Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold155
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 191578
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 2 of 2
Found at i:154589 original size:19 final size:19
Alignment explanation
Indices: 154532--154581 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
154522 TTTAAAATAA
* *
154532 AATAAAATGATTATTATTAT
1 AATAAAATAATTA-TATGAT
* *
154552 TATAATATAATTATATGAT
1 AATAAAATAATTATATGAT
154571 AATAAAATAAT
1 AATAAAATAAT
154582 ATCATGATTG
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (19 bp):
AATAAAATAATTATATGAT
Found at i:154609 original size:29 final size:26
Alignment explanation
Indices: 154567--154625 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
154557 TATAATTATA
*
154567 TGATAATAAAATAATATCATGATTGGTCT
1 TGATAATAAAATAA-A--ATGATTGGCCT
154596 TGATAATAAAATAAAATGATTGGCCT
1 TGATAATAAAATAAAATGATTGGCCT
154622 TGAT
1 TGAT
154626 TATTATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 14 0.48
28 1 0.03
29 14 0.48
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (26 bp):
TGATAATAAAATAAAATGATTGGCCT
Found at i:155706 original size:33 final size:33
Alignment explanation
Indices: 155664--155728 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
155654 GTTGAAGCAA
155664 TGTATCGATACAAT-TCATCATGTATCGATACAT
1 TGTATCGATACAATGT-ATCATGTATCGATACAT
*
155697 TGTATCGATATAATGTATCATGTATCGATACA
1 TGTATCGATACAATGTATCATGTATCGATACA
155729 AATAGTGGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAATGTATCATGTATCGATACAT
Found at i:155713 original size:13 final size:13
Alignment explanation
Indices: 155661--155715 Score: 50
Period size: 13 Copynumber: 4.7 Consensus size: 13
155651 GCCGTTGAAG
155661 CAATGTATCGATA
1 CAATGTATCGATA
155674 CAA--T-TC-AT-
1 CAATGTATCGATA
155682 C-ATGTATCGATA
1 CAATGTATCGATA
*
155694 CATTGTATCGATA
1 CAATGTATCGATA
*
155707 TAATGTATC
1 CAATGTATC
155716 ATGTATCGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 20 0.61
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:155802 original size:19 final size:20
Alignment explanation
Indices: 155758--155830 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
155748 ATGCTAGTTT
* * *
155758 CATGTATTGATACAATTATC
1 CATGTATCGATACAATGATA
155778 CATGTATCGATACAATGA-A
1 CATGTATCGATACAATGATA
*
155797 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-ATA
155818 -ATGTATCGATACA
1 CATGTATCGATACA
155831 TCTGGGTGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.34
20 30 0.64
21 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Found at i:161821 original size:13 final size:15
Alignment explanation
Indices: 161789--161820 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
161779 GTTTTTTTTC
*
161789 CTCTCTTTTTGTATT
1 CTCTTTTTTTGTATT
161804 CTCTTTTTTTGTATT
1 CTCTTTTTTTGTATT
161819 CT
1 CT
161821 TGAAAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.06, T:0.69
Consensus pattern (15 bp):
CTCTTTTTTTGTATT
Found at i:162957 original size:21 final size:20
Alignment explanation
Indices: 162922--162973 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
162912 TTTGTTGGTG
* *
162922 ATTTTGATGAAAAATGAAGT
1 ATTTTGAAGAAAAATGAAGA
162942 ATTTTGAAGTAAAAATGAAGA
1 ATTTTGAAG-AAAAATGAAGA
*
162963 AATTTGAAGAA
1 ATTTTGAAGAA
162974 GATTTGATGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (20 bp):
ATTTTGAAGAAAAATGAAGA
Found at i:168982 original size:33 final size:33
Alignment explanation
Indices: 168940--169002 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
168930 GGAAGCAATG
* *
168940 TATCGATACAAT-TCATCATGTATCGATACATTA
1 TATCGATACAATGT-ACCATGTATCAATACATTA
168973 TATCGATACAATGTACCATGTATCAATACA
1 TATCGATACAATGTACCATGTATCAATACA
169003 AACAGTGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (33 bp):
TATCGATACAATGTACCATGTATCAATACATTA
Found at i:170620 original size:20 final size:20
Alignment explanation
Indices: 170594--170668 Score: 71
Period size: 20 Copynumber: 3.6 Consensus size: 20
170584 CACTATTCAT
170594 GTATCGATACATTCTGAATA
1 GTATCGATACATTCTGAATA
* * * *
170614 ATATCGATATATAACTG-TTCA
1 GTATCGATACAT-TCTGAAT-A
*
170635 TGTATCGATACATTATGAATA
1 -GTATCGATACATTCTGAATA
170656 GTATCGATACATT
1 GTATCGATACATT
170669 GAGTCCAACG
Statistics
Matches: 42, Mismatches: 9, Indels: 8
0.71 0.15 0.14
Matches are distributed among these distances:
20 24 0.57
21 7 0.17
22 11 0.26
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (20 bp):
GTATCGATACATTCTGAATA
Found at i:170734 original size:20 final size:20
Alignment explanation
Indices: 170709--170761 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
170699 CAAATGCATG
*
170709 TATCGATACATTATGAATTA
1 TATCGATACATAATGAATTA
170729 TATCGATACATAATGAATTA
1 TATCGATACATAATGAATTA
170749 TATCGATACATAA
1 TATCGATACATAA
170762 GAGTGTGTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.36
Consensus pattern (20 bp):
TATCGATACATAATGAATTA
Found at i:171522 original size:29 final size:29
Alignment explanation
Indices: 171466--171522 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
171456 ATCAATATTT
*
171466 ATTAGCATAAAAAAATATAAAATTAATTA
1 ATTAGCATAAAAAAATATAAAAATAATTA
* *
171495 ATTA-CATAAATAAATTTAATAAATAATT
1 ATTAGCATAAAAAAATATAA-AAATAATT
171523 TAATATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (29 bp):
ATTAGCATAAAAAAATATAAAAATAATTA
Found at i:173658 original size:19 final size:19
Alignment explanation
Indices: 173631--173669 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
173621 AAAATATAAA
* *
173631 AAATTAATTATTTATTTTT
1 AAATAAATTATATATTTTT
173650 AAATAAATTATATATTTTT
1 AAATAAATTATATATTTTT
173669 A
1 A
173670 TTATATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
AAATAAATTATATATTTTT
Found at i:173696 original size:29 final size:29
Alignment explanation
Indices: 173638--173721 Score: 120
Period size: 28 Copynumber: 3.0 Consensus size: 29
173628 AAAAAATTAA
* *
173638 TTATTTATTTTTAAATAAATTATATATTT
1 TTATTTATATTTAAATAAATTATAAATTT
*
173667 TTA-TTATATTTAAATAAATTTTAAATTT
1 TTATTTATATTTAAATAAATTATAAATTT
173695 TTATTTATATTTAAATAAA-TA-AAATTT
1 TTATTTATATTTAAATAAATTATAAATTT
173722 ATTTAAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 6 0.12
28 26 0.52
29 18 0.36
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
TTATTTATATTTAAATAAATTATAAATTT
Found at i:173700 original size:34 final size:34
Alignment explanation
Indices: 173653--173722 Score: 79
Period size: 33 Copynumber: 2.1 Consensus size: 34
173643 TATTTTTAAA
* ** *
173653 TAAATTATATATTTTTATTATATTTAAATAAATTT
1 TAAATTATATATTTATATT-TAAATAAATAAAATT
*
173688 TAAATT-TTTATTTATATTTAAATAAATAAAATT
1 TAAATTATATATTTATATTTAAATAAATAAAATT
173721 TA
1 TA
173723 TTTAAATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
33 14 0.47
34 10 0.33
35 6 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (34 bp):
TAAATTATATATTTATATTTAAATAAATAAAATT
Found at i:173728 original size:15 final size:16
Alignment explanation
Indices: 173710--173739 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
173700 TATATTTAAA
173710 TAAATA-AAATTTATT
1 TAAATATAAATTTATT
173725 TAAATATAAATTTAT
1 TAAATATAAATTTAT
173740 AATTAAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TAAATATAAATTTATT
Found at i:173741 original size:25 final size:26
Alignment explanation
Indices: 173668--173741 Score: 66
Period size: 25 Copynumber: 3.0 Consensus size: 26
173658 TATATATTTT
173668 TATTATATTT-AA-ATAAATTT-TAAA
1 TATT-TATTTAAATATAAATTTATAAA
* * * **
173692 TTTTTATTTATATTTAAATAAATAAA
1 TATTTATTTAAATATAAATTTATAAA
173718 -ATTTATTTAAATATAAATTTATAA
1 TATTTATTTAAATATAAATTTATAA
173742 TTAAATACTT
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
23 5 0.14
24 4 0.11
25 24 0.65
26 4 0.11
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TATTTATTTAAATATAAATTTATAAA
Found at i:173756 original size:30 final size:29
Alignment explanation
Indices: 173714--173809 Score: 97
Period size: 30 Copynumber: 3.3 Consensus size: 29
173704 TTTAAATAAA
* * *
173714 TAAAATTTATTTAAATATAAATTTATAAT
1 TAAAAATTATTTAAACATAAATTTAAAAT
* *
173743 TAAATACTTATTTATACATAAATTTAAAAT
1 TAAA-AATTATTTAAACATAAATTTAAAAT
*
173773 TAAAAATTATTT-AACGGTAAA-TTAAAAGT
1 TAAAAATTATTTAAAC-ATAAATTTAAAA-T
173802 TAAAAATT
1 TAAAAATT
173810 TGGTTTTGCT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
28 8 0.14
29 24 0.42
30 25 0.44
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (29 bp):
TAAAAATTATTTAAACATAAATTTAAAAT
Found at i:173793 original size:29 final size:29
Alignment explanation
Indices: 173714--173809 Score: 97
Period size: 29 Copynumber: 3.3 Consensus size: 29
173704 TTTAAATAAA
* * * *
173714 TAAAATTTATTTAAATATAAATTTATAAT
1 TAAAAATTATTTATACATAAATTTAAAAT
*
173743 TAAATACTTATTTATACATAAATTTAAAAT
1 TAAA-AATTATTTATACATAAATTTAAAAT
*
173773 TAAAAATTATTTA-ACGGTAAA-TTAAAAGT
1 TAAAAATTATTTATAC-ATAAATTTAAAA-T
173802 TAAAAATT
1 TAAAAATT
173810 TGGTTTTGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
28 8 0.14
29 25 0.43
30 25 0.43
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (29 bp):
TAAAAATTATTTATACATAAATTTAAAAT
Found at i:174034 original size:30 final size:29
Alignment explanation
Indices: 174000--174062 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
173990 TTTTTATTAC
* * *
174000 ATTTATAT-AAATTATTAATTATTAATTTAT
1 ATTTAAATAAAATT-TTAA-TATAAATTAAT
174030 ATTTAAATAAAATTTTAATATAAATTAAT
1 ATTTAAATAAAATTTTAATATAAATTAAT
174059 ATTT
1 ATTT
174063 TATTTAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
29 13 0.45
30 11 0.38
31 5 0.17
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (29 bp):
ATTTAAATAAAATTTTAATATAAATTAAT
Found at i:174043 original size:17 final size:16
Alignment explanation
Indices: 174023--174091 Score: 75
Period size: 17 Copynumber: 4.1 Consensus size: 16
174013 ATTAATTATT
174023 AATTTATATTTAAATAA
1 AATTT-TATTTAAATAA
*
174040 AATTTTAATATAAATTAA
1 AATTTT-ATTTAAA-TAA
*
174058 TATTTTATTTAATATAA
1 AATTTTATTTAA-ATAA
*
174075 AAATTTATTTAAATAA
1 AATTTTATTTAAATAA
174091 A
1 A
174092 TATAAAAATA
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
16 6 0.14
17 29 0.66
18 9 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTTTATTTAAATAA
Found at i:174140 original size:21 final size:23
Alignment explanation
Indices: 174090--174150 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
174080 TATTTAAATA
* * *
174090 AATATAAAAATAAGAGTTATCTT
1 AATAAAAAAATAAAATTTATCTT
174113 AATAAAAAAATAAAATTTAT-TT
1 AATAAAAAAATAAAATTTATCTT
174135 AA-AAAAAAATAAAATT
1 AATAAAAAAATAAAATT
174151 AAGAATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
21 14 0.40
22 4 0.11
23 17 0.49
ACGTcount: A:0.64, C:0.02, G:0.03, T:0.31
Consensus pattern (23 bp):
AATAAAAAAATAAAATTTATCTT
Found at i:175954 original size:20 final size:20
Alignment explanation
Indices: 175931--175987 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
175921 AAGCACCCAG
*
175931 ATGTATCGATACATTCTTTA
1 ATGTATCGATACATTCTTGA
*
175951 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTGA
175971 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
175988 GTCTTTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 1 0.03
20 30 0.94
21 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCTTGA
Found at i:176011 original size:51 final size:51
Alignment explanation
Indices: 175951--176083 Score: 230
Period size: 51 Copynumber: 2.6 Consensus size: 51
175941 ACATTCTTTA
* * *
175951 ATGTATCGATACATGTATGAATGTATCGATACATTCTGTCTTTTTACTCAG
1 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG
176002 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG
1 ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG
*
176053 ATGTATCAATACATTTTTCAATGTATCGATA
1 ATGTATCGATACATTTTTCAATGTATCGATA
176084 TATCTAGTTA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 78 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.43
Consensus pattern (51 bp):
ATGTATCGATACATTTTTCAATGTATCGATACATTCTGTCTTTTTACTCAG
Found at i:189910 original size:9 final size:9
Alignment explanation
Indices: 189896--189929 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
189886 CATACCCAAA
189896 AAAAAAAAC
1 AAAAAAAAC
189905 AAAAAAAAC
1 AAAAAAAAC
*
189914 TAAAAAAAAT
1 -AAAAAAAAC
189924 AAAAAA
1 AAAAAA
189930 GCCAAGGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.88, C:0.06, G:0.00, T:0.06
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:191216 original size:28 final size:28
Alignment explanation
Indices: 191176--191575 Score: 534
Period size: 28 Copynumber: 14.0 Consensus size: 28
191166 TGTTTATCTC
191176 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
191204 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
191232 CTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
191260 TTCAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
191288 TTCAAAACCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
191316 TTCAAAGCCCACACGAGTCGGTGGAAACTCTT
1 TTCAAAGCCCACA--AGTCAGTGG-CAC-CCT
*
191348 TTTAAAGCCCACAAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
191376 TTCAAAGCCCACAAGTTAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* *
191404 TTCAAAGCCCACACAAGTCGGTGGCAACTCTT
1 TTCAAAG-CC-CACAAGTCAGTGGC-AC-CCT
* *
191436 TTCAAAGCCCACAACTCAGTGGCATCCAT
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCT
* *
191465 TTCAAAGCCCACAAGTCAAT-GCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
191492 TTCAAAGCCCA-AAGTCAGTGGCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
*
191519 TTCAAAGCCCACAAGTCAGTGGCATCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
* * *
191547 TTCAAAACCCACAAGTTAGTGTCACCCT
1 TTCAAAGCCCACAAGTCAGTGGCACCCT
191575 T
1 T
191576 CAA
Statistics
Matches: 327, Mismatches: 34, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.02
27 30 0.09
28 195 0.60
29 25 0.08
30 41 0.13
31 6 0.02
32 23 0.07
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (28 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCT
Found at i:191387 original size:88 final size:85
Alignment explanation
Indices: 191176--191575 Score: 547
Period size: 88 Copynumber: 4.7 Consensus size: 85
191166 TGTTTATCTC
*
191176 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTCTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
*
191241 CACAAGTCAGTGGCA-TCCT
66 CACAAGTCAGTGGAACTCCT
* *
191260 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAACCCACAAGTCAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
* *
191325 CACACGAGTCGGTGGAAACTCTT
66 CACA--AGTCAGTGG-AACTCCT
*
191348 TTTAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAG-C
* *
191413 CACACAAGTCGGTGGCAACTCTT
65 C-CACAAGTCAGTGG-AACTCCT
* * * * *
191436 TTCAAAGCCCACAACTCAGTGGCATCCATTTCAAAGCCCACAAGTCAAT-GCATCCTTTCAAAGC
1 TTCAAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGC
*
191500 CCA-AAGTCAGTGGCAC-CCT
65 CCACAAGTCAGTGGAACTCCT
* * *
191519 TTCAAAGCCCACAAGTCAGTGGCATCCTTTCAAAACCCACAAGTTAGTGTCACCCTT
1 TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTT
191576 CAA
Statistics
Matches: 281, Mismatches: 27, Indels: 17
0.86 0.08 0.05
Matches are distributed among these distances:
82 19 0.07
83 31 0.11
84 68 0.24
85 9 0.03
86 10 0.04
87 3 0.01
88 114 0.41
89 23 0.08
90 4 0.01
ACGTcount: A:0.29, C:0.33, G:0.17, T:0.21
Consensus pattern (85 bp):
TTCAAAGCCCACAAGTCAGTGGCACCCTTTCAAAGCCCACAAGTTAGTGGCACCCTTTCAAAGCC
CACAAGTCAGTGGAACTCCT
Done.