Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold155

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 191578
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33


File 2 of 2

Found at i:154589 original size:19 final size:19

Alignment explanation

Indices: 154532--154581 Score: 55 Period size: 19 Copynumber: 2.6 Consensus size: 19 154522 TTTAAAATAA * * 154532 AATAAAATGATTATTATTAT 1 AATAAAATAATTA-TATGAT * * 154552 TATAATATAATTATATGAT 1 AATAAAATAATTATATGAT 154571 AATAAAATAAT 1 AATAAAATAAT 154582 ATCATGATTG Statistics Matches: 24, Mismatches: 6, Indels: 1 0.77 0.19 0.03 Matches are distributed among these distances: 19 14 0.58 20 10 0.42 ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42 Consensus pattern (19 bp): AATAAAATAATTATATGAT Found at i:154609 original size:29 final size:26 Alignment explanation

Indices: 154567--154625 Score: 82 Period size: 26 Copynumber: 2.2 Consensus size: 26 154557 TATAATTATA * 154567 TGATAATAAAATAATATCATGATTGGTCT 1 TGATAATAAAATAA-A--ATGATTGGCCT 154596 TGATAATAAAATAAAATGATTGGCCT 1 TGATAATAAAATAAAATGATTGGCCT 154622 TGAT 1 TGAT 154626 TATTATTATT Statistics Matches: 29, Mismatches: 1, Indels: 3 0.88 0.03 0.09 Matches are distributed among these distances: 26 14 0.48 28 1 0.03 29 14 0.48 ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36 Consensus pattern (26 bp): TGATAATAAAATAAAATGATTGGCCT Found at i:155706 original size:33 final size:33 Alignment explanation

Indices: 155664--155728 Score: 105 Period size: 33 Copynumber: 2.0 Consensus size: 33 155654 GTTGAAGCAA 155664 TGTATCGATACAAT-TCATCATGTATCGATACAT 1 TGTATCGATACAATGT-ATCATGTATCGATACAT * 155697 TGTATCGATATAATGTATCATGTATCGATACA 1 TGTATCGATACAATGTATCATGTATCGATACA 155729 AATAGTGGTA Statistics Matches: 30, Mismatches: 1, Indels: 2 0.91 0.03 0.06 Matches are distributed among these distances: 33 29 0.97 34 1 0.03 ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37 Consensus pattern (33 bp): TGTATCGATACAATGTATCATGTATCGATACAT Found at i:155713 original size:13 final size:13 Alignment explanation

Indices: 155661--155715 Score: 50 Period size: 13 Copynumber: 4.7 Consensus size: 13 155651 GCCGTTGAAG 155661 CAATGTATCGATA 1 CAATGTATCGATA 155674 CAA--T-TC-AT- 1 CAATGTATCGATA 155682 C-ATGTATCGATA 1 CAATGTATCGATA * 155694 CATTGTATCGATA 1 CAATGTATCGATA * 155707 TAATGTATC 1 CAATGTATC 155716 ATGTATCGAT Statistics Matches: 33, Mismatches: 3, Indels: 12 0.69 0.06 0.25 Matches are distributed among these distances: 7 1 0.03 8 1 0.03 9 3 0.09 10 4 0.12 11 3 0.09 12 1 0.03 13 20 0.61 ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36 Consensus pattern (13 bp): CAATGTATCGATA Found at i:155802 original size:19 final size:20 Alignment explanation

Indices: 155758--155830 Score: 87 Period size: 20 Copynumber: 3.7 Consensus size: 20 155748 ATGCTAGTTT * * * 155758 CATGTATTGATACAATTATC 1 CATGTATCGATACAATGATA 155778 CATGTATCGATACAATGA-A 1 CATGTATCGATACAATGATA * 155797 CATGTATCGATACAAAGCATA 1 CATGTATCGATACAATG-ATA 155818 -ATGTATCGATACA 1 CATGTATCGATACA 155831 TCTGGGTGTA Statistics Matches: 47, Mismatches: 4, Indels: 4 0.85 0.07 0.07 Matches are distributed among these distances: 19 16 0.34 20 30 0.64 21 1 0.02 ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30 Consensus pattern (20 bp): CATGTATCGATACAATGATA Found at i:161821 original size:13 final size:15 Alignment explanation

Indices: 161789--161820 Score: 55 Period size: 15 Copynumber: 2.1 Consensus size: 15 161779 GTTTTTTTTC * 161789 CTCTCTTTTTGTATT 1 CTCTTTTTTTGTATT 161804 CTCTTTTTTTGTATT 1 CTCTTTTTTTGTATT 161819 CT 1 CT 161821 TGAAAAAAAA Statistics Matches: 16, Mismatches: 1, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 15 16 1.00 ACGTcount: A:0.06, C:0.19, G:0.06, T:0.69 Consensus pattern (15 bp): CTCTTTTTTTGTATT Found at i:162957 original size:21 final size:20 Alignment explanation

Indices: 162922--162973 Score: 68 Period size: 21 Copynumber: 2.5 Consensus size: 20 162912 TTTGTTGGTG * * 162922 ATTTTGATGAAAAATGAAGT 1 ATTTTGAAGAAAAATGAAGA 162942 ATTTTGAAGTAAAAATGAAGA 1 ATTTTGAAG-AAAAATGAAGA * 162963 AATTTGAAGAA 1 ATTTTGAAGAA 162974 GATTTGATGA Statistics Matches: 28, Mismatches: 3, Indels: 2 0.85 0.09 0.06 Matches are distributed among these distances: 20 10 0.36 21 18 0.64 ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31 Consensus pattern (20 bp): ATTTTGAAGAAAAATGAAGA Found at i:168982 original size:33 final size:33 Alignment explanation

Indices: 168940--169002 Score: 92 Period size: 33 Copynumber: 1.9 Consensus size: 33 168930 GGAAGCAATG * * 168940 TATCGATACAAT-TCATCATGTATCGATACATTA 1 TATCGATACAATGT-ACCATGTATCAATACATTA 168973 TATCGATACAATGTACCATGTATCAATACA 1 TATCGATACAATGTACCATGTATCAATACA 169003 AACAGTGGTA Statistics Matches: 27, Mismatches: 2, Indels: 2 0.87 0.06 0.06 Matches are distributed among these distances: 33 26 0.96 34 1 0.04 ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33 Consensus pattern (33 bp): TATCGATACAATGTACCATGTATCAATACATTA Found at i:170620 original size:20 final size:20 Alignment explanation

Indices: 170594--170668 Score: 71 Period size: 20 Copynumber: 3.6 Consensus size: 20 170584 CACTATTCAT 170594 GTATCGATACATTCTGAATA 1 GTATCGATACATTCTGAATA * * * * 170614 ATATCGATATATAACTG-TTCA 1 GTATCGATACAT-TCTGAAT-A * 170635 TGTATCGATACATTATGAATA 1 -GTATCGATACATTCTGAATA 170656 GTATCGATACATT 1 GTATCGATACATT 170669 GAGTCCAACG Statistics Matches: 42, Mismatches: 9, Indels: 8 0.71 0.15 0.14 Matches are distributed among these distances: 20 24 0.57 21 7 0.17 22 11 0.26 ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37 Consensus pattern (20 bp): GTATCGATACATTCTGAATA Found at i:170734 original size:20 final size:20 Alignment explanation

Indices: 170709--170761 Score: 97 Period size: 20 Copynumber: 2.6 Consensus size: 20 170699 CAAATGCATG * 170709 TATCGATACATTATGAATTA 1 TATCGATACATAATGAATTA 170729 TATCGATACATAATGAATTA 1 TATCGATACATAATGAATTA 170749 TATCGATACATAA 1 TATCGATACATAA 170762 GAGTGTGTAA Statistics Matches: 32, Mismatches: 1, Indels: 0 0.97 0.03 0.00 Matches are distributed among these distances: 20 32 1.00 ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36 Consensus pattern (20 bp): TATCGATACATAATGAATTA Found at i:171522 original size:29 final size:29 Alignment explanation

Indices: 171466--171522 Score: 71 Period size: 28 Copynumber: 2.0 Consensus size: 29 171456 ATCAATATTT * 171466 ATTAGCATAAAAAAATATAAAATTAATTA 1 ATTAGCATAAAAAAATATAAAAATAATTA * * 171495 ATTA-CATAAATAAATTTAATAAATAATT 1 ATTAGCATAAAAAAATATAA-AAATAATT 171523 TAATATAAAA Statistics Matches: 24, Mismatches: 3, Indels: 2 0.83 0.10 0.07 Matches are distributed among these distances: 28 13 0.54 29 11 0.46 ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35 Consensus pattern (29 bp): ATTAGCATAAAAAAATATAAAAATAATTA Found at i:173658 original size:19 final size:19 Alignment explanation

Indices: 173631--173669 Score: 60 Period size: 19 Copynumber: 2.1 Consensus size: 19 173621 AAAATATAAA * * 173631 AAATTAATTATTTATTTTT 1 AAATAAATTATATATTTTT 173650 AAATAAATTATATATTTTT 1 AAATAAATTATATATTTTT 173669 A 1 A 173670 TTATATTTAA Statistics Matches: 18, Mismatches: 2, Indels: 0 0.90 0.10 0.00 Matches are distributed among these distances: 19 18 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (19 bp): AAATAAATTATATATTTTT Found at i:173696 original size:29 final size:29 Alignment explanation

Indices: 173638--173721 Score: 120 Period size: 28 Copynumber: 3.0 Consensus size: 29 173628 AAAAAATTAA * * 173638 TTATTTATTTTTAAATAAATTATATATTT 1 TTATTTATATTTAAATAAATTATAAATTT * 173667 TTA-TTATATTTAAATAAATTTTAAATTT 1 TTATTTATATTTAAATAAATTATAAATTT 173695 TTATTTATATTTAAATAAA-TA-AAATTT 1 TTATTTATATTTAAATAAATTATAAATTT 173722 ATTTAAATAT Statistics Matches: 50, Mismatches: 4, Indels: 4 0.86 0.07 0.07 Matches are distributed among these distances: 27 6 0.12 28 26 0.52 29 18 0.36 ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57 Consensus pattern (29 bp): TTATTTATATTTAAATAAATTATAAATTT Found at i:173700 original size:34 final size:34 Alignment explanation

Indices: 173653--173722 Score: 79 Period size: 33 Copynumber: 2.1 Consensus size: 34 173643 TATTTTTAAA * ** * 173653 TAAATTATATATTTTTATTATATTTAAATAAATTT 1 TAAATTATATATTTATATT-TAAATAAATAAAATT * 173688 TAAATT-TTTATTTATATTTAAATAAATAAAATT 1 TAAATTATATATTTATATTTAAATAAATAAAATT 173721 TA 1 TA 173723 TTTAAATATA Statistics Matches: 30, Mismatches: 5, Indels: 2 0.81 0.14 0.05 Matches are distributed among these distances: 33 14 0.47 34 10 0.33 35 6 0.20 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (34 bp): TAAATTATATATTTATATTTAAATAAATAAAATT Found at i:173728 original size:15 final size:16 Alignment explanation

Indices: 173710--173739 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 173700 TATATTTAAA 173710 TAAATA-AAATTTATT 1 TAAATATAAATTTATT 173725 TAAATATAAATTTAT 1 TAAATATAAATTTAT 173740 AATTAAATAC Statistics Matches: 14, Mismatches: 0, Indels: 1 0.93 0.00 0.07 Matches are distributed among these distances: 15 6 0.43 16 8 0.57 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (16 bp): TAAATATAAATTTATT Found at i:173741 original size:25 final size:26 Alignment explanation

Indices: 173668--173741 Score: 66 Period size: 25 Copynumber: 3.0 Consensus size: 26 173658 TATATATTTT 173668 TATTATATTT-AA-ATAAATTT-TAAA 1 TATT-TATTTAAATATAAATTTATAAA * * * ** 173692 TTTTTATTTATATTTAAATAAATAAA 1 TATTTATTTAAATATAAATTTATAAA 173718 -ATTTATTTAAATATAAATTTATAA 1 TATTTATTTAAATATAAATTTATAA 173742 TTAAATACTT Statistics Matches: 37, Mismatches: 10, Indels: 5 0.71 0.19 0.10 Matches are distributed among these distances: 23 5 0.14 24 4 0.11 25 24 0.65 26 4 0.11 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (26 bp): TATTTATTTAAATATAAATTTATAAA Found at i:173756 original size:30 final size:29 Alignment explanation

Indices: 173714--173809 Score: 97 Period size: 30 Copynumber: 3.3 Consensus size: 29 173704 TTTAAATAAA * * * 173714 TAAAATTTATTTAAATATAAATTTATAAT 1 TAAAAATTATTTAAACATAAATTTAAAAT * * 173743 TAAATACTTATTTATACATAAATTTAAAAT 1 TAAA-AATTATTTAAACATAAATTTAAAAT * 173773 TAAAAATTATTT-AACGGTAAA-TTAAAAGT 1 TAAAAATTATTTAAAC-ATAAATTTAAAA-T 173802 TAAAAATT 1 TAAAAATT 173810 TGGTTTTGCT Statistics Matches: 57, Mismatches: 7, Indels: 6 0.81 0.10 0.09 Matches are distributed among these distances: 28 8 0.14 29 24 0.42 30 25 0.44 ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42 Consensus pattern (29 bp): TAAAAATTATTTAAACATAAATTTAAAAT Found at i:173793 original size:29 final size:29 Alignment explanation

Indices: 173714--173809 Score: 97 Period size: 29 Copynumber: 3.3 Consensus size: 29 173704 TTTAAATAAA * * * * 173714 TAAAATTTATTTAAATATAAATTTATAAT 1 TAAAAATTATTTATACATAAATTTAAAAT * 173743 TAAATACTTATTTATACATAAATTTAAAAT 1 TAAA-AATTATTTATACATAAATTTAAAAT * 173773 TAAAAATTATTTA-ACGGTAAA-TTAAAAGT 1 TAAAAATTATTTATAC-ATAAATTTAAAA-T 173802 TAAAAATT 1 TAAAAATT 173810 TGGTTTTGCT Statistics Matches: 58, Mismatches: 6, Indels: 6 0.83 0.09 0.09 Matches are distributed among these distances: 28 8 0.14 29 25 0.43 30 25 0.43 ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42 Consensus pattern (29 bp): TAAAAATTATTTATACATAAATTTAAAAT Found at i:174034 original size:30 final size:29 Alignment explanation

Indices: 174000--174062 Score: 74 Period size: 29 Copynumber: 2.1 Consensus size: 29 173990 TTTTTATTAC * * * 174000 ATTTATAT-AAATTATTAATTATTAATTTAT 1 ATTTAAATAAAATT-TTAA-TATAAATTAAT 174030 ATTTAAATAAAATTTTAATATAAATTAAT 1 ATTTAAATAAAATTTTAATATAAATTAAT 174059 ATTT 1 ATTT 174063 TATTTAATAT Statistics Matches: 29, Mismatches: 3, Indels: 3 0.83 0.09 0.09 Matches are distributed among these distances: 29 13 0.45 30 11 0.38 31 5 0.17 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (29 bp): ATTTAAATAAAATTTTAATATAAATTAAT Found at i:174043 original size:17 final size:16 Alignment explanation

Indices: 174023--174091 Score: 75 Period size: 17 Copynumber: 4.1 Consensus size: 16 174013 ATTAATTATT 174023 AATTTATATTTAAATAA 1 AATTT-TATTTAAATAA * 174040 AATTTTAATATAAATTAA 1 AATTTT-ATTTAAA-TAA * 174058 TATTTTATTTAATATAA 1 AATTTTATTTAA-ATAA * 174075 AAATTTATTTAAATAA 1 AATTTTATTTAAATAA 174091 A 1 A 174092 TATAAAAATA Statistics Matches: 44, Mismatches: 5, Indels: 7 0.79 0.09 0.12 Matches are distributed among these distances: 16 6 0.14 17 29 0.66 18 9 0.20 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (16 bp): AATTTTATTTAAATAA Found at i:174140 original size:21 final size:23 Alignment explanation

Indices: 174090--174150 Score: 81 Period size: 23 Copynumber: 2.7 Consensus size: 23 174080 TATTTAAATA * * * 174090 AATATAAAAATAAGAGTTATCTT 1 AATAAAAAAATAAAATTTATCTT 174113 AATAAAAAAATAAAATTTAT-TT 1 AATAAAAAAATAAAATTTATCTT 174135 AA-AAAAAAATAAAATT 1 AATAAAAAAATAAAATT 174151 AAGAATTTTT Statistics Matches: 35, Mismatches: 3, Indels: 2 0.88 0.08 0.05 Matches are distributed among these distances: 21 14 0.40 22 4 0.11 23 17 0.49 ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31 Consensus pattern (23 bp): AATAAAAAAATAAAATTTATCTT Found at i:175954 original size:20 final size:20 Alignment explanation

Indices: 175931--175987 Score: 80 Period size: 20 Copynumber: 2.9 Consensus size: 20 175921 AAGCACCCAG * 175931 ATGTATCGATACATTCTTTA 1 ATGTATCGATACATTCTTGA * 175951 ATGTATCGATACATGT-ATGA 1 ATGTATCGATACAT-TCTTGA 175971 ATGTATCGATACATTCT 1 ATGTATCGATACATTCT 175988 GTCTTTTTAC Statistics Matches: 32, Mismatches: 3, Indels: 4 0.82 0.08 0.10 Matches are distributed among these distances: 19 1 0.03 20 30 0.94 21 1 0.03 ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40 Consensus pattern (20 bp): ATGTATCGATACATTCTTGA Found at i:176011 original size:51 final size:51 Alignment explanation

Indices: 175951--176083 Score: 230 Period size: 51 Copynumber: 2.6 Consensus size: 51 175941 ACATTCTTTA * * * 175951 ATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTTACTCAG 1 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG 176002 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG 1 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG * 176053 ATGTATCAATACATTTTTCAATGTATCGATA 1 ATGTATCGATACATTTTTCAATGTATCGATA 176084 TATCTAGTTA Statistics Matches: 78, Mismatches: 4, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 51 78 1.00 ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43 Consensus pattern (51 bp): ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG Found at i:189910 original size:9 final size:9 Alignment explanation

Indices: 189896--189929 Score: 50 Period size: 9 Copynumber: 3.7 Consensus size: 9 189886 CATACCCAAA 189896 AAAAAAAAC 1 AAAAAAAAC 189905 AAAAAAAAC 1 AAAAAAAAC * 189914 TAAAAAAAAT 1 -AAAAAAAAC 189924 AAAAAA 1 AAAAAA 189930 GCCAAGGAAA Statistics Matches: 23, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 9 15 0.65 10 8 0.35 ACGTcount: A:0.88, C:0.06, G:0.00, T:0.06 Consensus pattern (9 bp): AAAAAAAAC Found at i:191216 original size:28 final size:28 Alignment explanation

Indices: 191176--191575 Score: 534 Period size: 28 Copynumber: 14.0 Consensus size: 28 191166 TGTTTATCTC 191176 TTCAAAGCCCACAAGTCAGTGGCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * 191204 TTCAAAGCCCACAAGTTAGTGGCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * * 191232 CTCAAAGCCCACAAGTCAGTGGCATCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT 191260 TTCAAAGCCCACAAGTCAGTGGCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * 191288 TTCAAAACCCACAAGTCAGTGGCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * * * 191316 TTCAAAGCCCACACGAGTCGGTGGAAACTCTT 1 TTCAAAGCCCACA--AGTCAGTGG-CAC-CCT * 191348 TTTAAAGCCCACAAGTCAGTGGCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * 191376 TTCAAAGCCCACAAGTTAGTGGCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * * 191404 TTCAAAGCCCACACAAGTCGGTGGCAACTCTT 1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT * * 191436 TTCAAAGCCCACAACTCAGTGGCATCCAT 1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT * * 191465 TTCAAAGCCCACAAGTCAAT-GCATCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT 191492 TTCAAAGCCCA-AAGTCAGTGGCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * 191519 TTCAAAGCCCACAAGTCAGTGGCATCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT * * * 191547 TTCAAAACCCACAAGTTAGTGTCACCCT 1 TTCAAAGCCCACAAGTCAGTGGCACCCT 191575 T 1 T 191576 CAA Statistics Matches: 327, Mismatches: 34, Indels: 22 0.85 0.09 0.06 Matches are distributed among these distances: 26 7 0.02 27 30 0.09 28 195 0.60 29 25 0.08 30 41 0.13 31 6 0.02 32 23 0.07 ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21 Consensus pattern (28 bp): TTCAAAGCCCACAAGTCAGTGGCACCCT Found at i:191387 original size:88 final size:85 Alignment explanation

Indices: 191176--191575 Score: 547 Period size: 88 Copynumber: 4.7 Consensus size: 85 191166 TGTTTATCTC * 191176 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTCTCAAAGCC 1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC * 191241 CACAAGTCAGTGGCA-TCCT 66 CACAAGTCAGTGGAACTCCT * * 191260 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCC 1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC * * 191325 CACACGAGTCGGTGGAAACTCTT 66 CACA--AGTCAGTGG-AACTCCT * 191348 TTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC 1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAG-C * * 191413 CACACAAGTCGGTGGCAACTCTT 65 C-CACAAGTCAGTGG-AACTCCT * * * * * 191436 TTCAAAGCCCACAACTCAGTGGCATCCATTTCAAAGCCCACAAGTCAAT-GCATCCTTTCAAAGC 1 TTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC * 191500 CCA-AAGTCAGTGGCAC-CCT 65 CCACAAGTCAGTGGAACTCCT * * * 191519 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAACCCACAAGTTAGTGTCACCCTT 1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTT 191576 CAA Statistics Matches: 281, Mismatches: 27, Indels: 17 0.86 0.08 0.05 Matches are distributed among these distances: 82 19 0.07 83 31 0.11 84 68 0.24 85 9 0.03 86 10 0.04 87 3 0.01 88 114 0.41 89 23 0.08 90 4 0.01 ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21 Consensus pattern (85 bp): TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC CACAAGTCAGTGGAACTCCT Done.