genome.fa.s1552.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1552
Parameters: 2 7 7 80 10 50 1000
Length:  22342

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6941--7060	52	2.3	52	95	0	213	30	17	18	34	1.94
6941--7080	52	2.7	51	88	4	201	31	17	18	32	1.94
7069--7093	13	1.9	13	100	0	50	36	16	16	32	1.90
7134--7200	33	2.0	33	88	0	98	40	13	11	34	1.81
7156--7180	13	1.9	13	100	0	50	32	16	16	36	1.90
7238--7279	21	2.0	21	90	0	66	35	14	14	35	1.86
7416--7664	55	4.5	55	86	1	347	20	22	29	27	1.99
7416--7655	110	2.2	110	91	1	392	19	23	29	27	1.98
7581--7817	94	2.5	94	93	2	406	24	20	30	24	1.99
7768--7957	55	3.4	55	83	7	240	22	20	28	28	1.99
7977--8743	55	13.5	55	85	7	936	22	20	29	26	1.99
7885--8060	94	1.9	94	90	2	282	24	19	30	25	1.98
7977--8743	115	6.7	113	85	8	915	22	20	29	26	1.99
7977--8711	393	1.9	395	90	2	1192	22	21	29	27	1.99
7977--8712	170	4.3	166	89	4	997	22	21	29	27	1.99
9683--9923	79	3.1	78	89	4	376	31	14	25	27	1.95
9875--9950	27	2.8	28	84	9	95	22	19	32	25	1.97
11165--11300	35	3.9	34	98	1	254	19	30	5	44	1.74
11291--11330	14	2.9	13	82	10	53	22	0	0	77	0.77
12178--12624	31	14.2	31	84	7	528	22	31	14	31	1.94
12182--12624	95	4.7	93	83	7	529	22	31	15	30	1.95
12178--12625	126	3.5	126	88	2	625	22	31	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12704--12808	27	3.9	27	91	0	165	20	40	15	24	1.91
12660--12817	54	2.7	60	76	16	175	20	36	13	29	1.90
12842--12908	33	2.0	33	97	0	125	28	34	17	19	1.95
12964--13901	49	19.6	49	77	9	826	24	25	17	31	1.97
13009--13153	39	3.5	39	70	17	128	26	26	20	26	1.99
12908--13694	88	8.4	90	89	3	857	25	25	18	30	1.98
13128--13892	101	7.8	100	87	2	897	24	25	17	32	1.97
13136--13892	150	5.2	148	81	6	819	24	25	17	32	1.97
13798--13896	52	1.9	52	91	0	162	26	23	16	34	1.95
14664--14729	33	2.0	33	88	5	98	31	15	13	39	1.86
14663--14729	20	3.7	20	69	29	60	32	14	13	38	1.86
21840--21882	13	3.5	12	84	12	52	81	13	4	0	0.84
21838--21884	21	2.2	21	80	0	58	82	12	4	0	0.80

Tables:   1

The End!