCTCACAAC
64 ATCGATTTCTCACAAC
*
851468 CGGGGATACTCCAGCCCCGTTATTTT
1 CGGGGATACTCCAACCCCGTTATTTT
851494 AAAGGGAACA
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
78 5 0.06
79 84 0.94
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.33
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCGACTTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:862412 original size:12 final size:12
Alignment explanation
Indices: 862397--862423 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
862387 AAGAAGAAGA
862397 AAAAAACAAAAC
1 AAAAAACAAAAC
862409 AAAAAACAAAAC
1 AAAAAACAAAAC
862421 AAA
1 AAA
862424 GAAAAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAACAAAAC
Found at i:862428 original size:26 final size:26
Alignment explanation
Indices: 862379--862428 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
862369 AAAAAAAGGC
* *
862379 AAACAAAAAAGAAGAAGAAAAAAACA
1 AAACAAAAAACAAGAACAAAAAAACA
862405 AAACAAAAAACAA-AACAAAGAAAA
1 AAACAAAAAACAAGAACAAA-AAAA
862429 AGAGAGAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.82, C:0.10, G:0.08, T:0.00
Consensus pattern (26 bp):
AAACAAAAAACAAGAACAAAAAAACA
Found at i:863926 original size:55 final size:55
Alignment explanation
Indices: 863416--863925 Score: 735
Period size: 55 Copynumber: 9.3 Consensus size: 55
863406 GCTTTTTAGC
*
863416 CCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGT
1 CCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGT
* * *
863471 CCTCAAAGAGTAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCTATT
1 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC-AGT
* ** *
863526 CCTCAAAGAGTAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAAT
1 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
863581 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
1 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
863636 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
1 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
* * *
863691 CCTCAAAGAGCAAGACACATCTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
1 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
* * *
863746 TCTCAAAGAGCAGGACACCTTTCAAAGCCCACCCAAGTTGGTGGCATTTTCCAAT
1 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
* *
863801 CCTTAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGT
1 CCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGT
** * *
863856 CCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTT-TAGT
1 CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGT
*
863911 CCTCAATGAGCAGGA
1 CCTCAAAGAGCAGGA
863926 TACACTTTAT
Statistics
Matches: 416, Mismatches: 32, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
53 2 0.00
54 5 0.01
55 400 0.96
56 9 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (55 bp):
CCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGT
Found at i:864742 original size:19 final size:19
Alignment explanation
Indices: 864718--864785 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
864708 AATTCAACAA
864718 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
864737 TTTGTATCGGTAC--AA--
1 TTTGTATCGATACATAAGT
864752 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
864769 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
864786 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 10 0.24
15 2 0.05
17 2 0.05
19 27 0.66
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:864761 original size:32 final size:32
Alignment explanation
Indices: 864720--864782 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
864710 TTCAACAATT
* *
864720 TGTATCGATACATAAGTTTTGTATCGGTACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
864752 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
864783 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:864843 original size:13 final size:13
Alignment explanation
Indices: 864825--864850 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
864815 CATTTTTCTG
864825 TGTATCGATACAT
1 TGTATCGATACAT
864838 TGTATCGATACAT
1 TGTATCGATACAT
864851 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:864847 original size:33 final size:33
Alignment explanation
Indices: 864805--864871 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
864795 GCTAAGGAAA
***
864805 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
864838 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
864871 T
1 T
864872 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:867345 original size:27 final size:28
Alignment explanation
Indices: 867315--867390 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
867305 TTTCTTCACA
867315 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
867342 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
867370 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
867391 ACTTTATTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:867499 original size:52 final size:51
Alignment explanation
Indices: 867206--867595 Score: 267
Period size: 51 Copynumber: 7.4 Consensus size: 51
867196 CTCAATTCTC
* * *
867206 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAAC-ACTAA-TTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAAC-AATTTTT
* * *
867256 CTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
1 C-ACAATCGGGGATACTCCAACCCCGATTTTATTTCC--AAAACAACAATTT-TT
* * * ** **
867311 CACAATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGTTATTT
1 CACAATCGGGGATACTCCAACCCCGATTTTAT-TTC---CA-A-AACAA--CAATT-TTT
* * * ***
867369 C-CGA--GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAACAATTTTT
* * * *
867417 CATAATCGGGGATACTCCAACCCCGATTTTATTGCTAAAACAATAATTTTT
1 CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAACAATTTTT
* * *
867468 CCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAA-TTTT
1 -CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAACAATTTTT
* * *
867519 CCCTTTAATTGGGGATACTCCAACTCCGATTTTATTTCCAAAA-ATACCAATTTTT
1 CAC---AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACA-A-CAATTTTT
*
867574 CACAATCGAGGATACTCCAACC
1 CACAATCGGGGATACTCCAACC
867596 TCGTTATTTC
Statistics
Matches: 263, Mismatches: 50, Indels: 52
0.72 0.14 0.14
Matches are distributed among these distances:
48 4 0.02
49 3 0.01
50 3 0.01
51 75 0.29
52 61 0.23
53 43 0.16
54 29 0.11
55 28 0.11
56 4 0.02
57 6 0.02
58 6 0.02
59 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (51 bp):
CACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACAACAATTTTT
Found at i:867614 original size:28 final size:28
Alignment explanation
Indices: 867578--867654 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
867568 ATTTTTCACA
* * *
867578 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
867606 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
867634 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
867655 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:867676 original size:264 final size:263
Alignment explanation
Indices: 867204--867705 Score: 810
Period size: 264 Copynumber: 1.9 Consensus size: 263
867194 TTCTCAATTC
* * *
867204 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
*
867269 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
*
867334 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATT
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
* *
867399 TCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGATTTTATTGCTAAAACAATAAT
196 CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGATTTTATTGCTAAAACAATAAT
867464 TTT
261 TTT
* * *
867467 TCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCCTTTAATTGGG
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTT--CTATAATCGGG
*
867532 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAAC
* * *
867595 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
129 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTT
* * *
867660 ATTCCCAAATTATTGATTTCTCATAATTGGGGATACTCTAACCCCG
193 ATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCG
867706 TTATTTTCGA
Statistics
Matches: 219, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
263 76 0.35
264 108 0.49
265 35 0.16
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (263 bp):
TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGACTTTATT
CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGATTTTATTGCTAAAACAATAAT
TTT
Found at i:867757 original size:79 final size:79
Alignment explanation
Indices: 867608--867810 Score: 226
Period size: 79 Copynumber: 2.6 Consensus size: 79
867598 GTTATTTCAT
* * * *
867608 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAATTAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAATCAT
* * *
867673 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * * * ** *
867687 TGGGGATACTCTAACCCCGTTATTTTCGAGGGGATACTCCAATCCCGATTTTTTTTTCTAATCAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAATCAT
867752 CGATTTCTCACAAC
66 CGATTTCTCACAAC
* ** * *
867766 CGGGGATACTCCAGCCCCGTTATTTTAAAGGGAACACTCCAACCC
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC
867811 TGTTATTATC
Statistics
Matches: 101, Mismatches: 23, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
79 101 1.00
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAATCAT
CGATTTCTCACAAC
Found at i:870012 original size:17 final size:16
Alignment explanation
Indices: 869972--870018 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
869962 TTTATATGTG
869972 TATTATAATTA-ATTAT
1 TATT-TAATTATATTAT
869988 TATTTAATTATATTAT
1 TATTTAATTATATTAT
* *
870004 ATCTTTAATTTTATT
1 -TATTTAATTATATT
870019 TTTTAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 6 0.22
16 9 0.33
17 12 0.44
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTTAATTATATTAT
Done.