Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1544
Parameters: 2 7 7 80 10 50 1000
Length:  38694

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1138--1183
18
2.4
20
85
7
60
43
8
0
47
1.34
1143--1201
21
2.8
20
80
12
57
38
8
0
52
1.32
2295--2340
22
2.1
22
84
8
58
36
0
15
47
1.45
2371--2408
20
1.9
20
84
10
51
55
0
2
42
1.14
2461--2492
13
2.4
14
90
10
50
65
6
0
28
1.16
2713--2765
17
3.0
17
86
5
61
45
0
1
52
1.11
5550--5624
32
2.3
33
84
6
100
46
1
0
52
1.09
8679--8735
16
3.4
16
81
18
64
47
0
0
52
1.00
8666--8781
40
2.9
39
72
11
110
45
0
0
54
0.99
8693--8785
20
4.6
20
69
28
63
46
0
0
53
1.00
8642--8781
61
2.2
58
81
15
147
43
0
0
55
1.04
9051--9111
32
2.0
32
83
6
81
40
0
0
59
0.98
9584--9613
15
1.9
16
93
6
53
36
0
0
63
0.95
11056--11112
23
2.4
24
77
17
64
54
0
0
45
0.99
16044--16081
17
2.2
17
90
9
60
36
0
0
63
0.95
16408--16482
29
2.6
30
80
12
79
40
2
0
57
1.13
16437--16529
27
3.1
30
78
12
77
46
1
0
52
1.07
16404--16554
78
2.0
78
80
10
177
43
2
0
53
1.14
16493--16588
14
7.2
13
70
15
54
44
3
0
52
1.17
16467--16543
32
2.4
31
79
12
84
45
2
0
51
1.14
16964--17004
3
13.7
3
94
0
73
65
0
2
31
1.05
22259--22321
18
3.6
18
75
16
69
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22258--22325
16
4.2
16
78
12
59
35
0
0
64
0.94
22269--22341
31
2.2
32
83
11
87
34
1
0
64
1.02
22366--22459
28
3.3
27
74
15
75
51
0
3
45
1.17
22366--22459
29
3.3
30
73
21
78
51
0
3
45
1.17
22560--22617
26
2.3
25
80
11
64
44
1
0
53
1.10
24183--24227
2
22.5
2
90
0
63
46
4
2
46
1.35
25151--25338
50
3.8
50
88
0
286
29
22
16
31
1.96
29711--29768
30
1.9
30
92
0
98
31
12
24
32
1.91
30776--30805
2
15.0
2
100
0
60
50
0
50
0
1.00
31569--31610
21
2.0
21
81
9
50
40
2
0
57
1.12
32422--32478
27
2.1
27
83
6
71
43
1
0
54
1.10
32785--32817
2
16.5
2
100
0
66
48
0
0
51
1.00
33218--33276
18
3.3
18
68
20
52
49
1
1
47
1.21
36111--36139
2
14.5
2
100
0
58
0
0
48
51
1.00

Tables:   1

The End!