Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1538
Parameters: 2 7 7 80 10 50 1000
Length:  104587

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
331--395
32
2.0
34
84
6
89
44
1
0
53
1.09
369--443
33
2.3
33
79
9
82
36
1
0
62
1.04
395--469
12
6.2
12
75
12
64
32
1
0
66
1.00
1456--1497
2
21.0
2
100
0
84
50
0
0
50
1.00
4620--4645
3
8.7
3
100
0
52
69
0
0
30
0.89
4798--4835
20
2.0
20
89
5
60
55
5
2
36
1.37
6113--6155
13
3.5
12
84
12
52
48
0
0
51
1.00
6113--6155
6
7.0
6
80
15
52
48
0
0
51
1.00
6622--6714
12
7.3
12
67
20
55
54
0
0
45
0.99
7625--7667
17
2.5
17
81
14
52
46
0
0
53
1.00
8945--8978
17
1.9
18
94
5
61
32
0
0
67
0.91
8973--9063
27
3.1
27
70
22
85
39
2
2
56
1.24
9575--9608
2
17.0
2
87
0
50
47
2
2
47
1.32
12629--12789
80
2.0
80
97
0
304
42
13
12
32
1.81
15768--15813
22
2.1
22
84
11
60
56
0
2
41
1.11
22854--23070
112
1.9
112
93
0
371
40
20
13
25
1.89
27141--27191
14
3.4
15
78
13
52
37
0
3
58
1.16
27190--27228
21
1.9
20
85
15
53
38
2
2
56
1.27
31637--31679
17
2.5
18
77
11
54
51
2
0
46
1.13
31618--31712
31
3.1
31
77
8
97
56
1
2
40
1.18
32623--32690
14
4.8
14
74
18
52
42
1
0
55
1.08
32773--32806
3
11.3
3
100
0
68
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33143--33212
22
3.1
22
78
15
65
24
0
7
68
1.14
33156--33212
4
14.2
4
79
20
50
24
0
5
70
1.08
33181--33213
13
2.5
14
90
9
52
33
0
0
66
0.92
33267--33318
20
2.7
20
71
14
54
50
0
0
50
1.00
33459--33502
17
2.6
18
79
17
58
70
0
0
29
0.88
33459--33503
16
2.7
17
80
13
58
68
0
0
31
0.89
36121--36164
17
2.3
20
88
11
67
50
2
0
47
1.13
36937--36975
17
2.3
17
90
0
60
48
0
5
46
1.24
36974--37011
16
2.3
17
83
16
53
55
0
0
44
0.99
40880--40961
9
9.4
9
67
21
50
54
1
0
43
1.07
40883--40961
37
2.0
38
83
11
97
55
1
0
43
1.07
41281--41315
18
1.9
18
94
0
61
62
0
2
34
1.10
42039--42092
19
2.9
17
73
26
56
31
0
1
66
1.02
42052--42076
13
1.9
13
100
0
50
36
0
0
64
0.94
42331--42365
2
17.5
2
100
0
70
48
0
0
51
1.00
47937--47999
21
3.0
21
92
0
99
52
14
28
4
1.62
50817--50856
17
2.4
17
95
0
71
32
25
5
37
1.77
51588--51618
16
1.9
16
93
0
53
38
0
0
61
0.96
52345--52378
17
2.0
17
88
0
50
29
2
2
64
1.22
52920--52989
25
2.8
25
85
8
81
42
2
1
52
1.24
54175--54220
17
2.8
17
78
15
60
58
4
4
32
1.37
54938--54991
20
2.7
21
75
11
60
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57180--57208
14
2.1
14
100
0
58
48
0
6
44
1.29
60047--60073
2
13.5
2
100
0
54
51
0
0
48
1.00
60073--60097
2
12.5
2
100
0
50
52
0
48
0
1.00
61596--61652
22
2.6
23
83
13
75
54
0
0
45
0.99
62473--62505
2
16.5
2
93
0
57
51
0
0
48
1.00
62732--62779
25
2.0
22
88
11
69
54
0
0
45
0.99
62732--62779
22
2.0
22
84
11
60
54
0
0
45
0.99
63653--63702
25
2.0
25
88
0
73
40
14
0
46
1.44
64252--64277
2
13.0
2
100
0
52
50
0
0
50
1.00
64810--64848
13
3.2
12
85
14
53
38
0
0
61
0.96
64817--64867
11
4.5
11
76
9
57
39
0
0
60
0.97
64810--64863
24
2.2
24
83
0
72
40
0
0
59
0.98
69228--69267
21
1.9
21
100
0
80
40
15
20
25
1.90
71322--71352
5
6.0
5
96
3
53
58
0
0
41
0.98
74477--74525
25
2.0
24
92
7
82
69
4
10
16
1.32
74982--75086
3
34.3
3
74
14
72
37
0
1
60
1.07
75047--75202
8
19.6
8
68
22
55
39
0
0
60
1.02
75049--75102
10
5.1
11
76
14
51
37
0
0
62
0.95
75048--75116
20
3.5
20
72
18
65
36
0
0
63
0.94
75052--75198
30
4.9
30
71
18
94
39
0
0
59
1.02
75025--75201
15
11.6
16
62
22
60
38
0
1
59
1.09
75045--75171
37
3.7
34
73
13
107
40
0
0
59
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75155--75195
11
3.8
11
81
18
59
31
0
0
68
0.90
75160--75203
21
2.0
23
91
8
74
34
0
0
65
0.93
75601--75656
17
3.2
17
73
14
51
44
0
1
53
1.11
76225--76324
50
2.0
50
100
0
200
26
28
10
36
1.88
81170--81205
17
2.1
17
89
0
54
63
2
0
33
1.08
81278--81316
12
3.2
12
81
3
51
28
2
0
69
1.02
81979--82009
16
1.9
16
93
0
53
87
3
3
6
0.75
82667--82707
21
2.0
20
85
4
55
34
0
2
63
1.08
82801--82828
7
4.0
7
100
0
56
57
0
0
42
0.99
84699--84760
23
2.7
22
80
5
70
46
1
1
50
1.20
84887--84923
20
1.9
20
94
5
67
56
5
0
37
1.22
85205--85250
11
3.9
11
86
13
65
60
0
0
39
0.97
85281--85375
33
2.8
34
77
9
95
54
0
2
43
1.12
85315--85344
15
2.1
15
93
6
53
53
0
0
46
1.00
85313--85368
18
3.3
18
79
18
57
53
0
0
46
1.00
85339--85407
27
2.4
30
81
9
83
56
1
1
40
1.17
85383--85414
15
2.0
17
88
11
50
68
3
0
28
1.04
91890--91962
14
5.1
14
86
5
92
34
0
0
65
0.93
91933--91976
20
2.1
21
84
12
56
34
0
2
63
1.07
92074--92109
18
2.0
18
88
0
54
30
8
0
61
1.26
92240--92294
18
3.1
18
89
0
83
43
0
0
56
0.99
92240--92294
2
27.5
2
84
0
74
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
92240--92325
8
10.9
8
78
9
61
39
0
2
58
1.11
92686--92715
15
2.0
15
93
0
51
46
3
0
50
1.18
93236--93468
50
4.6
50
90
2
351
29
19
20
31
1.97
97881--98113
50
4.6
50
94
1
385
28
20
21
30
1.98
103154--103195
19
2.2
19
83
12
50
45
7
0
47
1.30
103416--103447
11
2.8
12
81
18
50
50
0
0
50
1.00
104056--104097
17
2.4
18
88
7
61
73
0
0
26
0.83
104051--104093
8
5.4
8
81
8
52
74
0
0
25
0.82

Tables:   1

The End!