Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1548
Parameters: 2 7 7 80 10 50 1000
Length:  66296

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1421--1446
13
2.0
13
100
0
52
30
15
15
38
1.88
1506--1578
20
3.6
20
81
3
101
31
19
13
35
1.91
1485--1578
41
2.3
41
96
0
170
30
18
12
38
1.88
1485--1560
21
3.7
21
78
3
91
30
17
11
40
1.85
4031--4068
13
2.9
13
96
0
67
31
15
18
34
1.92
4057--4133
20
3.6
20
77
16
73
42
15
15
25
1.86
6143--6173
15
2.1
15
93
0
53
12
22
16
48
1.80
10235--10260
13
2.0
13
100
0
52
30
15
15
38
1.88
10320--10392
20
3.6
20
81
3
101
31
19
13
35
1.91
10299--10392
41
2.3
41
96
0
170
30
18
12
38
1.88
10299--10374
21
3.7
21
78
3
91
30
17
11
40
1.85
11732--11785
19
2.8
19
78
13
56
38
12
11
37
1.79
16705--16761
20
2.7
21
76
13
55
38
3
3
54
1.35
16729--16760
11
2.9
11
100
0
64
37
6
0
56
1.25
16779--16838
32
1.9
32
86
6
88
45
0
1
53
1.10
16791--16839
16
2.9
17
77
20
50
42
0
2
55
1.11
16855--16928
23
3.5
22
80
14
84
32
4
2
60
1.29
16849--16928
40
2.0
39
80
7
90
32
3
2
61
1.27
16884--16930
12
4.0
12
77
5
60
31
0
2
65
1.04
17231--17255
4
6.2
4
100
0
50
24
0
0
76
0.80
18464--18496
17
1.9
17
93
0
57
0
9
3
87
0.63
26518--26597
40
2.0
40
97
0
151
45
8
25
21
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28783--28807
13
1.9
13
100
0
50
80
0
0
20
0.72
31954--31980
13
2.1
13
100
0
54
40
7
22
29
1.81
35387--35425
16
2.4
17
86
4
53
61
0
0
38
0.96
35396--35501
40
2.7
39
79
16
105
50
0
0
50
1.00
35450--35520
11
5.8
13
73
15
62
42
0
0
57
0.98
35443--35523
24
3.3
24
76
10
83
43
0
0
56
0.99
43296--43332
2
18.5
2
100
0
74
48
0
0
51
1.00
44029--44117
22
4.1
23
71
17
66
48
0
0
51
1.00
44027--44107
42
2.0
41
81
16
96
44
0
0
55
0.99
44116--44148
14
2.4
14
90
5
50
45
15
9
30
1.77
47473--47497
6
4.2
6
100
0
50
32
0
16
52
1.44
47872--47932
16
3.9
16
77
14
65
57
1
0
40
1.08
47879--47937
29
2.0
29
90
6
93
61
1
0
37
1.07
48330--48407
32
2.7
27
74
24
70
48
0
2
48
1.15
52171--52201
2
15.5
2
100
0
62
48
0
0
51
1.00
53810--53912
34
3.0
34
82
9
127
40
31
0
27
1.63
53914--53939
12
2.2
12
100
0
52
61
0
0
38
0.96
62055--62096
17
2.3
19
88
8
61
52
0
0
47
1.00
62087--62121
17
2.1
17
88
0
52
40
0
0
60
0.97
63114--63195
29
3.0
26
72
13
51
32
4
3
58
1.37
63220--63309
30
3.0
30
79
6
110
53
1
5
40
1.32
63277--63329
23
2.4
23
90
6
83
52
0
5
41
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65312--65356
23
1.9
24
86
4
65
35
6
0
57
1.25
65364--65426
17
3.8
17
71
23
53
49
3
0
47
1.17
65403--65475
32
2.2
35
80
14
91
39
1
1
57
1.16
65663--65723
30
2.0
31
84
9
81
62
1
6
29
1.30
65963--65988
6
4.3
6
100
0
52
34
0
0
65
0.93

Tables:   1

The End!