genome.fa.s1543.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1543
Parameters: 2 7 7 80 10 50 1000
Length:  108755

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8320--8390	32	2.2	32	89	2	106	43	1	0	54	1.08
8320--8370	16	3.1	16	71	23	52	47	0	0	52	1.00
8328--8389	16	3.9	16	74	19	58	45	1	0	53	1.10
8373--8420	24	1.9	26	87	8	73	33	0	0	66	0.92
8373--8431	24	2.5	23	83	5	64	30	0	0	69	0.89
8786--8829	17	2.4	18	82	17	56	34	2	4	59	1.30
9818--9849	2	16.0	2	100	0	64	50	0	0	50	1.00
10746--10782	3	12.3	3	94	0	65	64	0	0	35	0.94
12469--12499	2	16.0	2	93	6	55	51	0	0	48	1.00
12995--13028	2	17.0	2	100	0	68	50	0	0	50	1.00
13753--13784	11	2.9	11	95	0	55	15	18	0	65	1.27
15672--15727	27	2.0	30	86	10	82	41	1	1	55	1.21
15690--15737	20	2.3	22	78	10	55	45	4	0	50	1.21
15697--15764	20	3.5	20	70	21	56	35	4	0	60	1.17
18573--18612	21	1.9	21	84	0	53	62	2	0	35	1.09
20331--20371	14	3.1	14	82	10	50	53	0	0	46	1.00
20624--20688	22	3.0	22	80	8	71	41	4	0	53	1.21
21334--21375	21	2.0	20	86	4	57	54	0	0	45	0.99
21460--21514	22	2.5	23	77	11	62	41	3	1	52	1.29
25880--25943	22	3.0	22	69	15	55	51	0	1	46	1.10
26524--26575	26	2.1	26	82	10	65	61	5	1	30	1.30
29212--29258	22	2.0	22	84	12	58	36	6	2	55	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29920--29965	3	15.3	3	100	0	92	67	0	0	32	0.91
30215--30245	2	15.5	2	100	0	62	51	0	0	48	1.00
34530--34561	17	1.9	16	93	6	55	50	12	0	37	1.41
34872--34920	24	2.0	24	100	0	98	38	16	20	24	1.92
35459--35503	23	2.0	23	82	8	56	51	0	2	46	1.13
36622--36674	15	3.4	15	75	10	61	41	11	1	45	1.51
36769--36880	38	3.0	37	78	3	134	37	16	16	30	1.90
37723--37757	15	2.3	15	85	14	54	51	0	0	48	1.00
39452--39487	13	2.8	13	91	8	56	47	0	5	47	1.25
45388--45646	50	5.2	49	92	2	392	30	19	20	29	1.97
45941--45977	2	18.5	2	100	0	74	51	0	0	48	1.00
52212--52279	30	2.4	29	79	15	79	41	0	2	55	1.15
52245--52286	19	2.2	19	83	8	50	33	0	0	66	0.92
52311--52350	18	2.2	18	86	8	55	50	2	2	45	1.28
53542--53582	16	2.6	16	88	7	57	19	14	26	39	1.90
53968--54016	15	3.5	15	73	21	61	36	16	0	46	1.47
53963--54019	26	2.2	26	100	0	114	40	15	0	43	1.47
54846--54903	29	2.0	29	86	3	80	25	0	8	65	1.21
54840--54913	30	2.4	31	80	8	89	28	0	6	64	1.18
55741--55794	27	1.9	29	88	7	85	68	1	0	29	1.00
56572--56605	14	2.3	15	90	5	52	47	0	0	52	1.00
57177--57217	15	2.7	15	92	0	64	26	0	4	68	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57365--57412	19	2.8	16	77	17	51	47	4	2	45	1.33
57374--57413	19	2.1	19	90	0	62	42	2	2	52	1.28
58924--58972	20	2.3	22	86	6	66	46	0	0	53	1.00
60124--60156	13	2.4	14	85	10	50	48	0	6	45	1.27
60702--60737	13	2.6	14	91	8	56	61	0	0	38	0.96
61645--61705	31	2.0	31	83	6	79	39	0	1	59	1.08
61694--61738	16	2.9	16	83	9	58	51	0	0	48	1.00
63464--63513	2	25.0	2	91	0	82	46	0	0	54	1.00
63464--63513	18	2.8	18	100	0	100	46	0	0	54	1.00
71490--71527	19	2.0	20	85	15	53	0	15	18	65	1.27
71699--71748	25	2.0	25	84	7	66	48	0	0	52	1.00
73289--73320	3	10.7	3	100	0	64	31	0	0	68	0.90
77273--77313	20	2.0	20	100	0	82	43	9	9	36	1.71
78247--78278	2	16.0	2	93	0	55	46	0	3	50	1.17
81381--81437	27	2.1	27	83	0	69	24	5	22	47	1.72
85697--85765	27	2.6	27	88	0	93	28	7	15	47	1.72
86412--86453	13	3.3	13	78	15	52	30	0	0	69	0.89
86669--86709	21	2.0	21	85	9	57	63	9	4	21	1.44
87269--87308	20	2.0	21	90	5	64	67	0	0	32	0.91
87383--87430	20	2.3	20	89	3	69	47	0	0	52	1.00
88375--88473	51	1.9	51	91	0	162	43	23	17	16	1.87
88421--88871	153	3.0	151	89	1	690	43	14	19	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89624--89748	27	4.9	24	76	13	106	20	7	25	46	1.76
89681--89750	24	2.8	25	89	6	99	21	8	25	44	1.80
94218--94342	27	4.9	24	72	13	88	21	7	24	47	1.76
94220--94290	27	2.6	27	84	6	90	23	7	22	46	1.76
94275--94344	24	2.8	25	85	6	90	21	8	24	45	1.79
97572--97624	20	2.6	20	79	11	54	58	3	0	37	1.16
99627--99691	19	3.5	19	75	16	64	44	0	1	53	1.09
100139--100163	13	1.9	13	100	0	50	44	8	0	48	1.32
100496--100554	30	2.0	29	83	3	73	47	8	0	44	1.33
101248--101304	28	2.0	30	83	13	75	47	0	7	45	1.30
101359--101415	13	4.2	13	79	6	51	61	1	0	36	1.07
101528--101610	41	2.0	41	100	0	166	27	4	16	50	1.65
102228--102310	38	2.2	39	91	4	134	37	15	2	44	1.60

Tables:   1

The End!