genome.fa.s1539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1539
Parameters: 2 7 7 80 10 50 1000
Length:  81370

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3792--3859	25	2.8	25	95	2	120	95	4	0	0	0.26
3792--3872	6	13.8	6	87	8	53	92	3	3	0	0.46
3793--3873	22	3.6	23	86	1	103	91	4	3	0	0.51
3792--3859	1	68.0	1	91	0	109	95	4	0	0	0.26
4829--5569	55	13.4	55	90	4	1077	28	30	19	20	1.97
4992--5078	26	3.2	26	65	23	70	28	35	18	17	1.93
5350--5497	29	5.3	29	59	18	71	28	31	18	21	1.97
6166--6214	1	49.0	1	93	0	71	93	0	2	4	0.39
6163--6214	19	2.9	19	91	8	83	88	0	3	7	0.62
6219--6275	21	2.7	21	97	0	105	33	10	19	36	1.86
6331--6398	19	3.9	19	78	21	85	35	11	14	38	1.83
6352--6376	13	1.9	13	100	0	50	36	16	16	32	1.90
6333--6395	32	2.0	32	96	0	117	34	12	15	36	1.86
6438--6463	13	2.0	13	100	0	52	30	15	15	38	1.88
6418--6484	33	2.0	33	88	0	98	25	14	16	43	1.86
9085--9157	28	2.6	30	87	8	100	24	30	19	26	1.98
8817--9229	212	1.9	213	94	2	722	28	25	13	32	1.94
8932--9229	52	5.7	52	68	17	188	27	24	14	33	1.94
10160--10385	60	3.8	62	77	10	148	24	19	12	43	1.85
10193--10391	60	3.3	59	83	2	254	25	20	12	41	1.87
10098--10402	30	10.2	30	68	7	107	24	20	11	43	1.85
13887--13940	20	2.7	20	88	0	72	37	14	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13926--14069	43	3.3	43	96	0	252	31	15	20	31	1.94
25758--25783	13	2.0	13	100	0	52	38	15	15	30	1.88
25740--25803	32	2.0	33	90	3	103	39	18	14	28	1.90
29849--29885	15	2.4	16	82	17	51	51	18	16	13	1.76
31951--31976	13	2.0	13	100	0	52	30	15	15	38	1.88
32097--32142	21	2.2	20	81	11	58	32	19	4	43	1.71
34485--34536	19	2.7	20	87	6	79	38	19	13	28	1.89
37437--37590	69	2.2	70	82	7	190	29	20	11	38	1.88
37507--37720	97	2.2	95	76	6	234	28	23	12	35	1.92
37744--37825	41	2.0	41	100	0	164	24	19	2	53	1.57
38808--38936	41	3.2	40	76	8	136	19	17	13	49	1.79
39041--39221	41	4.4	41	69	5	114	19	20	16	43	1.88
38987--39160	82	2.1	81	86	1	231	16	19	16	47	1.83
39017--39184	81	2.1	82	81	1	194	18	23	14	43	1.87
39146--39257	43	2.6	43	81	0	134	24	19	14	41	1.88
39396--39540	73	2.0	73	89	2	220	17	22	17	43	1.88
39437--39818	154	2.5	153	80	3	397	17	20	17	45	1.86
39660--39874	41	5.2	41	69	6	139	20	21	13	44	1.86
39660--39858	82	2.4	82	84	3	240	20	21	14	43	1.87
41240--41581	145	2.3	151	81	7	380	34	7	8	50	1.59
42056--42084	15	1.9	15	100	0	58	34	13	20	31	1.92
45157--45208	19	2.7	19	84	3	68	36	15	15	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46820--46858	20	2.0	20	84	0	51	15	15	35	33	1.89
47318--47408	27	3.4	27	95	3	157	28	13	18	39	1.88
53210--53236	13	2.1	13	100	0	54	40	14	14	29	1.86
53192--53255	33	2.0	32	87	3	92	40	14	15	29	1.86
53348--53390	21	2.0	22	86	4	61	39	4	9	46	1.57
60079--60113	3	11.7	3	87	0	52	28	31	0	40	1.57
60077--60115	9	4.3	9	81	12	53	25	30	0	43	1.55
61711--61740	13	2.3	13	94	0	51	36	16	16	30	1.91
64300--64922	166	3.8	162	80	5	612	36	11	13	38	1.81
64306--64902	325	1.8	326	81	3	747	35	12	13	39	1.82
67035--67536	79	6.3	79	81	0	502	36	11	23	27	1.90
67046--67540	158	3.1	156	82	3	607	36	12	23	27	1.91
69995--70050	20	2.8	20	86	2	85	26	16	10	46	1.79
76790--76915	20	5.8	20	69	21	92	40	12	18	28	1.87
81307--81359	1	53.0	1	100	0	106	100	0	0	0	0.00

Tables:   1

The End!