Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1550
Parameters: 2 7 7 80 10 50 1000
Length:  29812

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
989--1015
2
13.5
2
100
0
54
51
0
48
0
1.00
4503--4535
16
2.0
17
88
5
50
33
6
0
60
1.21
4566--4654
22
3.9
23
80
8
76
38
1
0
60
1.04
4582--4654
11
6.6
11
78
9
78
35
1
0
63
1.04
4589--4654
22
3.0
22
84
10
89
34
1
0
63
1.04
5215--5263
18
2.7
18
82
17
66
44
0
0
55
0.99
5639--5671
18
1.9
18
88
11
52
42
0
0
57
0.98
8012--8052
20
2.2
19
86
8
57
70
2
0
26
0.99
14580--14612
2
17.0
2
93
6
59
48
0
0
51
1.00
15964--16035
30
2.4
28
77
13
72
44
0
0
55
0.99
16618--16657
21
1.9
21
90
10
64
40
0
0
60
0.97
22768--22817
18
2.9
16
80
13
55
50
0
0
50
1.00
23131--23177
5
10.2
5
86
13
66
65
0
0
34
0.93
23129--23177
17
2.7
19
87
12
68
65
0
0
34
0.93
23129--23184
19
3.0
20
80
19
68
66
0
0
33
0.92
23283--23426
8
16.0
9
65
24
56
52
0
1
45
1.14
23293--23345
20
2.7
20
77
14
65
54
0
0
45
0.99
23368--23400
15
2.2
15
94
0
57
51
0
0
48
1.00
23375--23427
28
2.0
26
85
7
70
52
0
0
47
1.00
23725--23763
17
2.4
16
83
8
51
20
2
0
76
0.90
24163--24192
3
10.0
3
100
0
60
66
0
0
33
0.92
25594--25648
16
3.6
16
80
9
78
36
3
5
54
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25592--25653
30
2.1
30
100
0
124
37
3
8
51
1.48
28603--28660
21
2.7
22
71
5
57
53
0
0
46
1.00
28580--28650
28
2.6
27
82
10
74
50
0
0
49
1.00
29100--29151
21
2.5
20
85
11
70
61
3
0
34
1.14
29250--29294
18
2.5
18
79
10
56
46
2
0
51
1.13

Tables:   1

The End!