genome.fa.s1536.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1536
Parameters: 2 7 7 80 10 50 1000
Length:  280084

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--5131	476	10.8	476	90	1	7800	35	14	17	31	1.91
4790--5446	317	2.1	315	92	0	1098	34	16	16	32	1.91
4316--5922	791	2.0	794	90	1	2519	35	15	17	32	1.91
5107--15935	476	22.8	476	89	1	15068	35	14	17	31	1.91
15791--16085	150	2.0	150	89	1	448	35	15	19	29	1.93
16196--16713	255	2.0	255	89	0	786	33	15	17	33	1.91
16443--25735	476	19.6	475	88	1	12520	35	14	17	31	1.91
17514--20104	159	16.3	158	63	14	385	35	15	17	31	1.91
16451--25735	951	9.8	951	87	1	12673	35	14	17	31	1.91
25476--25990	255	2.0	255	88	1	755	33	15	17	33	1.91
25720--31430	476	12.0	476	90	1	8293	35	14	18	31	1.91
28717--29381	159	4.2	159	65	15	386	34	14	18	32	1.91
32313--33019	55	12.2	60	79	11	616	26	27	19	26	1.99
32855--32940	27	3.1	27	61	3	64	27	24	20	26	1.99
32344--33019	116	5.9	115	82	8	683	27	27	19	25	1.99
34461--35213	61	12.9	59	82	10	694	27	26	19	26	1.99
34591--35213	55	10.9	55	82	8	605	28	26	19	25	1.99
34871--34958	28	3.1	29	63	18	76	27	29	20	22	1.99
34469--35213	336	2.1	339	80	10	832	27	26	19	26	1.99
34461--35213	116	6.5	115	82	9	768	27	26	19	26	1.99
35305--35404	42	2.4	42	85	8	125	19	28	9	44	1.80
38520--38634	51	2.3	51	87	3	169	31	25	8	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38554--38663	51	2.2	51	81	6	134	31	28	8	31	1.86
38599--38929	79	4.2	78	83	5	391	26	27	14	30	1.95
38884--38955	28	2.6	28	90	0	108	22	30	22	25	1.99
38809--39036	104	2.2	105	84	4	289	24	28	17	30	1.97
38729--39103	183	2.0	186	84	2	497	25	26	17	30	1.97
38912--39194	79	3.6	79	80	2	264	26	27	16	29	1.97
38656--39193	262	2.0	264	83	3	663	26	27	15	30	1.96
40164--82681	476	89.1	476	85	3	52992	35	14	18	31	1.91
40386--72023	159	199.4	159	62	14	2034	35	14	18	31	1.91
77992--79219	159	7.7	158	66	13	407	35	14	17	32	1.90
84306--84375	12	6.4	11	78	17	58	40	0	48	11	1.39
84296--84375	30	2.5	30	78	11	72	43	0	46	10	1.37
84326--84357	9	3.6	9	91	0	55	43	0	43	12	1.42
84296--84427	42	3.1	42	87	2	176	44	1	44	9	1.44
92034--93427	478	2.9	476	86	2	1892	35	14	19	31	1.91
95053--95128	12	6.9	11	75	15	52	39	2	48	9	1.49
95052--95137	24	3.8	24	72	17	85	41	2	45	10	1.51
95043--95161	42	2.8	42	92	0	193	42	2	46	8	1.47
100137--109827	475	20.4	475	85	2	12599	35	14	18	30	1.91
108959--110691	877	2.0	879	85	1	2395	37	14	18	29	1.91
109826--114965	476	10.9	475	86	2	7010	36	14	18	30	1.91
109826--114965	949	5.4	950	87	2	7090	36	14	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117879--117954	21	3.5	20	66	20	53	56	10	19	13	1.65
117872--117965	46	2.0	46	100	0	188	56	10	20	12	1.66
123923--123948	13	2.0	13	100	0	52	38	15	15	30	1.88
126170--126214	21	2.1	21	84	8	56	53	4	20	22	1.63
127814--127880	37	1.9	35	88	11	102	29	25	11	32	1.92
128339--128364	13	2.0	13	100	0	52	30	15	15	38	1.88
128319--128382	32	2.0	33	87	3	94	28	14	17	40	1.88
130773--130819	23	2.0	24	84	12	62	61	19	4	14	1.49
131696--131860	84	2.0	84	82	7	201	24	18	3	52	1.61
133386--133452	36	1.9	35	85	11	93	28	25	13	32	1.93
133911--133936	13	2.0	13	100	0	52	30	15	15	38	1.88
133891--133954	32	2.0	33	87	3	94	28	14	17	40	1.88
134786--134816	15	2.1	15	93	0	53	48	16	22	12	1.80
136894--136919	13	2.0	13	100	0	52	30	15	15	38	1.88
139070--143331	475	9.0	475	87	2	6002	36	14	17	31	1.90
139070--143331	949	4.5	951	93	1	6917	36	14	17	31	1.90
142915--143730	415	2.0	415	88	2	1219	35	14	18	32	1.91
143330--159624	474	34.3	476	90	1	22743	36	14	18	31	1.91
143330--159624	949	17.2	951	89	2	22716	36	14	18	31	1.91
160836--161011	88	2.0	88	100	0	352	23	19	14	42	1.88
161169--161213	21	2.1	21	83	4	54	24	33	4	37	1.76
163015--163040	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163026--163104	20	3.7	20	76	15	77	44	15	13	26	1.84
165111--165141	15	2.1	15	93	0	53	12	22	16	48	1.80
166945--166989	21	2.1	21	84	8	56	22	20	4	53	1.63
169600--173887	476	9.0	474	88	2	6017	36	14	17	31	1.91
169600--173885	951	4.5	950	90	1	6238	36	14	17	31	1.91
179083--179189	42	2.5	42	90	0	178	9	45	2	42	1.51
180735--189163	476	17.8	476	88	1	12066	35	14	19	31	1.91
194641--194759	42	2.8	42	90	0	184	9	45	2	42	1.49
198190--202105	476	8.2	476	89	1	5557	34	14	18	31	1.92
198491--202223	951	3.9	935	84	6	3849	34	14	19	30	1.92
203721--203839	42	2.8	42	90	0	184	43	1	44	10	1.47
208815--211529	476	5.7	476	91	0	4200	30	18	14	35	1.91
212047--217259	476	11.0	475	90	1	7792	35	14	19	31	1.92
223539--223646	42	2.6	42	90	0	180	9	46	3	40	1.54
225650--225943	157	1.9	157	91	1	482	32	17	18	31	1.94
225806--251065	951	26.6	950	91	1	35590	35	14	18	31	1.91
225802--251065	476	53.1	475	89	1	35703	35	14	18	31	1.91
235389--239378	159	25.2	158	63	16	453	35	14	18	31	1.91
250715--251380	315	2.1	315	87	2	942	35	15	18	30	1.91
250250--251856	790	2.0	793	88	1	2409	35	14	18	31	1.91
251042--254601	476	7.5	476	90	1	5435	35	14	18	31	1.91
254187--255011	405	2.0	404	88	2	1221	36	14	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254590--279992	476	53.4	476	83	6	19092	35	14	18	31	1.91

Tables:   1

The End!