Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1533
Parameters: 2 7 7 80 10 50 1000
Length:  44648

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97--147
16
3.2
16
88
0
84
25
13
9
50
1.72
2122--2148
12
2.2
12
100
0
54
62
0
22
14
1.31
3421--3511
9
10.6
9
70
21
61
58
0
3
38
1.15
3421--3476
17
3.2
17
90
7
78
58
0
3
37
1.15
3503--3565
24
2.6
24
92
0
108
47
3
6
42
1.44
4015--4070
14
4.0
14
84
9
78
50
8
0
41
1.34
4019--4074
28
2.0
28
100
0
112
50
7
0
42
1.30
4080--4106
12
2.2
12
100
0
54
40
14
0
44
1.46
4165--4203
9
4.5
8
87
9
51
38
0
2
58
1.12
4165--4203
17
2.2
18
86
13
55
38
0
2
58
1.12
4664--4707
18
2.4
18
100
0
88
72
0
13
13
1.12
4703--4738
18
2.0
18
88
0
54
44
2
52
0
1.15
8740--8769
13
2.2
14
94
5
53
23
10
0
66
1.21
8789--8817
13
2.2
13
100
0
58
31
6
0
62
1.22
8793--8861
13
5.2
13
80
13
68
31
8
1
57
1.38
8854--8885
11
2.9
11
100
0
64
43
0
0
56
0.99
9517--9543
10
2.7
10
100
0
54
70
0
11
18
1.16
13134--13166
14
2.4
14
94
0
57
36
3
0
60
1.12
13158--13197
20
2.0
20
100
0
80
35
5
5
55
1.44
13226--13319
23
3.9
25
69
20
58
35
8
0
56
1.30
13190--13318
32
3.8
32
75
22
104
32
10
0
57
1.32
13226--13299
23
3.4
23
75
17
95
33
9
0
56
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13250--13308
9
7.0
9
76
18
56
33
10
0
55
1.33
13206--13335
41
3.2
41
89
8
178
34
9
0
56
1.31
17900--17949
14
3.4
14
86
8
55
44
6
4
46
1.47
22536--22572
11
3.5
11
88
7
58
62
0
8
29
1.24
22508--22574
21
3.3
19
83
10
71
59
0
10
29
1.31
27082--27120
21
1.9
21
94
5
71
30
25
10
33
1.89
27471--27513
7
5.4
8
79
20
54
76
0
11
11
1.02
27471--27511
16
2.6
16
100
0
82
75
0
12
12
1.05
27468--27521
16
2.9
19
79
15
60
75
0
12
11
1.04
30883--30927
22
2.0
22
95
0
81
55
0
2
42
1.12
41741--41793
14
3.6
14
84
5
70
52
0
1
45
1.11

Tables:   1

The End!