Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1537
Parameters: 2 7 7 80 10 50 1000
Length:  29471

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3653--3771
42
2.8
42
87
0
166
9
43
2
44
1.49
7014--7051
19
1.9
21
89
10
62
50
0
0
50
1.00
8530--8564
17
2.1
17
88
0
52
80
2
17
0
0.84
11634--11683
5
9.8
5
79
16
50
62
0
2
36
1.07
11669--11760
33
2.7
32
83
11
96
55
0
1
43
1.07
11695--11774
18
4.9
18
73
24
72
60
0
0
40
0.97
11952--12002
24
2.0
25
85
7
68
27
7
7
56
1.55
11950--12007
24
2.4
24
80
11
57
29
6
6
56
1.51
12004--12044
7
6.0
7
91
5
66
29
2
0
68
1.03
12004--12052
13
3.6
13
89
8
71
28
4
0
67
1.09
15125--15162
3
12.7
3
100
0
76
31
0
0
68
0.90
16005--16045
17
2.4
18
80
12
50
48
0
2
48
1.14
17016--17086
26
2.7
26
80
8
74
35
2
5
56
1.38
17652--17747
23
4.1
22
71
16
68
64
0
0
35
0.94
17651--17688
16
2.4
16
86
8
51
71
0
0
28
0.87
17665--17746
17
4.9
17
72
22
68
63
0
0
36
0.95
17710--17785
40
1.9
40
84
10
102
57
2
0
39
1.12
17650--17773
50
2.4
49
77
15
126
61
0
0
37
1.02
19215--19241
7
3.9
7
100
0
54
11
0
0
88
0.50
19694--19718
2
12.5
2
100
0
50
48
0
0
52
1.00
23510--23638
52
2.5
52
96
0
240
28
18
17
34
1.94
24451--25163
49
14.8
49
77
11
668
32
17
25
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24749--25163
43
9.1
43
78
12
407
31
18
25
25
1.97
24499--25163
92
7.0
92
89
3
819
32
18
25
24
1.97
25170--25330
32
5.0
32
80
9
184
20
16
33
29
1.95
25170--25322
65
2.4
65
88
9
224
19
17
32
30
1.95
25332--25945
34
19.3
32
72
18
394
33
12
33
20
1.89
25364--25930
61
9.1
61
89
5
830
33
11
33
20
1.89
25838--25897
27
2.2
27
88
5
86
33
13
33
20
1.91
25332--25945
190
3.2
190
88
5
933
33
12
33
20
1.89
25934--26053
32
3.8
32
85
7
158
30
18
27
24
1.98

Tables:   1

The End!