genome.fa.s1531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1531
Parameters: 2 7 7 80 10 50 1000
Length:  66980

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2411--2459	22	2.2	22	100	0	98	67	8	8	16	1.40
3379--3453	20	3.8	20	80	3	80	40	12	13	34	1.81
3376--3453	40	2.0	39	87	2	111	39	12	12	34	1.82
3673--3702	2	14.5	2	93	6	51	50	0	3	46	1.18
4015--4348	183	1.8	183	94	1	598	17	23	14	44	1.85
8685--8728	22	2.0	23	86	4	63	61	0	0	38	0.96
10335--10359	13	1.9	13	100	0	50	32	8	28	32	1.86
11943--11971	3	9.7	3	100	0	58	68	0	0	31	0.89
12080--12115	17	2.1	17	89	0	54	52	0	2	44	1.15
12593--12631	19	2.1	18	90	4	60	30	0	2	66	1.05
13059--13111	26	2.0	26	85	14	72	52	0	0	47	1.00
15150--15206	18	3.4	18	71	24	61	52	0	0	47	1.00
15166--15216	26	1.9	27	84	4	68	52	0	0	47	1.00
15438--15465	4	7.0	4	100	0	56	75	0	0	25	0.81
15570--15610	3	13.3	3	94	5	73	31	0	0	68	0.90
15701--15804	29	3.5	29	67	20	72	41	1	0	55	1.17
15794--15821	14	2.0	14	100	0	56	35	0	0	64	0.94
16729--16758	2	15.0	2	100	0	60	50	0	0	50	1.00
20108--20151	11	4.3	10	83	11	54	75	0	0	25	0.81
21546--21599	22	2.5	23	79	11	69	46	0	0	53	1.00
21557--21596	21	1.9	21	90	10	64	40	0	0	60	0.97
22529--22569	22	1.9	21	85	5	55	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28567--28619	22	2.5	22	81	9	65	52	0	1	45	1.11
29540--29750	36	5.9	36	82	5	223	13	24	29	32	1.94
29540--29744	72	2.8	72	85	2	261	13	25	28	32	1.94
29540--29739	108	1.9	108	84	4	269	13	24	28	33	1.93
32516--32565	24	2.1	23	81	3	55	8	30	4	58	1.45
33709--33779	32	2.2	33	84	2	90	40	2	1	54	1.23
34814--34854	21	2.0	21	85	0	55	14	31	43	9	1.78
34850--34929	33	2.4	33	95	0	142	20	12	52	15	1.74
34923--34986	24	2.7	24	82	0	83	18	10	56	14	1.67
35128--35153	4	6.5	4	100	0	52	73	0	0	26	0.84
35305--35358	24	2.4	22	78	15	56	50	0	1	48	1.11
36138--36227	45	2.0	45	95	0	162	22	44	24	8	1.81
38618--38691	35	2.2	36	81	16	95	43	1	1	54	1.17
43443--43578	56	2.4	56	91	2	220	31	19	17	31	1.95
43658--43997	170	2.0	166	86	5	468	41	19	11	27	1.86
52436--52485	25	2.0	25	84	11	66	26	0	2	72	0.96
52456--52485	16	1.9	15	93	6	51	23	0	3	73	0.98
52538--52579	22	2.0	21	90	4	66	38	4	11	45	1.62
53066--53116	24	2.2	23	82	3	57	41	3	1	52	1.31
53222--53284	18	3.5	18	70	22	51	46	0	1	52	1.10
59289--59317	2	14.5	2	100	0	58	51	0	48	0	1.00
60339--60422	24	3.6	23	74	16	75	61	0	2	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60367--60414	25	1.9	25	87	8	71	56	0	2	41	1.11
60593--60621	3	9.7	3	100	0	58	65	0	0	34	0.93
61135--61180	23	2.0	23	100	0	92	43	0	17	39	1.49
61676--61714	20	2.0	20	90	5	62	58	0	0	41	0.98
62855--62895	22	1.9	21	85	14	57	58	0	2	39	1.11
63546--63612	29	2.3	30	80	14	79	55	0	0	44	0.99
63650--63697	2	24.0	2	100	0	96	50	0	0	50	1.00
66068--66117	22	2.3	22	83	10	59	52	0	0	48	1.00

Tables:   1

The End!