Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1532
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14525
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Found at i:2354 original size:465 final size:472
Alignment explanation
Indices: 612--3174 Score: 3353
Period size: 465 Copynumber: 5.5 Consensus size: 472
602 TTCTTTTCCA
*
612 TTCCAACGTTTTT--TA-AAGTAAAG-TTGTCCTCTTAAATAAGACAAACAAGAATTGTCATGCT
1 TTCCACCGTTTTTGATAGAAGTAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATTGTCATGCT
* *
673 AA-CCCCATTCTTTTCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGAATAACACGATTTT
65 AATCCCCATTCTTTTCATGATTAGGCACCATAAA-CTTGTCTTCTCATAAGGAT-ACACGATATT
* * *
737 GATGCTTTGGTTTCGTAGGAAAGGCGTTCTTGTCA-CAA-TTTTGTAAAGTCTAAGTTTGTGCCT
128 GATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCT
* *
800 CAAATGAAGACAAACGAGGATTCTAGTCATGACCTTCATTCTTTTTGTGACTAGGGACTATAAA-
193 CAAATG-AGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAAC
*
864 ACATTCTCATCATTAGGAT-AATGATATTCAACGATTTTCTTTTGCATGG-AATCTTTTCTTTGC
257 ACATTCTC-TCATTAGGATAAACGATATTC-ACGATTTTCTTTTGCATGGAAATCTTTTCTTTG-
* * *
927 CCCATTTTCCTTAATAATCAAAATTCATCCCATAATTAAGGCAAGCATCGATTCCTCGTAAGAGG
319 CCCATTTTCCTTAAT-ATCAAAATTCA-CCCATAATTATGACAAGCTTCGATT-CTCGTAAGAGG
* * *
992 CTCCATTCTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACACATGA
381 CTCCATGC-TTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATACATGACA-TTGA
1057 TGCTTTGGTGTCGCAAGAAAATGTTTTCT
444 TGCTTTGGTGTCGCAAGAAAATGTTTTCT
*
1086 TTCCAACCGTTTTT-ATAGAAGGAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCT
1 TTCC-ACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCT
* *
1150 AATCCCTATTCTTTTCACGATTAGGC-CCATAAACTTGTCTTCTCATAAGGATACACGAT-TATG
65 AATCCCCATTCTTTTCATGATTAGGCACCATAAACTTGTCTTCTCATAAGGATACACGATAT-TG
* * * *
1213 ATGCTTTGGTTTCGT-AG-AAGGATTTC-TGTCACCAATTTTTGTAAAGTGTAGGGTCGTGCCTC
129 ATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
* * *
1275 AAA-GAGAC-AACGAAGGATGCTAGTCATGACCTTCATTCTTTTTGTGATTATGGACTATAAACA
194 AAATGAGACAAACG-AGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACA
* * * *
1338 CTTATCTCCCTC-CTAGCATAAACGATA-TCACGA-TTTCTTTTGC--GGAAATATTTTCTTTGC
258 C--AT-TCTCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * **
1398 CCATTTTCCTTAAGATCAAAATTCACCC-TAAGTATGACAAGCTTCGATTAACGTAAGAGGCTCC
320 CCATTTTCCTTAATATCAAAATTCACCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCC
*
1462 A-GCTTTTCGAGATTGGGAGCT-AGAACAC-ATTCCTTCATAAGGATACATGACATTGATGGCTT
385 ATGCTTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATACATGACATTGAT-GCTT
1524 TGGTGTCGCAAGAAAATGTTTTCT
449 TGGTGTCGCAAGAAAATGTTTTCT
*
1548 TTCCACCGTTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTCTCATGCT
1 TTCCACCG-TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCT
* *
1613 AAT-CCC-TTCTTTTCATGACTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATATTA
65 AATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGGATACACGATATTG
* *
1676 ATGCTTTGGTTACGTAAGAAA-CCTTTC-TGTCACCAATTTTTTGTAAAG-CTAAAGTTCGTGCC
129 ATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAA-TTTTTGTAAAGTCT-AAGTTCGTGCC
* * *
1738 GCAAATGAAACAAACGAGGATTC--GTCA-GGTCTTCAGTTCTTTTTGTGATTAGGGACTATAAA
192 TCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCA-TTCTTTTTGTGATTAGGGACTATAAA
* * * *
1800 CACATTCCCCTCATTAGGATAAACGATATTGATGAGTTTCTTTTGCATGGAAATCTTTTCTTTGC
256 CACATT-CTCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTG-
* * * * * *
1865 CCCA-GTTCCTTAATATCGAAATTCAGCCATAATTATGACATGCTTCGATTCCACACGTAAGAAA
319 CCCATTTTCCTTAATATCAAAATTCACCCATAATTATGACAAGCTTCGATT---CTCGTAAG-AG
**
1929 GCTCCACACTTTTCGAGATTGGGAGCTAAGAAC-CAATCCCTTCA-AAGGATACATGACATTGAT
380 GCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATACATGACATTGAT
*
1992 ACTTTGGTGTCGCAAG-AAATG-TTTCT
445 GCTTTGGTGTCGCAAGAAAATGTTTTCT
* *
2018 TTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTGTTAAATAAGACAAAC-AGAATTGTCTTGCT-
1 TTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTA
* * *
2081 ATCCCCATTATTTTCGTGATTA-GCACCATAAACTTGTCTTCTTATAAGGATACACGAT-TATGA
66 ATCCCCATTCTTTTCATGATTAGGCACCATAAACTTGTCTTCTCATAAGGATACACGATAT-TGA
* *
2144 -GCTTTGGTTTCGTAAG-AACGCTTTCTTGTCACC-ATTTTTGTAACG-CTAAGTTCGTGGCCTC
130 TGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGT-GCCTC
* *
2205 AAATGAGACAAATGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGGAC-ATAAACAC
194 AAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACAC
2269 ATTCTCTCATTAGGATAAACGAT-TTCACGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCTT
259 ATTCTCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC--
* * * *
2332 TTTTTCCTTAATATCAAAATTCAGCCCACAATTATTG-CAAGC-TCAATTGTCGTAAAGAGGCTC
322 ATTTTCCTTAATATCAAAATTCA-CCCATAATTA-TGACAAGCTTCGATTCTCGT-AAGAGGCTC
* * * *
2395 CATTCTTTTCGAGATTGGGAGCTAGGAACACATTCCCTTCATAAGGGTACATGACATTGATGCTT
384 CATGCTTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATACATGACATTGATGCTT
2460 TGGTGTCGCAAGAAAA-GTTTTCT
449 TGGTGTCGCAAGAAAATGTTTTCT
* * * *
2483 TTCAACCGTTTTTTATAGAAGTAAAGTTTGTCTCTT-AATAAGAC-AACAAGAATTGTTATGCTT
1 TTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTA
* * *
2546 ATCCCTATTCTTTTCAGGA-TAGGCACCATAAACCTTGTCTTCTCATAAGGATAACACGATACTG
66 ATCCCCATTCTTTTCATGATTAGGCACCATAAA-CTTGTCTTCTCATAAGGAT-ACACGATATTG
* * *
2610 ATTCGTTGGTTTCGTAAGAAAGGTTTTTCTTGTCACCAATTTTTTGTAAAGTCTAAGTTCGTGCC
129 ATGCTTTGGTTTCGTAAGAAAGG-CTTTCTTGTCACCAA-TTTTTGTAAAGTCTAAGTTCGTGCC
* *
2675 TC-ATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAAC
192 TCAAATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAAC
*
2739 ACATTCTCCTCATTAGGATAAACGATATGCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
257 ACATTCT-CTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTG-C
2804 CCATTTTCCTT-ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTC
320 CCATTTTCCTTAATATCAAAATTCA-CCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTC
*
2868 CATGC-TTTCGAGATTGGGAGCTAAGAACGC-ATGCCCTTCATAAGGATAC-TGACATT-ATGCT
384 CATGCTTTTCGAGATTGGGAGCTAAGAACACAAT-CCCTTCATAAGGATACATGACATTGATGCT
2929 TT-GTGTCGCAAGAAAATGTTTTCT
448 TTGGTGTCGCAAGAAAATGTTTTCT
*
2953 TACCACCG-TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTA
1 TTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTA
* * * *
3017 AGCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTC--CTCAT-AGG-TACATGATATTGA
66 ATCCCCATTCTTTTCATGATTAGGCACCATAAAC-TTGTCTTCTCATAAGGATACACGATATTGA
*
3078 TTCTTTGGTTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTG-C-C
130 TGCTTTGG-TTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTC
*
3141 AAATTGAGGC-AACGAGGATTCTAGTCATGATCTT
194 AAA-TGAGACAAACGAGGATTCTAGTCATGATCTT
3175 TTGCATGGAA
Statistics
Matches: 1854, Mismatches: 145, Indels: 189
0.85 0.07 0.09
Matches are distributed among these distances:
461 25 0.01
462 113 0.06
463 133 0.07
464 168 0.09
465 209 0.11
466 115 0.06
467 157 0.08
468 88 0.05
469 109 0.06
470 74 0.04
471 123 0.07
472 172 0.09
473 124 0.07
474 102 0.06
475 42 0.02
476 26 0.01
477 49 0.03
478 25 0.01
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (472 bp):
TTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTA
ATCCCCATTCTTTTCATGATTAGGCACCATAAACTTGTCTTCTCATAAGGATACACGATATTGAT
GCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAA
ATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACAT
TCTCTCATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCATTT
TCCTTAATATCAAAATTCACCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTT
TTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTC
GCAAGAAAATGTTTTCT
Found at i:2801 original size:938 final size:944
Alignment explanation
Indices: 4--3170 Score: 4007
Period size: 938 Copynumber: 3.3 Consensus size: 944
1 ATG
* *
4 CTCGT-AGAGGCTCCATTCTTTTC-AGATTGGGAGCTAAGAACACCATCCC-TCATAA-G-TACA
1 CTCGTAAGAGGCTCCATACTTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATACA
* * **
64 TTACATTGATGCTTTGGGGTCGCAAG-AAATGTTTTTCTTTCTCCACCGTTTTTTTTAGAAGTAA
66 TGACATTGATGCTTTGGTGTCGCAAGAAAATG-TTTTC-TT-TCCACCGTTTTTGATAGAAGTAA
128 AGTTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCTTCCATTC-TTTCATGA-T
128 AG-TTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCC--CCATTCTTTTCATGATT
* * *
191 AGGCACCATAAACCTGTCTTCTGTCTATAAGAAATACACAACGATTATTATGCTTTGGTTTCGTA
190 AGGCACCATAAACTTGTCTTC--TC-ATAAG-GAT--AC-ACGATTATGATGCTTTGGTTTCGTA
* *
256 GGAAAGGCTTTCT-TCAACAATTTTTGTAAAAGTCTAAG-TCGTGGCCTCAAATGAGACAAACAG
248 AGAAAGGCTTTCTGTCACCAATTTTTGT-AAAGTCTAAGTTCGT-GCCTCAAATGAGAC-AAC-G
* * *
319 AGAATTCTAGTCATGACCTTCATTCTGTTTGTGACTAGGGACGATAAAACACATTCTCATCATTA
309 AGGATTCTAGTCATGACCTTCATTCTTTTTGTGATTAGGGACGAT-AAACACATTCTC-TCATTA
*
384 GGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTGCCCCATTTTCCTTACTAA
372 GGATAAACGAT-TTCACGATTTTCTTTTGCATGGAAATCTTTTCTT-TCCCATTTTCCTTA--AA
* * *
449 AGCAAAATTCATCCCATAATTAGGCAAGCATCGATTCTCGTAAGAGGCT-CATTCTTTTCGAGAT
433 ATCAAAATTCA-CCCATAATTATGCAAGCATCGATTATCGTAAGAGGCTCCATTCTTTTCGAGAT
* *
513 TGGGAGATAAGAACACATTCCTTCATAAGGATACACATGACAATTGATGCTTTGGGGGGTCCGCA
497 TGGGAGCT-AGAACACATTCCTTCATAAGGAT--ACATGAC-ATTGATGCTTT--GGTGT-CGCA
* *
578 AGAAAATGTTTTCTTCTTCTACCATTCTTTTCCATTCCAACGTTTTTTAAAGTAAAG-TTGTCCT
555 AGAAAATGTTTTC-T-TTCAACCGTT-TTTT-CA-T---A-G-------AAGTAAAGTTTGT-CT
* * *
642 CTTAAATAAGACAAACAAGAATTGTCATGCTAACCCCATTCTTTTCATGATTAGGCACCATAAAC
603 CTTAAATAAGACAAACAAGAATTGTCATGCTTATCCCATTCTTTTCATGACTAGGCACCATAAAC
* * * *
707 CTTGTCTTCTCATAAGAATAACACGATTTTGATGCTTTGGTTTCGTAGGAAAGGCGTTCTTGTCA
668 CTTGTCTTCTCATAAGGATAACACGATATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCA
* *
772 -CAA--TTTTGTAAAGTCTAAGTTTGTGCCTCAAATGAAGACAAACGAGGATTCTAGTCATGACC
733 CCAATTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG-AGACAAACGAGGATTCTAGTCATGATC
* * * *
834 TTCATTCTTTTTGTGACTAGGGACTATAAA-ACATTCTCATCATTAGGAT-AATGATATTCAACG
797 TTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATGC-ACG
897 ATTTTCTTTTGCATGG-AATCTTTTCTTTGCCCCATTTTCCTTAATAATCAAAATTCATCCCATA
861 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAAT-ATCAAAATTCATCCCATA
* * *
961 ATTAAGGCAAGCATCGATTC
925 ATTATGACAAGCTTCGATTC
* *
981 CTCGTAAGAGGCTCCATTCTTTTTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATAC
1 CTCGTAAGAGGCTCCATAC-TTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATAC
* *
1046 ATGACACATGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCAACCGTTTTT-ATAGAAGGAA
65 ATGACA-TTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCC-ACCGTTTTTGATAGAAGTAA
* *
1110 AGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTTTCACGATTAGG
128 AGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGG
*
1175 C-CCATAAACTTGTCTTCTCATAAGGATACACGATTATGATGCTTTGGTTTCGT-AG-AAGGATT
193 CACCATAAACTTGTCTTCTCATAAGGATACACGATTATGATGCTTTGGTTTCGTAAGAAAGGCTT
* * * *
1237 TCTGTCACCAATTTTTGTAAAGTGTAGGGTCGTGCCTCAAA-GAGACAACGAAGGATGCTAGTCA
258 TCTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAACG-AGGATTCTAGTCA
* * * * * *
1301 TGACCTTCATTCTTTTTGTGATTATGGACTATAAACACTTATCTCCCTC-CTAGCATAAACGATA
322 TGACCTTCATTCTTTTTGTGATTAGGGACGATAAACAC--AT-TCTCTCATTAGGATAAACGATT
* *
1365 TCACGA-TTTCTTTTGC--GGAAATATTTTCTTTGCCCATTTTCCTTAAGATCAAAATTCACCC-
384 TCACGATTTTCTTTTGCATGGAAATCTTTTCTTT-CCCATTTTCCTTAAAATCAAAATTCACCCA
* * * *
1426 TAAGTATGACAAGCTTCGATTAACGTAAGAGGCTCCA-GCTTTTCGAGATTGGGAGCTAGAACAC
448 TAATTATG-CAAGCATCGATTATCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAGAACAC
*
1490 ATTCCTTCATAAGGATACATGACATTGATGGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC
512 ATTCCTTCATAAGGATACATGACATTGAT-GCTTTGGTGTCGCAAGAAAATGTTTTCTTTCAACC
* * *
1555 GTTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTCTCATGCTAATCCC-
576 GTTTTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTTATCCCA
* *
1619 TTCTTTTCATGACTAGGCACCATAAACTTTGTCTTCTCATAAGGAT-ACACGATATTAATGCTTT
641 TTCTTTTCATGACTAGGCACCATAAACCTTGTCTTCTCATAAGGATAACACGATATTGATGCTTT
* * *
1683 GGTTACGTAAGAAA-CCTTTC-TGTCACCAATTTTTTGTAAAG-CTAAAGTTCGTGCCGCAAATG
706 GGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTTGTAAAGTCT-AAGTTCGTGCCTCAAATG
* *
1745 AAACAAACGAGGATTC--GTCA-GGTCTTCAGTTCTTTTTGTGATTAGGGACTATAAACACATTC
770 AGACAAACGAGGATTCTAGTCATGATCTTCA-TTCTTTTTGTGATTAGGGACTATAAACACATTC
* * * *
1807 CCCTCATTAGGATAAACGATATTG-ATGAGTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCA-G
834 TCCTCATTAGGATAAACGATA-TGCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATT
* * *
1870 TTCCTTAATATCGAAATTCA-GCCATAATTATGACATGCTTCGATTCC
898 TTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATT-C
* * *
1917 ACACGTAAGAAAGCTCCACACTTTTCGAGATTGGGAGCTAAGAAC-CAATCCCTTCA-AAGGATA
1 -CTCGTAAG-AGGCTCCATACTTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATA
*
1980 CATGACATTGATACTTTGGTGTCGCAAG-AAATG-TTTCTTTCCACCGTTTTTGATAGAAGTAAA
64 CATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAA
* * * *
2043 GTTTGTCTGTTAAATAAGACAAAC-AGAATTGTCTTGCT-ATCCCCATTATTTTCGTGATTA-GC
129 GTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGC
* *
2105 ACCATAAACTTGTCTTCTTATAAGGATACACGATTATGA-GCTTTGGTTTCGTAAG-AACGCTTT
194 ACCATAAACTTGTCTTCTCATAAGGATACACGATTATGATGCTTTGGTTTCGTAAGAAAGGCTTT
* * *
2168 CTTGTCACC-ATTTTTGTAACG-CTAAGTTCGTGGCCTCAAATGAGACAAATGAGGATTCTAGTA
259 C-TGTCACCAATTTTTGTAAAGTCTAAGTTCGT-GCCTCAAATGAGAC-AACGAGGATTCTAGTC
*
2231 ATGATCTTCATTCTTTTTGTGATTAGGGAC-ATAAACACATTCTCTCATTAGGATAAACGATTTC
321 ATGACCTTCATTCTTTTTGTGATTAGGGACGATAAACACATTCTCTCATTAGGATAAACGATTTC
* *
2295 ACGATTTTCTTTTGCATGGAAATCTTTTCTTTCCCTTTTTTTCCTTAATATCAAAATTCAGCCCA
386 ACGATTTTCTTTTGCATGGAAATCTTTTCTTTCCC--ATTTTCCTTAAAATCAAAATTCA-CCCA
* * *
2360 CAATTATTGCAAGC-TCAATTGTCGTAAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAGGAAC
448 TAATTA-TGCAAGCATCGATTATCGT-AAGAGGCTCCATTCTTTTCGAGATTGGGAGCTA-GAAC
*
2424 ACATTCCCTTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAA-GTTTTCTTTCAA
510 ACATT-CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCAA
*
2488 CCGTTTTTT-ATAGAAGTAAAGTTTGTCTCTT-AATAAGAC-AACAAGAATTGTTATGCTTATCC
574 CCGTTTTTTCATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTTATCC
* * *
2550 CTATTCTTTTCAGGA-TAGGCACCATAAACCTTGTCTTCTCATAAGGATAACACGATACTGATTC
639 C-ATTCTTTTCATGACTAGGCACCATAAACCTTGTCTTCTCATAAGGATAACACGATATTGATGC
* *
2614 GTTGGTTTCGTAAGAAAGGTTTTTCTTGTCACCAATTTTTTGTAAAGTCTAAGTTCGTGCCTC-A
703 TTTGGTTTCGTAAGAAAGG-CTTTCTTGTCACCAATTTTTTGTAAAGTCTAAGTTCGTGCCTCAA
* *
2678 TTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACAT
767 ATGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACAT
2743 TCTCCTCATTAGGATAAACGATATGCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCAT
832 TCTCCTCATTAGGATAAACGATATGCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCAT
2808 TTTCCTT-ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATT-
897 TTTCCTTAATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTC
* *
2854 CTCGTAAGAGGCTCCATGC-TTTCGAGATTGGGAGCTAAGAACGC-ATGCCCTTCATAAGGATAC
1 CTCGTAAGAGGCTCCATACTTTTCGAGATTGGGAGCTAAGAACACAAT-CCCTTCATAAGGATAC
*
2917 -TGACATT-ATGCTTT-GTGTCGCAAGAAAATGTTTTCTTACCACCG-TTTTGATAGAAGTAAAG
65 ATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAG
* * *
2978 TTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAAGCCCTATTCTTTTCAAGATTAGGCA
130 TTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCA
* *
3043 CCATAAACTTTGTC--CTCAT-AGG-TACATGA-TATTGATTCTTTGGTTTTCGTAAGAAAGGCT
195 CCATAAAC-TTGTCTTCTCATAAGGATACACGATTA-TGATGCTTTGG-TTTCGTAAGAAAGGCT
*
3103 TTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTG-C-CAAATTGAGGCAACGAGGATTCTAGT
257 TTC-TGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA-TGAGACAACGAGGATTCTAGT
3166 CATGA
320 CATGA
3171 TCTTTTGCAT
Statistics
Matches: 1949, Mismatches: 158, Indels: 207
0.84 0.07 0.09
Matches are distributed among these distances:
927 5 0.00
928 20 0.01
929 32 0.02
930 94 0.05
931 86 0.04
932 87 0.04
933 68 0.03
934 183 0.09
935 139 0.07
936 173 0.09
937 174 0.09
938 200 0.10
939 116 0.06
940 45 0.02
941 4 0.00
947 1 0.00
948 1 0.00
951 1 0.00
952 1 0.00
953 4 0.00
954 8 0.00
955 1 0.00
956 17 0.01
957 4 0.00
958 6 0.00
959 12 0.01
961 29 0.01
962 43 0.02
963 13 0.01
965 26 0.01
967 10 0.01
968 13 0.01
969 54 0.03
970 9 0.00
971 28 0.01
972 18 0.01
973 23 0.01
974 2 0.00
976 2 0.00
977 10 0.01
978 15 0.01
979 10 0.01
980 46 0.02
981 54 0.03
982 14 0.01
983 19 0.01
984 24 0.01
985 5 0.00
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (944 bp):
CTCGTAAGAGGCTCCATACTTTTCGAGATTGGGAGCTAAGAACACAATCCCTTCATAAGGATACA
TGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGT
TTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCAC
CATAAACTTGTCTTCTCATAAGGATACACGATTATGATGCTTTGGTTTCGTAAGAAAGGCTTTCT
GTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAACGAGGATTCTAGTCATGAC
CTTCATTCTTTTTGTGATTAGGGACGATAAACACATTCTCTCATTAGGATAAACGATTTCACGAT
TTTCTTTTGCATGGAAATCTTTTCTTTCCCATTTTCCTTAAAATCAAAATTCACCCATAATTATG
CAAGCATCGATTATCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAGAACACATTCCTTCA
TAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCAACCGTTTTTTCAT
AGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTTATCCCATTCTTTTCAT
GACTAGGCACCATAAACCTTGTCTTCTCATAAGGATAACACGATATTGATGCTTTGGTTTCGTAA
GAAAGGCTTTCTTGTCACCAATTTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACGAG
GATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGA
TAAACGATATGCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCA
AAATTCATCCCATAATTATGACAAGCTTCGATTC
Found at i:5506 original size:158 final size:156
Alignment explanation
Indices: 3417--10275 Score: 1599
Period size: 158 Copynumber: 43.4 Consensus size: 156
3407 GCTAATCCCT
* * * ** * * *
3417 ATTCTTTTCATGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGATACACAATATTGATTC-T
1 ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGCTT
* * * ** **
3480 TGGTTTCATAAGAAAGGCTTTCTTGTCATTAATTTTTGTAAAGTGTAAGTTCGTGCCTCAAATGA
65 TGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATGA
* * * * *
3545 AACGAACGAGGATTCTGGTAATGATCTTC
128 GACAAACGAGGATTCTAGTCATGATCTCC
* * * * * * *
3574 ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGATA-ACGATATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * * * * * * * *
3638 TCTTTTGCATGGAAATC-TTTTCTTTGC-CCCATTTTCCT-TAATA-ACAAAATTCATCC-CATA
66 GGTTTCGTA-AGAAA-CGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCA-A
* * *** * * *
3698 ATTATGACAAGCTTTCGATTCTCGT-AAGAGGCTCC
124 ATGA-GACAAAC-GAGGATTCTAGTCATGA-TCTCC
* * * * *
3733 ATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCTTAAGGATACACGACATTGACGC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGATGC
* * * * * * *
3795 TTTGGTGTCG-CAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAGT-AAAGTTTGTCTCTTA
63 TTTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTG-TA-AAGTCAAAGTTCGTC-CTCA
* * * *
3857 AATAAGACAAAC-AAGAAT-T-GTCATGCTAATCCCC
123 AATGAGACAAACGAGGATTCTAGTCATG---ATCTCC
* * * *
3891 ATTCTTTTTCGTGATTAGGCACCAT-AA-ACTTGTCTTCTCATAAGGATACAACGATTATTGATG
1 ATTC-TTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATAC-ACGA-TATTGATG
* *
3954 CTTTGGTTTCGTAAGAAACGCTTTT-TGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAAA
62 CTTTGGTTTCGTAAGAAACG-TTTTCTGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAA
* * *
4018 TGAGACAAATGAGGATTCTAGTAATGATCTTC
125 TGAGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * *
4050 ATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * * * * * * * **
4115 TCTTTTGCATGGAAATC-TTTTCTTTTC-CC-TTTTTTCCATAATA-TCAAA-ATCCACC-CACA
66 GGTTTCGTA-AGAAA-CGTTTTC-TGTCACCAATTTTT--GTAA-AGTCAAAGTTCGTCCTCA-A
* * * * * *
4174 ATTATTG-CAAGC-ATCGATTGTCGTAACA-G-GCTCC
124 ATGA--GACAAACGA-GGATTCTAGT--CATGATCTCC
* ** * * *
4208 ATTCTTTTCGAGATT-GGGAGCTAGGAACACATTC-CCTTCATAAGGGTACATGACATTGATGCT
1 ATTCTTTTCGTGATTAGGGA-CTATAAACACATTCTCC-TCATAAGGATACACGATATTGATGCT
* * * * ** * * *
4271 TTGG-GTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGT-AAAGTTTGTCTCTAAAA
64 TTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTGTA-AAGTCAAAGTTCGTC-CTCAAA
* * * * *
4334 TAAGACAAACAAGAATTGTTA-TGC-TTATC-CC
125 TGAGACAAACGAGGATT-CTAGT-CATGATCTCC
* * * * * * * *
4365 TATTCTTTTCATGATTAGGCACCATAAAC-CTTGTCTTCTCATAAGGATACACGATACTGATTCG
1 -ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGCT
* * *
4429 TTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
64 TTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATG
* * * * *
4494 AGACGAACGAGGATGCTGGTAATGATCTTC
127 AGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * ***
4524 ATTCTTTT-GTGATTAGGCACTATAAAACACATT-TCCTCGTTAGGATAAACGATATTCACAATT
1 ATTCTTTTCGTGATTAGGGACTAT-AAACACATTCTCCTCATAAGGATACACGATATTGATGCTT
** * * * ** * * * *
4587 TTCTTT-GCATGGAAATC-TTTTCTTTGC-CCCCTTTTTCCTTAATA-ACAAAATTCATCC-CAT
65 TGGTTTCGTA-AGAAA-CGTTTTCTGT-CACCAATTTTT--GTAA-AGTCAAAGTTCGTCCTCA-
* * *** * * *
4647 AATTATGACAAGCTTCGATTCGTCGT-AAGAGGCTCC
123 AATGA-GACAAACGAGGATTC-TAGTCATGA-TCTCC
* * * * *
4683 ATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCTTAAGGATACACGACATTGACGC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGATGC
* * * * * * *
4745 TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAGT-AAAGTTGGTCTCTTA
63 TTTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTG-TA-AAGTCAAAGTTCGTC-CTCA
* * * *
4808 AATAAGACAAACAAGAATTGTCT-G-C-TAATC-CC
123 AATGAGACAAACGAGGA-T-TCTAGTCATGATCTCC
* * * * * * * * *
4840 TATTCTTTTCATGATTACGCACCAT-AA-ACTTTTTTCTCATAAGGATACACGATACTGATTCTT
1 -ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTT
* * *
4903 TGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGA
65 TGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATGA
*
4968 GACAAACGAGGATTC-AGTCATGATCTTC
128 GACAAACGAGGATTCTAGTCATGATCTCC
* * * * * *
4996 ATTCTTTTTGTGATTAGGGACTATAAACA-ATTCTCCTCATTAGGATA-ACGAAATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * * * * * * *
5059 TCTTTTGCT-GGAAATC-TTTTCTTTGC-CCCATTTTCCT-TAATA-TCAAAATTCATCC-C-TA
66 GGTTTCG-TAAGAAA-CGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCAAA
* * *** * *
5117 TTATGACAAGCTTCGATTC-ACGT-AAGAGGCTCC
125 TGA-GACAAACGAGGATTCTA-GTCATGA-TCTCC
* * ** ** * *
5150 ATGCTTTTCGAGATT-GGGAGCTAGGAATGCATTC-CCTTCATAAGGATACATGACATTGATGC-
1 ATTCTTTTCGTGATTAGGGA-CTATAAACACATTCTCC-TCATAAGGATACACGATATTGATGCT
* * * * * * *
5212 TTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAAAAGT-AAAGTTTGTCTCTTAA
64 TTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTG-T-AAAGTCAAAGTTCGTC-CTCAA
* * *
5275 ATAAGACAAAC-AAGAAT-T-GTCATGCTAATC-CC
124 ATGAGACAAACGAGGATTCTAGTCATG---ATCTCC
* * * ** *
5307 ATTCTTTTTCGTGATTCGGCACCATAAAC-TTTGTCTTCTCATAAGGATACACGATTATTGATGC
1 ATTC-TTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGC
* * *
5371 -TTGGTTTCGTAAGAAACGCTTTCTGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAAATG
63 TTTGGTTTCGTAAGAAACGTTTTCTGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATG
*
5435 AGACAAACGAGGATTCTAGTCATGATCTTC
127 AGACAAACGAGGATTCTAGTCATGATCTCC
* * * * *
5465 ATTCTTTTTTGTGATTAGAGACTATAAACACATTCTCCTCATTATTAGGATAAACGATATTCACG
1 ATTC-TTTTCGTGATTAGGGACTATAAACACATTCTCCTCA-TA--AGGATACACGATATTGATG
* ** * * * * * * * *
5530 ATTTTCTTTTGCATGGAAATC-TTTTCTTTTC-CC-TTTTTTCCTTAATA-TCAAAATTCATCC-
62 CTTTGGTTTCGTA-AGAAA-CGTTTTC-TGTCACCAATTTTT--GTAA-AGTCAAAGTTCGTCCT
* * * * * * *
5590 CATAATTATTG-CAAGC-ATCGATTGTCGT-AAGAGGCTCC
121 CA-AATGA--GACAAACGA-GGATTCTAGTCATGA-TCTCC
* * ** * * * *
5628 ATTCTTTTCGAGATT-GCGAGCTAGGAACACATTC-CCTTCATAAGGGTACATGACATTGATGCA
1 ATTCTTTTCGTGATTAGGGA-CTATAAACACATTCTCC-TCATAAGGATACACGATATTGATGCT
* * * * ** * *
5691 CTGGTGTCGCAAGAAAACGTTTTCTTTCCACCGTTTTTTATAGAAGT-AAAGTT-GTCTCTTAAA
64 TTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTGTA-AAGTCAAAGTTCGTC-CTCAAA
* * * * *
5754 TAAGACAAACAAGAATTGTTA-TGC-TTATC-CC
125 TGAGACAAACGAGGATT-CTAGT-CATGATCTCC
* * * * * * * *
5785 TATTCTTTTCATGATTAGGCACCATAAAC-CTTGTCTTCTCATAAGGATACACGATACTGATTCG
1 -ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGCT
* * *
5849 TTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTG
64 TTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATG
*
5914 AGACAAACGAGGATTCTAGTCATGATCTTC
127 AGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * * *
5944 ATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGAAATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * ** * * * * *
6009 TCTTTTGCTTGGAAACTTTTTCTTTGC-CCCATTTTCCT-TAATA-TCAAAATTCATCC-CATAA
66 GGTTTCG-TAAGAAACGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCA-AA
* * *** * *
6070 TTATGACAAGCTTCGATTC-ACGT-AAGAGGCTCC
125 TGA-GACAAACGAGGATTCTA-GTCATGA-TCTCC
* * * * * *
6103 ATGCTTTTCGAGATT-GGGAGC-AAAGAACGCATTC-CCTTCATAAGGATACATGACATTGATGC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGATGC
* * * * * * *
6165 TTTGGTGTCGCAAGAAAATGTTTTCT-T-TCCACGTTTTTGATAGAAGT-AAAGTTTGTCTCTTA
63 TTTGGTTTCGTAAG-AAACGTTTTCTGTCACCA-ATTTTTG-TA-AAGTCAAAGTTCGTC-CTCA
* * * *
6227 AATAAGACAAAC-AAGAAT-T-GTCATGCTAATCCCC
123 AATGAGACAAACGAGGATTCTAGTCATG---ATCTCC
* * ** *
6261 ATTCTTTTTCGTGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGATACACGATTATTGATGC
1 ATTC-TTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGC
* * * *
6325 TTTGGTTTCGTAAGAAACGCTTTCTTGTCACCAA-TTTTGTAACGTCTAAGTTCGTGCCTCAATT
63 TTTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
*
6389 GAGACAAACGAGGATTCTAGTCATGATCTTC
126 GAGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * ***
6420 ATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGAAATTCACAATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * ** * * * *
6485 TCTTTTGCTTGGAAATC-TTTTCTTTGC-CCCATTTTCCT-TAATA-TCAAAATTCTTCC-CATA
66 GGTTTCG-TAAGAAA-CGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCA-A
* * *** * *
6545 ATTATGACAAGCTTCGATTC-ACGT-AAGAGGCTCC
124 ATGA-GACAAACGAGGATTCTA-GTCATGA-TCTCC
* * * * * *
6579 ATGCTTTTCGAGATT-GGGAGC-AAAGAACGCATTC-CCTTCATAAGGATACATGACATTGATGC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGATGC
* * * * ** * *
6641 TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCTTGTTTTTGATAGAAGT-AAAGTTTGTCTCTT
63 TTTGGTTTCGTAAG-AAACGTTTTCTGT-CACC-AATTTTTG-TA-AAGTCAAAGTTCGTC-CTC
* * * * * *
6705 AAATAAGACAAACAAGAATTGTCA-TCCTAATC-CC
122 AAATGAGACAAACGAGGATTCT-AGTCATGATCTCC
* * * * * ** *
6739 TATTCTATTCATGATTACGCACCATAAAC-TTTGTCTTCTCATAAGGATACACGATTATTGATGC
1 -ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGC
* * *
6803 TTTGGTTTCGTAAGAAACGCTTTCTTGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAAAT
63 TTTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
* *
6868 GAGACAAACGAGGATTCTAGTCATGACCTTC
126 GAGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * * * *
6899 ATTCTTTTTGTGATTAGGGACTATAAACACATTGTCCTCATTAGAATAAACGATATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATG-CTT
** * ** * * * * * * * *
6964 TCTTTTGCATGGGAATCTTTTGTTTTTC-CC-TTTTTTCCTTAATA-TCAAAATTCATCC-CATA
65 TGGTTT-CGTAAGAAACGTTT-TCTGTCACCAATTTTT--GTAA-AGTCAAAGTTCGTCCTCA-A
* * * * *
7025 ACT-ATTG-CAAGC-ATCGATTGGTA-ACA-G-GCTCC
124 A-TGA--GACAAACGA-GGATT-CTAGTCATGATCTCC
* ** * * * *
7057 ATTCTTTTCGAGATT-GGGAGCTAGGAACACGTTC-CC-CATAAGGGTACATGACATTGATGCTT
1 ATTCTTTTCGTGATTAGGGA-CTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTT
* * * * ** * * *
7119 TGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATAGAAGT-AAAGTTTGTCTCTAAAAT
65 TGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTGTA-AAGTCAAAGTTCGTC-CTCAAAT
* * * * *
7183 AAGACAAACAAGAATTGTTA-TGC-TTATC-CC
126 GAGACAAACGAGGATT-CTAGT-CATGATCTCC
* * * * * *
7213 TATTCTTTTCATGATTAGGCACCATAAAC-CTTGTCTTCTCATAAGGATACACGATATTGATTCT
1 -ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGCT
* ** *
7277 TTGGTTTCTTAAGAAA-GGCTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
64 TTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATG
* * * *
7341 AGACAAACGAGGATTTTGGTAATGATCTTC
127 AGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * *
7371 ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCGTTAGGATAAACGATATTCA--CTTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * * * * * * * *
7434 TCTTTTGCATGGAAATC-TTTTCTTTGC-CCCATTTTCCT-TAATA-ACAAAATTCATCC-CATA
66 GGTTTCGTA-AGAAA-CGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCA-A
* * *** * * *
7494 ATTATGACAAGCTTCGATTCTCGT-AGGAGGCTCC
124 ATGA-GACAAACGAGGATTCTAGTCATGA-TCTCC
* * * * **
7528 ATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCTTAAGGATACACGACATTGACAC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGATGC
* * * * * ** * * *
7590 TTTGGTGTCGCAAGAAA-ATATTTTTTTTTCCATCGTTTTTGATAGAAG-CAAAGTTTGTCTCTT
63 TTTGGTTTCGTAAGAAACGT-TTTCTGTCACCA--ATTTTTG-TA-AAGTCAAAGTTCGTC-CTC
* * * * *
7653 AAATAAAACAAAC-AAGAAT-T-GTCATGCTATTCCCC
122 AAATGAGACAAACGAGGATTCTAGTCATG--A-TCTCC
* * * ** * *
7688 ATTCTTTTCTTGATTAGGCG-CCATAAGC-TTTGTCTTCTCATAAGTATACACGATTATTGATGC
1 ATTCTTTTCGTGATTAGG-GACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGC
* * * * *
7751 TTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATTTTTTGTAAAGTCTAAGTTCGTGCCTCAAT
63 TTTGGTTTCGTAAGAAACGTTTTC-TGTCACCAA-TTTTTGTAAAGTCAAAGTTCGT-CCTCAAA
*
7816 TGAGACAAACGAGGATTCTAGTCATGATCTTC
125 TGAGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * * *
7848 ATTCTTTTTGTGATTAGGGACTATAAA-ACATTCTCCTCATTAGGATAAACGAAATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** ** * * * *
7912 TCTTT-GCTTGGAAATC-TTTTCTTTGC-CCCATTTTCCT-TAATA-TCAAAATTCATCC-CATA
66 GGTTTCG-TAAGAAA-CGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCA-A
* * *** * *
7971 ATTATGACAAGCTTCGATTC-ACGT-AAGAGGCTCC
124 ATGA-GACAAACGAGGATTCTA-GTCATGA-TCTCC
* * * * * * *
8005 ATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CATTCATAAGGGTA-ATGACATTGACGC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTC-CTCATAAGGATACACGATATTGATGC
* * * * * * * *
8066 TTTGGTGTCGCAAGAAAATGTTTTCTTTCCATC-GTTTTTGATAGAAG-CAAAGTTTGTCTCTTA
63 TTTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTG-TA-AAGTCAAAGTTCGTC-CTCA
* * * * *
8129 AATAAAACAAAC-AAGAAT-T-GTCATGCTATTCCCC
123 AATGAGACAAACGAGGATTCTAGTCATG--A-TCTCC
* * * ** * *
8163 ATTC-TTTCTTGATTAGGCG-CCATAAGC-TTTGTCTTCTCATAAGTATACACGATTATTGATGC
1 ATTCTTTTCGTGATTAGG-GACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGC
* * * * *
8225 TTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATT
63 TTTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
*
8290 GAGACAAACGAGGATTCTAGTCATGATCTTC
126 GAGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * * * *
8321 ATTCTTTTTGTGATTAGGGACTAT-AA-ATATTCTCCTCATTAGGATAAACGAAATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * ** * * * *
8384 TCTTTTGCTTGGAAATC-TTTTCTTTGC-CCCATTTTCCT-TAATA-TCAAAATTCATCC-CATA
66 GGTTTCG-TAAGAAA-CGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCA-A
* * *** * *
8444 ATTATGACAAGCTTCGATTC-ACGT-AAGAGGCTCC
124 ATGA-GACAAACGAGGATTCTA-GTCATGA-TCTCC
* * * ** * *
8478 ATGCTTTTCGAGATT-GGGAGC-AAAGAATGCATTC-CCTTCATAAGGATACATGACATTGATGC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGATGC
* * * * * * * *
8540 TTTGGTGTCGCAAAAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAGT-AAAGTTTGTCTCTTA
63 TTTGGTTTCG-TAAGAAACGTTTTCTGT-CACCAATTTTTG-TA-AAGTCAAAGTTCGTC-CTCA
* * * *
8603 AATAAGACAAAC-AAGAAT-T-GTCATGCTAATCCCC
123 AATGAGACAAACGAGGATTCTAGTCATG---ATCTCC
* * ** * *
8637 ATTCTTTTTCGTGATTAGGCACCATAAAC-TTTGTCTTCTCATAAGGAT-CACGATTGTTGATGC
1 ATTC-TTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGC
* * * *
8700 TTTGGTTTCGTAAGAAACGCTTTCTTGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAATT
63 TTTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
*
8765 GAGACAAACGAGGATTCTAGTCATGATCTTC
126 GAGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * *
8796 ATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * * * * * * * * *
8861 TCTTTTGCATGGAAATC-TTTTCTTTGC-CCCATTTCCT-TAATA-ACAAAATTCATCC-CATAA
66 GGTTTCGTA-AGAAA-CGTTTTCTGT-CACCAATTT-TTGTAA-AGTCAAAGTTCGTCCTCA-AA
* * *** * * *
8921 TTATGACAAGCTTCGATTCTCGT-AAGAGGCTCC
125 TGA-GACAAACGAGGATTCTAGTCATGA-TCTCC
* * * * *
8954 ATGCTTTTCGAGATT-GGGAGCTA-AGAACACATTC-CCTTCTTAAGGATACACGACATTGACGC
1 ATTCTTTTCGTGATTAGGGA-CTATA-AACACATTCTCC-TCATAAGGATACACGATATTGATGC
* * * * * * *
9016 TTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTGATAGAAGT-AAAGTTTGTCTCTTA
63 TTTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTG-TA-AAGTCAAAGTTCGTC-CTCA
* * *
9079 AATAAGACAAAC-AAGAAT-T-GTCATGCTAATC-CC
123 AATGAGACAAACGAGGATTCTAGTCATG---ATCTCC
* * * * ** * * *
9112 TATTCTTTTCATGATTACGCACCATAAAC-TTTGTCTTCTCATAAGGATACACGATACTGATTCT
1 -ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGATATTGATGCT
* * * *
9176 TTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTG
64 TTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATG
*
9241 AGACAAACGAGGATTCTAGTCATGATCTTC
127 AGACAAACGAGGATTCTAGTCATGATCTCC
* * * * * * *
9271 ATTCTTTTTGTGATTAGGGACTAT-AACACATTCTCCTCATTAGGATAAACGAAATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATG-CTT
** * * * * * *
9335 TCTTTTGCCT-GGAAATC-TTTTCTTTGC-CCCATTTTCCT-TAATA-TCAAAATTCAT-C-CAT
65 TGGTTT-CGTAAGAAA-CGTTTTCTGT-CACCAATTTT--TGTAA-AGTCAAAGTTCGTCCTCA-
* * *** * *
9393 AATTATGACAAGCTTCGATTC-ACGT-AAGAGGCTCC
123 AATGA-GACAAACGAGGATTCTA-GTCATGA-TCTCC
* * ** ** * * *
9428 ATGCTTTTCGAGATT-GGGAGCTAGGAATGCATTC-CTTCATAAGGATACATGACATTGATGCTT
1 ATTCTTTTCGTGATTAGGGA-CTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTT
* * * * * * * *
9491 TGGTGTCGCAAGAAAATGTTTTCTTTCCACC-GTTTTTATAGAAGT-AAAGTTTGTCTCTTAAAT
65 TGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTGTA-AAGTCAAAGTTCGTC-CTCAAAT
* * * * * *
9554 AAGACAAACAAGAATTGTCTTG-C-TAATCCCC
126 GAGACAAACGAGGA-T-TCTAGTCATGATCTCC
* * * * * *
9585 ATTCTTTTCATGATTAGGCACCATAAAC-CTTGTCTTCTCATAAGAATACACGATTATTGATGCT
1 ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGCT
* * * * * *
9649 TTGGTTTCGTAGGAAAGGCTTTCTTTCAACAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGA
64 TTGGTTTCGTAAGAAACGTTTTCTGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAATGA
* * *
9714 GACAAATGAGGATTCTAGTAATGATCTTC
128 GACAAACGAGGATTCTAGTCATGATCTCC
* * * * * *
9743 ATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
** * * * * * * *
9808 TCTTTTGCATGGAAATC-TTTTCTTTTC-CC--TTTTTCCATAATA-TCAAAATTCATCC-CACA
66 GGTTTCGTA-AGAAA-CGTTTTC-TGTCACCAATTTTT--GTAA-AGTCAAAGTTCGTCCTCA-A
* * * * * * *
9867 ATTATTG-CAAGC-ATCGATTGTCGT-AAGAGGCTCC
124 ATGA--GACAAACGA-GGATTCTAGTCATGA-TCTCC
* ** * * *
9901 ATTCTTTTCGAGATT-GGGAGCTAGGAACACATTC-CCTTCATAAGGGTACATGACATTGATGCT
1 ATTCTTTTCGTGATTAGGGA-CTATAAACACATTCTCC-TCATAAGGATACACGATATTGATGCT
* * * * ** * * * * *
9964 TTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTTTATGGAAGT-AAAGTTTGTCTGTTAAA
64 TTGGTTTCGTAAG-AAACGTTTTCTGT-CACCAATTTTTGT-AAAGTCAAAGTTCGTC-CTCAAA
* * * * *
10028 TAAGACAAACAAGAATTGTCTTG-C-TAATC-CC
125 TGAGACAAACGAGGA-T-TCTAGTCATGATCTCC
* * * * * ** *
10059 TATTCTTTTCATGATTACGCACCATAGAC-TTTGTCTTCTCATAAGGATACACGATTATTGATGC
1 -ATTCTTTTCGTGATTAGGGACTATAAACACAT-TCTCCTCATAAGGATACACGA-TATTGATGC
* * *
10123 TTTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATT
63 TTTGGTTTCGTAAGAAACGTTTTC-TGTCACCAATTTTTGTAAAGTCAAAGTTCGT-CCTCAAAT
*
10188 GAGACAAACGAGGATTCTAGTCATGATCTTC
126 GAGACAAACGAGGATTCTAGTCATGATCTCC
* * * *
10219 ATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAACGATATT
1 ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATT
10276 CACGATTTTC
Statistics
Matches: 4723, Mismatches: 1397, Indels: 1163
0.65 0.19 0.16
Matches are distributed among these distances:
152 2 0.00
153 23 0.00
154 49 0.01
155 174 0.04
156 308 0.07
157 856 0.18
158 1346 0.28
159 1149 0.24
160 439 0.09
161 223 0.05
162 112 0.02
163 41 0.01
164 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (156 bp):
ATTCTTTTCGTGATTAGGGACTATAAACACATTCTCCTCATAAGGATACACGATATTGATGCTTT
GGTTTCGTAAGAAACGTTTTCTGTCACCAATTTTTGTAAAGTCAAAGTTCGTCCTCAAATGAGAC
AAACGAGGATTCTAGTCATGATCTCC
Found at i:6491 original size:476 final size:477
Alignment explanation
Indices: 3171--10645 Score: 11890
Period size: 476 Copynumber: 15.8 Consensus size: 477
3161 CTAGTCATGA
* * * * *
3171 TCTTTTGCATGGAAATCTTTT-TTT--CCCTTTTTTCTTAATTTCAAAATTCCTCCCACAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA-
* * * * *
3233 TTG-CAA-CATT-GATTGTCATAAGAGGCTCCATTCGTTTTCGAGATGGGGA-CTAGGAACACAT
65 -TGACAAGC-TTCGATTCTCGTAAGAGGCTCCATGC-TTTTCGAGATTGGGAGCTAAGAACACAT
* * *
3294 T-CCTTCATAAGGGTATATGACATTGATGCTTTGG-GTTCGCAAGAAAATGATTTCTTTCCACCG
127 TCCCTTCATAAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAATGTTTTCTTTCCACCG
*
3357 TTTTTG---GAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCTTGCTAATCCCTAT
191 TTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTAT
* *
3419 TCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACAC-AATATTGATTC-TTG
256 TCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTG
* ** * * *
3482 GTTTCATAAGAAAGGCTTTCTTGTCATTAATTTTTGTAAAGTGTAAGTTCGTGCCTCAAATGAAA
321 GTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGA
* * * *
3547 CGAACGAGGATTCTGGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCT
386 CAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCT
*
3612 CGTTAGGAT-AACGATATTCACGATTT
451 CATTAGGATAAACGATATTCACGATTT
*
3638 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATAACAAAATTCATCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
3703 GACAAGCTTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
66 GACAAGC-TTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
* * *
3768 CTTCTTAAGGATACACGACATTGACGCTTTGGTGTCGC-AGAAAATGTTTTCTTTCCACCGTTTT
130 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
*
3832 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTC-T
*
3897 TTTCGTGATTAGGCACCATAAAC-TTGTCTTCTCATAAGGATACAACGATTATTGATGCTTTGGT
259 TTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATAC-ACGATTATTGATGCTTTGGT
* * *
3961 TTCGTAAGAAACGCTTT-TTGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAAATGAGACA
323 TTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACA
* *
4025 AATGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCA
388 AACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCA
4090 TTAGGATAAACGATATTCACGATTT
453 TTAGGATAAACGATATTCACGATTT
* ** * * *
4115 TCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCATAATATCAAAATCCA-CCCACAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA-
* * * * *
4179 TG-CAAGCATCGATTGTCGTAACAGGCTCCATTCTTTTCGAGATTGGGAGCTAGGAACACATTCC
65 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
*
4243 CTTCATAAGGGTACATGACATTGATGCTTTGG-GTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
130 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
* * * *
4307 TTATAGAAGTAAAGTTTGTCTCTAAAATAAGACAAACAAGAATTGTTATGCTTATCCCTATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
* * * *
4372 TTCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGGATACACGA-TACTGATTCGTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
* * * *
4436 CGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACGAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
* * * * *
4501 CGAGGATGCTGGTAATGATCTTCATTC-TTTTGTGATTAGGCACTATAAAACACATT-TCCTCGT
390 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT-AAACACATTCTCCTCAT
*
4564 TAGGATAAACGATATTCACAATTT
454 TAGGATAAACGATATTCACGATTT
* *
4588 TC-TTTGCATGGAAATCTTTTCTTTGCCCCCTTTTTCCTTAATAACAAAATTCATCCCATAATTA
1 TCTTTTGCATGGAAATCTTTTCTTTG-CCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
4652 TGACAAGCTTCGATTCGTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTC
65 TGACAAGCTTCGATTC-TCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTC
* * *
4717 CCTTCTTAAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
129 CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
*
4782 TTGATAGAAGTAAAGTTGGTCTCTTAAATAAGACAAACAAGAATTGTC-TGCTAATCCCTATTCT
194 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCT
* * *
4846 TTTCATGATTACGCACCATAAACTTT-T-TTCTCATAAGGATACACGA-TACTGATTCTTTGGTT
259 TTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTT
*
4908 TCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
324 TCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
4973 ACGAGGATTC-AGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACA-ATTCTCCTCAT
389 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCAT
*
5036 TAGGAT-AACGAAATTCACGATTT
454 TAGGATAAACGATATTCACGATTT
5059 TCTTTTGC-TGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCC-T-ATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* * **
5121 GACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAATGCATTCCC
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
5186 TTCATAAGGATACATGACATTGATGC-TTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
*
5250 GATAAAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCC-ATTCTTT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTC-TT
* *
5314 TTCGTGATTCGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGC-TTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
* * *
5378 CGTAAGAAACGCTTTC-TGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAAATGAGACAAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
*
5442 CGAGGATTCTAGTCATGATCTTCATTCTTTTTTGTGATTAGAGACTATAAACACATTCTCCTCAT
390 CGAGGATTCTAGTCATGATCTTCATTC-TTTTTGTGATTAGGGACTATAAACACATTCTCCTC--
5507 TATTAGGATAAACGATATTCACGATTT
452 -ATTAGGATAAACGATATTCACGATTT
* **
5534 TCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA-
* * * * *
5599 TG-CAAGCATCGATTGTCGTAAGAGGCTCCATTCTTTTCGAGATTGCGAGCTAGGAACACATTCC
65 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
* ** *
5663 CTTCATAAGGGTACATGACATTGATGCACTGGTGTCGCAAGAAAACGTTTTCTTTCCACCGTTTT
130 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
* * *
5728 TTATAGAAGTAAAG-TTGTCTCTTAAATAAGACAAACAAGAATTGTTATGCTTATCCCTATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
* * * *
5792 TTCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGGATACACGA-TACTGATTCGTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
*
5856 CGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
5921 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATT
390 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATT
*
5986 AGGATAAACGAAATTCACGATTT
455 AGGATAAACGATATTCACGATTT
*
6009 TCTTTTGCTTGGAAA-CTTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
1 TCTTTTGCATGGAAATC-TTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
* * *
6073 TGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCAAAGAACGCATTCC
65 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
6138 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA-CGTTTT
130 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
*
6202 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTC-T
*
6267 TTTCGTGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTT
259 TTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTT
* *
6332 TCGTAAGAAACGCTTTCTTGTCACCAA-TTTTGTAACGTCTAAGTTCGTGCCTCAATTGAGACAA
324 TCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
6396 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCAT
389 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCAT
* *
6461 TAGGATAAACGAAATTCACAATTT
454 TAGGATAAACGATATTCACGATTT
* *
6485 TCTTTTGCTTGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCTTCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* * *
6550 GACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCAAAGAACGCATTCCC
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
6615 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCTTGTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACC--GTTT
*
6680 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATCCTAATCCCTATTCT
194 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCT
* *
6745 ATTCATGATTACGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTT
259 TTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTT
* * *
6810 TCGTAAGAAACGCTTTCTTGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAAATGAGACAA
324 TCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
* *
6875 ACGAGGATTCTAGTCATGACCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTGTCCTCAT
389 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCAT
*
6940 TAGAATAAACGATATTCACGATTT
454 TAGGATAAACGATATTCACGATTT
* * * ** *
6964 TCTTTTGCATGGGAATCTTTTGTTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAACTA
1 TCTTTTGCATGGAAATCTTTT-CTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
* * * * * *
7029 TTG-CAAGCATCGA-T-TGGTAACAGGCTCCATTCTTTTCGAGATTGGGAGCTAGGAACACGTTC
65 -TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTC
*
7091 CC--CATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
129 CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
* * * *
7154 TTTATAGAAGTAAAGTTTGTCTCTAAAATAAGACAAACAAGAATTGTTATGCTTATCCCTATTCT
194 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCT
* *
7219 TTTCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTT
259 TTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTT
* *
7283 TCTTAAGAAAGGC-TTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
324 TCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
* * * * *
7347 ACGAGGATTTTGGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCGT
389 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCAT
7412 TAGGATAAACGATATTCAC--TTT
454 TAGGATAAACGATATTCACGATTT
*
7434 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATAACAAAATTCATCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
*
7499 GACAAGCTTCGATTCTCGTAGGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
* * ** * * *
7564 TTCTTAAGGATACACGACATTGACACTTTGGTGTCGCAAGAAAATATTTTTTTTTCCATCGTTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAT-GTTTTCTTTCCACCGTTTT
* * * *
7629 TGATAGAAGCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATTGTCATGCTATTCCCCATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
* * * *
7694 TTCTTGATTAGGCGCCATAAGCTTTGTCTTCTCATAAGTATACACGATTATTGATGCTTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
*
7759 CATAAGAAAGGCTTTCTTGTCACCAATTTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
325 CGTAAGAAAGGCTTTCTTGTCACCAA-TTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAA
7824 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAA-ACATTCTCCTCAT
389 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCAT
*
7888 TAGGATAAACGAAATTCACGATTT
454 TAGGATAAACGATATTCACGATTT
*
7912 TC-TTTGCTTGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* *
7976 GACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCA
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
* * *
8041 TTCATAAGGGTA-ATGACATTGACGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
* * * *
8105 GATAGAAGCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATTGTCATGCTATTCCCCATTC-TT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
* * * *
8169 TCTTGATTAGGCGCCATAAGCTTTGTCTTCTCATAAGTATACACGATTATTGATGCTTTGGTTTC
261 TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
*
8234 ATAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAAC
326 GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAAC
*
8299 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT-AA-ATATTCTCCTCATTA
391 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTA
*
8362 GGATAAACGAAATTCACGATTT
456 GGATAAACGATATTCACGATTT
*
8384 TCTTTTGCTTGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* * **
8449 GACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCAAAGAATGCATTCCC
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
*
8514 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAATGTTTTCTTTCCACCGTTTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
*
8579 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCTTT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTC-TT
* *
8644 TTCGTGATTAGGCACCATAAACTTTGTCTTCTCATAAGGAT-CACGATTGTTGATGCTTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
* *
8708 CGTAAGAAACGCTTTCTTGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAATTGAGACAAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
8773 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATT
390 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATT
8838 AGGATAAACGATATTCACGATTT
455 AGGATAAACGATATTCACGATTT
*
8861 TCTTTTGCATGGAAATCTTTTCTTTGCCCCA-TTTCCTTAATAACAAAATTCATCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
8925 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
* * *
8990 TTCTTAAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
9055 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
* * *
9120 TCATGATTACGCACCATAAACTTTGTCTTCTCATAAGGATACACGA-TACTGATTCTTTGGTTTC
261 TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
* *
9184 GTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGAGACAAAC
326 GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAAC
9249 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT-AACACATTCTCCTCATTA
391 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTA
*
9313 GGATAAACGAAATTCACGATTT
456 GGATAAACGATATTCACGATTT
*
9335 TCTTTTGCCTGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCAT-CCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* * **
9399 GACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAATGCATT-CC
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
9463 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
* *
9528 -ATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCTTGCTAATCCCCATTCTTT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
* *
9592 TCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGAATACACGATTATTGATGCTTTGGTTTC
261 TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
* * * *
9657 GTAGGAAAGGCTTTCTT-TCAACAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAT
326 GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAAC
*
9721 GAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTA
391 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTA
9786 GGATAAACGATATTCACGATTT
456 GGATAAACGATATTCACGATTT
* * * *
9808 TCTTTTGCATGGAAATCTTTTCTTT-TCCCTTTTTCCATAATATCAAAATTCATCCCACAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA-
* * * *
9872 TG-CAAGCATCGATTGTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAGGAACACATTCC
65 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
*
9936 CTTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
130 CTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
* * * *
10001 TTATGGAAGTAAAGTTTGTCTGTTAAATAAGACAAACAAGAATTGTCTTGCTAATCCCTATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
* *
10066 TTCATGATTACGCACCATAGACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
*
10131 CGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
*
10196 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
390 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATT
10261 AGGATAAACGATATTCACGATTT
455 AGGATAAACGATATTCACGATTT
10284 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* *
10349 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACGCATGCCC
66 GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
* *
10414 TTCATAAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAAATGTTTTCTTACCACCGTTTTT
131 TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
10479 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
* * *
10544 TCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACATGA-TATTGATTCTTTGGTTTC
261 TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
10608 GTAAGAAAGGCTTTCTTGTCACCAA-TTTTGTAAAGTCT
326 GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
10646 TAGACTGTAA
Statistics
Matches: 6514, Mismatches: 404, Indels: 172
0.92 0.06 0.02
Matches are distributed among these distances:
466 86 0.01
467 124 0.02
468 83 0.01
469 107 0.02
470 132 0.02
471 149 0.02
472 475 0.07
473 729 0.11
474 867 0.13
475 1154 0.18
476 1193 0.18
477 671 0.10
478 364 0.06
479 332 0.05
480 46 0.01
481 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (477 bp):
TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
GACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCCC
TTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAAC
GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCATTA
GGATAAACGATATTCACGATTT
Found at i:8536 original size:950 final size:954
Alignment explanation
Indices: 3171--10645 Score: 11910
Period size: 950 Copynumber: 7.9 Consensus size: 954
3161 CTAGTCATGA
* * * * *
3171 TCTTTTGCATGGAAATCTTTT-TTT--CCCTTTTTTCTTAATTTCAAAATTCCTCCCACAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA-
* * * *
3233 TTGCAA-CATT-GATTGTCATAAGAGGCTCCATTCGTTTTCGAGATGGGGA-CTAGGAACACATT
65 TTGCAAGC-TTCGATTCTCGTAAGAGGCTCCATGC-TTTTCGAGATTGGGAGCTAGGAACACATT
* *
3295 -CCTTCATAAGGGTATATGACATTGATGCTTTGG-GTTCGCAAGAAAATGATTTCTTTCCACCGT
128 CCCTTCATAAGGGTACATGACATTGATGCTTTGGTG-TCGCAAGAAAATGTTTTCTTTCCACCGT
*
3358 TTTTG---GAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCTTGCTAATCCCTATT
192 TTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATT
* *
3420 CTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACAC-AATATTGATTC-TTGG
257 CTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGG
* ** * *
3483 TTTCATAAGAAAGGCTTTCTTGTCATTAATTTTTGTAAAGTGTAAGTTCGTGCCTCAAATGAAAC
322 TTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * *
3548 GAACGAGGATTCTGGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTC
387 AAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTC
*
3613 GTTAGGAT-AACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTT
452 ATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTT
*
3677 AATAACAAAATTCATCCCATAATTATGACAAGCTTTCGATTCTCGTAAGAGGCTCCATGCTTTTC
517 AATATCAAAATTCATCCCATAATTATGACAAGC-TTCGATTCTCGTAAGAGGCTCCATGCTTTTC
* *
3742 GAGATTGGGAGCTAAGAACACATTCCCTTCTTAAGGATACACGACATTGACGCTTTGGTGTCGC-
581 GAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCA
3806 AGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
646 AGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
*
3871 GAATTGTCATGCTAATCCCCATTCTTTTTCGTGATTAGGCACCATAAAC-TTGTCTTCTCATAAG
711 GAATTGTCATGCTAATCCCCATTC-TTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAG
* *
3935 GATACAACGATTATTGATGCTTTGGTTTCGTAAGAAACGCTTT-TTGTCACCAATTTTTGTAACG
775 GATAC-ACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAG
* * *
3999 TCTAAGTTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
839 TCTAAGTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGAT
4064 TAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
904 TAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
* ** * * *
4115 TCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTCCATAATATCAAAATCCA-CCCACAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* * * *
4179 TGCAAGCATCGATTGTCGTAACAGGCTCCATTCTTTTCGAGATTGGGAGCTAGGAACACATTCCC
66 TGCAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTCCC
4244 TTCATAAGGGTACATGACATTGATGCTTTGG-GTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
131 TTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
* * * *
4308 TATAGAAGTAAAGTTTGTCTCTAAAATAAGACAAACAAGAATTGTTATGCTTATCCCTATTCTTT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
* * * *
4373 TCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGGATACACGA-TACTGATTCGTTGGTTTC
261 TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
* * *
4437 GTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACGAAC
326 GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * *
4502 GAGGATGCTGGTAATGATCTTCATTC-TTTTGTGATTAGGCACTATAAAACACATT-TCCTCGTT
391 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTAT-AAACACATTCTCCTCATT
* *
4565 AGGATAAACGATATTCACAATTTTC-TTTGCATGGAAATCTTTTCTTTGCCCCCTTTTTCCTTAA
455 AGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTG-CCCCATTTTCCTTAA
*
4629 TAACAAAATTCATCCCATAATTATGACAAGCTTCGATTCGTCGTAAGAGGCTCCATGCTTTTCGA
519 TATCAAAATTCATCCCATAATTATGACAAGCTTCGATTC-TCGTAAGAGGCTCCATGCTTTTCGA
* *
4694 GATTGGGAGCTAAGAACACATTCCCTTCTTAAGGATACACGACATTGACGCTTTGGTGTCGCAAG
583 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCAAG
*
4759 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTGGTCTCTTAAATAAGACAAACAAGA
648 AAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGA
* *
4824 ATTGTC-TGCTAATCCCTATTCTTTTCATGATTACGCACCATAAACTTT-T-TTCTCATAAGGAT
713 ATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGAT
* * *
4886 ACACGA-TACTGATTCTTTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTA
778 ACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTA
4950 AGTTCGTGCCTCAATTGAGACAAACGAGGATTC-AGTCATGATCTTCATTCTTTTTGTGATTAGG
843 AGTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGG
*
5014 GACTATAAACA-ATTCTCCTCATTAGGAT-AACGAAATTCACGATTT
908 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
5059 TCTTTTGC-TGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCC-T-ATTA-
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* **
5120 TGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAATGCATTCC
66 TG-CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTCC
*
5185 CTTCATAAGGATACATGACATTGATGC-TTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
130 CTTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
*
5249 TGATAAAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCC-ATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTC-T
* *
5313 TTTCGTGATTCGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGC-TTGGTT
259 TTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTT
* *
5377 TCGTAAGAAACGCTTTC-TGTCACCAATTTTTGTAACGTCTAAGTTCGTGCCTCAAATGAGACAA
324 TCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAA
5441 ACGAGGATTCTAGTCATGATCTTCATTCTTTTTTGTGATTAGAG-ACTATAAACACATTCTCCTC
389 ACGAGGATTCTAGTCATGATCTTCATTC-TTTTTGTGATTAG-GCACTATAAACACATTCTCCTC
* **
5505 ATTATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTTCCCTTTTTTC
452 ---ATTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTC
* * *
5570 CTTAATATCAAAATTCATCCCATAATTATTG-CAAGCATCGATTGTCGTAAGAGGCTCCATTCTT
514 CTTAATATCAAAATTCATCCCATAATTA-TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTT
* * * * **
5634 TTCGAGATTGCGAGCTAGGAACACATTCCCTTCATAAGGGTACATGACATTGATGCACTGGTGTC
578 TTCGAGATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTC
* *
5699 GCAAGAAAACGTTTTCTTTCCACCGTTTTTTATAGAAGTAAAG-TTGTCTCTTAAATAAGACAAA
643 GCAAGAAAATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAA
* * * *
5763 CAAGAATTGTTATGCTTATCCCTATTCTTTTCATGATTAGGCACCATAAACCTTGTCTTCTCATA
708 CAAGAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATA
* * * *
5828 AGGATACACGA-TACTGATTCGTTGGTTTCGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAA
773 AGGATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAA
5892 GTCTAAGTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGA
838 GTCTAAGTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGA
*
5957 TTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGAAATTCACGATTT
903 TTAGGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
*
6009 TCTTTTGCTTGGAAA-CTTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
1 TCTTTTGCATGGAAATC-TTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
* * * *
6073 -TGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCAAAGAACGCATTC
65 TTG-CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTC
*
6137 CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCA-CGTTT
129 CCTTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTT
*
6201 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCCATTCT
194 TTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTC-
*
6266 TTTTCGTGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGT
258 TTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGT
* * *
6331 TTCGTAAGAAACGCTTTCTTGTCACCAA-TTTTGTAACGTCTAAGTTCGTGCCTCAATTGAGACA
323 TTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
*
6395 AACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTATAAACACATTCTCCTCA
388 AACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCA
* * *
6460 TTAGGATAAACGAAATTCACAATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCCATTTTCCTTA
453 TTAGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTA
* *
6525 ATATCAAAATTCTTCCCATAATTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGA
518 ATATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGA
* * *
6590 GATTGGGAGCAAAGAACGCATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAG
583 GATTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCAAG
6655 AAAATGTTTTCTTTCCACCTTGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
648 AAAATGTTTTCTTTCCACC--GTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAA
* * * *
6720 GAATTGTCATCCTAATCCCTATTCTATTCATGATTACGCACCATAAACTTTGTCTTCTCATAAGG
711 GAATTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGG
* *
6785 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAACGCTTTCTTGTCACCAATTTTTGTAACGTC
776 ATACACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTC
* *
6850 TAAGTTCGTGCCTCAAATGAGACAAACGAGGATTCTAGTCATGACCTTCATTCTTTTTGTGATTA
841 TAAGTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTA
* *
6915 GGGACTATAAACACATTGTCCTCATTAGAATAAACGATATTCACGATTT
906 GGGACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
* * * ** *
6964 TCTTTTGCATGGGAATCTTTTGTTTTTCCCTTTTTTCCTTAATATCAAAATTCATCCCATAACTA
1 TCTTTTGCATGGAAATCTTTT-CTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA
* * * * *
7029 TTGCAAGCATCGA-T-TGGTAACAGGCTCCATTCTTTTCGAGATTGGGAGCTAGGAACACGTTCC
65 TTGCAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTCC
7092 C--CATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
130 CTTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
* * * *
7155 TTATAGAAGTAAAGTTTGTCTCTAAAATAAGACAAACAAGAATTGTTATGCTTATCCCTATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
* *
7220 TTCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGGATACACGA-TATTGATTCTTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
*
7284 CTTAAGAAAGGC-TTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * *
7348 CGAGGATTTTGGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCGTT
390 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
7413 AGGATAAACGATATTCAC--TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAAT
455 AGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAAT
* *
7476 AACAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAGGAGGCTCCATGCTTTTCGAGA
520 ATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGA
* * *
7541 TTGGGAGCTAAGAACACATTCCCTTCTTAAGGATACACGACATTGACACTTTGGTGTCGCAAGAA
585 TTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCAAGAA
* * * * *
7606 AATATTTTTTTTTCCATCGTTTTTGATAGAAGCAAAGTTTGTCTCTTAAATAAAACAAACAAGAA
650 AAT-GTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAA
* * * * *
7671 TTGTCATGCTATTCCCCATTCTTTTCTTGATTAGGCGCCATAAGCTTTGTCTTCTCATAAGTATA
714 TTGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATA
*
7736 CACGATTATTGATGCTTTGGTTTCATAAGAAAGGCTTTCTTGTCACCAATTTTTTGTAAAGTCTA
779 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAA-TTTTTGTAAAGTCTA
7801 AGTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGG
843 AGTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGG
*
7866 GACTATAAA-ACATTCTCCTCATTAGGATAAACGAAATTCACGATTT
908 GACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
*
7912 TC-TTTGCTTGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTA-
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* *
7975 TGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
66 TG-CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTCC
* * *
8040 ATTCATAAGGGTA-ATGACATTGACGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCATCGTTTT
130 CTTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
* * * *
8104 TGATAGAAGCAAAGTTTGTCTCTTAAATAAAACAAACAAGAATTGTCATGCTATTCCCCATTC-T
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
* * * *
8168 TTCTTGATTAGGCGCCATAAGCTTTGTCTTCTCATAAGTATACACGATTATTGATGCTTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
* *
8233 CATAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* *
8298 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT-AA-ATATTCTCCTCATT
390 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* *
8361 AGGATAAACGAAATTCACGATTTTCTTTTGCTTGGAAATCTTTTCTTTGCCCCATTTTCCTTAAT
455 AGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAAT
*
8426 ATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGA
520 ATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGA
* ** * *
8491 TTGGGAGCAAAGAATGCATTCCCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAAAA
585 TTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCAAGAA
8556 AATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAAT
650 AATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAAT
*
8621 TGTCATGCTAATCCCCATTCTTTTTCGTGATTAGGCACCATAAACTTTGTCTTCTCATAAGGAT-
715 TGTCATGCTAATCCCCATTC-TTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATA
* * *
8685 CACGATTGTTGATGCTTTGGTTTCGTAAGAAACGCTTTCTTGTCACCAATTTTTGTAACGTCTAA
779 CACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAA
8750 GTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGG
844 GTTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGG
8815 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
909 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
*
8861 TCTTTTGCATGGAAATCTTTTCTTTGCCCCA-TTTCCTTAATAACAAAATTCATCCCATAATTA-
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
*
8924 TGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAAGAACACATTCC
66 TG-CAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTCC
* * * *
8989 CTTCTTAAGGATACACGACATTGACGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
130 CTTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTT
9054 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
195 TGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTT
* * *
9119 TTCATGATTACGCACCATAAACTTTGTCTTCTCATAAGGATACACGA-TACTGATTCTTTGGTTT
260 TTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTT
* * *
9183 CGTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAATTGAGACAAA
325 CGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
9248 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGACTAT-AACACATTCTCCTCATT
390 CGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* *
9312 AGGATAAACGAAATTCACGATTTTCTTTTGCCTGGAAATCTTTTCTTTGCCCCATTTTCCTTAAT
455 AGGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAAT
*
9377 ATCAAAATTCAT-CCATAATTATGACAAGCTTCGATTCACGTAAGAGGCTCCATGCTTTTCGAGA
520 ATCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGA
* ** *
9441 TTGGGAGCTAGGAATGCATT-CCTTCATAAGGATACATGACATTGATGCTTTGGTGTCGCAAGAA
585 TTGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCAAGAA
9505 AATGTTTTCTTTCCACCGTTTTT-ATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAAT
650 AATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAAT
* * *
9569 TGTCTTGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACCTTGTCTTCTCATAAGAATAC
715 TGTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATAC
* *
9634 ACGATTATTGATGCTTTGGTTTCGTAGGAAAGGCTTTCTT-TCAACAATTTTTGTAAAGTCTAAG
780 ACGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAG
* * *
9698 TTCGTGCCTCAAATGAGACAAATGAGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGGA
845 TTCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGA
9763 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
910 CTATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
* * * *
9808 TCTTTTGCATGGAAATCTTTTCTTT-TCCCTTTTTCCATAATATCAAAATTCATCCCACAATTAT
1 TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
* * *
9872 TGCAAGCATCGATTGTCGTAAGAGGCTCCATTCTTTTCGAGATTGGGAGCTAGGAACACATTCCC
66 TGCAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTCCC
9937 TTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
131 TTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
* * * *
10002 TATGGAAGTAAAGTTTGTCTGTTAAATAAGACAAACAAGAATTGTCTTGCTAATCCCTATTCTTT
196 GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
* *
10067 TCATGATTACGCACCATAGACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
261 TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
* *
10132 GTAAGAAAGGTTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAATTGAGACAAAC
326 GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
10197 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
391 GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
10262 GGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATA
456 GGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATA
10327 TCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGAT
521 TCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGAT
* * * *
10392 TGGGAGCTAAGAACGCATGCCCTTCATAAGGATACATGACATTAATGCTTTGGTGTCGCAAGAAA
586 TGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAA
*
10457 ATGTTTTCTTACCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATT
651 ATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATT
* *
10522 GTCATGCTAATCCCTATTCTTTTCAAGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACA
716 GTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACA
* *
10587 TGA-TATTGATTCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAA-TTTTGTAAAGTCT
781 CGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCT
10646 TAGACTGTAA
Statistics
Matches: 6093, Mismatches: 354, Indels: 161
0.92 0.05 0.02
Matches are distributed among these distances:
941 79 0.01
942 246 0.04
943 68 0.01
944 79 0.01
945 199 0.03
946 269 0.04
947 711 0.12
948 669 0.11
949 1020 0.17
950 1027 0.17
951 693 0.11
952 212 0.03
953 239 0.04
954 259 0.04
955 264 0.04
956 57 0.01
957 2 0.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (954 bp):
TCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATATCAAAATTCATCCCATAATTAT
TGCAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGATTGGGAGCTAGGAACACATTCCC
TTCATAAGGGTACATGACATTGATGCTTTGGTGTCGCAAGAAAATGTTTTCTTTCCACCGTTTTT
GATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATTGTCATGCTAATCCCTATTCTTT
TCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACACGATTATTGATGCTTTGGTTTC
GTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
GAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTA
GGATAAACGATATTCACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTAATA
TCAAAATTCATCCCATAATTATGACAAGCTTCGATTCTCGTAAGAGGCTCCATGCTTTTCGAGAT
TGGGAGCTAAGAACACATTCCCTTCATAAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAA
ATGTTTTCTTTCCACCGTTTTTGATAGAAGTAAAGTTTGTCTCTTAAATAAGACAAACAAGAATT
GTCATGCTAATCCCCATTCTTTTCATGATTAGGCACCATAAACTTTGTCTTCTCATAAGGATACA
CGATTATTGATGCTTTGGTTTCGTAAGAAAGGCTTTCTTGTCACCAATTTTTGTAAAGTCTAAGT
TCGTGCCTCAATTGAGACAAACGAGGATTCTAGTCATGATCTTCATTCTTTTTGTGATTAGGGAC
TATAAACACATTCTCCTCATTAGGATAAACGATATTCACGATTT
Found at i:11988 original size:475 final size:474
Alignment explanation
Indices: 10678--12646 Score: 2621
Period size: 475 Copynumber: 4.2 Consensus size: 474
10668 AACGCATGCC
* *
10678 CTCAATTGTGGCACGAACTTAGACTTTAC-AAAATTGGTGACAAGAAAGCCTTTCTTACGAAACC
1 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACC
* * *
10742 AAAGAATCAATATCATGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCGTGAAAAGAAT
66 AAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
* *
10807 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACATCTATCAAAAACG
131 GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATAAAAAACG
* * ** *
10872 GTAAAAAGAAAACTTTTTCTTGCAACACCAAAGCATCAATGTCATGCGTCCGAATGAAGGGAATG
196 GTAGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
* ** * * **
10937 TG-TTTAGCTCCCAATCTCGAAAAAAATGGATCCTCTTACAAGAATCGAAGCTTGCCATAACTAT
261 TGTTTTAGCTCCCAATCTCGAAAAGAATGGAGACTCTTACGAGAATCGAAGCTTGTCATATTTAT
*
11001 GGGATGAA-TTT-ATATTAAGGAAAATAAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCGT
326 -GGATGAATTTTGATATTAAGGAAAA-CAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGT
* * **
11063 -GA-AT-GGTTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAAAGAATGAAGAT
389 CAATATCAG-TTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGAT
*
11125 CATGACTAGAATCCTCGTTTGT
453 CATTACTAGAATCCTCGTTTGT
* * *
11147 CTCGTTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGACAAGAATGCCTTTCTTACGAAACC
1 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACC
* * *
11212 AAAGCATCAACAATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTATTCATGAAAAGTA
66 AAAGCATCAA-TATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAA
* * * *
11277 TGGGGATTAGCGTGACAATTCTTGTTTGTCTTATTTATGACACAAACTTTACTTCTATAAAAAAC
130 TGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATAAAAAAC
** * * *
11342 GGTAGAAAGAAAACATTTTCTTGTGACACCAAAGCCTCAATGTCGTGTATCCTTATGAA-GGAAT
195 GGTAGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* *
11406 GTGTTCTTAGCTCCAAATCTCGAAAAGAATGGAG-CGTCTTACGGGAATCGAAGCTTGTCATAAT
260 GTGTT-TTAGCTCCCAATCTCGAAAAGAATGGAGAC-TCTTACGAGAATCGAAGCTTGTCAT-AT
* * **
11470 TT-TGAAATGAATTTTGATATTAAGGAAAATAGCACAAAGAAAAGATTTCCATGCAAAAGAAAAT
322 TTATG-GATGAATTTTGATATTAAGGAAAACAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAAT
* ** * *
11534 CGTGAATATTGGTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAAAGAATGAAG
386 CGTCAATATCAGTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAAAGAATGAAG
* *
11599 ATCATTACTGGAATCCTCATTTGT
451 ATCATTACTAGAATCCTCGTTTGT
*
11623 CTCATTTGAGGCGA-GAACTTAGACTTTGCAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAAC
1 CTCATTTGAGGC-ACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAAC
* * *
11687 CAAAGAATCAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGGTGCCTAATCATGAAACGAA
65 CAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAA
* * * * * *
11752 TGGGGACTAGCATGATAATTCATGCTTGTCATATTTAAGAGATAAACTTTACTTCTAT-CAAAAC
130 TGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATAAAAAAC
* * * * * *
11816 GGTGGAAAGAAAACATTTTCTTACGACACCAAGGCATCAACGTCATGTTTCCTAATGAAGGGAAT
195 GGTAGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * *
11881 TTGTTCTTAGCTCCCAATCTCGAAAAGAATGGAGACTGTTATGAGAATTGATGCTTGTCATATTT
260 GTGTT-TTAGCTCCCAATCTCGAAAAGAATGGAGACTCTTACGAGAATCGAAGCTTGTCATATTT
* * ** * * *
11946 AATGGATGAATTTTGATTTTATGGAAAACAGTGCAAAGAAAAGATTTTAACGGAAAAGAAAATCA
324 -ATGGATGAATTTTGATATTAAGGAAAACAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAATCG
* * *
12011 TCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGTATGAAGAT
388 TCAATATCAGTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGAT
12076 CATTACTAGAATCCTCGTTTGT
453 CATTACTAGAATCCTCGTTTGT
* * *
12098 CTCGTTTGA-GCACGAACTTAGACTTTACAAAATTGTGGTGGCAAGAAAGCCTTTCTTACGAAAC
1 CTCATTTGAGGCACGAACTTAGACTTTACAAAAAT-TGGTGACAAGAAAGCCTTTCTTACGAAAC
* * *
12162 CAAAGCATCAATATCGTGTATCCTTATGAGAAGGC-AAGTTTATGCTGCCTAATCGTGAAAAGAA
65 CAAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAA
* * *
12226 TGGGGATTAGCATGACAATTCATGTTTGACTTATTTAAGAGACAAAGTTTACTTCTATGAAAAAC
130 TGGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATAAAAAAC
* *
12291 GGTGGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
195 GGTAGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
* * * * *
12356 GTGCTTTTA-CTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATGAGAATTGATGCTTGTCATAT
260 GTG-TTTTAGC-TCCCAATCTCGAAAAGAA-TGGAGACTCTTACGAGAATCGAAGCTTGTCATAT
* * *
12419 TTAGGGGATGAATTTGGATATTATGGAAAACAGTGCAAAGAAAAGA-TT-CAGTTG-AAAAGAAA
322 TTA-TGGATGAATTTTGATATTAAGGAAAACAGTGCAAAGAAAAGATTTCCA--TGCAAAAGAAA
* * * *
12481 ATCGTCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGTATTA
384 ATCGTCAATATCAGTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAAAGAATGA
* *
12546 ACATCATTAATAGAATCCTCGTTTGT
449 AGATCATTACTAGAATCCTCGTTTGT
* * *
12572 CACATTTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGCAAGAAAGCCTTTCTTACAAAACC
1 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACC
12636 AAAGCATCAAT
66 AAAGCATCAAT
12647 GTCAAGTTTC
Statistics
Matches: 1332, Mismatches: 140, Indels: 52
0.87 0.09 0.03
Matches are distributed among these distances:
469 25 0.02
470 51 0.04
471 160 0.12
472 53 0.04
473 49 0.04
474 314 0.24
475 529 0.40
476 148 0.11
477 3 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (474 bp):
CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACC
AAAGCATCAATATCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAAT
GGGGATTAGCATGACAATTCATGTTTGTCTTATTTAAGAGACAAACTTTACTTCTATAAAAAACG
GTAGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG
TGTTTTAGCTCCCAATCTCGAAAAGAATGGAGACTCTTACGAGAATCGAAGCTTGTCATATTTAT
GGATGAATTTTGATATTAAGGAAAACAGTGCAAAGAAAAGATTTCCATGCAAAAGAAAATCGTCA
ATATCAGTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAAAGAATGAAGATCAT
TACTAGAATCCTCGTTTGT
Found at i:12895 original size:315 final size:315
Alignment explanation
Indices: 12307--12962 Score: 835
Period size: 315 Copynumber: 2.1 Consensus size: 315
12297 AAGAAAACAT
* * * *
12307 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGCTTTTACTTCCTA
1 TTTCTTACAAAACCAAAGCATCAATGTCAAGTATCCTAATGAAAGGAATGTGCTTTTACTTCCAA
* * * * **
12372 ATCTCGAAAAAAGTGGAGACTTTTATGAGAATTGATGCTTGTCATATTTAGGGGATGAATTTGGA
66 ATCTCGAAAAAAGTGGAGACTCTTACGAGAATCGAAGCTTGTCATATTTAGGAAATGAATTTGGA
* **
12437 TATTATGGAAAACAGTGCAAAGAAAAGATTCAGTTGAAAAGAAAATCGTCAATATCATTTATCCT
131 TATTAAGGAAAACAGCACAAAGAAAAGATTCAG-TGAAAAGAAAATCGTCAATATCATTTATCCT
* * * * * *
12502 AATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGTATTAACATCATTAATAGAATCCTCG
195 AATGAGGAGAACGTGTTTATAATACCTAATCACAAAAAGAATGAACATCATTAATAGAATCCTCA
*
12567 TTTGTCACATTTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGGCAAGAAAGCC
260 TTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCC
* *
12622 TTTCTTACAAAACCAAAGCATCAATGTCAAGTTTCC-AAGTG-AGGGAATGTG-TTCTTAGC-TC
1 TTTCTTACAAAACCAAAGCATCAATGTCAAGTATCCTAA-TGAAAGGAATGTGCTT-TTA-CTTC
* * *
12683 CAAATCTCGAAAAGAA-TGGAGCCTCTTACGGGAATCGAAGCTTGTCATAATTT-TGAAATGAAT
63 CAAATCTCGAAAA-AAGTGGAGACTCTTACGAGAATCGAAGCTTGTCAT-ATTTAGGAAATGAAT
* * *
12746 TTTGATATTAAGGAAAATAGCACAAAGAAAAGATTTCCA-TGCAAAAGAAAATCGTGAATATCAT
126 TTGGATATTAAGGAAAACAGCACAAAGAAAAGA-TT-CAGTG-AAAAGAAAATCGTCAATATCAT
* ** *
12810 TTATCCTAATGAGGAGAATGTGTTTATAATACCTAATCACAAAAAGAATGAGGATCATTACA-CG
188 TTATCCTAATGAGGAGAACGTGTTTATAATACCTAATCACAAAAAGAATGAACATCATTA-ATAG
* *
12874 AATCCTCATTTGTCTCATTTGAGGCACGGACTTAGACTTTACAAAAATTGGTGACAAGAAAGCC
252 AATCCTCATTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCC
* *
12938 TTTCTTACGAAACCAAAGAATCAAT
1 TTTCTTACAAAACCAAAGCATCAAT
12963 ATCGTGTATC
Statistics
Matches: 295, Mismatches: 36, Indels: 19
0.84 0.10 0.05
Matches are distributed among these distances:
313 2 0.01
314 91 0.31
315 156 0.53
316 46 0.16
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (315 bp):
TTTCTTACAAAACCAAAGCATCAATGTCAAGTATCCTAATGAAAGGAATGTGCTTTTACTTCCAA
ATCTCGAAAAAAGTGGAGACTCTTACGAGAATCGAAGCTTGTCATATTTAGGAAATGAATTTGGA
TATTAAGGAAAACAGCACAAAGAAAAGATTCAGTGAAAAGAAAATCGTCAATATCATTTATCCTA
ATGAGGAGAACGTGTTTATAATACCTAATCACAAAAAGAATGAACATCATTAATAGAATCCTCAT
TTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCC
Found at i:12934 original size:789 final size:786
Alignment explanation
Indices: 11832--13434 Score: 2188
Period size: 789 Copynumber: 2.0 Consensus size: 786
11822 AAGAAAACAT
* * * * * *
11832 TTTCTTACGACACCAAGGCATCAACGTCATGTTTCCTAATGAAGGGAATTTGTTCTTAGCTCCCA
1 TTTCTTACGAAACCAAAGCATCAATGTCAAGTTTCCTAATGAAGGGAATGTGTTCTTAGCTCCAA
* * * * *
11897 ATCTCGAAAAGAATGGAGACTGTTATGAGAATTGATGCTTGTCATATTTAATGGATGAATTTTGA
66 ATCTCGAAAAGAATGGAGACTCTTACGAGAATCGAAGCTTGTCATATTT-ATGAATGAATTTTGA
* * ** * *
11962 TTTTATGGAAAACAGTGCAAAGAAAAGATTTTAACGGAAAAGAAAATCATCAATATCATTTATCC
130 TATTAAGGAAAACAGCACAAAGAAAAGATTTCAACGCAAAAGAAAATCATCAATATCATTTATCC
* * * *
12027 TAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGTATGAAGATCATTACTAGAATCCTC
195 TAATGAGGAGAACGTGTTTATAATACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTC
* * * *
12092 GTTTGTCTCGTTTGAGCACGAACTTAGACTTTACAAAATTGTGGTGGCAAGAAAGCCTTTCTTAC
260 ATTTGTCTCATTTGAGCACGAACTTAGACTTTACAAAAATGTGGTGACAAGAAAGCCTTTCTTAC
* * * *
12157 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGGC-AAGTTTATGCTGCCTAATCGTGAA
325 GAAACCAAAGAATCAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGCTGCCTAATCATGAA
* * * ** * *
12221 AAGAATGGGGATTAGCATGACAATTCATGTTTGACTTATTTAAGAGACAAAGTTTACTTCTATGA
390 AAGAATGGCGACTAGCATGACAATTCAAGCCTGACTTATTTAAGAGACAAACTTTACTTCTATCA
12286 AAAACGGTGGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAA
455 AAAACGGTGGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAA
* * * * **
12351 GGAATGTGCTT-TTA-CTTCCTAATCTCGAAAA-AAGTGGAGACTTTTATGAGAATTGATGCTTG
520 GGAATGTG-TTCCTAGCTTCC-AATCTCGAAAAGAA-TAGAGACTCTTACGAGAATCAATGCTTG
* ****
12413 TCATATTTAGGGGATGAATTTGGATATTATGGAAAACAGTGCA-AAGAAAAGA-TTCAGTTGAAA
582 TCATAATTAGGGGATGAATTTGGATATTATGGAAAACA--GCACAAGAAAAGATTTC-CCACAAA
*
12476 AGAAAATC-GTCAATATCATTTATCCTAATGAGGAGAACGTGTTTATAGTGCCTAATCACAAAAT
644 AGAAAATCAG-CAATATCATTTATCCTAA--AGG-GAACGTGTTTATAGTGCCTAATCACAAAAA
* * * *
12540 GTATTAACATCATTAATAGAATCCTCGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAA
705 GAATGAACATCATTAATAGAATCCCCATTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAA
*
12605 TTGGTGGCAAGAAAGCC
770 TTGGTGACAAGAAAGCC
*
12622 TTTCTTACAAAACCAAAGCATCAATGTCAAGTTTCC-AAGTG-AGGGAATGTGTTCTTAGCTCCA
1 TTTCTTACGAAACCAAAGCATCAATGTCAAGTTTCCTAA-TGAAGGGAATGTGTTCTTAGCTCCA
* *
12685 AATCTCGAAAAGAATGGAGCCTCTTACGGGAATCGAAGCTTGTCATAATTT-TGAAATGAATTTT
65 AATCTCGAAAAGAATGGAGACTCTTACGAGAATCGAAGCTTGTCAT-ATTTATG-AATGAATTTT
* * * * *
12749 GATATTAAGGAAAATAGCACAAAGAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTAT
128 GATATTAAGGAAAACAGCACAAAGAAAAGATTTCAACGCAAAAGAAAATCATCAATATCATTTAT
* *
12814 CCTAATGAGGAGAATGTGTTTATAATACCTAATCACAAAAAGAATGAGGATCATTAC-ACGAATC
193 CCTAATGAGGAGAACGTGTTTATAATACCTAATCACAAAAAGAATGAAGATCATTACTA-GAATC
*
12878 CTCATTTGTCTCATTTGAGGCACGGACTTAGACTTTACAAAAAT-TGGTGACAAGAAAGCCTTTC
257 CTCATTTGTCTCATTTGA-GCACGAACTTAGACTTTACAAAAATGTGGTGACAAGAAAGCCTTTC
* *
12942 TTACGAAACCAAAGAATCAATATCGTGTATCCTTATTAGAAGACAAAGTTGATGGTGCCTAATCA
321 TTACGAAACCAAAGAATCAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGCTGCCTAATCA
* * *
13007 TGAAACGAATGGCGACTAGCATGACAATTCAAGCCTGTCTTATTTAAGAGACAAACTTTACTTTT
386 TGAAAAGAATGGCGACTAGCATGACAATTCAAGCCTGACTTATTTAAGAGACAAACTTTACTTCT
** * *
13072 ATCAAAATTGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCATCAATGTCATGTTTCCTAAT
451 ATCAAAAACGGTGGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAT
*
13137 GAAGGGAATGTGTTCCTAGCTTCCAATCTCGAAAAGAATAGAGACTCTTACGAGAATCAATGCTT
516 GAAAGGAATGTGTTCCTAGCTTCCAATCTCGAAAAGAATAGAGACTCTTACGAGAATCAATGCTT
* * *
13202 GTCATAATTATGGGATGAATTTTGATATTATGGAAAATAGCACAAGAAAAGATTTCCCACAAAAG
581 GTCATAATTAGGGGATGAATTTGGATATTATGGAAAACAGCACAAGAAAAGATTTCCCACAAAAG
* ** * *
13267 AAAATCAGGAATATTGTTTATCCTAAAGGGAATGTTTTTATAGTGCCTAATCACAAAAAGAATGA
646 AAAATCAGCAATATCATTTATCCTAAAGGGAACGTGTTTATAGTGCCTAATCACAAAAAGAATGA
* * *
13332 AGATCATTACTAGAATCCCCATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATTGGTG
711 ACATCATTAATAGAATCCCCATTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAATTGGTG
13397 ACAAGAAAGCC
776 ACAAGAAAGCC
* *
13408 -TTCTTACGAAACCAAAGAACCAATGTC
1 TTTCTTACGAAACCAAAGCATCAATGTC
13435 GTGTATCCTT
Statistics
Matches: 713, Mismatches: 88, Indels: 29
0.86 0.11 0.03
Matches are distributed among these distances:
785 24 0.03
786 101 0.14
787 3 0.00
788 6 0.01
789 294 0.41
790 278 0.39
791 7 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (786 bp):
TTTCTTACGAAACCAAAGCATCAATGTCAAGTTTCCTAATGAAGGGAATGTGTTCTTAGCTCCAA
ATCTCGAAAAGAATGGAGACTCTTACGAGAATCGAAGCTTGTCATATTTATGAATGAATTTTGAT
ATTAAGGAAAACAGCACAAAGAAAAGATTTCAACGCAAAAGAAAATCATCAATATCATTTATCCT
AATGAGGAGAACGTGTTTATAATACCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCTCA
TTTGTCTCATTTGAGCACGAACTTAGACTTTACAAAAATGTGGTGACAAGAAAGCCTTTCTTACG
AAACCAAAGAATCAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGCTGCCTAATCATGAAA
AGAATGGCGACTAGCATGACAATTCAAGCCTGACTTATTTAAGAGACAAACTTTACTTCTATCAA
AAACGGTGGAAAGAAAACATTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAG
GAATGTGTTCCTAGCTTCCAATCTCGAAAAGAATAGAGACTCTTACGAGAATCAATGCTTGTCAT
AATTAGGGGATGAATTTGGATATTATGGAAAACAGCACAAGAAAAGATTTCCCACAAAAGAAAAT
CAGCAATATCATTTATCCTAAAGGGAACGTGTTTATAGTGCCTAATCACAAAAAGAATGAACATC
ATTAATAGAATCCCCATTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAATTGGTGACAAG
AAAGCC
Found at i:13641 original size:159 final size:158
Alignment explanation
Indices: 13468--14123 Score: 355
Period size: 159 Copynumber: 4.1 Consensus size: 158
13458 GTTTATGGTG
*
13468 CCTAATCAT-GAAAAGAATGGGGATTAGCATGACAATTCTTATTTGTCTTATTTAAGAG-ATAAA
1 CCTAATC-TCGAAAAGAATGGAGATTAGCATGACAATTCTTATTTGTCTTATTTAAG-GCATAAA
*
13531 CTTTACTTCTATCAAAAACGGTGGACAGAAAACATTTTCTTGCGACAACAAAGCATCAATGTCAT
64 CTTTACTT-TATCAAAAACGGTGGACAGAAAACATTTTCTTGCGACAACAAAGCATCAATATCAT
*
13596 GTTTCCTAATGAACGGAATGTGTTCTTAGCT-
128 GTATCCTAATGAA-GGAATGTGTTCTTAGCTA
* *** * * *** ** * * * * * *
13627 CCTAATCTCGAAAAGAATGGAGACTCTTAGGAGAATAGATGCTTGTCATAATTATGGTATGAATT
1 CCTAATCTCGAAAAGAATGGAGATTAGCATGACAATTCTTATTTGTCTTATTTAAGGCATAAACT
** * ** * * * * * * * * * *
13692 TTGA-TTTAAGGAAAAAAGG-CAAAATAAAAGATTTCCATGC-AAAAGAAAATCGTGAATATCAT
66 TT-ACTTT-ATCAAAAACGGTGGACAGAAAACATTTTCTTGCGACAA-CAAAGCATCAATATCAT
13754 -TATCCTAATG-AGGAAAATGTGTT-TATAG-TA
128 GTATCCTAATGAAGG--AATGTGTTCT-TAGCTA
* * * * ** * * * * ** * **
13784 CCTAATCACAAAAAGAATGAAGATCA-CTACAAGAATCCTCATTTCTCCCATTTGAGGCACGAAC
1 CCTAATCTCGAAAAGAATGGAGATTAGC-ATGACAATTCTTATTTGTCTTATTTAAGGCATAAAC
* * * * * *
13848 TTAGACTTTA-CAAAAATTGGT-GACAAGAAAGC-CTTTCTTACGA-AACTAAAGAATCAATATC
65 TT-TACTTTATCAAAAA-CGGTGGAC-AGAAAACATTTTCTTGCGACAAC-AAAGCATCAATATC
* * ** ** * *
13909 GTGTATCCTTATTAGAA-GACA-AAGTTGAT-GGTG
126 ATGTATCC-TAAT-GAAGGA-ATGTGTTCTTAGCTA
*
13942 CCTAATCAT-GAAAAGAATGGGGATTAGCATGACAATTCTTATTTGTCTTATTTAAGAG-ATAAA
1 CCTAATC-TCGAAAAGAATGGAGATTAGCATGACAATTCTTATTTGTCTTATTTAAG-GCATAAA
*
14005 CTTTACTTCTATCAAAAACGGTGGACAGAAAACATTTTCTTGCGACAACAAAGCATCAATGTCAT
64 CTTTACTT-TATCAAAAACGGTGGACAGAAAACATTTTCTTGCGACAACAAAGCATCAATATCAT
*
14070 GTATCCTAATGAAGGGAATGTGTTCTTAACT-
128 GTATCCTAATGAA-GGAATGTGTTCTTAGCTA
*
14101 CCTAATCTCGAAAGGAATGGAGA
1 CCTAATCTCGAAAAGAATGGAGA
14124 CTCTTACGAG
Statistics
Matches: 346, Mismatches: 114, Indels: 74
0.65 0.21 0.14
Matches are distributed among these distances:
155 2 0.01
156 8 0.02
157 95 0.27
158 109 0.32
159 124 0.36
160 7 0.02
161 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.18, T:0.29
Consensus pattern (158 bp):
CCTAATCTCGAAAAGAATGGAGATTAGCATGACAATTCTTATTTGTCTTATTTAAGGCATAAACT
TTACTTTATCAAAAACGGTGGACAGAAAACATTTTCTTGCGACAACAAAGCATCAATATCATGTA
TCCTAATGAAGGAATGTGTTCTTAGCTA
Found at i:14492 original size:476 final size:475
Alignment explanation
Indices: 12635--14525 Score: 2988
Period size: 476 Copynumber: 4.0 Consensus size: 475
12625 CTTACAAAAC
* *
12635 CAAAGCATCAATGTCAAGTTTCC-AAGTG-AGGGAATGTGTTCTTAGCTCCAAATCTCGAAAAGA
1 CAAAGCATCAATGTCATGTTTCCTAA-TGAAGGGAATGTGTTCTTAGCTCCTAATCTCGAAAAGA
* * * * **
12698 ATGGAGCCTCTTACGGGAATCGAAGCTTGTCATAATTTTGAAATGAATTTTGATATTAAGGAAAA
65 ATGGAGACTCTTACGAGAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAA
* *
12763 TAGCACAAAGAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAGAA
130 AAGCA-AAAGAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAAAA
* * * *
12828 TGTGTTTATAATACCTAATCACAAAAAGAATGAGGATCATTACACGAATCCTCATTTGTCTCATT
194 TGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCACTACAAGAATCCTCATTTGTCTCATT
*
12893 TGAGGCACGGACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAA
259 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAA
* * * * *
12958 TCAATATCGTGTATCCTTATTAGAAGACAAAGTTGATGGTGCCTAATCATGAAACGAATGGCGAC
324 CCAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGGTGCCTAATCATGAAAAGAATGGGGAT
* ** * * **
13023 TAGCATGACAATTC-AAGCCTGTCTTATTTAAGAGACAAACTTTACTTTTATCAAAATTGGTGGA
389 TAGCATGACAATTCTTA-TTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGA
* *
13087 AAGAAAACATTTTCTTGCGACAC
453 CAGAAAACATTTTCTTGCGACAA
*
13110 CAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCCTAGCTTCC-AATCTCGAAAAGA
1 CAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTAGC-TCCTAATCTCGAAAAGA
* * *
13174 ATAGAGACTCTTACGAGAATCAATGCTTGTCATAATTATGGGATGAATTTTGATATTATGGAAAA
65 ATGGAGACTCTTACGAGAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAA
* * ** *
13239 TAGCACAAGAAAAGATTTCCCA--CAAAAGAAAATCAG-GAATATTGTTTATCCTAA--AGG-GA
130 AAGCAAAAGAAAAGATTT-CCATGCAAAAGAAAATC-GTGAATATCATTTATCCTAATGAGGAAA
* * * * *
13298 ATGTTTTTATAGTGCCTAATCACAAAAAGAATGAAGATCATTACTAGAATCCCCATTTGTCTCAT
193 ATGTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCACTACAAGAATCCTCATTTGTCTCAT
13363 TTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGACAAGAAAGCC-TTCTTACGAAACCAAAGA
258 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGA
* *
13426 ACCAATGTCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGA
323 ACCAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGGTGCCTAATCATGAAAAGAATGGGGA
13491 TTAGCATGACAATTCTTATTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGA
388 TTAGCATGACAATTCTTATTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGA
13556 CAGAAAACATTTTCTTGCGACAA
453 CAGAAAACATTTTCTTGCGACAA
*
13579 CAAAGCATCAATGTCATGTTTCCTAATGAACGGAATGTGTTCTTAGCTCCTAATCTCGAAAAGAA
1 CAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTAGCTCCTAATCTCGAAAAGAA
* * *
13644 TGGAGACTCTTAGGAGAATAGATGCTTGTCATAATTATGGTATGAATTTTGAT-TTAAGGAAAAA
66 TGGAGACTCTTACGAGAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAAA
*
13708 AGGCAAAATAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCA-TTATCCTAATGAGGAAAAT
131 A-GCAAAAGAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAAAAT
* *
13772 GTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCACTACAAGAATCCTCATTTCTCCCATTT
195 GTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCACTACAAGAATCCTCATTTGTCTCATTT
* *
13837 GAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACTAAAGAAT
260 GAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAAC
*
13902 CAATATCGTGTATCCTTATTAGAAGACAAAGTTGATGGTGCCTAATCATGAAAAGAATGGGGATT
325 CAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGGTGCCTAATCATGAAAAGAATGGGGATT
13967 AGCATGACAATTCTTATTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGACA
390 AGCATGACAATTCTTATTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGACA
14032 GAAAACATTTTCTTGCGACAA
455 GAAAACATTTTCTTGCGACAA
* * *
14053 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAACTCCTAATCTCGAAAGGAA
1 CAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTAGCTCCTAATCTCGAAAAGAA
* *
14118 TGGAGACTCTTACGAGAATCGATGGTTGTCATAATTATGGGATAAATTTTGATATTAAGGAAAAA
66 TGGAGACTCTTACGAGAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAAA
* * *
14183 AGGGAAAATAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTCTCCTAATGAGGAAAAT
131 A-GCAAAAGAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAAAAT
14248 GTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCACTACAAGAATCCTCATTT-TCTCCCAT
195 GTGTTTATAGTACCTAATCACAAAAAGAATGAAGATCACTACAAGAATCCTCATTTGTCT--CAT
14312 TTGAGGCACGAACTTAGACTTTAC-AAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGA
258 TTGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGA
* *
14376 ACCAATGTCGTGTATCCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATGGGGA
323 ACCAATATCGTGTATCCTTATGAGAAGACAAAGTTGATGGTGCCTAATCATGAAAAGAATGGGGA
14441 TTAGCATGACAATTCTTATTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGA
388 TTAGCATGACAATTCTTATTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGA
14506 CAGAAAACATTTTC-TGCGAC
453 CAGAAAACATTTTCTTGCGAC
Statistics
Matches: 1315, Mismatches: 81, Indels: 40
0.92 0.06 0.03
Matches are distributed among these distances:
468 16 0.01
469 284 0.22
470 40 0.03
471 86 0.07
472 86 0.07
473 21 0.02
474 303 0.23
475 100 0.08
476 349 0.27
477 30 0.02
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.29
Consensus pattern (475 bp):
CAAAGCATCAATGTCATGTTTCCTAATGAAGGGAATGTGTTCTTAGCTCCTAATCTCGAAAAGAA
TGGAGACTCTTACGAGAATCGATGCTTGTCATAATTATGGGATGAATTTTGATATTAAGGAAAAA
AGCAAAAGAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAAAATG
TGTTTATAGTACCTAATCACAAAAAGAATGAAGATCACTACAAGAATCCTCATTTGTCTCATTTG
AGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAACC
AATATCGTGTATCCTTATGAGAAGACAAAGTTGATGGTGCCTAATCATGAAAAGAATGGGGATTA
GCATGACAATTCTTATTTGTCTTATTTAAGAGATAAACTTTACTTCTATCAAAAACGGTGGACAG
AAAACATTTTCTTGCGACAA
Done.