Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1555
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 351839
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34
File 1 of 3
Found at i:320 original size:21 final size:21
Alignment explanation
Indices: 270--318 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
260 TATGCAAGTT
*
270 TTTATTTTC-TTAGCTAACTC
1 TTTATTTTCATTAGCCAACTC
*
290 ATTATTTTCATTAGCCAACTTC
1 TTTATTTTCATTAGCCAAC-TC
312 TTTATTT
1 TTTATTT
319 CAACTTGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.33
21 8 0.33
22 8 0.33
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.55
Consensus pattern (21 bp):
TTTATTTTCATTAGCCAACTC
Found at i:2553 original size:13 final size:13
Alignment explanation
Indices: 2535--2560 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2525 TAATTTTTTG
2535 TGTATCGATACAT
1 TGTATCGATACAT
2548 TGTATCGATACAT
1 TGTATCGATACAT
2561 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2627 original size:21 final size:21
Alignment explanation
Indices: 2599--2674 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
2589 CTGCCAAGAA
*
2599 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACATCTTTTTC
* ****
2620 AGGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2640 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2661 ATGTATCGATACAT
1 ATGTATCGATACAT
2675 TGCAACATGT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
20 14 0.33
21 29 0.67
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2647 original size:20 final size:20
Alignment explanation
Indices: 2622--2692 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
2612 TCTTTTTTAG
2622 GTATCGATACATTGCAACAT
1 GTATCGATACATTGCAACAT
****
2642 GTATCGATACATCTTTTTCAT
1 GTATCGATACAT-TGCAACAT
2663 GTATCGATACATTGCAACAT
1 GTATCGATACATTGCAACAT
2683 GTATCGATAC
1 GTATCGATAC
2693 TTTGAATTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 26 0.62
21 16 0.38
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
GTATCGATACATTGCAACAT
Found at i:2656 original size:41 final size:41
Alignment explanation
Indices: 2599--2692 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
2589 CTGCCAAGAA
*
2599 ATGTATCGATACATCTTTTTTAGGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCAGGTATCGATACATTGCAAC
*
2640 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCAGGTATCGATACATTGCAAC
2681 ATGTATCGATAC
1 ATGTATCGATAC
2693 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCAGGTATCGATACATTGCAAC
Found at i:3875 original size:474 final size:470
Alignment explanation
Indices: 3021--4204 Score: 1563
Period size: 474 Copynumber: 2.5 Consensus size: 470
3011 AAGAAACAAT
* ** * *
3021 CTTTGATTCTATCAAAAACAATGGAAAGAAAACCTTTTCTTGCGACCCCAAAGCATCAATCTCAT
1 CTTTGATTCAATCAAAAACAGGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATATCAT
*
3086 GTATCATAATGAAGGGAATATGTT-TTGGGTTCCCAATCTTGAAAAGAATGGAGACTATCATGAG
66 GTAT-ATAATGAAGGGAATGTGTTCTT-GGTTCCCAATCTTGAAAAGAATGGAGACTATCATGAG
** * *
3150 AATTGATGCCTATCATATTTAAGGGATGAATTTTTG-TTTTATTGAAAA-ACGAGCAAAAAATGA
129 AATCAATGCCTATCATATTTAAGGGATGAA--TTTGATTTTA-GGAAAATAAG-GCAAAAAA-GA
* * * * * *
3213 -TTTCATTACAGAA-AAAATCATGAATATCATTTATCATAATGAAGAAAATGTGTTCATAGTGCC
189 TTTTCA-TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTATTCATAGTGCC
* * *
3276 TAATCACAAAATGAATGAAGATCATTACTAGAACCATGTTTGTCTCATTTGATGCACAAGCTTAG
253 TAATCACAAAATGAATGAAGATCATTACTAGAACCAAGTTTGTCTCATTTGAAGCACAAACTTAG
* * * * **
3341 ATTTCACAAAACTTGGTGGGAAGAAAGCCTTTCTTGTGAAACTAAAGAATCAAAATCGTGTATCC
318 ACTGCACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACTAAAGAATCAAAATCGTGTATCC
* * *
3406 TTATGTGAAGACTATGTTTATGGTGCCTAATCCTGATAAGAATATAGATTAGTATGACTATTCAT
383 TTATGTGAAGAATATGTTTATGGTGCCTAATCCTGATAAAAATAGAGATTAGTATGACTATTCAT
3471 GTTCATCTTATTTAAAAGATAAA
448 GTTCATCTTATTTAAAAGATAAA
* * * *
3494 CTTTGATTCAATCAAAAACAGGGGAAAAAAAACCTTTTCTTGTGACGCCAAAGCCTCAATATCAT
1 CTTTGATTCAATCAAAAACAGGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATATCAT
** * * *
3559 GTATATTGTTGAAGGGAATGTGTTCCTGGTTCCCAATCTTAAAAAGAATGGAGACTATTATGAGA
66 GTATA-TAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATCATGAGA
* ** * * * *
3624 ATCAATGCTTGCCTTGTTCAAGGGATGAACATTGATTTTGAGGAAAATAAGGCAAAGAAAGATTT
130 ATCAATGCCTATCATATTTAAGGGATGAA-TTTGATTTT-AGGAAAATAAGGCAAA-AAAGATTT
* *
3689 TCATGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAATGTATTCATAGTGCCTAAT
192 TCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTATTCATAGTGCCTAAT
3754 CACAAAATGAATGAAGATCATTACTAGAACCAAGTTTGTCTCATTTGAAGCACAAACTTAGACTG
257 CACAAAATGAATGAAGATCATTACTAGAACCAAGTTTGTCTCATTTGAAGCACAAACTTAGACTG
* * *
3819 CACAAAAATTGTTGGAAAGAAAGCCTTTCTTGCAAAACTAAAGCATCAATATCGTGTATCCTTAT
322 CACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACTAAAGAATCAAAATCGTGTATCCTTAT
* * * *
3884 GTGAAGAATATGTTTATGGTGCCTAATCTTGATAAAAATGGGGATTAGTATGACTATTCATGTTT
387 GTGAAGAATATGTTTATGGTGCCTAATCCTGATAAAAATAGAGATTAGTATGACTATTCATGTTC
* *
3949 GTCTTATTTAAGAGATAAA
452 ATCTTATTTAAAAGATAAA
** *
3968 CTTTGATTCAATCAAAAATGGGGGAAAGAAAACCTTTTCTTGCGACACTAAAGCATCAATATCAT
1 CTTTGATTCAATCAAAAACAGGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATATCAT
* * * * *
4033 GTATGGTAATGAA-GGAAAGTGTTCTTGGTT-CCAATCTTGAAAAGAATGAAGACTGTCACGAGA
66 GTAT-ATAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATCATGAGA
* * *
4096 ATCAAAGCCTATCATATTTAAGGGATGAATTTTATTTTAAGGAAAATCAGGCAAAAAAAGATTTT
130 ATCAATGCCTATCATATTTAAGGGATGAATTTGATTTT-AGGAAAATAAGGC-AAAAAAGATTTT
* * *
4161 CGTGCAAAGGATAATCATCAATATCATTTATCCTAATGAAGAGA
193 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGA
4205 GTGTGTTTAC
Statistics
Matches: 613, Mismatches: 88, Indels: 22
0.85 0.12 0.03
Matches are distributed among these distances:
471 67 0.11
472 57 0.09
473 169 0.28
474 320 0.52
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (470 bp):
CTTTGATTCAATCAAAAACAGGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAATATCAT
GTATATAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTATCATGAGAA
TCAATGCCTATCATATTTAAGGGATGAATTTGATTTTAGGAAAATAAGGCAAAAAAGATTTTCAT
GCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTATTCATAGTGCCTAATCACA
AAATGAATGAAGATCATTACTAGAACCAAGTTTGTCTCATTTGAAGCACAAACTTAGACTGCACA
AAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACTAAAGAATCAAAATCGTGTATCCTTATGTGA
AGAATATGTTTATGGTGCCTAATCCTGATAAAAATAGAGATTAGTATGACTATTCATGTTCATCT
TATTTAAAAGATAAA
Found at i:4528 original size:13 final size:13
Alignment explanation
Indices: 4510--4535 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4500 ACATAAGTGT
4510 TGTATCGATCCAA
1 TGTATCGATCCAA
4523 TGTATCGATCCAA
1 TGTATCGATCCAA
4536 AGTTGCCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATCCAA
Found at i:11601 original size:6 final size:6
Alignment explanation
Indices: 11586--11634 Score: 68
Period size: 6 Copynumber: 8.5 Consensus size: 6
11576 GAGTTCCTTT
11586 AAAA-A AAAACA AAAACA AAAACA AAAACA AAAA-A AAAACA TAAAA-A
1 AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA AAAACA -AAAACA
11632 AAA
1 AAA
11635 GAGTGCAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
5 12 0.29
6 25 0.61
7 4 0.10
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (6 bp):
AAAACA
Found at i:11605 original size:11 final size:11
Alignment explanation
Indices: 11586--11634 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
11576 GAGTTCCTTT
11586 AAAAA-AAAAC
1 AAAAACAAAAC
11596 AAAAACAAAAAC
1 AAAAAC-AAAAC
*
11608 AAAAACAAAAA
1 AAAAACAAAAC
11619 AAAAACATAAA-
1 AAAAACA-AAAC
11630 AAAAA
1 AAAAA
11635 GAGTGCAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
10 5 0.14
11 16 0.46
12 14 0.40
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (11 bp):
AAAAACAAAAC
Found at i:13030 original size:31 final size:30
Alignment explanation
Indices: 12901--13454 Score: 490
Period size: 31 Copynumber: 17.9 Consensus size: 30
12891 TCTTCAAATC
*
12901 TCTCTTCTCAAAGTCCACAACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
12931 TCTCTTCTCAAAGTCCACAACTTAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
12961 TCTCTTTTCTCAAAGTCCATGACTCAGTGGCA
1 TCTC--TTCTCAAAGTCCACGACTCAGTGGCA
* * *
12993 TCTCTTCCCAAAGTCCACAACTCAATGGCAA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGC-A
*
13024 TCTCTTCTCAAAGTCCATGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
13054 TCCTTTTCTTCCCAAAGTCCACGACTCAATGGCA
1 T-C---TCTTCTCAAAGTCCACGACTCAGTGGCA
* *
13088 TCTTTTCTTCAAAGTCCACGACTCAGT-GAA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * *
13118 TTCTCTTTTCTTAAGTCCACGACTCAATGGCA
1 -TCTCTTCTC-AAAGTCCACGACTCAGTGGCA
* * *
13150 TCCTTTTTTCAAAGTCCACGACTTAGTGGCAA
1 T-CTCTTCTCAAAGTCCACGACTCAGTGGC-A
*
13182 TCTCTTCTCAAAGTCCATGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
13212 TCT-TGTCCCAAAGTCCACGACTCAGTGGCA
1 TCTCT-TCTCAAAGTCCACGACTCAGTGGCA
* *
13242 TCCTTTTCTCAAAGTCCACAACTCAGTGGCA
1 T-CTCTTCTCAAAGTCCACGACTCAGTGGCA
*
13273 TCTCTTTTCTC-AAGTCTACGACTCAGTGGCA
1 TCTC--TTCTCAAAGTCCACGACTCAGTGGCA
* * * *
13304 TCTTTTTTTTCGAAA-TTCAAGACTCAGTGGCAA
1 TC--TCTTCTC-AAAGTCCACGACTCAGTGGC-A
* * *
13337 TCTCTTCTCAAAGTTCATGACTCATTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * *
13367 TCT-TGTCCCAAAGTCCATGACTCAGT-GCC
1 TCTCT-TCTCAAAGTCCACGACTCAGTGGCA
* * * *
13396 TCTTTTCTTCAAAGTTCACAACTCCGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * * * *
13427 TATCTTTTCTAGGTCCACGACTTAGTGG
1 TCTCTTCTCAAAGTCCACGACTCAGTGG
13455 TGTCGCAACG
Statistics
Matches: 429, Mismatches: 67, Indels: 56
0.78 0.12 0.10
Matches are distributed among these distances:
29 9 0.02
30 149 0.35
31 181 0.42
32 57 0.13
33 7 0.02
34 26 0.06
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (30 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCA
Found at i:17401 original size:49 final size:49
Alignment explanation
Indices: 17244--17620 Score: 409
Period size: 49 Copynumber: 7.6 Consensus size: 49
17234 CGAAGAATGA
* *** * *
17244 CAATGTGCTGATTCATGGCCAACGACATTAAACTTGAAGAAGAA--TGC
1 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTGC
** * * * * *
17291 CAATGTGCTGAGACAAGGCCATCGACATTGGGCTTAGGAATGTTAAAGATGC
1 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTA--AA-GATGAAGGTGC
* * * *
17343 CAATATGCTGATTCAACGCCAACGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTGC
*
17392 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAT-G--AAGGTGC
* *
17444 CAATGTGCTGATTCAAGGCCAACGAAATTGGTCTTACAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTGC
* *
17493 CAATGTGCAGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGCTGC
1 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTGC
* * * * *
17542 CAATATGCTGATTCAAGGCCAGCGACATTAGTCTTAGAGA-CAAGGTGC
1 CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTGC
* * *
17590 CAATATGCTGATTCAAGGCCAGCGATATTGG
1 CAATGTGCTGATTCAAGGCCAACGACATTGG
17621 GCTTGTGCCA
Statistics
Matches: 280, Mismatches: 42, Indels: 15
0.83 0.12 0.04
Matches are distributed among these distances:
47 28 0.10
48 35 0.12
49 133 0.47
50 6 0.02
51 1 0.00
52 77 0.28
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGGTGC
Found at i:17418 original size:101 final size:98
Alignment explanation
Indices: 17244--17624 Score: 410
Period size: 101 Copynumber: 3.9 Consensus size: 98
17234 CGAAGAATGA
* * * * * **
17244 CAATGTGCTGATTCATGGCCAACGACATTAAACTTGAAGAAGAA--TGCCAATGTGCTGAGACAA
1 CAATATGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
*
17307 GGCCATCGACATTGGGCTTAGGAATGTTAAAGATGC
66 GGCCAGCGACATTGGGCTTA--AATGTT-AAGATGC
* * *
17343 CAATATGCTGATTCAACGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* *
17408 GGCCAGCGACATTGGTCTTAAAGATGGTTAAGGTGC
66 GGCCAGCGACATTGGGCTT-AA-AT-GTTAAGATGC
* * * * * *
17444 CAATGTGCTGATTCAAGGCCAACGAAATTGGTCTTACAGATGAAGGTGCCAATGTGCAGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
* * * *
17509 GGCCAACGACATTGGTCTTAAA-GATGAAGCTGC
66 GGCCAGCGACATTGGGCTTAAATG-TTAAGATGC
* * * * *
17542 CAATATGCTGATTCAAGGCCAGCGACATTAGTCTTAGAGA-CAAGGTGCCAATATGCTGATTCAA
1 CAATATGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
*
17606 GGCCAGCGATATTGGGCTT
66 GGCCAGCGACATTGGGCTT
17625 GTGCCAATGT
Statistics
Matches: 243, Mismatches: 33, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
97 38 0.16
98 42 0.17
99 37 0.15
100 3 0.01
101 119 0.49
102 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (98 bp):
CAATATGCTGATTCAAGGCCAACGACATTAGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
GGCCAGCGACATTGGGCTTAAATGTTAAGATGC
Found at i:17523 original size:150 final size:146
Alignment explanation
Indices: 17340--17620 Score: 409
Period size: 150 Copynumber: 1.9 Consensus size: 146
17330 ATGTTAAAGA
* * * *
17340 TGCCAATATGCTGATTCAACGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATT
1 TGCCAATATGCAGATTCAACGCCAACGACATTGGACTTAAAGATGAAGCTGCCAATATGCTGATT
* ** *
17405 CAAGGCCAGCGACATTGGTCTTAAAGATGGTTAAGGTGCCAATGTGCTGATTCAAGGCCAACGAA
66 CAAGGCCAGCGACATTAGTCTT--AGA--GACAAGGTGCCAATATGCTGATTCAAGGCCAACGAA
17470 ATTGGTCTTACAGATGAAGG
127 ATTGGTCTTACAGATGAAGG
* * *
17490 TGCCAATGTGCAGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAGCTGCCAATATGCTGATT
1 TGCCAATATGCAGATTCAACGCCAACGACATTGGACTTAAAGATGAAGCTGCCAATATGCTGATT
* *
17555 CAAGGCCAGCGACATTAGTCTTAGAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTG
66 CAAGGCCAGCGACATTAGTCTTAGAGACAAGGTGCCAATATGCTGATTCAAGGCCAACGAAATTG
17620 G
131 G
17621 GCTTGTGCCA
Statistics
Matches: 118, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
146 36 0.31
148 3 0.03
150 79 0.67
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (146 bp):
TGCCAATATGCAGATTCAACGCCAACGACATTGGACTTAAAGATGAAGCTGCCAATATGCTGATT
CAAGGCCAGCGACATTAGTCTTAGAGACAAGGTGCCAATATGCTGATTCAAGGCCAACGAAATTG
GTCTTACAGATGAAGG
Found at i:18397 original size:13 final size:13
Alignment explanation
Indices: 18379--18404 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
18369 CATTTTATGG
18379 TGTATCGATACAT
1 TGTATCGATACAT
18392 TGTATCGATACAT
1 TGTATCGATACAT
18405 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:18401 original size:33 final size:32
Alignment explanation
Indices: 18359--18422 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
18349 TACAAGCCAA
*
18359 TGTATCGATACAT-TTTATGGTGTATCGATACAT
1 TGTATCGATACATACTT-T-GTGTATCGATACAT
18392 TGTATCGATACATACTTTGTGTATCGATACA
1 TGTATCGATACATACTTTGTGTATCGATACA
18423 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 13 0.45
33 14 0.48
34 2 0.07
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (32 bp):
TGTATCGATACATACTTTGTGTATCGATACAT
Found at i:18519 original size:33 final size:33
Alignment explanation
Indices: 18477--18542 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
18467 TCTTTTTCAA
18477 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
* **
18510 GTATTGATACTGTGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
18543 TAAATGTGGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:20996 original size:13 final size:13
Alignment explanation
Indices: 20978--21016 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
20968 ATAATCCCCC
*
20978 TGTATCGATACAG
1 TGTATCGATACAA
20991 TGTATCGATACAA
1 TGTATCGATACAA
21004 TGTATCGATACAA
1 TGTATCGATACAA
21017 AGAATGATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:27335 original size:13 final size:13
Alignment explanation
Indices: 27317--27341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27307 ACAATGCAAC
27317 ATGTATCGATACA
1 ATGTATCGATACA
27330 ATGTATCGATAC
1 ATGTATCGATAC
27342 TGTGCAACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:27336 original size:33 final size:33
Alignment explanation
Indices: 27299--27364 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
27289 TCTTTTTCAA
27299 GTATCGATACAATGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
**
27332 GTATCGATACTGTGCAACATGTATCGATACAAT
1 GTATCGATACAATGCAACATGTATCGATACAAT
27365 TAAATGTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (33 bp):
GTATCGATACAATGCAACATGTATCGATACAAT
Found at i:27771 original size:87 final size:87
Alignment explanation
Indices: 27653--28244 Score: 787
Period size: 87 Copynumber: 6.8 Consensus size: 87
27643 GATCCTAACA
* * * * *
27653 AAGGCCAACAACAGTGGTCTTAAAGACAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTAG
1 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGG
27718 GCTTATGCCAATGTGCTGATTC
66 GCTTATGCCAATGTGCTGATTC
27740 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATG-TTCATTCAAGGCCAGCGATATTG
1 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTT-ATTCAAGGCCAGCGATATTG
27804 GGCTTATGCCAATGTGCTGATTC
65 GGCTTATGCCAATGTGCTGATTC
* **
27827 AAGGCCAGCGACATTGGTCTTAAAGACAAGGTGGTAATATG-TTGATTCAAGGCCAGCGATATTG
1 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTT-ATTCAAGGCCAGCGATATTG
*
27891 GGCTTGA-GCCAATGTGCTGATTT
65 GGCTT-ATGCCAATGTGCTGATTC
* * * *
27914 AAGGCCAACGACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGG
* *
27979 GCTTACGCTAATGTGCTGATTC
66 GCTTATGCCAATGTGCTGATTC
* * * *
28001 AAGGCTAGTGACATTGGTCTTAGAGATAAGGTGCCAATATG-TTGATACAAGGCCAGCGATATTG
1 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTT-ATTCAAGGCCAGCGATATTG
* *
28065 GGCTTATGCTAATGTGCCGATTC
65 GGCTTATGCCAATGTGCTGATTC
* * * * * *
28088 AAGGCCAGTGACATTGGTCTTAGAGACAAGGCGCCAAAACGCTGATTCAAGGCCAACGATATTGG
1 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGG
* * * *
28153 GCTTGTGCCGATGTGCTAATTT
66 GCTTATGCCAATGTGCTGATTC
* * * * *
28175 AAGGCTAACAACATTGGTCTTAGAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGG
*
28240 ACTTA
66 GCTTA
28245 GAAGAAGACG
Statistics
Matches: 449, Mismatches: 50, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
86 4 0.01
87 442 0.98
88 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (87 bp):
AAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTGG
GCTTATGCCAATGTGCTGATTC
Found at i:27794 original size:48 final size:48
Alignment explanation
Indices: 27723--28246 Score: 240
Period size: 48 Copynumber: 11.9 Consensus size: 48
27713 ATTAGGCTTA
* * *
27723 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGG
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* *
27771 TGCCAATATGTTCATTCAAGGCCAGCGATATTGGGCTT-------A--
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* * * *
27810 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGG
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
** *
27858 TGGTAATATGTTGATTCAAGGCCAGCGATATTGGGCTT---G---A--
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* * * * * * *
27898 -GCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGATAAGG
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* *
27945 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT----AC----
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* * * * * * *
27985 -GCTAATGTGCTGATTCAAGGCTAGTGACATTGGTCTTAGAGATAAGG
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* * * *
28032 TGCCAATATGTTGATACAAGGCCAGCGATATTGGGCTTA-TG-CTAATG
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGAC-AAGG
* *
28079 TGCC--------GATTCAAGGCCAGTGACATTGGTCTTAGAGACAAGG
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* * * * * *
28119 CGCCAAAACGCTGATTCAAGGCCAACGATATTGGGCTT---------G
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* * * * * * * * * *
28158 TGCCGATGTGCTAATTTAAGGCTAACAACATTGGTCTTAGAGATAAGG
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
* * *
28206 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGA
1 TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGA
28247 AGAAGACGCC
Statistics
Matches: 350, Mismatches: 79, Indels: 94
0.67 0.15 0.18
Matches are distributed among these distances:
39 144 0.41
40 7 0.02
41 2 0.01
42 2 0.01
43 1 0.00
44 1 0.00
45 2 0.01
46 1 0.00
47 8 0.02
48 182 0.52
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
TGCCAATATGTTGATTCAAGGCCAGCGACATTGGGCTTAGAGACAAGG
Found at i:28117 original size:261 final size:261
Alignment explanation
Indices: 27653--28244 Score: 923
Period size: 261 Copynumber: 2.3 Consensus size: 261
27643 GATCCTAACA
* * * *
27653 AAGGCCAACAACAGTGGTCTTAAAGACAAGGTGCCAATATGCTTATTCAAGGCCAGCGATATTAG
1 AAGGCCAACAACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
*
27718 GCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGTT
66 GCTTACGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGTT
* *
27783 CATTCAAGGCCAGCGATATTGGGCTTATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
131 CATACAAGGCCAGCGATATTGGGCTTATGCCAATGTGCCGATTCAAGGCCAGCGACATTGGTCTT
* ** * * * * *
27848 AAAGACAAGGTGGTAATATGTTGATTCAAGGCCAGCGATATTGGGCTTGAGCCAATGTGCTGATT
196 AAAGACAAGGCGCCAAAACGCTGATTCAAGGCCAACGATATTGGGCTTGAGCCAATGTGCTAATT
27913 T
261 T
*
27914 AAGGCCAACGACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 AAGGCCAACAACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
* * * *
27979 GCTTACGCTAATGTGCTGATTCAAGGCTAGTGACATTGGTCTTAGAGATAAGGTGCCAATATGTT
66 GCTTACGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGTT
* * *
28044 GATACAAGGCCAGCGATATTGGGCTTATGCTAATGTGCCGATTCAAGGCCAGTGACATTGGTCTT
131 CATACAAGGCCAGCGATATTGGGCTTATGCCAATGTGCCGATTCAAGGCCAGCGACATTGGTCTT
* * *
28109 AGAGACAAGGCGCCAAAACGCTGATTCAAGGCCAACGATATTGGGCTTGTGCCGATGTGCTAATT
196 AAAGACAAGGCGCCAAAACGCTGATTCAAGGCCAACGATATTGGGCTTGAGCCAATGTGCTAATT
28174 T
261 T
* *
28175 AAGGCTAACAACATTGGTCTTAGAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
1 AAGGCCAACAACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
*
28240 ACTTA
66 GCTTA
28245 GAAGAAGACG
Statistics
Matches: 301, Mismatches: 30, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
261 301 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (261 bp):
AAGGCCAACAACATTGGTCTTAAAGATAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
GCTTACGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAGAGACAAGGTGCCAATATGTT
CATACAAGGCCAGCGATATTGGGCTTATGCCAATGTGCCGATTCAAGGCCAGCGACATTGGTCTT
AAAGACAAGGCGCCAAAACGCTGATTCAAGGCCAACGATATTGGGCTTGAGCCAATGTGCTAATT
T
Found at i:28328 original size:33 final size:32
Alignment explanation
Indices: 28275--28867 Score: 495
Period size: 33 Copynumber: 18.8 Consensus size: 32
28265 GTGTGCTTTT
* * *
28275 AAAGGTTGCCACTGACTTGTGGGCTTAAAAGGA
1 AAAGG-TGCCACGGAGTTGTGGACTTAAAAGGA
* *
28308 GAAAGATGCCATGGAGTTGTGGACTT---A--A
1 -AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
*
28336 AAAGGTGCCACAGAGTTGTGGACTTAAAA-G-
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
** *
28366 ---GGTGCCACGGAGTTGTCAACTTAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGG-A
* * *
28396 AAAGAATGCCACGGAGTCGTGGACTTAAAAAGA
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGA
* *
28429 AAAGGTGCCACGAAGTTGTGGACTTAAAAAGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
*
28461 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
28493 ACAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAAGG-A
* * *
28527 AAAGATGCCACAGAGTTGTGGACTTAAAAAGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
*
28559 ATAAGGTGCCATGGAGTTGTGGACTTAAAA-G-
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
28590 ---GGTGCCACGAAGTTGTGGGCTTTAAAGGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
28619 TCAAGAG-GCCACAGAGTTGTGGACTTAAAA-G-
1 -AAAG-GTGCCACGGAGTTGTGGACTTAAAAGGA
* *
28650 ---GGTGCCACAGAGTTATGGACTTAAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGG-A
*
28680 AAAGGGATGCCACGGA-TGTGTGGGCTTAAAAGGGA
1 AAA-GG-TGCCACGGAGT-TGTGGACTTAAAA-GGA
*
28715 AAAGGGGTGCCACGGAGTCGTGGACTTGAAAA-GA
1 AAA--GGTGCCACGGAGTTGTGGACTT-AAAAGGA
* *
28749 AAAGGTGCCACAGAGTTGTGGAATTAAAAGGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
28781 ACAAGGTGCCATGGAGATGTGGACTTAAAA-G-
1 A-AAGGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
28812 ---GCTGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGGA
28843 AAAGGTGCCACGGAGTTGTGGACTT
1 AAAGGTGCCACGGAGTTGTGGACTT
28868 TGAAAAGAGA
Statistics
Matches: 458, Mismatches: 57, Indels: 89
0.76 0.09 0.15
Matches are distributed among these distances:
26 1 0.00
27 105 0.23
28 6 0.01
29 4 0.01
30 2 0.00
31 4 0.01
32 84 0.18
33 149 0.33
34 54 0.12
35 39 0.09
36 10 0.02
ACGTcount: A:0.34, C:0.13, G:0.32, T:0.20
Consensus pattern (32 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:28391 original size:26 final size:27
Alignment explanation
Indices: 28314--28677 Score: 197
Period size: 27 Copynumber: 12.0 Consensus size: 27
28304 AGGAGAAAGA
* *
28314 TGCCATGGAGTTGTGGACTTAAAAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
*
28341 TGCCACAGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
** *
28368 TGCCACGGAGTTGTCAACTTAAAGGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
*
28400 AATGCCACGGAGTCGTGGACTTAAAAAGAAAAGG
1 --TGCCACGGAGTTGTGGACTT-AAAAG----GG
*
28434 TGCCACGAAGTTGTGGACTTAAAAAGAAAAGG
1 TGCCACGGAGTTGTGGACTT-AAAAG----GG
*
28466 TGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
1 TGCCACGGAGTTGTGGACTTAAAA-G-----GG
28499 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
*
28531 ATGCCACAGAGTTGTGGACTTAAAAAGAATAAGG
1 -TGCCACGGAGTTGTGGACTT-AAAAG-----GG
*
28565 TGCCATGGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGG
* * *
28592 TGCCACGAAGTTGTGGGCTTTAAAGGATCAAG
1 TGCCACGGAGTTGTGGACTTAAAAGG-----G
* *
28624 AGGCCACAGAGTTGTGGACTTAAAAGGG
1 -TGCCACGGAGTTGTGGACTTAAAAGGG
* *
28652 TGCCACAGAGTTATGGACTTAAAAGG
1 TGCCACGGAGTTGTGGACTTAAAAGG
28678 AAAAAGGGAT
Statistics
Matches: 276, Mismatches: 29, Indels: 64
0.75 0.08 0.17
Matches are distributed among these distances:
27 95 0.34
28 1 0.00
31 4 0.01
32 60 0.22
33 86 0.31
34 24 0.09
35 4 0.01
39 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.21
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGG
Found at i:28454 original size:66 final size:65
Alignment explanation
Indices: 28275--28928 Score: 485
Period size: 60 Copynumber: 10.3 Consensus size: 65
28265 GTGTGCTTTT
* * * * * *
28275 AAAGGTTGCCACTGACTTGTGGGCTTAAAAGGAGAAAGATGCCATGGAGTTGTGGACTT------
1 AAAGG-TGCCACGGAGTTGTGGACTTAAAAAGA-AAAGGTGCCACGGAGTTGTGGACTTAAAAGG
28334 AA
64 AA
* ** *
28336 AAAGGTGCCACAGAGTTGTGGACTT-AAAAG----GGTGCCACGGAGTTGTCAACTTAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
* * * *
28396 AAAGAATGCCACGGAGTCGTGGACTTAAAAAGAAAAGGTGCCACGAAGTTGTGGACTTAAAAAG-
1 AAAG-GTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
28460 A
65 A
* *
28461 AAAGGTGCCACGAAGTTGTGGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA-AAGGTGCCACGGAGTTGTGGACTTAAAAGGA
28526 A
65 A
* * *
28527 AAAGATGCCACAGAGTTGTGGACTTAAAAAGAATAAGGTGCCATGGAGTTGTGGACTTAAAA-G-
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAA-AAGGTGCCACGGAGTTGTGGACTTAAAAGGA
28590 -
65 A
* * * * * *
28590 ---GGTGCCACGAAGTTGTGGGCTTTAAAGGATCAAGAG-GCCACAGAGTTGTGGACTTAAAA-G
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGA-AAAG-GTGCCACGGAGTTGTGGACTTAAAAGG
28650 --
64 AA
* * * *
28650 ---GGTGCCACAGAGTTATGGACTTAAAAGGAAAAAGGGATGCCACGGA-TGTGTGGGCTTAAAA
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAG-AAAA-GG-TGCCACGGAGT-TGTGGACTTAAAA
28711 GGGAA
62 -GGAA
* * * * *
28716 AAGGGGTGCCACGGAGTCGTGGACTTGAAAAGAAAAGGTGCCACAGAGTTGTGGAATTAAAAGGA
1 AA-AGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
28781 A
65 A
* * * * *
28782 CAAGGTGCCATGGAGATGTGGACTT-AAAAG----GCTGCCACGGAGTTGTGGGCTTTGAAAA-G
1 AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGAC-TT-AAAAGG
28841 AA
64 AA
* * * ** ** *
28843 AAAGGTGCCACGGAGTTGTGGACTTTGAAAAG-AGA-TTGCCACTAAGTCATGGACTAAAAAGGA
1 AAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGA
28906 A
65 A
*
28907 AAAGAGTGGCACGGAGTTGTGG
1 AAAG-GTGCCACGGAGTTGTGG
28929 GCTTTAAGAG
Statistics
Matches: 481, Mismatches: 73, Indels: 74
0.77 0.12 0.12
Matches are distributed among these distances:
54 18 0.04
59 4 0.01
60 113 0.23
61 52 0.11
62 30 0.06
63 9 0.02
64 39 0.08
65 82 0.17
66 85 0.18
67 19 0.04
68 3 0.01
69 4 0.01
70 23 0.05
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (65 bp):
AAAGGTGCCACGGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGAA
Found at i:28630 original size:93 final size:94
Alignment explanation
Indices: 28402--28928 Score: 338
Period size: 93 Copynumber: 5.5 Consensus size: 94
28392 GGAAAAAGAA
* * *
28402 TGCCACGGAGTCGTGGACTTAAAAAG-AAAAG-GTGCCAC-GAAGTTGTGGACTTAAAAAGAAAA
1 TGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAG-GCCACAG-AGTTGTGGACTTAAAAAGAAAA
28464 GGTGCCACGAAGTTGTGGACTTAAAAGGAACAAGG
64 GGTGCCACGAAGTTGTGGACTTAAAAGG----AGG
* *
28499 TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGATGCCACAGAGTTGTGGACTTAAAAAGAATAAG
1 TGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGGCCACAGAGTTGTGGACTTAAAAAGAA-AAG
* *
28564 GTGCCATGGAGTTGTGGACTTAAAA-G-GG
65 GTGCCACGAAGTTGTGGACTTAAAAGGAGG
* * **
28592 TGCCACGAAGTTGTGGGCTTTAAAGGATCAAGAGGCCACAGAGTTGTGGACTT-AAAAG----GG
1 TGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGGCCACAGAGTTGTGGACTTAAAAAGAAAAGG
*
28652 TGCCAC-AGAGTTATGGACTTAAAAGGAAAAAGGG
66 TGCCACGA-AGTTGTGGACTTAAAAGG----A-GG
* * * * * * *
28686 ATGCCACGGA-TGTGTGGGCTTAAAAGGGAAAAGGGGTGCCACGGAGTCGTGGACTTGAAAAGAA
1 -TGCCACGAAGT-TGTGGACTTAAAA-GGAAAAAGAG-GCCACAGAGTTGTGGACTTAAAAAGAA
*
28750 AAGGTGCCAC-AGAGTTGTGGAATTAAAAGGAACAAGG
62 AAGGTGCCACGA-AGTTGTGGACTTAAAAGG----AGG
* * * ** * * *
28787 TGCCATGGAGATGTGGACTTAAAA-G-----GCTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
1 TGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGGCCACAGAGTTGTGGAC-TTAAAAAG-AAAA
* *
28846 GGTGCCACGGAGTTGTGGACTTTGAAAA-GAGAT
64 GGTGCCACGAAGTTGTGGAC-TT-AAAAGGAG-G
* ** * * *
28879 TGCCACTAAGTCATGGACTAAAAAGGAAAAAGAGTGGCACGGAGTTGTGG
1 TGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAG-GCCACAGAGTTGTGG
28929 GCTTTAAGAG
Statistics
Matches: 350, Mismatches: 45, Indels: 68
0.76 0.10 0.15
Matches are distributed among these distances:
87 22 0.06
88 1 0.00
91 2 0.01
92 37 0.11
93 59 0.17
94 24 0.07
95 23 0.07
96 10 0.03
97 41 0.12
98 38 0.11
99 41 0.12
100 20 0.06
101 2 0.01
102 30 0.09
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (94 bp):
TGCCACGAAGTTGTGGACTTAAAAGGAAAAAGAGGCCACAGAGTTGTGGACTTAAAAAGAAAAGG
TGCCACGAAGTTGTGGACTTAAAAGGAGG
Found at i:28853 original size:34 final size:35
Alignment explanation
Indices: 28807--28875 Score: 122
Period size: 34 Copynumber: 2.0 Consensus size: 35
28797 ATGTGGACTT
*
28807 AAAAGGCTGCCACGGAGTTGTGGGCTTTGAAAAGA
1 AAAAGGCTGCCACGGAGTTGTGGACTTTGAAAAGA
28842 AAAAGG-TGCCACGGAGTTGTGGACTTTGAAAAGA
1 AAAAGGCTGCCACGGAGTTGTGGACTTTGAAAAGA
28876 GATTGCCACT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 27 0.82
35 6 0.18
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.20
Consensus pattern (35 bp):
AAAAGGCTGCCACGGAGTTGTGGACTTTGAAAAGA
Found at i:28966 original size:27 final size:27
Alignment explanation
Indices: 28935--29008 Score: 103
Period size: 27 Copynumber: 2.7 Consensus size: 27
28925 GTGGGCTTTA
*
28935 AGAGTTGTGGACTTAAAAGGGTGCCAT
1 AGAGTTGTGGACTTAAAAGGGTGCCAC
* * *
28962 GGAGTCGTAGACTTAAAAGGGTGCCAC
1 AGAGTTGTGGACTTAAAAGGGTGCCAC
*
28989 AGAGTTATGGACTTAAAAGG
1 AGAGTTGTGGACTTAAAAGG
29009 AAAAAGAGAT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.32, C:0.12, G:0.32, T:0.23
Consensus pattern (27 bp):
AGAGTTGTGGACTTAAAAGGGTGCCAC
Found at i:29101 original size:31 final size:31
Alignment explanation
Indices: 29015--29740 Score: 740
Period size: 31 Copynumber: 23.6 Consensus size: 31
29005 AAGGAAAAAG
* *
29015 AGATGCCAC-GAAGTCGTGGACTTTG-GGAAG
1 AGATGCCACTG-AGTCGTGGACTTTGAAGAAA
* *
29045 GGATGCCACCGAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * * * *
29076 AAATACCCCAGAGTCATGGAATTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * **
29107 AGATGCCA-TGGAGTCGTGGACATTG-GGAGG
1 AGATGCCACT-GAGTCGTGGACTTTGAAGAAA
* *
29137 GGATGCCACCGAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * *
29168 AAATGCCACAGAGTCATGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * *
29199 TA-ATGCCACGGAGTCGTGGACTTTG-GGAAG
1 -AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * *
29229 GGATGCCTCCGAGTCATGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * *
29260 AAAAGCCACAGAGTTGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * *
29291 AGATGCCACTGAGTCGTGCACTTTG-GGAAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
29321 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* **
29352 AAATGCCACAAAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * *
29383 ATATGCCACTGAGCCGTGGACTTTG-GGAAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
*
29413 AGATGCCACTGAGTCATGGACTTTGAAGAAAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAG--AAA
*
29446 AGATGCCACTGAGTCATGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * *
29477 AGATGCCACTAAGTCATGGACTTTG-GGAAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
*
29507 AGATGCCACTGAGTCATGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
*
29538 A-ATGCCACAGAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * *
29568 ATATGCCACTGAGTCATGGACTTT-AGGAAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* *
29598 AGATGCCACTGAGTCCTGGACTTTAAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
*
29629 AAATGCCACTGAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * * *
29660 AGATGCCACTAAGTTGTGGACTTTG-GGGAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
*
29690 AGATGCCACTGAGTCATGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAA
* *
29721 A-ACTGCCACAGAGTCCTGGA
1 AGA-TGCCACTGAGTCGTGGA
29741 TGCCACTAAG
Statistics
Matches: 575, Mismatches: 104, Indels: 33
0.81 0.15 0.05
Matches are distributed among these distances:
30 226 0.39
31 318 0.55
32 1 0.00
33 30 0.05
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (31 bp):
AGATGCCACTGAGTCGTGGACTTTGAAGAAA
Found at i:29111 original size:92 final size:91
Alignment explanation
Indices: 29015--29740 Score: 988
Period size: 92 Copynumber: 7.9 Consensus size: 91
29005 AAGGAAAAAG
* * *
29015 AGATGCCACGAAGTCGTGGACTTTGGGAAGGGATGCCACCGAGTCGTGGACTTTGAAGAAAAAAT
1 AGATGCCACG-AGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAAT
* * * *
29080 ACCCCAGAGTCATGGAATTTGAAGAAA
65 GCCACAGAGTCGTGGACTTTGAAGAAA
* * * * * *
29107 AGATGCCATGGAGTCGTGGACATTGGGAGGGGATGCCACCGAGTCGTGGACTTTGAAGAAAAAAT
1 AGATGCCA-CGAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAAT
*
29172 GCCACAGAGTCATGGACTTTGAAGAAA
65 GCCACAGAGTCGTGGACTTTGAAGAAA
* * *
29199 TA-ATGCCACGGAGTCGTGGACTTTGGGAAGGGATGCCTCCGAGTCATGGACTTTGAAGAAAAAA
1 -AGATGCCAC-GAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAA
* *
29263 AGCCACAGAGTTGTGGACTTTGAAGAAA
64 TGCCACAGAGTCGTGGACTTTGAAGAAA
* *
29291 AGATGCCACTGAGTCGTGCACTTTGGGAAGAGATGCCACTGAGTCGTGGACTTTGAAGAAAAAAT
1 AGATGCCAC-GAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAAT
*
29356 GCCACAAAGTCGTGGACTTTGAAGAAA
65 GCCACAGAGTCGTGGACTTTGAAGAAA
* *
29383 ATATGCCACTGAGCCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAAG
1 AGATGCCAC-GAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAG-AAAAA-
* *
29448 ATGCCACTGAGTCATGGACTTTGAAGAAA
63 ATGCCACAGAGTCGTGGACTTTGAAGAAA
* *
29477 AGATGCCACTAAGTCATGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAG-AAAAAT
1 AGATGCCAC-GAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAAT
29541 GCCACAGAGTCGTGGACTTTGAAGAAA
65 GCCACAGAGTCGTGGACTTTGAAGAAA
* * * * *
29568 ATATGCCACTGAGTCATGGACTTTAGGAAGAGATGCCACTGAGTCCTGGACTTTAAAGAAAAAAT
1 AGATGCCAC-GAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAAT
*
29633 GCCACTGAGTCGTGGACTTTGAAGAAA
65 GCCACAGAGTCGTGGACTTTGAAGAAA
* * * *
29660 AGATGCCACTAAGTTGTGGACTTTGGGGAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAACT
1 AGATGCCAC-GAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAAT
*
29725 GCCACAGAGTCCTGGA
65 GCCACAGAGTCGTGGA
29741 TGCCACTAAG
Statistics
Matches: 574, Mismatches: 53, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
91 81 0.14
92 406 0.71
93 7 0.01
94 80 0.14
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (91 bp):
AGATGCCACGAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAAATG
CCACAGAGTCGTGGACTTTGAAGAAA
Found at i:29174 original size:61 final size:62
Alignment explanation
Indices: 29015--29740 Score: 740
Period size: 61 Copynumber: 11.8 Consensus size: 62
29005 AAGGAAAAAG
* ** *
29015 AGATGCCAC-GAAGTCGTGGACTTTG-GGAAGGGATGCCACCGAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTG-AGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * * * * * * **
29076 AAATACCCCAGAGTCATGGAATTTGAAGAAAAGATGCCA-TGGAGTCGTGGACATTG-GGAGG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACT-GAGTCGTGGACTTTGAAGAAA
* * * * *
29137 GGATGCCACCGAGTCGTGGACTTTGAAGAAAAAATGCCACAGAGTCATGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * ** * * *
29199 TA-ATGCCACGGAGTCGTGGACTTTG-GGAAGGGATGCCTCCGAGTCATGGACTTTGAAGAAA
1 -AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * * * * *
29260 AAAAGCCACAGAGTTGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGCACTTTG-GGAAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* **
29321 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAAATGCCACAAAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * * *
29383 ATATGCCACTGAGCCGTGGACTTTG-GGAAGAGATGCCACTGAGTCATGGACTTTGAAGAAAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAG--AAA
* * * * *
29446 AGATGCCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTAAGTCATGGACTTTG-GGAAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* *
29507 AGATGCCACTGAGTCATGGACTTTGAAGAAAA-ATGCCACAGAGTCGTGGACTTTGAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * * * *
29568 ATATGCCACTGAGTCATGGACTTT-AGGAAGAGATGCCACTGAGTCCTGGACTTTAAAGAAA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * * * * *
29629 AAATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTTGTGGACTTTG-GGGAG
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
* * *
29690 AGATGCCACTGAGTCATGGACTTTGAAGAAAA-ACTGCCACAGAGTCCTGGA
1 AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGA-TGCCACTGAGTCGTGGA
29741 TGCCACTAAG
Statistics
Matches: 548, Mismatches: 101, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
60 27 0.05
61 345 0.63
62 123 0.22
63 26 0.05
64 27 0.05
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.22
Consensus pattern (62 bp):
AGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAA
Found at i:29775 original size:30 final size:30
Alignment explanation
Indices: 29739--29864 Score: 144
Period size: 30 Copynumber: 4.1 Consensus size: 30
29729 CAGAGTCCTG
* *
29739 GATGCCACTAAGTCATGGACTTTGGGAAGA
1 GATGCCACTAAGTCGTGGACTTTGGGAAAA
*
29769 GATGCCACTAAGTCGTGGACTTTGAAGAAAAAA
1 GATGCCACTAAGTCGTGGACTTTG--G-GAAAA
* * **
29802 GATGCCACTGAGTTGTGGACTTTAAAGAAAA
1 GATGCCACTAAGTCGTGGACTTT-GGGAAAA
*
29833 GATGCCACTGAGTCGTGGACTTTGGGAAAA
1 GATGCCACTAAGTCGTGGACTTTGGGAAAA
29863 GA
1 GA
29865 GATTTGAAGA
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
30 30 0.37
31 26 0.32
32 1 0.01
33 24 0.30
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (30 bp):
GATGCCACTAAGTCGTGGACTTTGGGAAAA
Found at i:29810 original size:33 final size:33
Alignment explanation
Indices: 29739--29856 Score: 147
Period size: 31 Copynumber: 3.7 Consensus size: 33
29729 CAGAGTCCTG
* *
29739 GATGCCACTAAGTCATGGACTTTG--G-GAAGA
1 GATGCCACTAAGTCGTGGACTTTGAAGAGAAAA
*
29769 GATGCCACTAAGTCGTGGACTTTGAAGAAAAAA
1 GATGCCACTAAGTCGTGGACTTTGAAGAGAAAA
* *
29802 GATGCCACTGAGTTGTGGACTTT-AA-AGAAAA
1 GATGCCACTAAGTCGTGGACTTTGAAGAGAAAA
*
29833 GATGCCACTGAGTCGTGGACTTTG
1 GATGCCACTAAGTCGTGGACTTTG
29857 GGAAAAGAGA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
30 23 0.30
31 27 0.35
32 3 0.04
33 24 0.31
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (33 bp):
GATGCCACTAAGTCGTGGACTTTGAAGAGAAAA
Found at i:31143 original size:15 final size:15
Alignment explanation
Indices: 31125--31167 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
31115 TTTTTGTTGT
31125 TTTTTGTTTTTTTTC
1 TTTTTGTTTTTTTTC
*
31140 TTTTCT-TTCTTTTTC
1 TTTT-TGTTTTTTTTC
31155 TTTTTGTGTTTTT
1 TTTTTGT-TTTTT
31168 ACTTGTGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
14 1 0.04
15 17 0.74
16 5 0.22
ACGTcount: A:0.00, C:0.09, G:0.07, T:0.84
Consensus pattern (15 bp):
TTTTTGTTTTTTTTC
Found at i:33825 original size:7 final size:7
Alignment explanation
Indices: 33808--33850 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
33798 TTTGTGCATT
33808 TTTTTTG
1 TTTTTTG
*
33815 TTTTTGTT
1 TTTTT-TG
*
33823 TTTTTTA
1 TTTTTTG
33830 TTTTTTG
1 TTTTTTG
33837 TTTTTTG
1 TTTTTTG
33844 TGTTTTT
1 T-TTTTT
33851 ACTTTTGACT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
7 20 0.65
8 11 0.35
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (7 bp):
TTTTTTG
Found at i:33833 original size:23 final size:23
Alignment explanation
Indices: 33808--33850 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
33798 TTTGTGCATT
*
33808 TTTTTTG-TTTTTGTTTTTTTTA
1 TTTTTTGTTTTTTGTGTTTTTTA
33830 TTTTTTGTTTTTTGTGTTTTT
1 TTTTTTGTTTTTTGTGTTTTT
33851 ACTTTTGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.02, C:0.00, G:0.12, T:0.86
Consensus pattern (23 bp):
TTTTTTGTTTTTTGTGTTTTTTA
Found at i:33849 original size:16 final size:16
Alignment explanation
Indices: 33806--33850 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
33796 TTTTTGTGCA
33806 TTTTTTTTG-TTTTTG
1 TTTTTTTTGTTTTTTG
*
33821 TTTTTTTTATTTTTTG
1 TTTTTTTTGTTTTTTG
*
33837 TTTTTTGTGTTTTT
1 TTTTTTTTGTTTTT
33851 ACTTTTGACT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 8 0.31
16 18 0.69
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.87
Consensus pattern (16 bp):
TTTTTTTTGTTTTTTG
Found at i:33851 original size:22 final size:22
Alignment explanation
Indices: 33808--33856 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
33798 TTTGTGCATT
*
33808 TTTTTTGTTTTTGTTTTTTTTA
1 TTTTTTGTTTTTGTTGTTTTTA
33830 TTTTTTGTTTTT-TGTGTTTTTA
1 TTTTTTGTTTTTGT-TGTTTTTA
*
33852 CTTTT
1 TTTTT
33857 GACTTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 23 0.96
ACGTcount: A:0.04, C:0.02, G:0.10, T:0.84
Consensus pattern (22 bp):
TTTTTTGTTTTTGTTGTTTTTA
Found at i:33856 original size:16 final size:15
Alignment explanation
Indices: 33806--33850 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
33796 TTTTTGTGCA
33806 TTTTTTTTGTTTTTG
1 TTTTTTTTGTTTTTG
*
33821 TTTTTTTTATTTTTTG
1 TTTTTTTT-GTTTTTG
*
33837 TTTTTTGTGTTTTT
1 TTTTTTTTGTTTTT
33851 ACTTTTGACT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.02, C:0.00, G:0.11, T:0.87
Consensus pattern (15 bp):
TTTTTTTTGTTTTTG
Found at i:41286 original size:30 final size:30
Alignment explanation
Indices: 41190--41477 Score: 281
Period size: 30 Copynumber: 9.9 Consensus size: 30
41180 TAACCCTTCA
* * *
41190 AAAGCACACAAGTCAGTGGC-ATCTTTTTC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
*
41219 AAAGCCCACAAGTCAATGGCAACC--TT-C
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
* * * *
41246 AAAACCCACAAATCAGTGGCACCCTTGTCC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
*
41276 AAAGCCCACAAGTCAGTGGC-ACTCTTTTTC
1 AAAGCCCACAAGTCAGTGGCAAC-CTTTTCC
* * *
41306 AAAGCCCACAAATCAGTGGCACCCTTCTCCC
1 AAAGCCCACAAGTCAGTGGCAACCTT-TTCC
* *
41337 AAAGCCCACAGGTCAGTGGCAACC--TTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
*
41365 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
* * * *
41395 AAAGCCCATAAGTTAGTGCCAACC--TTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
* * * *
41423 AAAGCCCACAAGTTAGTGG-TATCTTTTCA
1 AAAGCCCACAAGTCAGTGGCAACCTTTTCC
41452 AAAGCCCACAAGTCAGTGGCAACCTT
1 AAAGCCCACAAGTCAGTGGCAACCTT
41478 CAAAAGCACA
Statistics
Matches: 210, Mismatches: 37, Indels: 23
0.78 0.14 0.09
Matches are distributed among these distances:
27 23 0.11
28 46 0.22
29 42 0.20
30 75 0.36
31 24 0.11
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCAACCTTTTCC
Found at i:41518 original size:57 final size:58
Alignment explanation
Indices: 41184--41492 Score: 385
Period size: 57 Copynumber: 5.3 Consensus size: 58
41174 TATTCCTAAC
* * * *
41184 CCTTCAAAAGCACACAAGTCAGTGGCA-TCTTTTTCAAAGCCCACAAGTCAATGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
* *
41241 CCTTCAAAA-CCCACAAATCAGTGGCACCCTTGTCCAAAGCCCACAAGTCAGTGGC-A
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
* * *
41297 CTCTTTTTC-AAAGCCCACAAATCAGTGGCACCCTTCTCCCAAAGCCCACAGGTCAGTGGCAA
1 C-C---TTCAAAAGCCCACAAGTCAGTGGCACCCTT-TTCCAAAGCCCACAAGTCAGTGGCAA
* * *
41359 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCATAAGTTAGTGCCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
* * * *
41417 CCTTCAAAAGCCCACAAGTTAGTGGTA-TCTTTTCAAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
*
41474 CCTTCAAAAGCACACAAGT
1 CCTTCAAAAGCCCACAAGT
41493 TGGTGCAACC
Statistics
Matches: 220, Mismatches: 23, Indels: 18
0.84 0.09 0.07
Matches are distributed among these distances:
56 17 0.08
57 77 0.35
58 49 0.22
59 28 0.13
60 25 0.11
61 22 0.10
62 2 0.01
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.20
Consensus pattern (58 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
Found at i:41527 original size:31 final size:28
Alignment explanation
Indices: 41355--41528 Score: 106
Period size: 28 Copynumber: 6.0 Consensus size: 28
41345 CAGGTCAGTG
**
41355 GCAACCTTCAAAAGCCCAC-AAGTCAGT
1 GCAACCTTCAAAAGCCCACAAAGTTGGT
* * * *
41382 GGCACCCTTTTCCAAAGCCCA-TAAGTTAGT
1 -GCAACC--TTCAAAAGCCCACAAAGTTGGT
*
41412 GCCAACCTTCAAAAGCCCAC-AAGTTAGT
1 G-CAACCTTCAAAAGCCCACAAAGTTGGT
* * * **
41440 GGTATCTTTTCAAAAGCCCAC-AAGTCAGT
1 -GCAAC-CTTCAAAAGCCCACAAAGTTGGT
*
41469 GGCAACCTTCAAAAGCACAC-AAGTTGGT
1 -GCAACCTTCAAAAGCCCACAAAGTTGGT
41497 GCAACCCTATCAAAAGCCCACATAAGTTGGT
1 GCAA-CCT-TCAAAAGCCCACA-AAGTTGGT
41528 G
1 G
41529 GCATCTTCAT
Statistics
Matches: 119, Mismatches: 16, Indels: 19
0.77 0.10 0.12
Matches are distributed among these distances:
27 4 0.03
28 47 0.39
29 37 0.31
30 22 0.18
31 9 0.08
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (28 bp):
GCAACCTTCAAAAGCCCACAAAGTTGGT
Found at i:41605 original size:49 final size:49
Alignment explanation
Indices: 41545--41716 Score: 203
Period size: 49 Copynumber: 3.6 Consensus size: 49
41535 TCATCTAAAT
* *
41545 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAATCAACATATTGGCACCGTCATCTTTAAGA
* * * *
41594 CCAATGTCGCTGGCCTTGAACCAACACATTGGCA----C--CTTTAAGT
1 CCAATATCGCTGGCCTTGAATCAACATATTGGCACCGTCATCTTTAAGA
* *
41637 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAACATATTGGCACCGTCATCTTTAAGA
* * *
41686 CCAATGTCGCTGGCCATGAAGCAACATATTG
1 CCAATATCGCTGGCCTTGAATCAACATATTG
41717 TCATTCTTCA
Statistics
Matches: 101, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
43 36 0.36
45 1 0.01
47 1 0.01
49 63 0.62
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (49 bp):
CCAATATCGCTGGCCTTGAATCAACATATTGGCACCGTCATCTTTAAGA
Found at i:41651 original size:43 final size:43
Alignment explanation
Indices: 41545--41672 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 43
41535 TCATCTAAAT
* * *
41545 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGC
1 CCAATATCGCTGGCCTTGAACCAACACATTGGCA----C--CTTTAAGC
* *
41594 CCAATGTCGCTGGCCTTGAACCAACACATTGGCACCTTTAAGT
1 CCAATATCGCTGGCCTTGAACCAACACATTGGCACCTTTAAGC
* * * *
41637 CCAATATCGTTGGCCTTGAATCAGCATATTGGCACC
1 CCAATATCGCTGGCCTTGAACCAACACATTGGCACC
41673 GTCATCTTTA
Statistics
Matches: 69, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
43 38 0.55
45 1 0.01
49 30 0.43
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (43 bp):
CCAATATCGCTGGCCTTGAACCAACACATTGGCACCTTTAAGC
Found at i:41711 original size:92 final size:92
Alignment explanation
Indices: 41544--41716 Score: 301
Period size: 92 Copynumber: 1.9 Consensus size: 92
41534 TTCATCTAAA
*
41544 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGCCCAATGTCGCTGGCC
1 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCC
*
41609 TTGAACCAACACATTGGCACCTTTAAG
66 ATGAACCAACACATTGGCACCTTTAAG
*
41636 TCCAATATCGTTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCC
1 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCC
* *
41701 ATGAAGCAACATATTG
66 ATGAACCAACACATTG
41717 TCATTCTTCA
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (92 bp):
TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCGTCATCTTTAAGACCAATGTCGCTGGCC
ATGAACCAACACATTGGCACCTTTAAG
Found at i:42505 original size:20 final size:21
Alignment explanation
Indices: 42459--42515 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
42449 ATTTCAACGA
*
42459 TTTGTATCGATACATAAAGTG
1 TTTGTATCGATACATAAAGTC
42480 TTTGTATCGATACACT-AA-TC
1 TTTGTATCGATACA-TAAAGTC
42500 TTTGTATCGATACATA
1 TTTGTATCGATACATA
42516 CAGGCAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
19 1 0.03
20 15 0.45
21 16 0.48
22 1 0.03
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (21 bp):
TTTGTATCGATACATAAAGTC
Found at i:42563 original size:52 final size:52
Alignment explanation
Indices: 42502--42630 Score: 195
Period size: 52 Copynumber: 2.5 Consensus size: 52
42492 CACTAATCTT
*
42502 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* * * *
42554 TGTAGCGATATATGCAGACAAATTTGCCTAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
42606 TGTATCAATACATGCAGGGAAATTT
1 TGTATCGATACATGCAGGCAAATTT
42631 TCATATTTCG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:56453 original size:13 final size:12
Alignment explanation
Indices: 56435--56488 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
56425 CCAAATAAAC
56435 AAAAAAAAGAAGA
1 AAAAAAAAGAA-A
*
56448 AAAAAACA-AAA
1 AAAAAAAAGAAA
* *
56459 AACAAAAACAAA
1 AAAAAAAAGAAA
*
56471 AAAACAAAGAAA
1 AAAAAAAAGAAA
56483 AAAAAA
1 AAAAAA
56489 CAAAAACAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
11 7 0.21
12 19 0.58
13 7 0.21
ACGTcount: A:0.87, C:0.07, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:56459 original size:35 final size:35
Alignment explanation
Indices: 56420--56509 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
56410 GTCCTCCAAA
*
56420 AAAAACCAAATAA-ACAAAAA-AAAGAAGAAAAAAAC
1 AAAAACCAAA-AACAAAAAAACAAAGAA-AAAAAAAC
*
56455 AAAAAACAAAAACAAAAAAACAAAGAAAAAAAAAC
1 AAAAACCAAAAACAAAAAAACAAAGAAAAAAAAAC
*
56490 AAAAA-CAACAACAACAAAAA
1 AAAAACCAAAAACAA-AAAAA
56510 GGGTCCGGAT
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
34 10 0.20
35 33 0.67
36 6 0.12
ACGTcount: A:0.82, C:0.13, G:0.03, T:0.01
Consensus pattern (35 bp):
AAAAACCAAAAACAAAAAAACAAAGAAAAAAAAAC
Found at i:56459 original size:36 final size:35
Alignment explanation
Indices: 56435--56509 Score: 109
Period size: 35 Copynumber: 2.1 Consensus size: 35
56425 CCAAATAAAC
56435 AAAAA-AAAGAAGAAAAAAACAAAAAACAAAAACAA
1 AAAAACAAAGAA-AAAAAAACAAAAAACAAAAACAA
*
56470 AAAAACAAAGAAAAAAAAAC-AAAAACAACAACAA
1 AAAAACAAAGAAAAAAAAACAAAAAACAAAAACAA
56504 CAAAAA
1 -AAAAA
56510 GGGTCCGGAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
34 13 0.35
35 18 0.49
36 6 0.16
ACGTcount: A:0.84, C:0.12, G:0.04, T:0.00
Consensus pattern (35 bp):
AAAAACAAAGAAAAAAAAACAAAAAACAAAAACAA
Found at i:56465 original size:6 final size:6
Alignment explanation
Indices: 56449--56503 Score: 53
Period size: 6 Copynumber: 9.3 Consensus size: 6
56439 AAAAGAAGAA
*
56449 AAAAAC AAAAAAC AAAAAC AAAAA- AACAAA- GAAAA- AAAAAC AAAAAC
1 AAAAAC -AAAAAC AAAAAC AAAAAC AA-AAAC AAAAAC AAAAAC AAAAAC
*
56496 AACAAC AA
1 AAAAAC AA
56504 CAAAAAGGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
5 9 0.21
6 28 0.65
7 6 0.14
ACGTcount: A:0.84, C:0.15, G:0.02, T:0.00
Consensus pattern (6 bp):
AAAAAC
Found at i:56466 original size:28 final size:29
Alignment explanation
Indices: 56418--56509 Score: 100
Period size: 29 Copynumber: 3.2 Consensus size: 29
56408 GCGTCCTCCA
* *
56418 AAAAAAACCAAATAAAC-AAAA-AAAAGAAG
1 AAAAAAA-CAAA-AAACAAAAACAAAAAAAC
56447 AAAAAAACAAAAAACAAAAACAAAAAAAC
1 AAAAAAACAAAAAACAAAAACAAAAAAAC
* *
56476 AAAGAAA-AAAAAACAAAAACAACAACAAC
1 AAAAAAACAAAAAACAAAAACAA-AAAAAC
56505 AAAAA
1 AAAAA
56510 GGGTCCGGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
27 4 0.07
28 23 0.42
29 28 0.51
ACGTcount: A:0.83, C:0.13, G:0.03, T:0.01
Consensus pattern (29 bp):
AAAAAAACAAAAAACAAAAACAAAAAAAC
Found at i:56485 original size:14 final size:13
Alignment explanation
Indices: 56431--56509 Score: 79
Period size: 14 Copynumber: 5.7 Consensus size: 13
56421 AAAACCAAAT
56431 AAACAAAAAAAAGA
1 AAACAAAAAAAA-A
*
56445 AGAA-AAAAACAAA
1 A-AACAAAAAAAAA
56458 AAACAAAAACAAAA
1 AAACAAAAA-AAAA
56472 AAACAAAGAAAAAA
1 AAACAAA-AAAAAA
56486 AAACAAAAACAACAA
1 AAACAAAAA-AA-AA
*
56501 CAACAAAAA
1 AAACAAAAA
56510 GGGTCCGGAT
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
12 2 0.04
13 9 0.16
14 31 0.55
15 14 0.25
ACGTcount: A:0.84, C:0.13, G:0.04, T:0.00
Consensus pattern (13 bp):
AAACAAAAAAAAA
Found at i:56493 original size:20 final size:19
Alignment explanation
Indices: 56417--56497 Score: 74
Period size: 21 Copynumber: 3.9 Consensus size: 19
56407 GGCGTCCTCC
*
56417 AAAAAAAACCAAATAAACAAA
1 AAAAAAAAAC-AA-AAACAAA
56438 AAAAAGAAGAA-AAAAACAAA
1 AAAAA-AA-AACAAAAACAAA
*
56458 AAACAAAAACAAAAAAACAAA
1 AAA-AAAAA-ACAAAAACAAA
56479 GAAAAAAAAACAAAAACAA
1 -AAAAAAAAACAAAAACAA
56498 CAACAACAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
19 1 0.02
20 22 0.42
21 23 0.44
22 5 0.10
23 1 0.02
ACGTcount: A:0.84, C:0.11, G:0.04, T:0.01
Consensus pattern (19 bp):
AAAAAAAAACAAAAACAAA
Found at i:56505 original size:9 final size:9
Alignment explanation
Indices: 56431--56506 Score: 52
Period size: 9 Copynumber: 8.7 Consensus size: 9
56421 AAAACCAAAT
*
56431 AAACAAAAA
1 AAACAACAA
* *
56440 AAAGAAGAA
1 AAACAACAA
56449 AAA-AAC-A
1 AAACAACAA
56456 AAA-AACAA
1 AAACAACAA
56464 AAACAA-AA
1 AAACAACAA
*
56472 AAACAAAGAAA
1 AAAC-AA-CAA
*
56483 AAAAAACAA
1 AAACAACAA
56492 AAACAACAA
1 AAACAACAA
*
56501 CAACAA
1 AAACAA
56507 AAAGGGTCCG
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
7 7 0.13
8 12 0.22
9 29 0.53
10 2 0.04
11 5 0.09
ACGTcount: A:0.83, C:0.13, G:0.04, T:0.00
Consensus pattern (9 bp):
AAACAACAA
Found at i:58048 original size:30 final size:30
Alignment explanation
Indices: 57952--58240 Score: 292
Period size: 30 Copynumber: 9.9 Consensus size: 30
57942 TCACCCTTCA
* *
57952 AAAGCCCACAAGTCAGTGGCA-TCTTTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
57981 AAAGCCCACAAGTCAGTGGCAACC--TT-C
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * *
58008 AAAACCCACAAATCAGTGCCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* *
58038 AAAGCCCACAAGTCAGTGGCACTCTTTTTC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* *
58068 AAAGCCCACAAATCAGTGGCACCCTTCTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * *
58098 GAAAGCACACAAGTCAGTGGCAACC--TTCA
1 -AAAGCCCACAAGTCAGTGGCACCCTTTTCC
58127 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
* * * *
58157 AAAGCCCATAAGTCAAT-GCTAACC--TTCA
1 AAAGCCCACAAGTCAGTGGC-ACCCTTTTCC
* * * *
58185 AAAGCCCACAAGTTAGTGGTA-TCTTTTCA
1 AAAGCCCACAAGTCAGTGGCACCCTTTTCC
*
58214 AAAGCCCACAAGTCAGTGGCAACCTTT
1 AAAGCCCACAAGTCAGTGGCACCCTTT
58241 AAAAGCACAC
Statistics
Matches: 214, Mismatches: 34, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
27 22 0.10
28 42 0.20
29 51 0.24
30 78 0.36
31 21 0.10
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (30 bp):
AAAGCCCACAAGTCAGTGGCACCCTTTTCC
Found at i:58240 original size:87 final size:86
Alignment explanation
Indices: 57948--58280 Score: 354
Period size: 86 Copynumber: 3.8 Consensus size: 86
57938 TTCCTCACCC
*
57948 TTCAAAAGCCCACAAGTCAGTGGCATCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAA-
1 TTCAAAAGCCCACAAGTCAGTGGCACCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAG
* * *
58012 CCCACAAATCAGTGCCACCCTT
66 CCCACAAGTCAGTGGCA-ACTT
* * * *
58034 TTCCAAAGCCCACAAGTCAGTGGCACTCTTTTTCAAAGCCCACAAATCAGTGGCACCCTTCTCCG
1 TTCAAAAGCCCACAAGTCAGTGGCAC-CTTTTTCAAAGCCCACAAGTCAGTGGCAACC-T-T-CA
* *
58099 AAAGCACACAAGTCAGTGGCAAC-C
62 AAAGCCCACAAGTCAGTGGCAACTT
* * *
58123 TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCATAAGTCAAT-GCTAACCTTCAAA
1 TTCAAAAGCCCACAAGTCAGTGGCA-CCTTTTTCAAAGCCCACAAGTCAGTGGC-AACCTTCAAA
* * *
58187 AGCCCACAAGTTAGTGGTATCTT
64 AGCCCACAAGTCAGTGGCAACTT
* * **
58210 TTCAAAAGCCCACAAGTCAGTGGCAACC--TTTAAAAGCACACAAGTTGGT-GCAACCCTATCAA
1 TTCAAAAGCCCACAAGTCAGTGGC-ACCTTTTTCAAAGCCCACAAGTCAGTGGCAA-CCT-TCAA
58272 AAGCCCACA
63 AAGCCCACA
58281 CAAGTTGGTG
Statistics
Matches: 207, Mismatches: 29, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
84 2 0.01
85 19 0.09
86 57 0.28
87 56 0.27
88 5 0.02
89 48 0.23
90 6 0.03
91 14 0.07
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.20
Consensus pattern (86 bp):
TTCAAAAGCCCACAAGTCAGTGGCACCTTTTTCAAAGCCCACAAGTCAGTGGCAACCTTCAAAAG
CCCACAAGTCAGTGGCAACTT
Found at i:58255 original size:57 final size:58
Alignment explanation
Indices: 57946--58254 Score: 387
Period size: 57 Copynumber: 5.3 Consensus size: 58
57936 TATTCCTCAC
* *
57946 CCTTCAAAAGCCCACAAGTCAGTGGCA-TCTTTTTCAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
* *
58003 CCTTCAAAA-CCCACAAATCAGTGCCACCCTTTTCCAAAGCCCACAAGTCAGTGGC-A
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
* * *
58059 CTCTTTTTC-AAAGCCCACAAATCAGTGGCACCCTTCTCCGAAAGCACACAAGTCAGTGGCAA
1 C-C---TTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCC-AAAGCCCACAAGTCAGTGGCAA
* *
58121 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCATAAGTCAAT-GCTAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGC-AA
* * * *
58179 CCTTCAAAAGCCCACAAGTTAGTGGTA-TCTTTTCAAAAGCCCACAAGTCAGTGGCAA
1 CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
* *
58236 CCTTTAAAAGCACACAAGT
1 CCTTCAAAAGCCCACAAGT
58255 TGGTGCAACC
Statistics
Matches: 221, Mismatches: 20, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
56 17 0.08
57 78 0.35
58 46 0.21
59 31 0.14
60 27 0.12
61 20 0.09
62 2 0.01
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.21
Consensus pattern (58 bp):
CCTTCAAAAGCCCACAAGTCAGTGGCACCCTTTTCCAAAGCCCACAAGTCAGTGGCAA
Found at i:58280 original size:29 final size:27
Alignment explanation
Indices: 57946--58280 Score: 156
Period size: 29 Copynumber: 11.6 Consensus size: 27
57936 TATTCCTCAC
* *
57946 CCTTCAAAAGCCCACAAGTCAGTGGCAT
1 CCTTCAAAAGCCCACAAGTTAGT-GCAA
* *
57974 CTTTTTC-AAAGCCCACAAGTCAGTGGCAA
1 C--CTTCAAAAGCCCACAAGTTAGT-GCAA
* * *
58003 CCTTCAAAA-CCCACAAATCAGTGCCAC
1 CCTTCAAAAGCCCACAAGTTAGTG-CAA
* *
58030 CCTTTTCCAAAGCCCACAAGTCAGTGGC-A
1 CC--TTCAAAAGCCCACAAGTTAGT-GCAA
* * *
58059 CTCTTTTTC-AAAGCCCACAAATCAGTGGCAC
1 C-C---TTCAAAAGCCCACAAGTTAGT-GCAA
* * *
58090 CCTTCTCCGAAAGCACACAAGTCAGTGGCAA
1 CC-T-T-CAAAAGCCCACAAGTTAGT-GCAA
* *
58121 CCTTCAAAAGCCCACAAGTCAGTGGCAC
1 CCTTCAAAAGCCCACAAGTTAGT-GCAA
* * * *
58149 CCTTTTCCAAAGCCCATAAGTCAATGCTAA
1 CC--TTCAAAAGCCCACAAGTTAGTGC-AA
* *
58179 CCTTCAAAAGCCCACAAGTTAGTGGTAT
1 CCTTCAAAAGCCCACAAGTTAGT-GCAA
* *
58207 CTTTTCAAAAGCCCACAAGTCAGTGGCAA
1 C-CTTCAAAAGCCCACAAGTTAGT-GCAA
* * *
58236 CCTTTAAAAGCACACAAGTTGGTGCAA
1 CCTTCAAAAGCCCACAAGTTAGTGCAA
58263 CCCTATCAAAAGCCCACA
1 -CCT-TCAAAAGCCCACA
58281 CAAGTTGGTG
Statistics
Matches: 249, Mismatches: 37, Indels: 41
0.76 0.11 0.13
Matches are distributed among these distances:
26 1 0.00
27 23 0.09
28 68 0.27
29 69 0.28
30 60 0.24
31 28 0.11
ACGTcount: A:0.33, C:0.32, G:0.15, T:0.20
Consensus pattern (27 bp):
CCTTCAAAAGCCCACAAGTTAGTGCAA
Found at i:58369 original size:49 final size:48
Alignment explanation
Indices: 58302--58576 Score: 249
Period size: 49 Copynumber: 5.8 Consensus size: 48
58292 CATCTTCATC
*
58302 TAAATCCAATATCGCTGGCCTTGAATCAGCATATTAGCACAGTCATCTT
1 TAAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC-GTCATCTT
* * * * * *
58351 TAAACCCAGTGTCGCTGGCCTTGAACCAACACATTGGCA---C--CTT
1 TAAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCACGTCATCTT
* *
58394 TAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCGTCATCTT
1 TAAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CGTCATCTT
* * * *
58443 TAAGA-ACAATGTCGCTGGCCTTGAATCAGCACATTGGCATCTTCATCTT
1 TAA-ATCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CGTCATCTT
* ** *
58492 TAAGTCCGGTATCGCTGGCTTTGAATCAGCATATTGGCACTGTCATCTT
1 TAAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC-GTCATCTT
* * * * *
58541 TAAGAT-CAATGTCGTTGGCCATGAAGCAGCACATTG
1 TAA-ATCCAATATCGCTGGCCTTGAATCAGCATATTG
58577 TCATTCTTCA
Statistics
Matches: 177, Mismatches: 39, Indels: 20
0.75 0.17 0.08
Matches are distributed among these distances:
43 34 0.19
45 1 0.01
47 1 0.01
48 1 0.01
49 139 0.79
50 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (48 bp):
TAAATCCAATATCGCTGGCCTTGAATCAGCATATTGGCACGTCATCTT
Found at i:58531 original size:98 final size:98
Alignment explanation
Indices: 58289--58586 Score: 362
Period size: 98 Copynumber: 3.1 Consensus size: 98
58279 CACAAGTTGG
* *
58289 TGGCATCTTCATC--TAAATCCAATATCGCTGGCCTTGAATCAGCATATTAGCACAGTCATCTTT
1 TGGCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAGTCATCTTT
* * *
58352 AA-ACCCAGTGTCGCTGGCCTTGAACCAACACAT
66 AAGA-ACAATGTCGCTGGCCTTGAACCAGCACAT
* *
58385 TGGCA----C--CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCGTCATCTTT
1 TGGCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAGTCATCTTT
*
58444 AAGAACAATGTCGCTGGCCTTGAATCAGCACAT
66 AAGAACAATGTCGCTGGCCTTGAACCAGCACAT
** * *
58477 TGGCATCTTCATCTTTAAGTCCGGTATCGCTGGCTTTGAATCAGCATATTGGCACTGTCATCTTT
1 TGGCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAGTCATCTTT
* * * *
58542 AAGATCAATGTCGTTGGCCATGAAGCAGCACAT
66 AAGAACAATGTCGCTGGCCTTGAACCAGCACAT
*
58575 TGTCATTCTTCA
1 TGGCA-TCTTCA
58587 CATCTTCGAG
Statistics
Matches: 174, Mismatches: 18, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
90 1 0.01
92 79 0.45
93 1 0.01
96 6 0.03
98 81 0.47
99 6 0.03
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (98 bp):
TGGCATCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACAGTCATCTTT
AAGAACAATGTCGCTGGCCTTGAACCAGCACAT
Found at i:59353 original size:13 final size:13
Alignment explanation
Indices: 59335--59361 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
59325 ACATTACTCA
59335 AATGTATCGATAC
1 AATGTATCGATAC
59348 AATGTATCGATAC
1 AATGTATCGATAC
59361 A
1 A
59362 CTGATCTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:59412 original size:52 final size:52
Alignment explanation
Indices: 59370--59498 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
59360 CACTGATCTT
59370 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
* * * *
59422 TGTATCGATATATGTAGGCAAATTTGCCTAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
* *
59474 TATATCGATACATGCAGGGAAATTT
1 TGTATCGATACATGCAGGCAAATTT
59499 TCATATTTCG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGTATCGATACACTATAAAA
Found at i:63432 original size:13 final size:13
Alignment explanation
Indices: 63414--63465 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
63404 AGCTTTGAAG
63414 CGATACATTGTAT
1 CGATACATTGTAT
63427 CGATACAACACTTATGTAT
1 CGAT---ACA-TT--GTAT
63446 CGATACATTGTAT
1 CGATACATTGTAT
63459 CGATACA
1 CGATACA
63466 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 15 0.45
15 2 0.06
16 6 0.18
17 2 0.06
19 8 0.24
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:63446 original size:19 final size:19
Alignment explanation
Indices: 63422--63484 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
63412 AGCGATACAT
63422 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
63441 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
63454 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
63473 TGTATCGATACA
1 TGTATCGATACA
63485 GTTACTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
16 6 0.16
18 1 0.03
19 21 0.55
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:63455 original size:32 final size:32
Alignment explanation
Indices: 63414--63484 Score: 142
Period size: 32 Copynumber: 2.2 Consensus size: 32
63404 AGCTTTGAAG
63414 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
63446 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAACACTTATGTAT
63478 CGATACA
1 CGATACA
63485 GTTACTGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAACACTTATGTAT
Found at i:63832 original size:65 final size:65
Alignment explanation
Indices: 63753--63983 Score: 217
Period size: 65 Copynumber: 3.6 Consensus size: 65
63743 TGTCTACAAG
* * *
63753 TGGCATC-CTTTTCTTCCAAGTCCACAACTCAGGGGCATCATTTTCTTCCAAGTCCATGACTCAA
1 TGGCATCTTTTTTCTTCCAAGTCCACGACTCAGTGGCATCATTTTCTTCCAAGTCCATGACTCAA
* * *
63817 TGGCATCTTTTTTCTTCCAAGTCCATGACTCAGTGGCA--A-TCTCTTCCCAAAATCCATGACTC
1 TGGCATCTTTTTTCTTCCAAGTCCACGACTCAGTGGCATCATTTTCTT-CC-AAGTCCATGACTC
**
63879 TG
64 AA
* * * * **
63881 TGGCACCTTTTTCTTTTCAAAGTCCACGACTCAGTGGCATC-TTTTCTTCAAAGTCCACAACTCA
1 TGGCATCTTTTT-TCTTCCAAGTCCACGACTCAGTGGCATCATTTTCTTCCAAGTCCATGACTCA
*
63945 G
65 A
* *
63946 TGGCAATC--TCTTC-TCAAAGTCCACGACTCAGTGGCATC
1 TGGC-ATCTTTTTTCTTCCAAGTCCACGACTCAGTGGCATC
63984 TCTTCCCAAA
Statistics
Matches: 138, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
62 30 0.22
63 4 0.03
64 32 0.23
65 64 0.46
66 3 0.02
67 5 0.04
ACGTcount: A:0.23, C:0.30, G:0.15, T:0.32
Consensus pattern (65 bp):
TGGCATCTTTTTTCTTCCAAGTCCACGACTCAGTGGCATCATTTTCTTCCAAGTCCATGACTCAA
Found at i:63876 original size:31 final size:31
Alignment explanation
Indices: 63835--64003 Score: 189
Period size: 31 Copynumber: 5.4 Consensus size: 31
63825 TTTTTCTTCC
* *
63835 AAGTCCATGACTCAGTGGCAATCTCTTCCCA
1 AAGTCCACGACTCAGTGGCAATCTCTTCTCA
* * * * * *
63866 AAATCCATGACTCTGTGGCACCTTTTTCTTTTCA
1 AAGTCCACGACTCAGTGGCA---ATCTCTTCTCA
*
63900 AAGTCCACGACTCAGTGGC-ATCTTTTCTTCA
1 AAGTCCACGACTCAGTGGCAATCTCTTC-TCA
*
63931 AAGTCCACAACTCAGTGGCAATCTCTTCTCA
1 AAGTCCACGACTCAGTGGCAATCTCTTCTCA
*
63962 AAGTCCACGACTCAGTGGC-ATCTCTTCCCA
1 AAGTCCACGACTCAGTGGCAATCTCTTCTCA
63992 AAGTCCACGACT
1 AAGTCCACGACT
64004 TTGCGGCACC
Statistics
Matches: 116, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
30 26 0.22
31 60 0.52
32 7 0.06
34 23 0.20
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (31 bp):
AAGTCCACGACTCAGTGGCAATCTCTTCTCA
Found at i:63918 original size:34 final size:34
Alignment explanation
Indices: 63875--64399 Score: 214
Period size: 34 Copynumber: 16.5 Consensus size: 34
63865 AAAATCCATG
* *
63875 ACTCTGTGGCACCTTTTTCTTTTCAAAGTCCACG
1 ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
*
63909 ACTCAGTGGCATC-TTTTC--TTCAAAGTCCACA
1 ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
* * * *
63940 ACTCAGTGGCA---ATCTCTTCTCAAAGTCCACG
1 ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
* ** *
63971 ACTCAGTGGCA----TCTCTTCCCAAAGTCCACG
1 ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
** * *
64001 ACTTTGCGGCACCTTTTTCTTTTCAAAATCCACA
1 ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
*
64035 ACTCTA-TGGCACC-----CTTTT--AAGTTCACA
1 ACTC-AGTGGCACCTTTTTCTTTTCAAAGTCCACA
* * *
64062 ACTCTGTGGCACCTTTTTCTTTTTAAAGCCCACA
1 ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
*
64096 ACTCCGTGGCACTCTTTTTCCTTTT--AAGTCCACA
1 ACTCAGTGGCAC-CTTTTT-CTTTTCAAAGTCCACA
*
64130 ACTTC-GTGGCA-C-----CTTTT-AAAGCCCACA
1 AC-TCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
* *
64157 ACTCTGTGGCACTCTTTTTCCTTTT--AAGTCCATA
1 ACTCAGTGGCAC-CTTTTT-CTTTTCAAAGTCCACA
* *
64191 ACTCTGTGGCACC-----CTTTT--AAGTCCATA
1 ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
*
64218 ACT-ACGTGGCATCTTTTTCCTTTT--AAGTCCACA
1 ACTCA-GTGGCACCTTTTT-CTTTTCAAAGTCCACA
* *
64251 ACTCCA-TGGCACCCTGTTCCTTTT--AAGTCCACA
1 ACT-CAGTGGCA-CCTTTTTCTTTTCAAAGTCCACA
*
64284 ACTCCA-TGGCA-CTTTTTCGTTTT--AAGTCCACG
1 ACT-CAGTGGCACCTTTTTC-TTTTCAAAGTCCACA
* * **
64316 ACTCTGTGGCACCCTTTTCCTTTTTTAAG-CCACA
1 ACTCAGTGGCA-CCTTTTTCTTTTCAAAGTCCACA
* * * * *
64350 CCTCTGTGGCATCCCCTTTTCCTGT--AAGTCCACA
1 ACTCAGTGGCA--CCTTTTTCTTTTCAAAGTCCACA
*
64384 ACTCCGTGGCACCTTT
1 ACTCAGTGGCACCTTT
64400 AAGTCCAATA
Statistics
Matches: 396, Mismatches: 49, Indels: 94
0.73 0.09 0.17
Matches are distributed among these distances:
26 7 0.02
27 58 0.15
29 9 0.02
30 26 0.07
31 51 0.13
32 30 0.08
33 59 0.15
34 125 0.32
35 26 0.07
36 5 0.01
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.34
Consensus pattern (34 bp):
ACTCAGTGGCACCTTTTTCTTTTCAAAGTCCACA
Found at i:63957 original size:96 final size:97
Alignment explanation
Indices: 63802--63981 Score: 263
Period size: 96 Copynumber: 1.9 Consensus size: 97
63792 ATTTTCTTCC
* * **
63802 AAGTCCATGACTCAATGGCATCTTTTTTCTTCCAAGTCCATGACTCAGTGGCAATCTCTTCCCAA
1 AAGTCCACGACTCAATGGCATC-TTTTTCTTCAAAGTCCACAACTCAGTGGCAATCTCTTCCCAA
* *
63867 AATCCATGACTCTGTGGCACCTTTTTCTTTTCA
65 AATCCACGACTCAGTGGCACCTTTTTCTTTTCA
* *
63900 AAGTCCACGACTCAGTGGCATC-TTTTCTTCAAAGTCCACAACTCAGTGGCAATCTCTTCTCAAA
1 AAGTCCACGACTCAATGGCATCTTTTTCTTCAAAGTCCACAACTCAGTGGCAATCTCTTCCCAAA
*
63964 GTCCACGACTCAGTGGCA
66 ATCCACGACTCAGTGGCA
63982 TCTCTTCCCA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 53 0.73
98 20 0.27
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.31
Consensus pattern (97 bp):
AAGTCCACGACTCAATGGCATCTTTTTCTTCAAAGTCCACAACTCAGTGGCAATCTCTTCCCAAA
ATCCACGACTCAGTGGCACCTTTTTCTTTTCA
Found at i:64045 original size:126 final size:129
Alignment explanation
Indices: 63773--64038 Score: 360
Period size: 126 Copynumber: 2.1 Consensus size: 129
63763 TTCTTCCAAG
* * ** * *
63773 TCCACAACTCAGGGGCATCATTTTCTTCCAAGTCCATGACTCAATGGCATCTTTTTTCTTCCAAG
1 TCCACAACTCAGTGGCATCATTTTCTTCAAAGTCCACAACTCAATGGCATC-TTCTTCTTCAAAG
* * * *
63838 TCCATGACTCAGTGGCAATCTCTTCCCAAAATCCATGACTCTGTGGCACCTTTTTCTTTTCAAAG
65 TCCACGACTCAGTGGCAATCTCTTCCCAAAATCCACGACTCTGCGGCACCTTTTTCTTTTCAAAA
* *
63903 TCCACGACTCAGTGGCATC-TTTTCTTCAAAGTCCACAACTCAGTGGCAATC-TCTTC-TCAAAG
1 TCCACAACTCAGTGGCATCATTTTCTTCAAAGTCCACAACTCAATGGC-ATCTTCTTCTTCAAAG
* *
63965 TCCACGACTCAGTGGC-ATCTCTTCCCAAAGTCCACGACTTTGCGGCACCTTTTTCTTTTCAAAA
65 TCCACGACTCAGTGGCAATCTCTTCCCAAAATCCACGACTCTGCGGCACCTTTTTCTTTTCAAAA
64029 TCCACAACTC
1 TCCACAACTC
64039 TATGGCACCC
Statistics
Matches: 120, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
126 52 0.43
127 20 0.17
128 4 0.03
129 24 0.20
130 20 0.17
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.32
Consensus pattern (129 bp):
TCCACAACTCAGTGGCATCATTTTCTTCAAAGTCCACAACTCAATGGCATCTTCTTCTTCAAAGT
CCACGACTCAGTGGCAATCTCTTCCCAAAATCCACGACTCTGCGGCACCTTTTTCTTTTCAAAA
Found at i:64107 original size:95 final size:94
Alignment explanation
Indices: 64008--64208 Score: 239
Period size: 95 Copynumber: 2.1 Consensus size: 94
63998 ACGACTTTGC
**
64008 GGCACCTTTTT-CTTTTCAAAATCCACAAC-TCTATGGCACCCTTTT-AAGTTCACAACTCTGTG
1 GGCACCTTTTTCCTTTT--AAATCCACAACTTC-ATGGCA-CCTTTTAAAGCCCACAACTCTGTG
*
64070 GCAC-CTTTTTCTTTTTAAAGCCCACAACTCCGT
62 GCACTCTTTTTCCTTTT-AAGCCCACAACTCCGT
* *
64103 GGCACTCTTTTTCCTTTTAAGTCCACAACTTCGTGGCACCTTTTAAAGCCCACAACTCTGTGGCA
1 GGCAC-CTTTTTCCTTTTAAATCCACAACTTCATGGCACCTTTTAAAGCCCACAACTCTGTGGCA
* * *
64168 CTCTTTTTCCTTTTAAGTCCATAACTCTGT
65 CTCTTTTTCCTTTTAAGCCCACAACTCCGT
*
64198 GGCACCCTTTT
1 GGCACCTTTTT
64209 AAGTCCATAA
Statistics
Matches: 92, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
94 11 0.12
95 57 0.62
96 19 0.21
97 5 0.05
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.37
Consensus pattern (94 bp):
GGCACCTTTTTCCTTTTAAATCCACAACTTCATGGCACCTTTTAAAGCCCACAACTCTGTGGCAC
TCTTTTTCCTTTTAAGCCCACAACTCCGT
Found at i:64147 original size:61 final size:61
Alignment explanation
Indices: 64047--64333 Score: 303
Period size: 61 Copynumber: 4.5 Consensus size: 61
64037 TCTATGGCAC
*
64047 CCTTTTAAGTTCACAACTCTGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 CCTTTTAAGTCCACAACTCTGTGGCACC-----C-TTTTAAAGCCCACAACTCCGTGGCA-TCTT
64112 TTT
59 TTT
*
64115 CCTTTTAAGTCCACAACT-TCGTGGCA-CCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCT-GTGGCACCCTTTTAAAGCCCACAACTCCGTGGCA-TCTTTTT
* * * *
64176 CCTTTTAAGTCCATAACTCTGTGGCACCCTTTT-AAGTCCATAACTACGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCATCTTTTT
** * * *
64236 CCTTTTAAGTCCACAACTCCATGGCACCCTGTTCCTTTTAAGTCCACAACTCCATGGCA-CTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCC---T--TTTAAAGCCCACAACTCCGTGGCATCTTTT
64300 T
61 T
* *
64301 CGTTTTAAGTCCACGACTCTGTGGCACCCTTTT
1 CCTTTTAAGTCCACAACTCTGTGGCACCCTTTT
64334 CCTTTTTTAA
Statistics
Matches: 193, Mismatches: 17, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
60 36 0.19
61 71 0.37
62 9 0.05
63 1 0.01
65 34 0.18
66 17 0.09
67 2 0.01
68 23 0.12
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (61 bp):
CCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCATCTTTTT
Found at i:64159 original size:27 final size:26
Alignment explanation
Indices: 64115--64174 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 26
64105 CACTCTTTTT
*
64115 CCTTTTAAGTCCACAACT-TCGTGGCA
1 CCTTTTAAGCCCACAACTCT-GTGGCA
64141 CCTTTTAAAGCCCACAACTCTGTGGCA
1 CCTTTT-AAGCCCACAACTCTGTGGCA
64168 CTCTTTT
1 C-CTTTT
64175 TCCTTTTAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
26 6 0.20
27 18 0.60
28 6 0.20
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (26 bp):
CCTTTTAAGCCCACAACTCTGTGGCA
Found at i:64235 original size:27 final size:27
Alignment explanation
Indices: 64176--64228 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
64166 CACTCTTTTT
64176 CCTTTTAAGTCCATAACTCTGTGGCAC
1 CCTTTTAAGTCCATAACTCTGTGGCAC
64203 CCTTTTAAGTCCATAACTAC-GTGGCA
1 CCTTTTAAGTCCATAACT-CTGTGGCA
64229 TCTTTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 24 0.96
28 1 0.04
ACGTcount: A:0.25, C:0.28, G:0.15, T:0.32
Consensus pattern (27 bp):
CCTTTTAAGTCCATAACTCTGTGGCAC
Found at i:64245 original size:33 final size:31
Alignment explanation
Indices: 64047--64395 Score: 229
Period size: 34 Copynumber: 10.8 Consensus size: 31
64037 TCTATGGCAC
*
64047 CCTTTTAAGTTCACAACTCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTC-GTGGCA-CTTTTT
* *
64080 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACT-CGTGGCA--CTTTTT
64115 CCTTTTAAGTCCACAACTTCGTGGCA------
1 CCTTTTAAGTCCACAAC-TCGTGGCACTTTTT
*
64141 CCTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTC-GTGGCA--CTTTTT
*
64176 CCTTTTAAGTCCATAACTCTGTGGCAC-----
1 CCTTTTAAGTCCACAACTC-GTGGCACTTTTT
*
64203 CCTTTTAAGTCCATAACTACGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACT-CGTGGCA-CTTTTT
* * *
64236 CCTTTTAAGTCCACAACTCCATGGCACCCTGTT
1 CCTTTTAAGTCCACAACT-CGTGGCA-CTTTTT
*
64269 CCTTTTAAGTCCACAACTCCATGGCACTTTTT
1 CCTTTTAAGTCCACAACT-CGTGGCACTTTTT
* * *
64301 CGTTTTAAGTCCACGACTCTGTGGCACCCTTTT
1 CCTTTTAAGTCCACAACTC-GTGGCA-CTTTTT
* *
64334 CCTTTTTTAAG-CCACACCTCTGTGGCATCCCCTTTT
1 CC--TTTTAAGTCCACAACTC-GTGGCA---CTTTTT
*
64370 CC-TGTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACT-CGTGGCAC
64396 CTTTAAGTCC
Statistics
Matches: 261, Mismatches: 26, Indels: 60
0.75 0.07 0.17
Matches are distributed among these distances:
26 8 0.03
27 40 0.15
28 2 0.01
31 2 0.01
32 26 0.10
33 69 0.26
34 78 0.30
35 27 0.10
36 9 0.03
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.36
Consensus pattern (31 bp):
CCTTTTAAGTCCACAACTCGTGGCACTTTTT
Found at i:64313 original size:65 final size:66
Alignment explanation
Indices: 64141--64396 Score: 201
Period size: 65 Copynumber: 3.9 Consensus size: 66
64131 CTTCGTGGCA
* * * **
64141 CCTTTTAAAGCCCACAACT-CTGTGGCACTCTTTTTCCTTTTAAGTCCATAACTCTGTGGCA--C
1 CCTTTT-AAGTCCACAACTAC-ATGGCA-TCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCC
64203 ----
63 TGTT
* *
64203 CCTTTTAAGTCCATAACTACGTGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTGT
1 CCTTTTAAGTCCACAACTACATGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTGT
64268 T
66 T
* * * ** *
64269 CCTTTTAAGTCCACAACTCCATGGCA-CTTTTTCGTTTTAAGTCCACGACTCTGTGGCACCCTTT
1 CCTTTTAAGTCCACAACTACATGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTGT
64333 T
66 T
* * * * *
64334 CCTTTTTTAAG-CCACACCT-CTGTGGCATCCCCTTTTCC-TGTAAGTCCACAACTCCGTGGCAC
1 CC--TTTTAAGTCCACAACTAC-ATGGCAT--CTTTTTCCTTTTAAGTCCACAACTCCATGGCAC
64396 C
61 C
64397 TTTAAGTCCA
Statistics
Matches: 161, Mismatches: 20, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
60 30 0.19
61 16 0.10
62 8 0.05
65 37 0.23
66 35 0.22
67 7 0.04
68 22 0.14
69 6 0.04
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.35
Consensus pattern (66 bp):
CCTTTTAAGTCCACAACTACATGGCATCTTTTTCCTTTTAAGTCCACAACTCCATGGCACCCTGT
T
Found at i:64368 original size:36 final size:35
Alignment explanation
Indices: 64205--64396 Score: 113
Period size: 33 Copynumber: 5.7 Consensus size: 35
64195 TGTGGCACCC
** * *
64205 TTTTAAGTCCATAACTAC-GTGGCATCTTTTTCC--
1 TTTTAAGTCCACGACT-CTGTGGCACCCTTTTCCTT
* ** *
64238 TTTTAAGTCCACAACTCCATGGCACCCTGTTCC--
1 TTTTAAGTCCACGACTCTGTGGCACCCTTTTCCTT
* ** * *
64271 TTTTAAGTCCACAACTCCATGGCA--CTTTTTC-G
1 TTTTAAGTCCACGACTCTGTGGCACCCTTTTCCTT
64303 TTTTAAGTCCACGACTCTGTGGCACCCTTTTCCTT
1 TTTTAAGTCCACGACTCTGTGGCACCCTTTTCCTT
64338 TTTTAAG-CCAC-ACCTCTGTGGCATCCCCTTTTCC--
1 TTTTAAGTCCACGA-CTCTGTGGCA--CCCTTTTCCTT
* * *
64372 -TGTAAGTCCACAACTCCGTGGCACC
1 TTTTAAGTCCACGACTCTGTGGCACC
64397 TTTAAGTCCA
Statistics
Matches: 135, Mismatches: 14, Indels: 21
0.79 0.08 0.12
Matches are distributed among these distances:
31 5 0.04
32 24 0.18
33 56 0.41
34 33 0.24
35 8 0.06
36 9 0.07
ACGTcount: A:0.19, C:0.32, G:0.14, T:0.35
Consensus pattern (35 bp):
TTTTAAGTCCACGACTCTGTGGCACCCTTTTCCTT
Found at i:64468 original size:49 final size:49
Alignment explanation
Indices: 64396--65494 Score: 735
Period size: 49 Copynumber: 23.8 Consensus size: 49
64386 TCCGTGGCAC
* *
64396 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
64445 CTTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATT-G-A-C---AC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
64488 CTTTAAGTCCAATATCGCTGGCCTTGAATTAGCATATTGGCACCTTTAC
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * * *
64537 CATCTTGAGCCCAATATTGCTAGCCTTGAATCAGTATATTGGCACC-TTGT
1 C-T-TTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
64587 CTTTGAGACCAATGTCGCTAGCCTTGAATCAGCACAATGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
64629 C---AAGCCCAATATCGCTGGCCTTGAATCAGCATATTAGAACC-TTGT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
64674 CTGTAAGACTAATGTCGCTAGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * *
64716 ---TAAGCCCAATATCGTTGGCCTTGAATTAGGATATTGGCACC-TTGT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
64761 CTCTAAGACCAATGTCGCTGGCCTTGAAGT-AGCACATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAA-TCAGCATATTGGCACCTTTAT
* * * * * * *
64803 ---TAAGCCCAATATCGCTAGCTTTGAATTAGCATATTAGCACC-TTGT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
64848 CTTTAAGACCAATGTCGTTGGCCTTGAATCAGCACATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
64890 C---AAGCCCAATATCGCTAGCCTTGAATCAGCATATTAGAACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * *
64936 CTTTAAGACCAATGTCACTGGCCTTGAATCAGTACATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
64978 C---AAGCCCAATATCGCTAGCCATGAATCAGCATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
*
65024 CTTTAAGACCAATGTCGCTGGCCTTGAACCAGCATATTGG---C---A-
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
65066 C---AAG-CCTAATATCGTTGGCCTTGAATCAGCATATTGGCACGTTCAT
1 CTTTAAGACC-AATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
65112 CTTTAAGACCGATGTCGTTGGCCTTGAATCAACACATTAGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
65161 CTTTAAGACCAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
65210 CTTTAAGTCCAATGCCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * *
65259 CTTTAAGTCCGATATCGCTGGCCTTGAATCGGCATATTGGCACCTTTAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* *
65308 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * * *
65357 CTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAA
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* ** * *
65406 CATTCCTAAGGCCAATGTCGCTGGCCTTGTCTCAGCAAATTGGCA--TTTTT
1 C-TT--TAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
* * * * *
65456 CTTCAAGTCTAATGTCGCTGGCCATGAATCAGCACATTG
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTG
65495 TCATTCTTTG
Statistics
Matches: 824, Mismatches: 154, Indels: 146
0.73 0.14 0.13
Matches are distributed among these distances:
38 3 0.00
39 176 0.21
42 9 0.01
43 36 0.04
44 1 0.00
45 9 0.01
46 7 0.01
47 30 0.04
48 122 0.15
49 351 0.43
50 12 0.01
51 36 0.04
52 32 0.04
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (49 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTTAT
Found at i:64690 original size:87 final size:87
Alignment explanation
Indices: 64544--65350 Score: 878
Period size: 87 Copynumber: 9.0 Consensus size: 87
64534 TACCATCTTG
* * * * *
64544 AGCCCAATATTGCTAGCCTTGAATCAGTATATTGGCACCTTGTCTTTGAGACCAATGTCGCTAGC
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGCTGGC
*
64609 CTTGAATCAGCACAATGGCACA
66 CTTGAATCAGCACATTGGCACA
* * * * *
64631 AGCCCAATATCGCTGGCCTTGAATCAGCATATTAGAACCTTGTCTGTAAGACTAATGTCGCTAGC
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGCTGGC
*
64696 CTTGAATCAGCACATTGGCATA
66 CTTGAATCAGCACATTGGCACA
* * * * * *
64718 AGCCCAATATCGTTGGCCTTGAATTAGGATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGC
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGCTGGC
*
64783 CTTGAAGT-AGCACATTGGCATA
66 CTTGAA-TCAGCACATTGGCACA
* * *
64805 AGCCCAATATCGCTAGCTTTGAATTAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGTTGGC
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGCTGGC
64870 CTTGAATCAGCACATTGGCACA
66 CTTGAATCAGCACATTGGCACA
* * *
64892 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGAACCTTTATCTTTAAGACCAATGTCACTGG
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACC-TTGTCTTTAAGACCAATGTCGCTGG
*
64957 CCTTGAATCAGTACATTGGCACA
65 CCTTGAATCAGCACATTGGCACA
* * *
64980 AGCCCAATATCGCTAGCCATGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGG
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACC-TTGTCTTTAAGACCAATGTCGCTGG
* *
65045 CCTTGAACCAGCATATTGGCACA
65 CCTTGAATCAGCACATTGGCACA
* * * * * * * *
65068 AGCCTAATATCGTTGGCCTTGAATCAGCATATTGGCACGTTCATCTTTAAGACCGATGTCGTTGG
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACCTT-GTCTTTAAGACCAATGTCGCTGG
* *
65133 CCTTGAATCAACACATTAGCACCTTTATCTTTA
65 CCTTGAATCAGCACATT-G--GC---A-C---A
* * * * * * * *
65166 AGACCAATGTTGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGCCGCTGG
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACCTT-GTCTTTAAGACCAATGTCGCTGG
65231 CCTTGAATCAGCACATTGGCACCTTCATCTTTA
65 CCTTGAATCAGCACATTGG------CA-C---A
* * * * * *
65264 AGTCCGATATCGCTGGCCTTGAATCGGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCTGG
1 AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACC-TTGTCTTTAAGACCAATGTCGCTGG
65329 CCTTGAATCAGCACATTGGCAC
65 CCTTGAATCAGCACATTGGCAC
65351 CTTCATCTTT
Statistics
Matches: 625, Mismatches: 74, Indels: 38
0.85 0.10 0.05
Matches are distributed among these distances:
86 1 0.00
87 269 0.43
88 195 0.31
89 1 0.00
91 2 0.00
92 2 0.00
94 1 0.00
95 1 0.00
97 1 0.00
98 149 0.24
99 2 0.00
101 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (87 bp):
AGCCCAATATCGCTAGCCTTGAATCAGCATATTAGCACCTTGTCTTTAAGACCAATGTCGCTGGC
CTTGAATCAGCACATTGGCACA
Found at i:64899 original size:39 final size:39
Alignment explanation
Indices: 64856--65105 Score: 167
Period size: 39 Copynumber: 5.9 Consensus size: 39
64846 GTCTTTAAGA
* * *
64856 CCAATGTCGTTGGCCTTGAATCAGCACATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
* * *
64895 CCAATATCGCTAGCCTTGAATCAGCATATTAGAACCTTTATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATT-G--GC---A-C---AAGC
* * * *
64944 CCAATGTCACTGGCCTTGAATCAGTACATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
* * *
64983 CCAATATCGCTAGCCATGAATCAGCATATTGGCACCTTTATCTTTAAGA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGG---C---A-C---AAGC
* *
65032 CCAATGTCGCTGGCCTTGAACCAGCATATTGGCACAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
* *
65071 CTAATATCGTTGGCCTTGAATCAGCATATTGGCAC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCAC
65106 GTTCATCTTT
Statistics
Matches: 162, Mismatches: 29, Indels: 40
0.70 0.13 0.17
Matches are distributed among these distances:
39 89 0.55
40 1 0.01
42 4 0.02
43 2 0.01
45 2 0.01
46 4 0.02
48 1 0.01
49 59 0.36
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.27
Consensus pattern (39 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACAAGC
Found at i:70588 original size:474 final size:476
Alignment explanation
Indices: 69690--73205 Score: 4561
Period size: 475 Copynumber: 7.4 Consensus size: 476
69680 AATGGTGCTG
* * * *
69690 AGGATAAATGGTATTTATGGTTTTCTTTTGCATGGAAATCTTTTCTTT-GTCTCATTTTCCTAAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* * * * *
69754 AATCAAAGTTTGTACTTTAAATGACACATGCATTAATTCTCATAAAAGTCTCCATTCTTTTCAAC
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* * * * *
69819 ATTGGGAACCAAAAACAAATTCCCTTCATTAGGATACATTACATTGACGCTTTGATGCCGCAAGA
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * ** * **
69884 GAGGCTTTTCTTTCCAATGTTATCT-ATAAAATCAAAATTTCCCTCTTAAATGAGACAAAGTTGA
196 GAAGCTTTTCTTTCCAACGTTAT-TGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
* * * * *
69948 ATACTCGTACTAAT--CCATTCTTTTTAAGATTAGGCACCATTAACATAGCCTTCTTATATGGAT
260 ATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC-TATAAGGAT
* * *
70011 ACAGGATATTGATGAATTGGTTTCGCAAGAAACGCTTTTTTTCCCA-TAATTTTTGTAAATTTTA
324 ACAGGATATTGATGATTTGGTTTCGCAAGAAACGC-TTTTTTCCCACCAATTTTTGTAAATTCTA
* * *
70075 AGTTCGTGTCTCAAATGAGACAAACATAGATTCTAGTAAGGATCTTCATTCATTTCGTGAGTAGG
388 AGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGG
* *
70140 CACTATAAACGCATACTCCTCATT
453 CACTATAAACACATTCTCCTCATT
* * * * **
70164 AGGATAAATGATATAGATGGTTTTCTTTTGGATGGAAATATTTTC-TTAGACTTGTTTTCCTTAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* *
70228 AATCAAAGTTTGTCCTTTAAATGAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* * *
70293 ATTGGGAGCTAAAAACACATTCCCATCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
70358 GAAGCTTTTCTTTCTAACGTTGTTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAA
196 GAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *
70423 T-CTTATACTAATCCCCCTTCTTTTTAGGATTAGCCACCATAAACATAGTCTTTTGATACGGATA
261 TACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCT-ATAAGGATA
*** * * * *
70487 CAGGATAAAAATGATTTGGTTTCGCTAAG-AATGCTTTTTTCCCA-CAATTTTTGTAGATTCGAT
325 CAGGATATTGATGATTTGGTTTCGC-AAGAAACGCTTTTTTCCCACCAATTTTTGTAAATTCTAA
* * * * *
70550 GTTCGTGCCTTAAATGAGACAAACATGGATTATAGTAAGGAGCATCATTCATTTCATGATTAGGC
389 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGC
* * *
70615 ACTATAAACACATTCTTCTCCTC
454 ACTATAAACACATTCTCCTCATT
** * *
70638 AGGATGTATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTT-GCCTCACTTTCCTTAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* * * * *
70702 AATCAAAGTTTGTATTTTAAATGAGATACGCATTGATTCTCATAAAAGTCTCCATTCCTTCCAAG
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* * * *
70767 ATTGGGAAACAAAAACACATTCTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGA
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
70832 GAAGCTTTTCTTTCCAATGTTACTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAA
196 GAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * *
70897 TACTCATACTAATCCACATTCTTTTTAGGATTGGGCACCCTAAACATAGTCTTCTCATACGGATA
261 TACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCT-ATAAGGATA
* * * *
70962 CAAGATATTGATGATTTAGTTTTGCAAGAAATGCTTTTTTCCCACCAATTTTTGTAAATTCTAAG
325 CAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTTGTAAATTCTAAG
*
71027 TTCGTGCCTCAAATGAGACAAACATGGATTCCAGTAAGGATCTTCATTCATTTCGTGATTAGGCA
390 TTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCA
*
71092 CTATAAACACATTCTCCTCAAT
455 CTATAAACACATTCTCCTCATT
* * * *
71114 AGGATAAATGATATTGATGGTTTTCTTTTGCATAGAAATATTTTCTTTA-CCTCATTTTTCGTAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* * * * * *
71178 AACCAAAGTTTGTTCTTTAAATGAGGCATGCATTAATTCTCGTAAAAGTCTCCATTCTTTCTAAT
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* * * *
71243 ATTGGGAACCAAGAACACATTCCCTTTATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGA
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * * *
71308 GAAGCTTTTCTTTCCACCTTTATTGATAGAATCAAAGTTTATTTCTTAAATAAGACAAACATGAA
196 GAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *
71373 TACTCATACTAATCCAC-TTGTTTTTCTGGATTAGGCACCATAAACAAATTCTTCTAATAAGG-T
261 TACTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATAGTCTTCT-ATAAGGAT
* * * * *
71436 ACATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTTAATTCAAA
324 ACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTTGTAAATTCTAA
* * * *
71501 TTTCGTGCCCCAAATGAGACAAGCATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
389 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGC
*
71566 ACTATAAACACATTCTCCTCAAT
454 ACTATAAACACATTCTCCTCATT
* * * * * *
71589 AGGATAAATGATATTGATGGTTATCTTTTGCATAGAAATCTTTTCTTTA-TCTCGTTTTTCGTAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* * *
71653 AAGCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCTAAT
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* * * * *
71718 ATTGGGAACCAAGAACACATTCTCTTTATTAGGATACATGACATTGAAGCTTTGGTGTCCCAAGA
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * * *
71783 GAAGCTTTTCTTTCCACCTTTATTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
196 GAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* * * * *
71848 TACTCACACTAATCCACATT-TTTTTCTGGATTAGGCACCATAAACAAATTCTTCTAATAAGG-T
261 TACTCATACTAATCCCCATTCTTTTT-AGGATTAGGCACCATAAACATAGTCTTCT-ATAAGGAT
* * * * *
71911 ACATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTTTTCCCACCAATTTTTGTTAATTCAAA
324 ACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTTGTAAATTCTAA
* * * * *
71976 TTTCGTGCCCCAAATGTGACAAGCATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGC
389 GTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGC
72041 ACTATAAACACATTCTCCTCATT
454 ACTATAAACACATTCTCCTCATT
* ** * * * *
72064 AGGATAAACGATATTGATAATTTTTTTTTCCGTGGAAATCTTTTCTTT-GCCTTATTTTCCTTAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* * * ** *
72128 AATCAAAGTTTATACTTTAAATAAGACATGCGTTGATTCTCACAAAAGTCTCCATTCTTTTCAAG
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* ** * *
72193 ATTTGGAACCAAAAACACATTCTTTTCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGT
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* *
72258 GAAGCTTTTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAA
196 GAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
* *
72322 TACCCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
261 TACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCT-ATAAGGATA
* * * * * * * * *
72387 CATGATCTTGATGCTTTGGTTTCGCAAGATACGCTTTCTTCTCACCAA-TTTTGTTAAAGTATGA
325 CAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTTG-TAAATTCTAA
* * * *
72451 GTTCATTG-CTCAAATAAGACAAACATGGATTCTTGTAGGGATCTTCATTCATTTCGTGATTAGG
389 GTTC-GTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGG
*
72515 CACTATAAACACATTCTCCTCTTT
453 CACTATAAACACATTCTCCTCATT
* * * *
72539 AGGATAAAAGATATTTATGGTTTTCTTTTGCATGGAAATCTTTTCTTTATCAT-ATTTTCCTTAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* **
72603 AAT-AAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCATC
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* *
72667 ATTGGGAACCAAAAACAAATTCCCTTCATTAGGATACATTACATTGATGCTTTGGTG-CTGCAAG
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAG
* * * *
72731 A-AAGGCTTTTCTTTCCAACGTTATCGATGAAATCAAAATTTGTCTCTTAAATAAGACAAA-GTG
195 AGAA-GCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-
* *
72794 GAATACTCATACTAAT-CCCATTCTTTTCAGGATTAGGCACCATTAACATAGTCTTCTTATACA-
258 GAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTC-TATA-AG
* * * * *
72857 GATACAGGATATTGATGAATTGGTTTTGCAAGAAATGCTTTTTTCCCA-TAATTTTTGTAAATTT
321 GATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTTGTAAATTC
* *
72921 TAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGCAAGGATCTTCATTCATTTCGTGATTA
386 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTA
*
72986 GGCACTATAAACACATACTCCTCATT
451 GGCACTATAAACACATTCTCCTCATT
* * * * **
73012 AGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCATT-GACTTGTTTTCCTTAA
1 AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
* * * *
73076 AATCGAAGTTTGTACTTTAAATGAGACATGCATTGATTCCCGTAAAAGTCCCCATTCTTTTCAAG
66 AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
* *
73141 ATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGA
131 ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
73206 TGCATAGAAA
Statistics
Matches: 2697, Mismatches: 315, Indels: 60
0.88 0.10 0.02
Matches are distributed among these distances:
472 2 0.00
473 160 0.06
474 975 0.36
475 1185 0.44
476 375 0.14
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (476 bp):
AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTAGCCTCATTTTCCTTAA
AATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAG
ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
GAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAA
TACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCTATAAGGATAC
AGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACCAATTTTTGTAAATTCTAAGT
TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCAC
TATAAACACATTCTCCTCATT
Found at i:70942 original size:159 final size:156
Alignment explanation
Indices: 69826--74904 Score: 1222
Period size: 159 Copynumber: 32.1 Consensus size: 156
69816 AACATTGGGA
* * * * * * * ** *
69826 ACCAAAAACAAATTCCCTTCATTAGGATACATTACATTGACGCTTTGATGCCGCAAGAGAGGCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCTT
* * ** * ** *
69891 TTCTTTCCAATGTTATCTATAAAATCAAAATTTCCCTCTTAAATGAGACAAAGTTGAATACTCGT
65 TTCTTTCCAAT-TTA-CTGTAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
*
69956 ACTAAT-C-CATTCTTTTTAAGATTAGGC
128 ACTAATCCACATTCTTTTTAGGATTAGGC
* * * * * **
69983 ACCATTAACATA-GC-CTTCTTATATGGATACAGGATATTGATGAATTGGTTTCGCAAGAAACGC
1 ACCATAAACACATTCTCTTCAT-TA-GGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GC
* * ** * * * * *
70046 TTTT-TTTCCCATAATTT-TTGTAAATTTTAAGTTCGTGTCTCAAATGAGACAAACAT-AGATTC
63 TTTTCTTT-CC--AATTTACTGTAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA-ATAC
*** ** * * *
70108 T-AGTAAGGATCTTCATTC-ATTTCGTGAGTAGGC
124 TCA-TACTAATCCACATTCTTTTTAG-GATTAGGC
* * * * * * * ** * * * **
70141 ACTATAAACGCATACTCCTCATTAGGATAAATGATATAGATGGTTTTCTTTTGGATGGAAATATT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAAGCTT
* *** * * * *
70206 TTCTTAGACTTGTTTTCCT-TAAAATCAAAGTTTGTC-CTTTAAATGAGACAAGCATTG-ATTCT
65 TTCTT--TC-CAATTTACTGTAAAATCAAAGTTTGTCTC-TTAAATAAGACAAACA-TGAATACT
* * ** * *
70268 CGTA-AAAGTCTC-CATTCTTTCCAAGATT-GGG
125 CATACTAA-TC-CACATTCTTTTTAGGATTAGGC
* * * * * *
70299 AGCTAAAAACACATTCCCATCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCT
1 A-CCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCT
* * ** * *
70364 TTTCTTTCTAACGTTGTTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACATGAAT-CTTA
64 TTTCTTTCCAA-TTTACTG-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * *
70428 TACTAATCCCCCTTCTTTTTAGGATTAGCC
127 TACTAATCCACATTCTTTTTAGGATTAGGC
* * * * * *** * *
70458 ACCATAAACATAGTCTTTTGA-TACGGATACAGGATAAAAATGATTTGGTTTCGCTAAGAATGCT
1 ACCATAAACACATTCTCTTCATTA-GGATACATGATATTGATGCTTTGGTTTCGC-AAGAAAGCT
* * * * * * * * *
70522 TTT-TTCCCACAATTT-TTGTAGATTCGATGTTCGTGC-CTTAAATGAGACAAACATGGAT--T-
64 TTTCTT-TC-CAATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACTC
* ** * * *
70581 ATAGTAAGGAGCATCATTCATTTCATGATTAGGC
126 ATACTAA--TCCA-CATTCTTTTTAGGATTAGGC
* * * ** * ** * * *
70615 ACTATAAACACATTCT-TCTCCTCAGGATGTATGATATTGATGGTTTTCTTTTGCATGAAAATCT
1 ACCATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGCT
* * * * * * ** *
70679 TTTCTTTGCCTCACTTTCCT-TAAAATCAAAGTTTGTATTTTAAATGAGATACGCATTG-ATTCT
64 TTTCTTT--C-CAATTTACTGTAAAATCAAAGTTTGTCTCTTAAATAAGACAAACA-TGAATACT
* * ** * * *
70742 CATA-AAAGTCTC-CATTCCTTCCAAGATTGGGA
125 CATACTAA-TC-CACATTCTTTTTAGGATTAGGC
* * * * * *
70774 AACAAAAACACATTCTCTTTATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCTT
* *
70839 TTCTTTCCAATGTTACTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCAT
65 TTCTTTCCAAT-TTACTG-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
*
70904 ACTAATCCACATTCTTTTTAGGATTGGGC
128 ACTAATCCACATTCTTTTTAGGATTAGGC
* * * * * * *
70933 ACCCTAAACATAGTCT-TCTCA-TACGGATACAAGATATTGATGATTTAGTTTTGCAAGAAATGC
1 ACCATAAACACATTCTCT-TCATTA-GGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GC
* * * * * * * * *
70996 TTTT-TTCCCACCAATTT-TTGTAAATTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGATTC
63 TTTTCTT---TCCAATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAC
*** ** * *
71058 -CAGTAAGGATCTTCATTC-ATTTCGTGATTAGGC
124 TCA-TACTAATCCACATTCTTTTTAG-GATTAGGC
* * * * * ** * **
71091 ACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATAGAAATATT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAAGCTT
* * * * * ** * *
71156 TTCTTTACCTCATTT-TTCGTAAAACCAAAGTTTGT-TCTTTAAATGAGGCATGCATTAATTCTC
65 TTCTTT-CC-AATTTACT-GTAAAATCAAAGTTTGTCTC-TTAAATAAGACAAACATGAATACTC
* * * ** * *
71219 GTA-AAAGTCTC-CATTCTTTCTAATATTGGGA
126 ATACTAA-TC-CACATTCTTTTTAGGATTAGGC
* * * * * *
71250 ACCA-AGAACACATTCCCTTTATTAGGATACATGACATTGAAGCTTTGGTGTCACAAGAGAAGCT
1 ACCATA-AACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCT
* * * * *
71314 TTTCTTTCCACCTTTATTGATAGAATCAAAGTTTATTTCTTAAATAAGACAAACATGAATACTCA
64 TTTCTTTCCA-ATTTACTG-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* *
71379 TACTAATCCAC-TTGTTTTTCTGGATTAGGC
127 TACTAATCCACATTCTTTTT-AGGATTAGGC
* * * *
71409 ACCATAAACAAATTCT-TCTAATAAGG-TACATGATATTGATGCTTTGGTTTCGCAAGAAACACT
1 ACCATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GCT
* * * * ** * * * *
71472 TTT-TTCCCACCAATTT-TTGTTAATTCAAA-TTTCGTGC-CCCAAATGAGACAAGCATGGATTC
64 TTTCTT---TCCAATTTACTGTAAAATCAAAGTTT-GT-CTCTTAAATAAGACAAACATGAATAC
*** ** * * *
71533 T-AGTAAGGATCTTCATTCATTTCATGATTAGGC
124 TCA-TACTAATCCACATTCTTTTTAGGATTAGGC
* * * * * * * *
71566 ACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGGTTAT-CTTTTGCATAGAAATCT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTT-TGGTTTCGCA-AGAAAGCT
** * * * ** *
71630 TTTCTTTATCTCGTTTTTC-GTAAAAGCAAAGTTTGTACT-TTAAATGAGACATGCATTG-ATTC
64 TTTC-TT-TC-CAATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-TGAATAC
* * * ** * *
71692 TCGTA-AAAGTCTC-CATTCTTTCTAATATTGGGA
124 TCATACTAA-TC-CACATTCTTTTTAGGATTAGGC
* * * * *
71725 ACCA-AGAACACATTCTCTTTATTAGGATACATGACATTGAAGCTTTGGTGTCCCAAGAGAAGCT
1 ACCATA-AACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCT
* * * *
71789 TTTCTTTCCACCTTTATTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCA
64 TTTCTTTCCA-ATTTACTG-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* *
71854 CACTAATCCACATT-TTTTTCTGGATTAGGC
127 TACTAATCCACATTCTTTTT-AGGATTAGGC
* * * *
71884 ACCATAAACAAATTCT-TCTAATAAGG-TACATGATATTGATGCTTTGGTTTCGCAAGAAACACT
1 ACCATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GCT
* * * * ** ** * * *
71947 TTT-TTCCCACCAATTT-TTGTTAATTCAAA-TTTCGTGC-CCCAAATGTGACAAGCATGGATTC
64 TTTCTT---TCCAATTTACTGTAAAATCAAAGTTT-GT-CTCTTAAATAAGACAAACATGAATAC
*** ** * * *
72008 T-AGTAAGGATCTTCATTCATTTCATGATTAGGC
124 TCA-TACTAATCCACATTCTTTTTAGGATTAGGC
* * * * ** ** ** *
72041 ACTATAAACACATTCTCCTCATTAGGATAAACGATATTGATAATTTTTTTTTC-CGTGGAAATCT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGAT-GCTTTGGTTTCGC-AAGAAAGCT
* * * ** * *
72105 TTTCTTTGCCTTATTTTCCT-TAAAATCAAAGTTTATACT-TTAAATAAGACATGCGTTG-ATTC
64 TTTCTTT-CC--AATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAAC-ATGAATAC
* * * * * *
72167 TCACA-AAAGTCTC-CATTCTTTTCAAGATTTGGA
124 TCATACTAA-TC-CACATTCTTTTTAGGATTAGGC
* * * * * *
72200 ACCAAAAACACATTCTTTTCATTAGGATACATGACATTGATGCTTCGGTGTCGCAAGTGAAGCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGCTT
** * * *
72265 TTCTTTCCACCGTTATTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACATGAATACCCAT
65 TTCTTTCCA-ATTTACTG-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* *
72329 ACTAATCCCCATTCTTTTCAGGATTAGGC
128 ACTAATCCACATTCTTTTTAGGATTAGGC
* * * * *
72358 ACCATAAACATAGTCT-TCTCATAAGGATACATGATCTTGATGCTTTGGTTTCGCAAGATACGC-
1 ACCATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCT
* * ** * * *
72421 TTTCTTCTCACCAATTT--TGTTAAAGT-ATGAGTTCAT-TGCTCAAATAAGACAAACATGGATT
64 TTTCTT-T--CCAATTTACTG-TAAAATCA-AAGTTTGTCT-CTTAAATAAGACAAACATGAATA
** *** ** * *
72482 CTTGTAGGGATCTTCATTC-ATTTCGTGATTAGGC
123 CTCATACTAATCCACATTCTTTTTAG-GATTAGGC
* * * * * * * ** * * *
72516 ACTATAAACACATTCTCCTCTTTAGGATAAAAGATATTTATGGTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAAGCTT
* * * ** *
72581 TTCTTTATCATATTTTCCT-TAAAAT-AAAGTTTGTACT-TTAAATGAGACATGCATTG-ATTCT
65 TTCTTT-CCA-A-TTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-TGAATACT
* * * ** * *
72642 CGTA-AAAGTCTC-CATTCTTTTCATCATTGGGA
125 CATACTAA-TC-CACATTCTTTTTAGGATTAGGC
* * * * * *
72674 ACCAAAAACAAATTCCCTTCATTAGGATACATTACATTGATGCTTTGG-TGCTGCAAGAAAGGCT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAA-GCT
* * * *
72738 TTTCTTTCCAACGTTA-TCGATGAAATCAAAATTTGTCTCTTAAATAAGACAAA-GTGGAATACT
64 TTTCTTTCCAA-TTTACT-G-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACT
*
72801 CATACTAATCC-CATTCTTTTCAGGATTAGGC
125 CATACTAATCCACATTCTTTTTAGGATTAGGC
* * * * * ** *
72832 ACCATTAACATAGTCTTCTT-A-TACAGATACAGGATATTGATGAATTGGTTTTGCAAGAAATGC
1 ACCATAAACACATTC-TCTTCATTA-GGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GC
* * * ** * * * *
72895 TTTT-TTCCCATAATTT-TTGTAAATTTTAAGTTCGTAC-CTCAAATGAGACAAACATGGAT--T
63 TTTTCTTTCC--AATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACT
* ** * *
72955 C-TAGCAAGGATCTTCATTC-ATTTCGTGATTAGGC
125 CATA-CTA--ATCCACATTCTTTTTAG-GATTAGGC
* * * * * * ** * * *
72989 ACTATAAACACATACTCCTCATTAGGATAAAAGATATTGATGGTTTTCTTTTGCATGAAAATCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGCTT
* *** * * * ** * *
73054 TTCATTGACTTGTTTTCCT-TAAAATCGAAGTTTGTACT-TTAAATGAGACATGCATTG-ATTCC
65 TTC-TT-TC-CAATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-TGAATACT
* * * * * * *
73116 CGTA-AAAGTCCCCATTCTTTTCAAGATTGGGA
125 CATACTAA-TCCACATTCTTTTTAGGATTAGGC
* * * * * *
73148 ACCAAAAACATATTCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGATGCATAG
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA---A-AG
* * * * *
73213 AAATCTTTTCTTTGCCTCACTTTCCT-TAAAATCAAAGTTTGTACT-TTAAATGAGACAAGCATT
62 ----CTTTTCTTT--C-CAATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATG
* * * * * *
73276 AATTCTCGTA-AAAGTCTC-CATTATTTCTTA-GATTGGGA
119 AATACTCATACTAA-TC-CACATTCTTT-TTAGGATTAGGC
* ** * * *
73314 ACCAAAAACACATTCTCTTCCCTAGGATACATGACATTGATGCTGTGGTGTT-GCAAGAGAGGCT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGT-TTCGCAAGA-AAGCT
* * *
73378 TTTCTTTCCAACGTTA-TCGATAAAATCAAAATTTGTCTCTTAAATAAGACAAA-GTGGAATACT
64 TTTCTTTCCAA-TTTACT-G-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACT
* *
73441 CATACTAATCC-CACTCTTTTCAGGATTAGGC
125 CATACTAATCCACATTCTTTTTAGGATTAGGC
* * * * **
73472 ACCATTAACATAGTCTTCTT-ATATA-GATACAGGATATTGATGAATTGGTTTCGCAAGAAATGC
1 ACCATAAACACATTC-TCTTCAT-TAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GC
* * * * * * ** * *
73535 TTTT-TTCCCATAATTT-TTGTGAATTCTAAGTTCGTGC-CACAAATGAGACAAACATGGAT--T
63 TTTTCTTTCC--AATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATACT
* ** *
73595 C-TAGTAAGGGTCTTCATTCATTTT-GTGATTAGGC
125 CATACTAA---TCCACATTCTTTTTAG-GATTAGGC
* * * * ** * * * *
73629 ACTATAAACACATACTCCTT-ATTAGGATAAATGATATTGATGGTTTTCTTTTGTATGGAAATCT
1 ACCATAAACACATTCT-CTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAAGCT
*** * * ** *
73693 TTTCTTTGACTTGTTTTCCT-TAAAATCAAAGTTTGTACT-TTAAATGAGACATGCATTG-ATTC
64 TTTCTTT--C-CAATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-TGAATAC
* * * ** * * *
73755 TTATAAC-AGTTTC-CATTCTTTCCAAGATTGGGA
124 TCAT-ACTA-ATCCACATTCTTTTTAGGATTAGGC
* *
73788 ACC-TAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAGGCT
1 ACCAT-AAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GCT
* * ** *
73852 TTTCTTTCCAACATTAGTGATAAAATCAAAGTTTGTCTCTTAAATAAGGTAAACTTGAATACTCA
64 TTTCTTTCCAA-TTTACTG-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
**
73917 TACTAATCCACATTCTTTTTAGGATTAACC
127 TACTAATCCACATTCTTTTTAGGATTAGGC
* * * * * * *
73947 ACCATAAACATAGTCTTTTTATAAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAA-CACT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGC-TT
* * * * * * * *
74011 TTCTTCACACCAATTT-TTGTAAATTCTAAGTTCG-CGCCTTAAATGAGACAAACATGGA-A-TC
65 TTCTT---TCCAATTTACTGTAAAATCAAAGTTTGTC-TCTTAAATAAGACAAACATGAATACTC
* ** * * *
74072 -TAGTAAGGGTCTTCGTTCATTTT-GTGATTAGGG
126 ATACTAA---TCCACATTCTTTTTAG-GATTAGGC
* * * * ** * * *
74105 ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGCTT
* * * * * *
74170 TTCTTTGCCTTATTTCCT-TAAAATCAAAGTTTGTACT-TTAAATGAGACAAGCATTG-ATTCGC
65 TTCTTT-CC-AATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-TGAATACTC
* * * * * *
74232 GTA-AAAGTCTC-CATT-TTTTCCAAGATTGGGA
126 ATACTAA-TC-CACATTCTTTT-TAGGATTAGGC
* * * * * **
74263 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGGTTTGGTGTCATAAGAGAAGCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCTT
** ** * *
74328 TTCTTTCTGACGT-CGTTGATAAAATC-AAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCA
65 TTCTTTCCAATTTAC--TG-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCA
* * *
74391 TACTAATCC-CTATTCTTTTCAAGATTAGCC
127 TACTAATCCAC-ATTCTTTTTAGGATTAGGC
* * *** * * * *
74421 ACCATAAACATATTCT-TCTGA-TATGGATATGGGATATTCATGATTTGGTTTCGCTAGGAATG-
1 ACCATAAACACATTCTCT-TCATTA-GGATACATGATATTGATGCTTTGGTTTCGC-AAGAAAGC
* ** * * * * * * * *
74483 TTTT-TTTCCCAAAATTT-TTGTCGATTCTATGTTCGTGC-CTCAAATGAGACAAACATGGATTC
63 TTTTCTTT-CC--AATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACATGAATAC
*** * *
74545 T-AGTAAGGAT-CATCATT-TATTTCGTGATTAGGC
124 TCA-TACTAATCCA-CATTCTTTTTAG-GATTAGGC
* * * * * * * ** * * *
74578 ACTATAAACACATTCTCCTCCTCAAGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAAGCTT
* * * * *
74643 TTCTTTGCCTCACTTT-CCGTAAAATCAAAGTTTGTACT-TTAAATGAGACAAGCATTG-ATTCT
65 TTCTTT--C-CAATTTACTGTAAAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-TGAATACT
* * * * * * * *
74705 CATA-AAAGGCTC-CGTTGTTTCTAAGATTGGGA
125 CATACTAA-TC-CACATTCTTTTTAGGATTAGGC
* * * * *
74737 ACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAGAGAGGCTT
1 ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGA-AAGCTT
* * *
74802 TTCTTTCCAACGTTA-TCGATAAAATCAAAATTTGTCTCTTAAATAAGACAAA-GTGGAATACTC
65 TTCTTTCCAA-TTTACT-G-TAAAATCAAAGTTTGTCTCTTAAATAAGACAAACAT-GAATACTC
* *
74865 ATACTAATCC-CATTCTTTTCAAGATTAGGC
126 ATACTAATCCACATTCTTTTTAGGATTAGGC
*
74895 ACCATTAACA
1 ACCATAAACA
74905 TTGTCTTCTT
Statistics
Matches: 3510, Mismatches: 1056, Indels: 711
0.67 0.20 0.13
Matches are distributed among these distances:
153 7 0.00
154 12 0.00
155 14 0.00
156 182 0.05
157 552 0.16
158 1135 0.32
159 1356 0.39
160 88 0.03
161 21 0.01
162 8 0.00
163 2 0.00
164 1 0.00
165 3 0.00
166 125 0.04
167 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (156 bp):
ACCATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGCTTT
TCTTTCCAATTTACTGTAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACT
AATCCACATTCTTTTTAGGATTAGGC
Found at i:73321 original size:166 final size:166
Alignment explanation
Indices: 73067--73371 Score: 468
Period size: 166 Copynumber: 1.8 Consensus size: 166
73057 ATTGACTTGT
* * *
73067 TTTCCTTAAAATCGAAGTTTGTACTTTAAATGAGACATGCATTGATTCCCGTAAAAGTCCCCATT
1 TTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTAATTCCCGTAAAAGTCCCCATT
* * * *
73132 CTTTTCAAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATAACATTGATGCTTTGGT
66 ATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATACATAACATTGATGCTGTGGT
73197 GTCGCAAGATGCATAGAAATCTTTTCTTTGCCTCAC
131 GTCGCAAGATGCATAGAAATCTTTTCTTTGCCTCAC
* *
73233 TTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTAATTCTCGTAAAAGTCTCCATT
1 TTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTAATTCCCGTAAAAGTCCCCATT
* * * *
73298 A-TTTCTTAGATTGGGAACCAAAAACACATTCTCTTCCCTAGGATACATGACATTGATGCTGTGG
66 ATTTTC-AAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATACATAACATTGATGCTGTGG
*
73362 TGTTGCAAGA
130 TGTCGCAAGA
73372 GAGGCTTTTC
Statistics
Matches: 124, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
165 4 0.03
166 120 0.97
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.34
Consensus pattern (166 bp):
TTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTAATTCCCGTAAAAGTCCCCATT
ATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCACTAGGATACATAACATTGATGCTGTGGT
GTCGCAAGATGCATAGAAATCTTTTCTTTGCCTCAC
Found at i:73827 original size:640 final size:639
Alignment explanation
Indices: 72567--73845 Score: 2112
Period size: 640 Copynumber: 2.0 Consensus size: 639
72557 GGTTTTCTTT
* * * *
72567 TGCATGGAAATCTTTTCTTTATCATATTTTCCTTAAAATAAAGTTTGTACTTTAAATGAGACATG
1 TGCATAGAAATCTTTTCTTTAGCATACTTTCCTTAAAATAAAGTTTGTACTTTAAATGAGACAAG
* * *
72632 CATTGATTCTCGTAAAAGTCTCCATTCTTTTCATCATTGGGAACCAAAAACAAATTCCCTTCATT
66 CATTAATTCTCGTAAAAGTCTCCATTATTTTCATCATTGGGAACCAAAAACAAATTCCCTTCACT
* * *
72697 AGGATACATTACATTGATGCTTTGGTGCTGCAAGAAAGGCTTTTCTTTCCAACGTTATCGATGAA
131 AGGATACATGACATTGATGCTGTGGTGCTGCAAGAAAGGCTTTTCTTTCCAACGTTATCGATAAA
*
72762 ATCAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCCCATTCTTTTCAGGAT
196 ATCAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCCCACTCTTTTCAGGAT
*
72827 TAGGCACCATTAACATAGTCTTCTTATACAGATACAGGATATTGATGAATTGGTTTTGCAAGAAA
261 TAGGCACCATTAACATAGTCTTCTTATACAGATACAGGATATTGATGAATTGGTTTCGCAAGAAA
* *
72892 TGCTTTTTTCCCATAATTTTTGTAAATTTTAAGTTCGTACCTCAAATGAGACAAACATGGATTCT
326 TGCTTTTTTCCCATAATTTTTGTAAATTCTAAGTTCGTACCACAAATGAGACAAACATGGATTCT
72957 AGCAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATACTCCTCATTAGGATAAAAG
391 AGCAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATACTCCTCATTAGGATAAAAG
*
73022 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCATTGACTTGTTTTCCTTAAAATCGAAGTTT
456 ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCATTGACTTGTTTTCCTTAAAATCAAAGTTT
* *
73087 GTACTTTAAATGAGACATGCATTGATTCCCGTAAAAGTCCCCATTCTTTTCAAGATTGGGAACCA
521 GTACTTTAAATGAGACATGCATTGATTCCCATAAAAGTCCCCATTCTTTCCAAGATTGGGAACCA
*
73152 AAAACATATTCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGA
586 AAAACACATTCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGA
*
73206 TGCATAGAAATCTTTTCTTT-GCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACA
1 TGCATAGAAATCTTTTCTTTAGCAT-ACTTTCCTTAAAAT-AAAGTTTGTACTTTAAATGAGACA
* * * *
73270 AGCATTAATTCTCGTAAAAGTCTCCATTA-TTTCTTAGATTGGGAACCAAAAACACATTCTCTTC
64 AGCATTAATTCTCGTAAAAGTCTCCATTATTTTCAT-CATTGGGAACCAAAAACAAATTCCCTTC
* * *
73334 CCTAGGATACATGACATTGATGCTGTGGTGTTGCAAGAGAGGCTTTTCTTTCCAACGTTATCGAT
128 ACTAGGATACATGACATTGATGCTGTGGTGCTGCAAGAAAGGCTTTTCTTTCCAACGTTATCGAT
73399 AAAATCAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCCCACTCTTTTCAG
193 AAAATCAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCCCACTCTTTTCAG
*
73464 GATTAGGCACCATTAACATAGTCTTCTTATATAGATACAGGATATTGATGAATTGGTTTCGCAAG
258 GATTAGGCACCATTAACATAGTCTTCTTATACAGATACAGGATATTGATGAATTGGTTTCGCAAG
* *
73529 AAATGCTTTTTTCCCATAATTTTTGTGAATTCTAAGTTCGTGCCACAAATGAGACAAACATGGAT
323 AAATGCTTTTTTCCCATAATTTTTGTAAATTCTAAGTTCGTACCACAAATGAGACAAACATGGAT
* * * *
73594 TCTAGTAAGGGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATACTCCTTATTAGGATAA
388 TCTAGCAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATACTCCTCATTAGGATAA
* * * *
73659 ATGATATTGATGGTTTTCTTTTGTATGGAAATCTTTTCTTTGACTTGTTTTCCTTAAAATCAAAG
453 AAGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCATTGACTTGTTTTCCTTAAAATCAAAG
** * **
73724 TTTGTACTTTAAATGAGACATGCATTGATTCTTATAACAGTTTCCATTCTTTCCAAGATTGGGAA
518 TTTGTACTTTAAATGAGACATGCATTGATTCCCATAAAAGTCCCCATTCTTTCCAAGATTGGGAA
* * *
73789 CCTAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
583 CCAAAAACACATTCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGA
73846 AAGGCTTTTC
Statistics
Matches: 592, Mismatches: 45, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
638 2 0.00
639 37 0.06
640 553 0.93
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (639 bp):
TGCATAGAAATCTTTTCTTTAGCATACTTTCCTTAAAATAAAGTTTGTACTTTAAATGAGACAAG
CATTAATTCTCGTAAAAGTCTCCATTATTTTCATCATTGGGAACCAAAAACAAATTCCCTTCACT
AGGATACATGACATTGATGCTGTGGTGCTGCAAGAAAGGCTTTTCTTTCCAACGTTATCGATAAA
ATCAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCCCACTCTTTTCAGGAT
TAGGCACCATTAACATAGTCTTCTTATACAGATACAGGATATTGATGAATTGGTTTCGCAAGAAA
TGCTTTTTTCCCATAATTTTTGTAAATTCTAAGTTCGTACCACAAATGAGACAAACATGGATTCT
AGCAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATACTCCTCATTAGGATAAAAG
ATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCATTGACTTGTTTTCCTTAAAATCAAAGTTT
GTACTTTAAATGAGACATGCATTGATTCCCATAAAAGTCCCCATTCTTTCCAAGATTGGGAACCA
AAAACACATTCCCTTCATTAGGATACATAACATTGATGCTTTGGTGTCGCAAGA
Found at i:74696 original size:474 final size:473
Alignment explanation
Indices: 73206--74937 Score: 2419
Period size: 474 Copynumber: 3.7 Consensus size: 473
73196 TGTCGCAAGA
*
73206 TGCATAGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
1 TGCATGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
* * ** **
73271 GCATTAATTCTCGTAAAAGTCTCCATTATTTCTTAGATTGGGAACCAAAAACACATTCTCTTCCC
66 GCATTGATTCTCATAAAAGTCTCCATTATTTCCAAGATTGGGAACCAAAAACACATTCTCTTCAT
* * *
73336 TAGGATACATGACATTGATGCTGTGGTGTTGCAAGAGAGGCTTTTCTTTCCAACGTTATCGATAA
131 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATCGATAA
* * *
73401 AATCAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCCCACTCTTTTCAGGA
196 AATCAAAATTTGTCTCTTAAATAAGACAAACTGGAATACTCATACTAATCCCATTCTTTTCAAGA
* * * *
73466 TTAGGCACCATTAACATAGTCTTCTTATATAGATACAGGATATTGATGAATTGGTTTCGCAAGAA
261 TTAGCCACCATAAACATAGTCTTCTTATATGGATACAGGATATTGATGATTTGGTTTCGCAAGAA
* *
73531 ATGCTTTTTTCCCATAATTTTTGTGAATTCTAAGTTCGTGCCACAAATGAGACAAACATGGATTC
326 ATGCTTTTTTCCCAAAATTTTTGTG-ATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTC
* *
73596 TAGTAAGGGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATACTCCTTATTAGGATAAAT
390 TAGTAAGGGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAAT
73661 GATATTGATGGTTTTCTTT
455 GATATTGATGGTTTTCTTT
* * *** *
73680 TGTATGGAAATCTTTTCTTTGACTTGTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAT
1 TGCATGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
* * * * *
73745 GCATTGATTCTTATAACAGTTTCCATTCTTTCCAAGATTGGGAACCTAAAACACATTCTCTTCAT
66 GCATTGATTCTCATAAAAGTCTCCATTATTTCCAAGATTGGGAACCAAAAACACATTCTCTTCAT
*
73810 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGA-AAGGCTTTTCTTTCCAACATTAGT-GAT
131 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAA-GCTTTTCTTTCCAACGTTA-TCGAT
* ** * *
73873 AAAATCAAAGTTTGTCTCTTAAATAAGGTAAACTTGAATACTCATACTAATCCACATTCTTTTTA
194 AAAATCAAAATTTGTCTCTTAAATAAGACAAACTGGAATACTCATACTAATCC-CATTCTTTTCA
* * * * * * *
73938 GGATTAACCACCATAAACATAGTCTTTTTATAAGGATACATGATATTGATGCTTTGGTTTTGCAA
258 AGATTAGCCACCATAAACATAGTCTTCTTATATGGATACAGGATATTGATGATTTGGTTTCGCAA
** * * * * * *
74003 GAAACACTTTCTTCACACCAATTTTTGTAAATTCTAAGTTCGCGCCTTAAATGAGACAAACATGG
323 GAAATGCTTTTTTCCCA-AAATTTTTGT-GATTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * *
74068 AATCTAGTAAGGGTCTTCGTTCATTTTGTGATTAGGGACTATAAACACATTCTCCTCATTAGGAT
386 ATTCTAGTAAGGGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
74133 AAATGATATTGATGGTTTTCTTT
451 AAATGATATTGATGGTTTTCTTT
* *
74156 TGCATGAAAATCTTTTCTTTGCCTTA-TTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
1 TGCATGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
* * * *
74220 GCATTGATTCGCGTAAAAGTCTCCATTTTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCAT
66 GCATTGATTCTCATAAAAGTCTCCATTATTTCCAAGATTGGGAACCAAAAACACATTCTCTTCAT
* ** ** ** *
74285 TAGGATACATGACATTGATGGTTTGGTGTCATAAGAGAAGCTTTTCTTTCTGACGTCGTTGATAA
131 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATCGATAA
* * *
74350 AATC-AAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCCTATTCTTTTCAAG
196 AATCAAAATTTGTCTCTTAAATAAGACAAACTGGAATACTCATACTAATCCC-ATTCTTTTCAAG
* * ** * * *
74414 ATTAGCCACCATAAACATATTCTTCTGATATGGATATGGGATATTCATGATTTGGTTTCGCTAGG
260 ATTAGCCACCATAAACATAGTCTTCTTATATGGATACAGGATATTGATGATTTGGTTTCGCAAGA
* *
74479 AATGTTTTTTTCCCAAAATTTTTGTCGATTCTATGTTCGTGCCTCAAATGAGACAAACATGGATT
325 AATGCTTTTTTCCCAAAATTTTTGT-GATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
* * * * * * * **
74544 CTAGTAAGGATCATCATTTATTTCGTGATTAGGCACTATAAACACATTCTCCTCCTCAAGATGCA
389 CTAGTAAGGGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAA
74609 TGATATTGATGGTTTTCTTT
454 TGATATTGATGGTTTTCTTT
*
74629 TGCATGGAAATCTTTTCTTTGCCTCACTTTCCGTAAAATCAAAGTTTGTACTTTAAATGAGACAA
1 TGCATGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
* * * *
74694 GCATTGATTCTCATAAAAGGCTCCGTTGTTTCTAAGATTGGGAACCAAAAACACATTCTCTTCAT
66 GCATTGATTCTCATAAAAGTCTCCATTATTTCCAAGATTGGGAACCAAAAACACATTCTCTTCAT
* *
74759 TAGGATACATGACATTGATGCTTTCGTGTCGCAAGAGAGGCTTTTCTTTCCAACGTTATCGATAA
131 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATCGATAA
*
74824 AATCAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCCCATTCTTTTCAAGA
196 AATCAAAATTTGTCTCTTAAATAAGACAAACTGGAATACTCATACTAATCCCATTCTTTTCAAGA
* * * ** *
74889 TTAGGCACCATTAACATTGTCTTCTTATACAGATACAGGATTTTGATGA
261 TTAGCCACCATAAACATAGTCTTCTTATATGGATACAGGATATTGATGA
74938 ATTGTGTTAG
Statistics
Matches: 1100, Mismatches: 148, Indels: 20
0.87 0.12 0.02
Matches are distributed among these distances:
473 143 0.13
474 538 0.49
475 271 0.25
476 148 0.13
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (473 bp):
TGCATGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAA
GCATTGATTCTCATAAAAGTCTCCATTATTTCCAAGATTGGGAACCAAAAACACATTCTCTTCAT
TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCCAACGTTATCGATAA
AATCAAAATTTGTCTCTTAAATAAGACAAACTGGAATACTCATACTAATCCCATTCTTTTCAAGA
TTAGCCACCATAAACATAGTCTTCTTATATGGATACAGGATATTGATGATTTGGTTTCGCAAGAA
ATGCTTTTTTCCCAAAATTTTTGTGATTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT
AGTAAGGGTCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATG
ATATTGATGGTTTTCTTT
Found at i:75256 original size:20 final size:20
Alignment explanation
Indices: 75233--75305 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
75223 ACAATTCAAA
75233 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
75253 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
75274 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
75294 GTATCGATACAT
1 GTATCGATACAT
75306 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:75277 original size:21 final size:21
Alignment explanation
Indices: 75251--75326 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
75241 ACATGTTGCA
75251 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
75272 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
75292 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
75313 TTGTATCGATACAT
1 ATGTATCGATACAT
75327 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:75284 original size:41 final size:41
Alignment explanation
Indices: 75233--75326 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
75223 ACAATTCAAA
*
75233 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
75274 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
75315 GTATCGATACAT
1 GTATCGATACAT
75327 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:75383 original size:13 final size:13
Alignment explanation
Indices: 75365--75390 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75355 TACAGCAAGT
75365 ATGTATCGATACA
1 ATGTATCGATACA
75378 ATGTATCGATACA
1 ATGTATCGATACA
75391 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:77640 original size:21 final size:21
Alignment explanation
Indices: 77607--77651 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
77597 TTGCAAGTTG
*
77607 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
77629 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
77649 AAA
1 AAA
77652 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:79475 original size:15 final size:15
Alignment explanation
Indices: 79455--79485 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
79445 TAAAAATGTC
*
79455 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
79470 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
79485 C
1 C
79486 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:81569 original size:20 final size:21
Alignment explanation
Indices: 81500--81577 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
81490 AATGTCCAAA
*
81500 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
81520 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
81545 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
81565 TTGTATCGATACA
1 ATGTATCGATACA
81578 GGGTGATTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
20 30 0.64
24 3 0.06
25 14 0.30
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:84037 original size:20 final size:20
Alignment explanation
Indices: 84014--84086 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
84004 ACAATTCAAA
84014 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
84034 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
84055 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
84075 GTATCGATACAT
1 GTATCGATACAT
84087 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:84058 original size:21 final size:21
Alignment explanation
Indices: 84032--84107 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
84022 ACATGTTGCA
84032 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
84053 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
84073 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
84094 TTGTATCGATACAT
1 ATGTATCGATACAT
84108 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:84065 original size:41 final size:41
Alignment explanation
Indices: 84014--84107 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
84004 ACAATTCAAA
*
84014 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
84055 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
84096 GTATCGATACAT
1 GTATCGATACAT
84108 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:84164 original size:13 final size:13
Alignment explanation
Indices: 84146--84171 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
84136 TACAGCAAGT
84146 ATGTATCGATACA
1 ATGTATCGATACA
84159 ATGTATCGATACA
1 ATGTATCGATACA
84172 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:86095 original size:474 final size:473
Alignment explanation
Indices: 84922--87606 Score: 3589
Period size: 474 Copynumber: 5.7 Consensus size: 473
84912 AGCTTTCAAA
* * * * * *
84922 TTGGATTCGCAAGAAATGCTTTTTTCCCATAATTTTTGTAAATTCTAAGTTCGTGCCACAAATCA
1 TTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGA
84987 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACA-TACT
66 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTA-T
* * * *
85051 CCTCACTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTCAACTTGTTTT
130 CCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTT
* ** *
85116 CCTTAAAATCAAAGTTTGTACTTTAAATGACACTTGCATTGATTCTTATAAAAGTTTCCATTCTT
195 CCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTT
* *
85181 TCCAAGCTTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
260 TCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* ** *
85246 ACAAGA-AACGCTTTTCTTTCCAACAATATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGTAA
325 GCAAGAGAA-GCTTTTCTTTCCAACGTTATTGATAAAATC-AAGTTTGTCTCTTAAATAAGGCAA
* * * * *
85310 ACTTGAATACTCATACTAACCCACATTCTTTTTAAGATTAACCACCATAAACATCGTCTTTTTAT
388 ACTTGAATACTCATACTAATCC-CATTCTTTTCAAGATTAGCCACCATAAACATAGTCTTCTTAT
* * *
85375 AAGGATACATGATATTGATGCT
452 ACGGATACAGGATATTGATGAT
* * *
85397 TTGGTTTCGCAAGAAACACTTTCTTCACACCAATTTTTGTAAATTCTAAGTTCG-CGCCTTC-AA
1 TTGGTTTCGCAAGAAACGCTTTTTTCCCA-CAATTTTTGTAAATTCTAAGTTCGTC-CC-TCAAA
* * * ** * *
85460 TGAGACAACCATGGATTCTAGTAGGGGTCTTCATTCATTTTGTGATTAGGCATTATAAAAACATT
63 TGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATT
** * * *
85525 CGCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAAGCTTTTCTTTGCCTTA-T
128 ATCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATT
* * * *
85589 TTCCTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCATTGATTCGCGTAAAAGTCTCCAATT
193 TTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCC-ATT
*
85654 -TTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGGTTTGGT
257 CTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * *
85718 GTCGTAAGAGAAGCTTTTCTTTCTAACGTTGTTGATAAAATCAAGTTTGTCTCTTAAATAAGGCA
322 GTCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAGTTTGTCTCTTAAATAAGGCA
* * *
85783 AACTTGAATACTCATACTAATCCCTATTCTTTTCAAGATCAGCCACCATAAACATATTCTTCTGA
387 AACTTGAATACTCATACTAATCCC-ATTCTTTTCAAGATTAGCCACCATAAACATAGTCTTCTTA
* *
85848 TACGAATATAGGATATTGATGAT
451 TACGGATACAGGATATTGATGAT
* * * * * * *
85871 ATGGTTTTGCTAGGAACGCTTTTTTCCCACAATTTTTTTAGATTCTATGTTCGTCCCTCAAATGA
1 TTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGA
85936 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATC
66 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATC
*
86001 CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGAATGGAAATCTTGTT-TTTACCTTATTTT
131 CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTT-TTCTTTACCTTATTTT
*
86065 CCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTGTT
195 CCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTT
* * * * *
86130 TCTAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGACGCTTTCGTGTC
260 TCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* ** * * *
86195 GCAAGAGAGGCTTTTCTTTCCAACGTTATCAATAAAATTAAAATTTGTCTCTTAAATAAGACAAA
325 GCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAA-TCAAGTTTGTCTCTTAAATAAGGCAAA
* * * * * *
86260 GTGGAATACTCATACTAATCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTTATAC
389 CTTGAATACTCATACTAATCCCATTCTTTTCAAGATTAGCCACCATAAACATAGTCTTCTTATAC
* *
86325 AGATACAGGATATTGATGAA
454 GGATACAGGATATTGATGAT
* * * * * * * *
86345 TTAGTTTCGCAAGAAATGCTTTTTTCCCATAATTTTTGTAAATTATAAGTTTGTGCCGCAAATCA
1 TTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGA
*
86410 GACAAACATGGATTCCAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACA-TACT
66 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTA-T
* * * *
86474 CTTCACTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTCGA-CTTGTTT
130 CCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTT-TACCTTATTT
* * *
86538 TCCTTAAAATCAAAGTTTGTACTTTAAATGACACATGCATTGATTCTTATAAAAGTTTCCATTCT
194 TCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCT
* * *
86603 TTCCAAGCTTAGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGT
259 TTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* ** *
86668 CACAAGA-AAGGCTTTTCTTTCCAACAATATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGTA
324 CGCAAGAGAA-GCTTTTCTTTCCAACGTTATTGATAAAATC-AAGTTTGTCTCTTAAATAAGGCA
* *
86732 AACTTGAATACTCATACTAATCCACATTCTTTTCAAGATTAACCACCATAAACATAGTCTTTTTA
387 AACTTGAATACTCATACTAATCC-CATTCTTTTCAAGATTAGCCACCATAAACATAGTCTTCTTA
* * *
86797 TAAGGATACATGATATTGATGCT
451 TACGGATACAGGATATTGATGAT
* * * *
86820 TTGGTTTCGCAAGAAACACTTTCTTCACACCAATTTTTGTAAATTCTAAGTTCG-CGCCTCCAAT
1 TTGGTTTCGCAAGAAACGCTTTTTTCCCA-CAATTTTTGTAAATTCTAAGTTCGTC-CCTCAAAT
* * **
86884 GAGACAAACATGGATTCTAGTAGGGGTCTTCATTCATTTTGTGATTAGGCACTATAAA-ACCATT
64 GAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACA-CATT
** * * * *
86948 CCCCTCATTAGGATAAATGATTTTGATGGTTTTCTTTTGCATGAAAAGCTTTTCTTTGCCTTA-T
128 ATCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATT
* * * * *
87012 TTCCTTAAAATCAAAGTTTGTACTTTAAATGAGATAAGCATTGATTCGCGTAAAAGTCTCCATTT
193 TTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTC
* * *
87077 TTTCCAAGTTTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGGTTTGGTG
258 TTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * ** ** *
87142 TCGTAAGAGAAACACTTCTTTCTGACGTTGTTGATAAAATCAAGTTTGTCTCTTAAATAAGGCAA
323 TCGCAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAGTTTGTCTCTTAAATAAGGCAA
* * * **
87207 ACTTGAATACTCATACTAATCCCCATTCTTTTCAAGATCAGCCAGCATAAACATATTCTTCAGAT
388 ACTTGAATACTCATACTAAT-CCCATTCTTTTCAAGATTAGCCACCATAAACATAGTCTTCTTAT
87272 ACGGATACAGGATATTGATGAT
452 ACGGATACAGGATATTGATGAT
* * * * * *
87294 TTGGTTTTGCTAGGAACGCTTTTTTCCTACAATTTTTGTAGATTCTATGTTCGTCCCTCAAATGA
1 TTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGA
* * ** *
87359 GACACACATGCATTCTAGTAAGGATCTTCATTCATTTCGCGATTAGGCACTATAAACACATTCTC
66 GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATC
* * * * *
87424 CTTATTAGGATAAATGATAATAATGGTTTTCTTTTGAATGGAAATCTTGTT-TTTACCATATTTT
131 CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTT-TTCTTTACCTTATTTT
87488 CCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTT
195 CCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTT
* * * *
87553 TCCAATATTAGGAACCAAAAATACATTCCCTTCATTTGGATACATGACATTGAT
260 TCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
87607 AGAATCAAAG
Statistics
Matches: 1917, Mismatches: 263, Indels: 61
0.86 0.12 0.03
Matches are distributed among these distances:
472 2 0.00
473 282 0.15
474 911 0.48
475 443 0.23
476 276 0.14
477 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (473 bp):
TTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGA
GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATC
CTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTC
CTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTTT
CCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCG
CAAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAATCAAGTTTGTCTCTTAAATAAGGCAAACT
TGAATACTCATACTAATCCCATTCTTTTCAAGATTAGCCACCATAAACATAGTCTTCTTATACGG
ATACAGGATATTGATGAT
Found at i:86780 original size:949 final size:946
Alignment explanation
Indices: 84927--87606 Score: 3626
Period size: 949 Copynumber: 2.8 Consensus size: 946
84917 TCAAATTGGA
* * * * *
84927 TTCGCAAGAAATGCTTTTTTCCCATAATTTTTGTAAATTCTAAGTTCGTGCCACAAATCAGACAA
1 TTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGAGACAA
84992 ACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACA-TACTCCTCA
66 ACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTA-TCCTCA
* * * *
85056 CTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTCAACTTGTTTTCCTTA
130 TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTA
* ** *
85121 AAATCAAAGTTTGTACTTTAAATGACACTTGCATTGATTCTTATAAAAGTTTCCATTCTTTCCAA
195 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTTTCCAA
* *
85186 GCTTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAG
260 GATTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
** * *
85251 A-AACGCTTTTCTTTCCAACAATATTGATAAAATCAAAGTTTGTCTCTTAAATAAGGTAAACTTG
325 AGAA-GCTTTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGGCAAACTTG
* * * *
85315 AATACTCATACTAACCCACATTCTTTTTAAGATTAACCACCATAAACATCGTCTTTTTATA-AGG
389 AATACTCATACTAATCC-CATTCTTTTTAAGATTAGCCACCATAAACATAGTCTTCTTATACA-G
* * * * *
85379 ATACATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCACACCAATTTTTGTAAATTCT
452 ATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCA-CAATTTTTGTAAATTCT
* * * * *
85444 AAGTTCGCGCCTTC-AATGAGACAACCATGGATTCTAGTAGGGGTCTTCATTCATTTTGTGATTA
516 AAGTTCGTGCC-TCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTA
* * * * * *
85508 GGCATTATAAAAACATTCGCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAAG
580 GGCACTATAAACACATTCTCTTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAAT
* * * *
85573 CTTTTCTTTGCCTTATTTCCTTAAAATCAAAGTTTATACTTTAAATGAGACAAGCATTGATTCGC
645 CTTTTC-TTGACTTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTC
* * *
85638 GTAAAAGTCTCCAATT-TTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATG
709 ATAAAAGTTTCC-ATTCTTTCCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* ** * ** *
85702 ACATTGATGGTTTGGTGTCGTAAGAGAAGCTTTTCTTTCTAACGTTGTTGATAAAATCAAGTTTG
773 ACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAATATTGATAAAATCAAGTTTG
*
85767 TCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCCTATTCTTTTCAAGATCAGCCACCAT
838 TCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCCTATTCTTTTCAAGATCAACCACCAT
* * *
85832 AAACATATTCTTCTGATACGAATATAGGATATTGATGATATGGT
903 AAACATAGTCTTCTGATAAGAATACAGGATATTGATGATATGGT
* * * * * *
85876 TTTGCTAGGAACGCTTTTTTCCCACAATTTTTTTAGATTCTATGTTCGTCCCTCAAATGAGACAA
1 TTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGAGACAA
85941 ACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATCCTCAT
66 ACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATCCTCAT
*
86006 TAGGATAAATGATATTGATGGTTTTCTTTTGAATGGAAATCTTGTT-TTTACCTTATTTTCCTTA
131 TAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTT-TTCTTTACCTTATTTTCCTTA
* *
86070 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTGTTTCTAA
195 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTTTCCAA
* * *
86135 GATTGGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGACGCTTTCGTGTCGCAAG
260 GATTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* ** * * * *
86200 AGAGGCTTTTCTTTCCAACGTTATCAATAAAATTAAAATTTGTCTCTTAAATAAGACAAAGTGGA
325 AGAAGCTTTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGGCAAACTTGA
* * *
86265 ATACTCATACTAATCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTTATACAGATA
390 ATACTCATACTAATCCCATTCTTTTTAAGATTAGCCACCATAAACATAGTCTTCTTATACAGATA
* * * * *
86330 CAGGATATTGATGAATTAGTTTCGCAAGAAATGCTTTTTTCCCATAATTTTTGTAAATTATAAGT
455 CAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGT
* * * * *
86395 TTGTGCCGCAAATCAGACAAACATGGATTCCAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
520 TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCAC
* *
86460 TATAAACACATACTCTTCACTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
585 TATAAACACATTCTCTTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
* * *
86525 CTTCGACTTGTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGACACATGCATTGATTCTTATAA
650 CTT-GACTT-TTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAA
* *
86590 AAGTTTCCATTCTTTCCAAGCTTAGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATT
713 AAGTTTCCATTCTTTCCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
86655 GATGCTTTGGTGTCACAAGA-AAGGCTTTTCTTTCCAACAATATTGATAAAATCAAAGTTTGTCT
778 GATGCTTTGGTGTCACAAGAGAA-GCTTTTCTTTCCAACAATATTGATAAAATC-AAGTTTGTCT
* *
86719 CTTAAATAAGGTAAACTTGAATACTCATACTAATCCAC-ATTCTTTTCAAGATTAACCACCATAA
841 CTTAAATAAGGCAAACTTGAATACTCATACTAATCC-CTATTCTTTTCAAGATCAACCACCATAA
* * * * * *
86783 ACATAGTCTTTTTATAAGGATACATGATATTGATGCTTTGGT
905 ACATAGTCTTCTGATAAGAATACAGGATATTGATGATATGGT
* * * *
86825 TTCGCAAGAAACACTTTCTTCACACCAATTTTTGTAAATTCTAAGTTCG-CGCCTCCAATGAGAC
1 TTCGCAAGAAACGCTTTTTTCCCA-CAATTTTTGTAAATTCTAAGTTCGTC-CCTCAAATGAGAC
* * ** **
86889 AAACATGGATTCTAGTAGGGGTCTTCATTCATTTTGTGATTAGGCACTATAAA-ACCATTCCCCT
64 AAACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACA-CATTATCCT
* * * *
86953 CATTAGGATAAATGATTTTGATGGTTTTCTTTTGCATGAAAAGCTTTTCTTTGCCTTA-TTTCCT
128 CATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCT
* * * * *
87017 TAAAATCAAAGTTTGTACTTTAAATGAGATAAGCATTGATTCGCGTAAAAGTCTCCATTTTTTCC
193 TAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTTTCC
* * *
87082 AAGTTTGGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGGTTTGGTGTCGT
258 AAGATTGGGAACCAAAAACACATTCTC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* ** ** * *
87146 AAGAGAAACACTTCTTTCTGACGTTGTTGATAAAA-TCAAGTTTGTCTCTTAAATAAGGCAAACT
322 AAGAGAAGCTTTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGGCAAACT
* * * * ** *
87210 TGAATACTCATACTAATCCCCATTCTTTTCAAGATCAGCCAGCATAAACATATTCTTCAGATACG
387 TGAATACTCATACTAAT-CCCATTCTTTTTAAGATTAGCCACCATAAACATAGTCTTCTTATACA
* * * * *
87275 GATACAGGATATTGATGATTTGGTTTTGCTAGGAACGCTTTTTTCCTACAATTTTTGTAGATTCT
451 GATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCT
* * * * *
87340 ATGTTCGTCCCTCAAATGAGACACACATGCATTCTAGTAAGGATCTTCATTCATTTCGCGATTAG
516 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAG
* * *
87405 GCACTATAAACACATTCTCCTT-ATTAGGATAAATGATAATAATGGTTTTCTTTTGAATGGAAAT
581 GCACTATAAACACATTCT-CTTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAAT
* *
87469 CTTGTT-TTTACCATATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTC
645 CTT-TTCTTGA-C-TTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTC
* * *
87533 TCATAAAAGTTTCCATTCTTTCCAATATTAGGAACCAAAAATACATTCCCTTCATTTGGATACAT
707 TCATAAAAGTTTCCATTCTTTCCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACAT
87598 GACATTGAT
772 GACATTGAT
87607 AGAATCAAAG
Statistics
Matches: 1514, Mismatches: 196, Indels: 42
0.86 0.11 0.02
Matches are distributed among these distances:
946 3 0.00
947 139 0.09
948 268 0.18
949 953 0.63
950 151 0.10
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (946 bp):
TTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTTCGTCCCTCAAATGAGACAA
ACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATCCTCAT
TAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTAA
AATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTTTCCAAG
ATTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
GAAGCTTTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGGCAAACTTGAA
TACTCATACTAATCCCATTCTTTTTAAGATTAGCCACCATAAACATAGTCTTCTTATACAGATAC
AGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTCTAAGTT
CGTGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACT
ATAAACACATTCTCTTCATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTC
TTGACTTTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAG
TTTCCATTCTTTCCAAGATTAGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
GCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAATATTGATAAAATCAAGTTTGTCTCTTAA
ATAAGGCAAACTTGAATACTCATACTAATCCCTATTCTTTTCAAGATCAACCACCATAAACATAG
TCTTCTGATAAGAATACAGGATATTGATGATATGGT
Found at i:91493 original size:422 final size:420
Alignment explanation
Indices: 90711--91554 Score: 1280
Period size: 422 Copynumber: 2.0 Consensus size: 420
90701 GTCGCAAGAG
* *
90711 AAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * *
90776 AGTCATACTAATCCGCTTTCTTTTCTGATTAGGCACCATAAACATAGTCTTCTCATAAGGATGCG
66 AGTCATACTAATCCACTTTCTTTTCTGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
** *
90841 TGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCTGCCAATTTTTGAAAAGTATAGTTC
131 TGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCACCAATTTTTGAAAAGCATAGTTC
* *
90906 ATTCCTCAAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTCGTTGGTAGACACTA
196 ATTCCTCAAATGAGACAAACACGAATTCTAGTAAGAATCTTCATTCATTTCGTTGGTAGACACTA
90971 TAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTTTCT
261 TAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTTTCT
*
91036 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAC-TCGCATTAATTCCCGTAAA
326 TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATAAGACAT-GCATTAATTCCCGTAAA
91100 AGACTCCATTCCTTCCAAGATTGGGAACCAA
390 AGACTCCATTCCTTCCAAGATTGGGAACCAA
** * *
91131 AAGCTGTTCTCCCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATGAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
91196 AGTCATACTAATCCACTTTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAT
66 AGTCATACTAATCCACTTTCTTTTCT-GATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * ** * * *
91261 ATGTTGTCGATGCTTTGGTTTCATAAGAAATGCTTTCTTCCCACCAATTTTTGAAAAGCATAAGT
130 ATGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCACCAATTTTTGAAAAGCAT-AGT
* *
91326 TCATTCCTCAAATTAGACAAACAACG-ATTCTAGTAAGAATCTTCATTCATTTCG-TGGTTAGGC
194 TCATTCCTCAAATGAGACAAAC-ACGAATTCTAGTAAGAATCTTCATTCATTTCGTTGG-TAGAC
* * * * *
91389 ATTATAAACGCATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCTTGGAAATTTT
257 ACTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTT
* * * * *
91454 TTCTTTGTCTTATTTTTCTTAAAATCAAAGTTTGTACTTTAAATAAGACATGTATTGATTCTCGT
322 TTCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATAAGACATGCATTAATTCCCGT
* * *
91519 AAAAGTCTCCATTCTTTTCAAGATTGGGAACCAA
387 AAAAGACTCCATTCCTTCCAAGATTGGGAACCAA
91553 AA
1 AA
91555 ACACATTCCT
Statistics
Matches: 381, Mismatches: 38, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
420 84 0.22
421 89 0.23
422 205 0.54
423 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (420 bp):
AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
AGTCATACTAATCCACTTTCTTTTCTGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
TGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCACCAATTTTTGAAAAGCATAGTTC
ATTCCTCAAATGAGACAAACACGAATTCTAGTAAGAATCTTCATTCATTTCGTTGGTAGACACTA
TAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTTTCT
TTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATAAGACATGCATTAATTCCCGTAAAA
GACTCCATTCCTTCCAAGATTGGGAACCAA
Found at i:91735 original size:205 final size:205
Alignment explanation
Indices: 91419--91790 Score: 575
Period size: 205 Copynumber: 1.8 Consensus size: 205
91409 AATAGGATAA
* * * * * * *
91419 ATGATATTGATGGTTTTCTTTTGCTTGGAAATTTTTTCTTTGTCTTATTTTTCTTAAAATCAAAG
1 ATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAG
* * * *
91484 TTTGTACTTTAAATAAGACATGTATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAA
66 TTTGTACTTTAAATAAGACAAGCATTGATTCTCGCAAAAGTCTCCATTCTTTCCAAGATTGGGAA
*
91549 CCAAAAACACATTC-CTTTCATAAGGATATATGACATTAATTAGGCATTATAAACACATTCTTCT
131 CCAAAAACACATTCTC-TTCATAAGGATACATGACATTAATTAGGCATTATAAACACATTCTTCT
91613 CCTCAGCAAGC
195 CCTCAGCAAGC
* *
91624 ATGATATTGATGGTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTCAAATCAAAG
1 ATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAG
* *
91689 TTTGTACTTTAAATGAGACAAGCATTGATTCTCGCAAAAGTCTCCATTCTTTCCAAGATTGGTAA
66 TTTGTACTTTAAATAAGACAAGCATTGATTCTCGCAAAAGTCTCCATTCTTTCCAAGATTGGGAA
*
91754 CCAAAAACACATTCTCTTCATTAGGATACATGACATT
131 CCAAAAACACATTCTCTTCATAAGGATACATGACATT
91791 CATGCTTCAG
Statistics
Matches: 149, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
205 148 0.99
206 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (205 bp):
ATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAG
TTTGTACTTTAAATAAGACAAGCATTGATTCTCGCAAAAGTCTCCATTCTTTCCAAGATTGGGAA
CCAAAAACACATTCTCTTCATAAGGATACATGACATTAATTAGGCATTATAAACACATTCTTCTC
CTCAGCAAGC
Found at i:92323 original size:158 final size:157
Alignment explanation
Indices: 91680--92335 Score: 385
Period size: 158 Copynumber: 4.1 Consensus size: 157
91670 ACTTTCCTTC
* * * *
91680 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCGCAAAAGTCTCCATTCTTTCCAA
1 AAATCAAAGTTTGT-CTTTAAATGAAACAAACATTGATTCTCGTAAAAGTCTCCATTTTTTCCAA
* * * **
91745 GATTGGTAACCAAAAACACATTCTCTTCATTAGGATACATGACATTCATGCTTCAGTGTCGCAAG
65 GATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * *
91810 AGAAGCTTTTCCTTCTAACGTTGTTGATA
130 AGAAGCTTTTCTTTCTTACATT-TTGATA
* * * *
91839 AAATCAAAGTTTGTCTCTTAAAT-AAGGCAAAC-TTGAATACTCATACTAA-TC-CACATTTTTT
1 AAATCAAAGTTTGTCT-TTAAATGAA-ACAAACATTG-ATTCTCGTA-AAAGTCTC-CATTTTTT
* * * * * * ** * * ** * *
91900 TCAGGGTT--AACCACCATAAACATAGTCTTTTTATAAGGATACATGGTATTGATCCTTTGGTTT
61 CCAAGATTGGAA--ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* **
91963 CGCAAGA-AA-CACTTTC-TTCCCACCAATTTT-AGTA
124 CGCAAGAGAAGC-TTTTCTTTCTTA-C-ATTTTGA-TA
* * * * * * * * * ***
91997 AATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAGGGGTCAT-CATTCATTTT-
1 AAATCAAAGTTTG-TCTTTAAATGAAACAAACATTGATTCTCGTAAAAGTC-TCCATT--TTTTC
** * * * * * * ** * *
92060 -GTGATTAGG-CACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGGTTTTCTTTT
62 CAAGATT-GGAAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * **
92122 TCATGAAAATCTTTTCTTTGCATT--ATTTCCATA
125 GCAAGAGAAGCTTTTCTTT-C-TTACATTTTGATA
* *
92155 AAATCAAAGTTTGTACTTTAAATGAAACAAGCATTGATTCGCGTAAAAGTCTCCATTTTTTCCAA
1 AAATCAAAGTTTGT-CTTTAAATGAAACAAACATTGATTCTCGTAAAAGTCTCCATTTTTTCCAA
92220 GATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
65 GATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
92285 AGAAGCTTTTCTTTCTTACATTGTTGATA
130 AGAAGCTTTTCTTTCTTACATT-TTGATA
92314 AAATC-AAGTTTGTCTCTTAAAT
1 AAATCAAAGTTTGTCT-TTAAAT
92336 AAGGCAAACT
Statistics
Matches: 358, Mismatches: 100, Indels: 79
0.67 0.19 0.15
Matches are distributed among these distances:
156 6 0.02
157 15 0.04
158 216 0.60
159 111 0.31
160 9 0.03
161 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (157 bp):
AAATCAAAGTTTGTCTTTAAATGAAACAAACATTGATTCTCGTAAAAGTCTCCATTTTTTCCAAG
ATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
GAAGCTTTTCTTTCTTACATTTTGATA
Found at i:92667 original size:474 final size:476
Alignment explanation
Indices: 91587--92742 Score: 1715
Period size: 474 Copynumber: 2.4 Consensus size: 476
91577 TATGACATTA
* * * *
91587 ATTAGGCATTATAAACACATTCTTCTCCTCAGCAAGCATGATATTGATGGTTTTTTTTTGCATGA
1 ATTAGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGA
*
91652 AAATCTTTTCTTTGCCTCACTTTCCTTCAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
66 AAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
* * *
91717 TTCTCGCAAAAGTCTCCATTCTTTCCAAGATTGGTAACCAAAAACACATTCTCTTCATTAGGATA
131 TTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATA
* *
91782 CATGACATTCATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACGTTGTTGATAAAATCAAA
196 CATGACATTGATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACATTGTTGATAAAATCAAA
* * *
91847 GTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTTTTTTCAGGGTTAACC
261 GTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCTTTTCAAGATTAACC
* * * * ** *
91912 ACCATAAACATAGTCTTTTTATAAGGATACATGGTATTGATCCTTTGGTTTCGCAAGAAACACTT
326 ACCATAAACATAGTCTTCTGATAAGGATACAAGATATTGATCAATTGGTTTCACAAGAAACACTT
91977 TCTTCCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTA
391 TCTTCCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTA
* *
92042 GGGGTCATCATTCATTTTGTG
456 AGGATCATCATTCATTTTGTG
* * * ** *
92063 ATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTTCATGA
1 ATTAGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGA
* * * *
92128 AAATCTTTTCTTTGCATTA-TTTCCATAAAATCAAAGTTTGTACTTTAAATGAAACAAGCATTGA
66 AAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
* *
92192 TTCGCGTAAAAGTCTCCATTTTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATA
131 TTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATA
** * *
92257 CATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCTTACATTGTTGATAAAATC-AA
196 CATGACATTGATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACATTGTTGATAAAATCAAA
* * *
92321 GTTTGTCTCTTAAATAAGGCAAACTTGAGTACTCATACTAATCCCCATTCTTTTCAAGATTAGCC
261 GTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCTTTTCAAGATTAACC
* * * * * *
92386 ACCATAAACATAGTCTTCTGATACGGATACAAGATTTTGATGAATTGGTTTCACTAGGAATACTT
326 ACCATAAACATAGTCTTCTGATAAGGATACAAGATATTGATCAATTGGTTTCACAAGAAACACTT
* * * * * * *
92451 TTTTCCCA-TAATTTTTGTAGATTCTATGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTA
391 TCTTCCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTA
92515 AGGATCATCATTCATTTTGTG
456 AGGATCATCATTCATTTTGTG
*
92536 ATTAGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGG
1 ATTAGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGA
* *
92601 AAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAGATGCATTGA
66 AAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
* * * * *
92666 TTCTCGTAAAAGTCTCCATTCTTTCTAACATTGGGAACCAATAACACATTCCCTTTATTAGGATA
131 TTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATA
* *
92731 CAAGACGTTGAT
196 CATGACATTGAT
92743 AGAATCAAAG
Statistics
Matches: 603, Mismatches: 76, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
473 144 0.24
474 229 0.38
475 158 0.26
476 72 0.12
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
ATTAGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGA
AAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGA
TTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATA
CATGACATTGATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACATTGTTGATAAAATCAAA
GTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCTTTTCAAGATTAACC
ACCATAAACATAGTCTTCTGATAAGGATACAAGATATTGATCAATTGGTTTCACAAGAAACACTT
TCTTCCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTA
AGGATCATCATTCATTTTGTG
Found at i:93134 original size:432 final size:430
Alignment explanation
Indices: 92307--93174 Score: 1136
Period size: 432 Copynumber: 2.0 Consensus size: 430
92297 TTCTTACATT
* * * * * *
92307 GTTGATAAAATCAAGTTTGTCTCTTAAATAAGGCAAACTTGAGTACTCATACTAATCCCCATTCT
1 GTTGATAAAATCAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTCT
* * * * *
92372 TTTCAAGATTAGCCACCATAAACATAGTCTTCTGATACGGATACAAGATTTTGATGAATTGGTTT
66 TTTCAAGATTAGCCACCATAAACAAAGTCTTCTAATAAGGATACAAGATATTGATGAATTCGTTT
* * * ** * *
92437 CACTAGGAATACTTTTTTCCCATAATTTTTGTAGATTCTATGTTCGTGCCTCAAATGAGATAAAC
131 CACAAGAAACACTTTCATCCCATAATTTTTGTAGATTCAATGTTCGTGCCCCAAATGAGATAAAC
* ** *
92502 ATGGATTCTAGTAAGGATCATCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCCTCA
196 AAGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCCTCA
** * * *
92567 GGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAA
261 GGATAAACGATATTAATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCCTAAAAA
* * **
92632 TCAAAGTTTGTACTTTAAATGAGAGATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCTAACAT
326 TCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCACAAAAGTCTCCATTCTTTCTAACAT
*
92697 TGGGAACCAATAACACATTCCCTTT-ATTAGGATACAAGAC
391 TGGGAACCAAAAACACATT-CCTTTCATTAGGATACAAGAC
*
92737 GTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTC
1 GTTGATAAAATC-AAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTC
** * * * * * **
92802 TTTTCTGGATTAGGCACCGTAAACAAATTCTTCTAATAAGGATATATGATATTGATGCTTTCGTT
65 TTTTCAAGATTAGCCACCATAAACAAAGTCTTCTAATAAGGATACAAGATATTGATGAATTCGTT
*
92867 TCGCAAGAAACACTTTCATCCCACTAATTTTTTGTTA-ATTCAAAT-TTCGTGCCCCAAATGAGA
130 TCACAAGAAACACTTTCATCCCA-TAA-TTTTTG-TAGATTC-AATGTTCGTGCCCCAAATGAGA
* * *
92930 TAAGCAAGGATTCTAGTAAGGATCTTTATTCATTTCATGATTAGGCACTATAAACACATTCTCCT
191 TAAACAAGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTATAAACACATTCTCCT
* * * *
92995 CATTC-GGATAAACGATATTAATGGTTTT-TTTTGCGTGGAAATCTTTTCTTTGCCTTATTTTCC
256 C-CTCAGGATAAACGATATTAATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCC
*
93058 TAAAAATCAAAGTTTGTACTTTAAAAGAGACATGCGTTGATTCTCACAAAAGTCTCCATTCTTT-
320 TAAAAATCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCACAAAAGTCTCCATTCTTTC
* *
93122 TCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
385 T-AACATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGAC
*
93169 ATTGAT
1 GTTGAT
93175 GCTTTGGTGT
Statistics
Matches: 376, Mismatches: 54, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
430 11 0.03
431 120 0.32
432 134 0.36
433 105 0.28
434 6 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (430 bp):
GTTGATAAAATCAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTCT
TTTCAAGATTAGCCACCATAAACAAAGTCTTCTAATAAGGATACAAGATATTGATGAATTCGTTT
CACAAGAAACACTTTCATCCCATAATTTTTGTAGATTCAATGTTCGTGCCCCAAATGAGATAAAC
AAGGATTCTAGTAAGGATCATCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCCTCA
GGATAAACGATATTAATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCCTAAAAA
TCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCACAAAAGTCTCCATTCTTTCTAACAT
TGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGAC
Found at i:94042 original size:474 final size:471
Alignment explanation
Indices: 92740--94089 Score: 1642
Period size: 475 Copynumber: 2.8 Consensus size: 471
92730 ACAAGACGTT
* * *
92740 GATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTCTTT
1 GATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCC-CATTCTTT
* * * * * *
92805 TCT-GGATTAGGCACCGTAAACAAATTCTTCTAATAAGGATATATGATATTGATGCTTTCGTTTC
65 T-TAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTC
* * * * * *
92869 GCAAGAAACA-C-TTTCATCCCACTAATTTTTTGTTAATTCAAATTTCGTGCCCCAAATGAGATA
129 ACAAGAAA-AGCTTTTC-TCCCA-TAA-TTTTTGTAAATTC-TATTTCCT-CCTCAAATGAGACA
* * *
92932 AGCAAGGATTCTAGTAAGGATCTTTATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCA
188 AACAAGGATTCTAGTAAGGATCTTCATTCA-TTCTTGATTAGGCACTATAAACACATTCTCCTCA
* * * * *
92997 TTCGGATAAACGATATTAATGG-TTTTTTTTGCGTGGAAATCTTTTCTTTGCCTTATTTTCCTAA
252 TTAGGATAAATGATATTAATGGTTTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTTCCTTA
* * * **
93061 AAATCAAAGTTTGTACTTTAAAAGAGACATGCGTTGATTCTCACAAAAGTCTCCATTCTTTTCAA
317 AAATCAAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAA
* * *
93126 GATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
382 GATTGGGAACCAAAAACACATACCCTTCATTAGGATACATGACATTGAGGCTTTGGTGTCGCAAG
* * * *
93191 AGAAGCTTTTCTTTCCACCGTTGTT
447 AGAAGCTTTTCTTCCCAACGTTATC
* *
93216 GATAGAATC-AAAGTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTAATCCCCATTCTTT
1 GATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAAT-CCCATTCTTT
* *
93280 TAAGGATTAGGCACCATAAACATAGTCTT-TTCATAAGGATACATGATCTTGATGCTTTGGTTTC
65 TTAGGATTAGGCACCATAAACATAGTCTTCTT-ATAAGGATACATGATATTGATGCTTTGGTTTC
* * * * * * *
93344 ACAGGATACGCTTTCTTCTCACC--AATTTTTGTAAAGTATGAGTTTACTGCTCAAATGAGACAA
129 ACAAGAAAAGC-TT-TTCTC-CCATAATTTTTGTAAATTCT-A-TTTCCTCCTCAAATGAGACAA
* * * * *
93407 ACATGGATTCTTGTAGGGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTT
189 ACAAGGATTCTAGTAAGGATCTTCATTCATTCT-TGATTAGGCACTATAAACACATTCTCCTCAT
* * * * *
93472 TAGGATAAATGATATTTAT-GTGTTTCTTTTGCCTGGAAATCTTTTCTTTGTCATATTTTCCTTA
253 TAGGATAAATGATATTAATGGT-TTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTTCCTTA
* *
93536 AAATCAAAGTTTGTC-CTTTAAATGAGACATGCACTGATTCTTGTAAAAGTCTCCATTCTTTTCA
317 AAATCAAAGTTTG-CACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCA
* * * *
93600 ACATTGGGAACCAAAAACACATACCCTTCATTGGGATACGTTACATTGAGGCTTTGGTGTCGCAA
381 AGATTGGGAACCAAAAACACATACCCTTCATTAGGATACATGACATTGAGGCTTTGGTGTCGCAA
*
93665 GAGACGCTTTTCTTCCCAACGTTATC
446 GAGAAGCTTTTCTTCCCAACGTTATC
* * * *
93691 GATAAAATCAAAATTTGCCTCTTAAATAAGACAAAGC-TGAAAACTCATACTAATCCCAATCTTT
1 GATAGAATCAAAATTTGTCTCTTAAATAAGACAAA-CATGAATACTCATACTAATCCCATTCTTT
* * ** **
93755 TTAGGATTAGGCACCATTAACATAGTCTTCTTATACGGATACGGGATATTGATGAATTGGTTTCA
65 TTAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCA
* * *
93820 CAAGAAAAGCTTTTCTCCCATAATTTTTGTAAATTCTATCTCCCTACCTCAAATAAGACAAACAC
130 CAAGAAAAGCTTTTCTCCCATAATTTTTGTAAATTCTAT-TTCCT-CCTCAAATGAGACAAACAA
* * *
93885 GAATTCTAGTAAGGATCTTCATTCACTTCTTGATTAGGCATTATAAACACATACTCCTCATTAGG
193 GGATTCTAGTAAGGATCTTCATTCA-TTCTTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * *
93950 ATAAATGATATTGATGGTTTTTTTTTGCATGGAAATCTTTTCTTTGACTTGTTTCCCTTAAAATC
257 ATAAATGATATTAATGGTTTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTTCCTTAAAATC
* * * *
94015 AAAGTTTGCAGTTTAAATGAGACATGCATTGATTCCCGTAAAAGACTCCATTCCTTTCAAGATTG
322 AAAGTTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTG
94080 GGAACCAAAA
387 GGAACCAAAA
94090 GCTGTTCTCC
Statistics
Matches: 745, Mismatches: 105, Indels: 50
0.83 0.12 0.06
Matches are distributed among these distances:
472 3 0.00
473 13 0.02
474 301 0.40
475 367 0.49
476 52 0.07
477 4 0.01
478 5 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (471 bp):
GATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCATTCTTTT
TAGGATTAGGCACCATAAACATAGTCTTCTTATAAGGATACATGATATTGATGCTTTGGTTTCAC
AAGAAAAGCTTTTCTCCCATAATTTTTGTAAATTCTATTTCCTCCTCAAATGAGACAAACAAGGA
TTCTAGTAAGGATCTTCATTCATTCTTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAA
ATGATATTAATGGTTTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTTCCTTAAAATCAAAG
TTTGCACTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAA
CCAAAAACACATACCCTTCATTAGGATACATGACATTGAGGCTTTGGTGTCGCAAGAGAAGCTTT
TCTTCCCAACGTTATC
Found at i:95401 original size:474 final size:476
Alignment explanation
Indices: 94109--96917 Score: 3403
Period size: 474 Copynumber: 5.9 Consensus size: 476
94099 CCCACCATTT
* * * * *
94109 TTGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAATAGTCATACTAATCCACT-TTA
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCACTATTC
* * * * * * *
94173 TTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGTTGTCGATGCTTTGGTT
66 TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGATGATTTGGTT
** * * *
94238 TCG-TAAGAAACGCTTTCTTCCCACCAATTTTT-TATAAGCATAAGTTCATTCCTCAAATTAGAC
131 TCGCT-AGAAACGCTTTCTTCCCACCAATTTTTGTA-ATTC-TAAGTTCGTCCCTCAAATGAGAC
* * * * *
94301 AAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATTATAAACACATTCTCC-C
193 AAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC
** * * * * * *
94365 TAAAAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGAAAATTTTTTCTTTGTCTTATTTTTCT
258 -ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCT
* * *
94430 TAAAATCAAAGTTTGCACTTTAAAT-AGGACATGCATTGATTTTCATAAAAGTCTCCATTCTTTT
322 TAAAATCAAAGTTTGTACTTTAAATGA-GACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTT
*
94494 CAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
386 CAACATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * ** * * *
94559 AAAAGAAGCTGTTCTCCCCACCATCA
451 AAGAGAAGCTTTTCTTTCCAACGTTA
** * * *
94585 TTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCGCT-TTC
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCACTATTC
* * * * * *
94649 TTTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGGT
66 TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGATGATTTGGTT
* * * * *
94713 TC-ATAAGAAACGCTTTCTTCCCACCAATTTTTGATAA-GCATAAGTTCATTCCTCAAATTAGAC
131 TCGCT-AGAAACGCTTTCTTCCCACCAATTTTTG-TAATTC-TAAGTTCGTCCCTCAAATGAGAC
* * * * *
94776 AAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATTATAAACACATTCTCC-C
193 AAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC
* * * * * *
94840 TAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTCTTTGTCTTATTTTTCT
258 -ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCT
** * * *
94905 TAAAATCAAAGTTTACACTTTAAAT-AGGACATGCATTGATTTTCATAAAGGTCTCCATTCTTTT
322 TAAAATCAAAGTTTGTACTTTAAATGA-GACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTT
* *
94969 CAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGT
386 CAACATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* *
95034 AAGAGAAGCTTTTCTTTCTAACGTTG
451 AAGAGAAGCTTTTCTTTCCAACGTTA
* *
95060 TTGATAAAATC-AAGTTTGTCTCTTAAACAAGGCAAACTTGAATACTCATACTAATCC-CTATTC
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCACTATTC
* * * * * * *
95123 TTTTCAAGATCAGCCACCATAAACATATTCTTCTGATACGAATATAGGATATTGATGATATGGTT
66 TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGATGATTTGGTT
* * * * *
95188 TTGCTAGGAACGCTTTTTTCCCA-CAATTTTTTTAGATTCTATGTTCGTCCCTCAAATGAGACAA
131 TCGCTAGAAACGCTTTCTTCCCACCAATTTTTGTA-ATTCTAAGTTCGTCCCTCAAATGAGACAA
* *
95252 ACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATCCTCAT
195 ACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCAT
* *
95317 TAGGATAAATGATATTGATGGTTTTCTTTTGAATGGAAATCTTGTT-TTTACCTTATTTTCCTTA
260 TAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTT-TTCTTTGCCTTATTTTCCTTA
* *
95381 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATT-GTTTCTA
324 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTTC-A
* * * *
95445 AGATTGGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAA
388 ACATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
*
95510 GAGAGGCTTTTCTTTCCAACGTTA
453 GAGAAGCTTTTCTTTCCAACGTTA
** * * * *
95534 TCAATAAAATTAAAATTTGTCTCTTAAATAAGACAAAGTGGAATACTCATACTAATCC-C-ATTC
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCACTATTC
* * * * * * *
95597 TTTTTAGGATTAGGCACCATTAACATAGTCTTCTTATACA-GATACAGGATATTGATGAATTAGT
66 TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATA-AGGATACAGGATATTGATGATTTGGT
* * * * * * * *
95661 TTCGCAAGAAATGCTTTTTTCCCA-TAATTTTTGTAAATTATAAGTTCGTGCCGCAAATTAGACA
130 TTCGCTAGAAACGCTTTCTTCCCACCAATTTTTGT-AATTCTAAGTTCGTCCCTCAAATGAGACA
* * * *
95725 AACATGGATTCCAGTAAGGATCTTCATTCATTTCATGATTAGGCACCATAAACACATACTCCTCA
194 AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
* * * *
95790 CTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTCGACTTGTTTTCCTTA
259 TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTA
* * * * *
95855 AAATCAAAGTTTGTACTTTAAATGACACATGCATTGATTCTTATAAAAGTTTCCATTCTTTCCAA
324 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTTCAA
* *
95920 GC-TTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAA
389 -CATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
**
95984 GA-AAGGCTTTTCTTTCCAACAATA
453 GAGAA-GCTTTTCTTTCCAACGTTA
**
96008 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGTAAACTTGAATACTCATACTAATCCAC-ATTC
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCACTATTC
* * * * *
96072 TTTTCAAGATTAACCACCATAAACATAGTCTTTTTATAAGGATACATGATATTGATGCTTTGGTT
66 TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGATGATTTGGTT
* * * *
96137 TCGCAAGAAACACTTTCTTCACACCAATTTTTGTAAATTCTAAGTTCG-CGCCTCCAATGAGACA
131 TCGCTAGAAACGCTTTCTTCCCACCAATTTTTGT-AATTCTAAGTTCGTC-CCTCAAATGAGACA
* * * *
96201 AACATGGATTCTAGTAGGGGTCTTCATTCATTTTGTGATTAGGCACTATAAA-ACCATTCCCCTC
194 AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACA-CATTCTCCTC
* * * *
96265 ATTAGGATAAATGATTTTGATTGTTTTCTTTTGCATGAAAAGCTTTTCTTTGCCTTA-TTTCCTT
258 ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTT
* * *
96329 AAAATCAAAGTTTGTACTTTAAATGAGATAAGCATTGATTCGCGTAAAAGTCTCCATT-TTTTCC
323 AAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTT-C
** * * *
96393 AAGTTTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGGTTTGGTGTCGTA
387 AACATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* ** ** *
96458 AGAGAAACACTTCTTTCTGACGTTG
452 AGAGAAGCTTTTCTTTCCAACGTTA
* *
96483 TTGATAAAATC-AAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCC-CCATTC
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCACTATTC
* * * ** *
96546 TTTTCAAGATCAGCCAGCATAAACATATTCTTCAGATACGGATACAGGATATTGATGATTTGGTT
66 TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGATGATTTGGTT
* * * * *
96611 TTGCTAGGAACGTTTTTTTCCCA-CAATTTTTGTAGATTCTATGTTCGTCCCTCAAATGAGACAA
131 TCGCTAGAAACGCTTTCTTCCCACCAATTTTTGTA-ATTCTAAGTTCGTCCCTCAAATGAGACAA
* * *
96675 ACATGCATTCTAGTAAGGATCTTCATTCATTTCGCGATTAGGCACTATAAACACATTCTCCTTAT
195 ACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCAT
* * * *
96740 TAGGATAAATGATATTAATGGTTTTCTTTTGAATGGAAATCTTGTT-TTTACCATATTTTCCTTA
260 TAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTT-TTCTTTGCCTTATTTTCCTTA
* *
96804 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTTTCCAA
324 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTTCAA
* * * *
96869 GATTAGGAACCAAAAATACATTCCCTTCATTTGGATACATGACATTGAT
389 CATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGAT
96918 AGAATCAAAG
Statistics
Matches: 2052, Mismatches: 247, Indels: 70
0.87 0.10 0.03
Matches are distributed among these distances:
472 1 0.00
473 147 0.07
474 970 0.47
475 725 0.35
476 207 0.10
477 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
TTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCACTATTC
TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACAGGATATTGATGATTTGGTT
TCGCTAGAAACGCTTTCTTCCCACCAATTTTTGTAATTCTAAGTTCGTCCCTCAAATGAGACAAA
CATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATT
AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTAAA
ATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTTCAACA
TTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
AAGCTTTTCTTTCCAACGTTA
Found at i:95561 original size:159 final size:160
Alignment explanation
Indices: 95379--96917 Score: 437
Period size: 158 Copynumber: 9.7 Consensus size: 160
95369 TTATTTTCCT
* *
95379 TAAAATCAAAGTTTGTACT-TTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTGTTTC
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCATAAAAGTTTCCATTCTTTC
*
95443 TAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGC
66 TAAGATTAGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGC
* *
95508 AAGAGAGGCTTTTCTTTCCAACGTTATCAA
131 AAGAAAGGCTTTTCTTTCCAACATTATCAA
* * * * * *
95538 TAAAATTAAAATTTGT-CTCTTAAATAAGACAA--AGTGGAATACTCATACTAA--TCCCATTCT
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCA-TGG-ATTCTCATA-AAAGTTTCCATTCT
* * * * * * * * * ** *
95598 TTTTAGGATTAGGCACCATTAACATAGTCTTCTT-A-TACAGATACAGGATATTGATGAATTAGT
63 TTCTAAGATTAGGAACCATAAACACATTC-TCTTCATTA-GGATACATGACATTGATGCTTTCGT
* * * ***
95661 TTCGCAAGAAATGCTTTT-TTCCCATA-ATT-TTTG
126 GTCGCAAGAAAGGCTTTTCTTTCCA-ACATTATCAA
* * * ** * * *
95694 T-AAATTATAAGTTCGTGC-CGCAAATTAGACAAACATGGATTC-CAGT-AAGGATCTT-CATTC
1 TAAAATCA-AAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCA-TAAAAG-T-TTCCATTC
* * * * * * * *
95754 ATTTC-ATGATTAGGCACCATAAACACATACTCCTCACTAGGATAAATGATATTGATGGTTTTC-
62 -TTTCTAAGATTAGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGAT-GCTTTCG
* * * * * * * **
95817 TTTTGCATGGAAA-TCTTTTC-TT-CGACTTGTTTTCCT
125 TGTCGCA-AGAAAGGCTTTTCTTTCCAAC--ATTATCAA
* * * *
95853 TAAAATCAAAGTTTGTACT-TTAAATGACACATGCATTGATTCTTATAAAAGTTTCCATTCTTTC
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCATAAAAGTTTCCATTCTTTC
* * * * * *
95917 CAAGCTTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTCAC
66 TAAGATTAGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGC
* **
95982 AAGAAAGGCTTTTCTTTCCAACAATATTGA
131 AAGAAAGGCTTTTCTTTCCAACATTATCAA
* ** * * * * * *
96012 TAAAATCAAAGTTTGT-CTCTTAAATAAGGTAAACTTGAATACTCATACTAA--TCCACATTCTT
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCATA-AAAGTTTC-CATTCTT
*** * * * * * * * *
96074 T-TCAAGATTAACCACCATAAACATAGTCTTTTTATAAGGATACATGATATTGATGCTTTGGTTT
64 TCT-AAGATTAGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGT
** * ***
96138 CGCAAGAAACAC-TTTC-TTCACACCAATT-TTTG
128 CGCAAGAAAGGCTTTTCTTTC-CAAC-ATTATCAA
* * * ** ** * ***
96170 TAAATTCTAAGTTCGCGC-CTCCAATGAGACAAACATGGATTCT-AGTAGGGGTCTT-CATTCAT
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCA-TAAAAGT-TTCCATTC-T
** * * * * * ** *
96232 TT-TGTGATTAGGCACTATAAA-ACCATTCCCCTCATTAGGATAAATGATTTTGATTGTTTTC-T
63 TTCTAAGATTAGGAACCATAAACA-CATTCTCTTCATTAGGATACATGACATTGA-TGCTTTCGT
* * * * ** **
96294 TTTGCATGAAAAGCTTTTCTTTGCC-TTATT-TCCT
126 GTCGCAAGAAAGGCTTTTCTTT-CCAACATTATCAA
* * * * * *
96328 TAAAATCAAAGTTTGTACT-TTAAATGAGATAAGCATTGATTCGCGTAAAAGTCTCCATTTTTTC
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCATAAAAGTTTCCATTCTTTC
* * * * * *
96392 CAAGTTTGGGAACCAAAAACACATTC-CTTTCATTAGGATACATGACATTGATGGTTTGGTGTCG
66 TAAGATTAGGAACCATAAACACATTCTC-TTCATTAGGATACATGACATTGATGCTTTCGTGTCG
* * ** ** * * **
96456 TAAGAGAA-ACACTTCTTTCTGACGTTGTTGA
130 CAAGA-AAGGCTTTTCTTTCCAACATTATCAA
* * * * * * * **
96487 TAAAATC-AAGTTTGT-CTCTTAAATAAGGCAAACTTGAATACTCATACTAA-TCCCCATTCTTT
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCATA-AAAGTTTCCATTCTTT
* ** * * * * * * * *
96549 -TCAAGATCAGCCAGCATAAACATA-T-TCTTCAGATACGGATACAGGATATTGATGATTTGGTT
65 CT-AAGATTAGGAACCATAAACACATTCTCTTCA-TTA-GGATACATGACATTGATGCTTTCGTG
* * * * * ***
96611 TTGCTAGGAACG-TTTT-TTTCCCACAATT-TTTG
127 TCGCAAGAAAGGCTTTTCTTTCCAAC-ATTATCAA
* * * * * * * * * *
96643 TAGATTCTATGTTCGT-CCCTCAAATGAGACAAACATGCATTCT-AGT-AAGGATCTT-CATTCA
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCA-TAAAAG-T-TTCCATTC-
** * * * * * *
96704 TTTC-GCGATTAGGCACTATAAACACATTCTCCTT-ATTAGGATAAATGATATTAATGGTTTTC-
62 TTTCTAAGATTAGGAACCATAAACACATTCT-CTTCATTAGGATACATGACATTGAT-GCTTTCG
* * * * * **
96766 TTTTG-AATGGAAA-TCTTGTT-TTTACC-ATATTTTCCT
125 TGTCGCAA--GAAAGGCTT-TTCTTT-CCAACATTATCAA
*
96802 TAAAATCAAAGTTTGTACT-TTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTCTTTC
1 TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCATAAAAGTTTCCATTCTTTC
* * * * *
96866 CAAGATTAGGAACCAAAAATACATTCCCTTCATTTGGATACATGACATTGAT
66 TAAGATTAGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGAT
96918 AGAATCAAAG
Statistics
Matches: 974, Mismatches: 312, Indels: 188
0.66 0.21 0.13
Matches are distributed among these distances:
154 1 0.00
155 10 0.01
156 46 0.05
157 161 0.17
158 389 0.40
159 334 0.34
160 29 0.03
161 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (160 bp):
TAAAATCAAAGTTTGTACTCTTAAATGAGACAAGCATGGATTCTCATAAAAGTTTCCATTCTTTC
TAAGATTAGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGC
AAGAAAGGCTTTTCTTTCCAACATTATCAA
Found at i:96125 original size:949 final size:945
Alignment explanation
Indices: 94109--101180 Score: 4286
Period size: 949 Copynumber: 7.4 Consensus size: 945
94099 CCCACCATTT
* * * * * * *
94109 TTGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAATAGTCATACTAATCCACTTTAT
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCT
* * * * *
94174 TTTCTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGTTGTCGATGCTTTGGTTT
66 TTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
* * * *
94239 CG-TAAGAAACGCTTTCTTCCCACCAATTTTTTATAA-GCATAAGTTCATTCCTCAAATTAGACA
131 CGCT-AGAAACGCTTTCTTCCCACCAATTTTTT-TAATTC-TAAGTTCGTCCCTCAAATGAGACA
* * * * *
94302 AACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATTATAAACACATTCTCC-CT
193 AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC-
** * * * * *
94366 AAAAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGAAAATTTTTTCTTTGTCTTATTTTTCTT
257 ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTT
* * *
94431 AAAATCAAAGTTTGCACTTTAAAT-AGGACATGCATTGATTTTCATAAAAGTCTCCATTCTTT-T
322 AAAATCAAAGTTTGTACTTTAAATGA-GACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCT
* *
94494 CAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
386 -AAGATTGGGAACCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* * ** * * * ** *
94559 AAAAGAAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
449 AAGAGAAGCTCTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGACAAA-A
* *
94624 TGAATAGTCATACTAATCCGCTTTCTTTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATA-A
513 TGAATACTCATACTAATCC-CATTCTTTT-TAGATTAGGCACCATAAACATAGTCTTCTCATACA
* * * * ** * *
94687 GGATACATGATATCGATGCTTTGGGTTCATAAGAAACGCTTTCTTCCCACCAATTTTTG-ATAAG
576 -GATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCA-CAATTTTTGTA-AAT
* * * * * * *
94751 CATAAGTTCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCT
638 TATAAGTTCGTCCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGAT
* * *
94816 TAGGCATTATAAACACATTCTCC-CTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGA
703 TAGGCACTATAAACACATTCTCCTC-AATAGGATAAATGATATTGATGGTTTTCTTTTGCATGGA
* * * **
94880 AATTTTTTCTTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAAT-AGGACATGCATTGA
767 AATCTTTTC-TTGACTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGA-GACATGCATTGA
* * * *
94944 TT-TTCATAAAGGTCTCCATTCTTTTCAA-CATTGGGAGCCAAAAACACATTCCCTTCATTAGGA
830 TTCTT-ATAAAAGTTTCCATTCTTTCCAAGC-TTGGGAACCAAAAACACATTCCCTTCATTAGGA
** * ** *
95007 TACATGACATTGATGCTTTGGTGTCGTAAGAGAAGCTTTTCTTTCTAACGTTG
893 TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAATA
*
95060 TTGATAAAATC-AAGTTTGTCTCTTAAACAAGGCAAACTTGAATACTCATACTAATCC-CTATTC
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCAC-ATTC
* * * * * * * * *
95123 TTTTCAAGATCAGCCACCATAAACATATTCTTCTGATACGAATATAGGATATTGATGATATGGTT
65 TTTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTT
* * * *
95188 TTGCTAGGAACGCTTTTTTCCCA-CAATTTTTTTAGATTCTATGTTCGTCCCTCAAATGAGACAA
130 TCGCTAGAAACGCTTTCTTCCCACCAATTTTTTTA-ATTCTAAGTTCGTCCCTCAAATGAGACAA
* *
95252 ACATGGATTCTAGTAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTATCCTCAT
194 ACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCAT
* * *
95317 TAGGATAAATGATATTGATGGTTTTCTTTTGAATGGAAATCTTGTT-TTTACCTTATTTTCCTTA
259 TAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTT-TTCTTTGCCTTATTTTCCTTA
* *
95381 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTTTCCATTGTTTCTAA
323 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAA
* *
95446 GATTGGGAACCATAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGCAAG
388 GATTGGGAACCAAAAACACATTC-CTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * ** * *
95511 AGAGGCTTTTCTTTCCAACGTTATCAATAAAATTAAAATTTGTCTCTTAAATAAGACAAAGTGGA
452 AGAAGCTCTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGACAAAAT-GA
* *
95576 ATACTCATACTAATCCCATTCTTTTTAGGATTAGGCACCATTAACATAGTCTTCTTATACAGATA
516 ATACTCATACTAATCCCATTCTTTTTA-GATTAGGCACCATAAACATAGTCTTCTCATACAGATA
* * * *
95641 CAGGATATTGATGAATTAGTTTCGCAAGAAATGCTTTTTTCCCATAATTTTTGTAAATTATAAGT
580 CAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTATAAGT
* * * *
95706 TCGTGCCGCAAATTAGACAAACATGGATTCCAGTAAGGATCTTCATTCATTTCATGATTAGGCAC
645 TCGTCCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCAC
* * *
95771 CATAAACACATACTCCTCACTAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
710 TATAAACACATTCTCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTT
* *
95836 CTTCGACTTGTTTTCCTTAAAATCAAAGTTTGTACTTTAAATGACACATGCATTGATTCTTATAA
775 CTT-GACTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTTATAA
*
95901 AAGTTTCCATTCTTTCCAAGCTTGGGAACCAAAAACACATTCTCTTCATTAGGATACATGACATT
839 AAGTTTCCATTCTTTCCAAGCTTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATT
95966 GATGCTTTGGTGTCACAAGA-AAGGCTTTTCTTTCCAACAATA
904 GATGCTTTGGTGTCACAAGAGAA-GCTTTTCTTTCCAACAATA
*
96008 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGTAAACTTGAATACTCATACTAATCCACATTCT
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCT
* * *
96073 TTTCAAGATTAACCACCATAAACATAGTCTTTTTATAAGGATACATGATATTGATGCTTTGGTTT
66 TTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
* * * * *
96138 CGCAAGAAACACTTTCTTCACACCAATTTTTGTAAATTCTAAGTTCG-CGCCTCCAATGAGACAA
131 CGCTAGAAACGCTTTCTTCCCACCAATTTTT-TTAATTCTAAGTTCGTC-CCTCAAATGAGACAA
* * * *
96202 ACATGGATTCTAGTAGGGGTCTTCATTCATTTTGTGATTAGGCACTATAAA-ACCATTCCCCTCA
194 ACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACA-CATTCTCCTCA
* * *
96266 TTAGGATAAATGATTTTGATTGTTTTCTTTTGCATGAAAAGCTTTTCTTTGCCTTA-TTTCCTTA
258 TTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTA
* * * * *
96330 AAATCAAAGTTTGTACTTTAAATGAGATAAGCATTGATTCGCGTAAAAGTCTCCATTTTTTCCAA
323 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAA
* * *
96395 GTTTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGGTTTGGTGTCGTAAG
388 GATTGGGAACCAAAAACACATTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * ** * * * *
96460 AGAAACACTTCTTTCTGACGTTGTTGATAAAA-TCAAGTTTGTCTCTTAAATAAGGCAAACTTGA
452 AGAAGCTCTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGACAAA-ATGA
* * * * * ** *
96524 ATACTCATACTAATCCCCATTCTTTTCAAGATCAGCCAGCATAAACATATTCTTCAGATACGGAT
516 ATACTCATACTAAT-CCCATTCTTTT-TAGATTAGGCACCATAAACATAGTCTTCTCATACAGAT
* * * * * * *
96589 ACAGGATATTGATGATTTGGTTTTGCTAGGAACGTTTTTTTCCCACAATTTTTGTAGATTCTATG
579 ACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTATAAG
* * *
96654 TTCGTCCCTCAAATGAGACAAACATGCATTCTAGTAAGGATCTTCATTCATTTCGCGATTAGGCA
644 TTCGTCCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCA
* * * *
96719 CTATAAACACATTCTCCTTATTAGGATAAATGATATTAATGGTTTTCTTTTGAATGGAAATCTTG
709 CTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTT-
* * * *
96784 TT-TTTACCATATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCAT
773 TTCTTGA-CTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTTAT
* * * *
96848 AAAAGTTTCCATTCTTTCCAAGATTAGGAACCAAAAATACATTCCCTTCATTTGGATACATGAC-
837 AAAAGTTTCCATTCTTTCCAAGCTTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACA
96912 ---A--------T-T----------G---------------ATA
902 TTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAATA
* * * *
96919 --G----AATCAAAGTTTATCTCTTGAATAAGACAAACATGAATACTCATACTAATCCACATTCT
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCT
** * * * *
96978 TTTCTGGATTAGGCACCATAAACAAATTCTTCTAATAAGGATACATGATATTGATGCTTTGGTTT
66 TTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
* * * ** * * *
97043 CTCAAGAAACACTTTCTTCCCACCAATTTTTGTTTGTTCAAATTTCGTGCCC-CAAATGAGATAA
131 CGCTAGAAACGCTTTCTTCCCACCAATTTTT-TTAATTCTAAGTTCGT-CCCTCAAATGAGACAA
* * * *
97107 GCAAGGATTCTAGAAAGGATCTTCATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCAT
194 ACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCAT
* * * * * *
97172 TAGGACAAACGATATTGATCGTTTTTTTTTTTGCGTGGAAA---------T--C---TTTT-CTT
259 TAGGATAAATGATATTGAT-G-GTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTT
* * * **
97222 AAAATCAAAGTTTGTACTTTAAA-AAGGACATGCGTTGATTCTCGCAAAAGTCTCCATTCTTT-T
322 AAAATCAAAGTTTGTACTTTAAATGA-GACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCT
* * *
97285 CAAGATTGGGAACCAGAAACATATTCCTTTCATTAGGATATATGACATTAATTAGGCATTATAAA
386 -AAGATTGGGAACCAAAAACACATTCC-TTCATTAGGATACATGAC----ATT--G----AT---
* ** * * * * * * *
97350 CACATTTTTCTCCTCAGGAAGCATGATTTTAATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGC
436 -GC--TTTGGT-GTC-GCAAG-A-G-----AA-GCTCTTC-TTT-C----CAA-C-GTT-ATTG-
**** * * * * *
97415 CTCACTTTCCTTCAAATCAAAGTTTGTACT-TTAAATGAGACAAGCATTG-ATTCTCGTA-AAAG
478 ---A-TAAAATT---A---AAGTTTGT-CTCTTAAATAAGACAA--AATGAATACTCATACTAA-
** * * * * * * *
97477 TCTCCATTCTTTCCAAGATT-GGTAACCAAAAACACATTC-TCTTCATTA-GGATACATGACATT
529 TC-CCATTCTTT-TTAGATTAGG-CACCATAAACATAGTCTTC-TCA-TACAGATACAGGATATT
* * * * ** * * * * *
97539 CATGCTTCGGTGTCGCAAGAGAA-GCTTTTCCTTCTAAC-GTTGTAGATAAAATCA-AAGTTTGT
589 GATGATTTGGTTTCGCAAGA-AACGCTTTT--TTCCCACAATTTTTG-T-AAATTATAAGTTCGT
* * * * * * * *** ** * ** *
97601 CTCTTAAATAAGGCAAACTTGAATACTCA-TACTAATCCACATTCTTTTCAG-GATTAACCACCA
649 CCCTCAAATTAGACAAACATGGATTCT-AGTAAGGATCTTCATTCATTTC-GTGATTAGGCACTA
* * * ** * * ** * * *
97664 TAAACATAGTCT-TTTTATAAGGATACATGATATTGATGCTTTGGTTTCGCA-AGAAACACTTTC
712 TAAACACATTCTCCTCAAT-AGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAA-TC-TT-
* * ** * * * * * * ** *
97727 TTCATT-TCGTGATTAGGCAC-TATAAA-CACATTTTCCT-CTTTAGGATAAATGATATTTATGG
773 TTC-TTGAC-TTATT-TTC-CTTA-AAATCAAAGTTT-GTACTTTA-AAT-GA-GACATGCATTG
* * **** ** ** * ** * * **
97788 TTTTCTTTTGCCTGGAAATCTTTTCTTTGTCATA--TT---TTCCTTAAAATCAAAGTTTGTACT
829 -ATTCTTAT-AAAAG-TTTCCATTCTTT-CCA-AGCTTGGGAACC--AAAAACACA--TT-CCCT
* * * * * * *** ** *
97848 TTA-AACGAGACATG-CATTGAT--TCT--CGT-A-AA-AGTCTCCATTCTTTTCAACAATGA
884 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAAT-A
* * * ** * * ** * * ** * * *
97902 --GAACCAAAAACACA--TTCCCTTCATTAGGATACGTTACA-TTG-ATGCTTTGGTGTCGCAAG
1 TTG-A-TAAAATCAAAGTTTGTC-TC-TTA-AATAAGGCAAACTTGAATAC--TCAT-AC-TAAT
** * * * * * * * * * *
97961 AGACGCTTTTTTTCCCAACG-TTATCGA-TA-AAATCAAAATTTTCCTCTTAAATAA-GACAAAG
57 CCAC-ATTCTTTT--CAA-GATTAGCCACCATAAA-CATAGTCTT-CTC----ATAAGGATACA-
* * * * *** *** * * ** ** * * * *
98022 CTGAAAACTCATACTAATCCCATTCTTTTTAGGATTAGGC-ACCATTAACA-TAGTCTTCTT-AT
111 -TG-ATATTGATGCT--T-TGGTT-TCGCTA-GA-AACGCTTTC-TTCCCACCAATTTTTTTAAT
* ** * *** * * * * **** * **
98084 ACGGA-TACG-GGAT--ATTGATG---AA-TTGGTTTC-A-CAA-GAAAAGC-TT-TTTTC-CCA
167 TCTAAGTTCGTCCCTCAAATGA-GACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGA
***** * * * * * *
98135 -TAATTTTTGTAAATTCTATC-TTCCTACCTGA-AATGAGACAAACACGA-ATTCTAGTAAGGAT
231 TTAGGCACTATAAA--C-A-CATT-CT-CCTCATTA-G-GA-TAA-ATGATA-T-T-G-ATGG-T
* * ** * * *** * ** * *
98196 CTTCATTCACTT-CGTGAATAGGC-ATTATAAACACATACTCCTCATTAGGATAAATGATATTGA
281 TTTC-TT---TTGCATGAA-AATCTTTTCTTTGC-CTTA-TTTTCCTT---A-AAATCA-A---A
** ** * * *** * * *** *
98259 TGGTTT-TTTTTTGCATG-GA-AATC-TT--TTCT-TTGACTTGTTTCCCTTAAAATCAAAG-TT
331 --GTTTGTACTTTAAATGAGACAAGCATTGATTCTCAT-AAAAGTCTCCATT-CTTTCTAAGATT
* * *** * * * * * ** * * ** * * * *
98316 TGCAGTTTAAATGAGACATGCATTGATTCCCG-TAAAAGAC-TCCATTCCTTTCAAGAT-TGGGA
392 GGGA-ACCAAA-AACACATTCCTTCATT-AGGATACATGACATTGA-TGCTTT---GGTGTCGCA
* * * ** * * * * * *
98378 ACCAAAAGCTGTTCTCCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAACA
450 A-GAGAAGCTCTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGACAAA-A
* * *
98443 TGAATAGTCATACTAATCCACTTTATTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATA-A
513 TGAATACTCATACTAATCC-CATTCTTTT-TAGATTAGGCACCATAAACATAGTCTTCTCATACA
* * * * * * * *
98507 GGATACATGTTGTCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTT-TATAAG
576 -GATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCA-CAATTTTTGTA-AAT
* * * * * * *
98571 CATAAGTTCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGT
638 TATAAGTTCGTCCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGAT
* * * *
98636 TAGGCATTATAAACACATTCTCC-CTAAAAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGA
703 TAGGCACTATAAACACATTCTCCTC-AATAGGATAAATGATATTGATGGTTTTCTTTTGCATGGA
* * * *
98700 AATTTTTTCTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAAT-AGGACATGCATTGA
767 AATCTTTTC-TTGACTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGA-GACATGCATTGA
* * *
98764 TT-TTCATAAAAGTCTCCATTCTTTTCAA-CATTGGGAGCCAAAAACACATTCCCTTCATTAGGA
830 TTCTT-ATAAAAGTTTCCATTCTTTCCAAGC-TTGGGAACCAAAAACACATTCCCTTCATTAGGA
* * * * * *
98827 TACATGACATTGATGCTTTGGTGTCGCAAAAGAAGCTGTTC-TCCCCACCATCA
893 TACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAAT-A
** * * * * * *
98880 TTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCGCTTTGT
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCT
* * * *
98945 TTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGGTT
66 TTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
* * * * *
99009 CG-TAAGAAACGCTTTCTTCCCACCAATTTTTGATAA-GCATAAGTTCATTCCTCAAATTAGACA
131 CGCT-AGAAACGCTTTCTTCCCACCAATTTTT-TTAATTC-TAAGTTCGTCCCTCAAATGAGACA
* * * * *
99072 AACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATTATAAACACATTCTCC-CT
193 AACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTC-
* * * * * * *
99136 AATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTCTTTGTCTTATTTTTCTT
257 ATTAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTT
** * *
99201 AAAATCAAAGTTTACACTTTAAAT-AGGACATGCATTGATTTTCATAAAAGTCTCCATTCTTT-T
322 AAAATCAAAGTTTGTACTTTAAATGA-GACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCT
* *
99264 CAACATTGGGAGCCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
386 -AAGATTGGGAACCAAAAACACATTCC-TTCATTAGGATACATGACATTGATGCTTTGGTGTCGC
* ** * * ** *
99329 AAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
449 AAGAGAAGCTCTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGACAAA-A
* *
99394 TGAATAGTCATACTAATCCGCTTTCTTTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATA-A
513 TGAATACTCATACTAATCC-CATTCTTTT-TAGATTAGGCACCATAAACATAGTCTTCTCATACA
* * * * * *
99457 GGATACATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTG-ATAAG
576 -GATACAGGATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCA-CAATTTTTGTA-AAT
* * * * * * *
99521 CATAAGTTCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGT
638 TATAAGTTCGTCCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGAT
* * * *
99586 TAGGCATTTTAAACACATTCTCC-CTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGA
703 TAGGCACTATAAACACATTCTCCTC-AATAGGATAAATGATATTGATGGTTTTCTTTTGCATGGA
* * * *
99650 AATTTTTTTCTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAAT-AGGACATGCATTG
767 AA-TCTTTTC-TTGACTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGA-GACATGCATTG
* * * *
99714 ATT-TTCGTAAAAGTCTCCATTCTTTTCAA-CATTGGGAGCCAAAAACACATTCCCTTCATTAGG
829 ATTCTT-ATAAAAGTTTCCATTCTTTCCAAGC-TTGGGAACCAAAAACACATTCCCTTCATTAGG
* * * * **
99777 ATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTGTTC-TCCCCACCGTCA
892 ATACATGACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAAT-A
** * * * * *
99831 TTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACTAATCCGCTTTCT
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCT
* * *
99896 TTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTT
66 TTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
* ** ** * * *
99960 CG-TAAGAAACGCTTCCTTCCCACCAATTTTTGAAAAGCATAAGTTCATTCCTCAAATTAGACAA
131 CGCT-AGAAACGCTTTCTTCCCACCAATTTTTTTAATTC-TAAGTTCGTCCCTCAAATGAGACAA
** * * * *
100024 ACAACGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCATTATAAACACATTCTCCCCAA
194 ACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCAT
** * * * * * *
100089 TAGGATAAATGATATTGACAGTTTTCTTTTGCCTGGAAATTTTTTCTTCGTCTTATTTTTCTTAA
259 TAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAA
* * * *
100154 AATCAAAGTTTGTGCTTTAAATAAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTT-TCAA
324 AATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCT-AA
* * * * *
100218 CATTGGGAGCCAAAAACACATTCCCTTCCTTAGGATACATGACATTGATGCTTTGGCGTCACAAG
388 GATTGGGAACCAAAAACACATT-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* ** * * * * *
100283 AGAAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGA
452 AGAAGCTCTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGACAAA-ATGA
* * * *
100348 ATAGTCATACTAATCCGCTTTCTTTTCTGGATTAGGCGCCATAAAC--AGTCTTCTCATA-AGGA
516 ATACTCATACTAATCC-CATTCTTTT-TAGATTAGGCACCATAAACATAGTCTTCTCATACA-GA
* * * ** * ** * * * * *
100410 TGC-GTGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCGCCAATTTTTGAAAAGTAT
578 TACAG-GATATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCC-ACAATTTTTGTAAATTAT
* * * * *
100474 -AGTTCATTCCTCAAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTCGTTG-GTA
641 AAGTTCGTCCCTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCG-TGATTA
* * * *
100537 GACACTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAAT
705 GGCACTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAAT
* *
100602 CTTTTCTTTGTCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCT
770 CTTTTC-TTGACTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCT
** *** * *
100667 CGTAAAACCCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATG
834 TATAAAAGTTTCCATTCTTTCCAAGCTTGGGAACCAAAAACACATTCCCTTCATTAGGATACATG
* * * * ** * ** *
100732 ACATTAATACTTCGATGTTGCAAGAGAAGCTTTTCTTTCTAACGTTG
899 ACATTGATGCTTTGGTGTCACAAGAGAAGCTTTTCTTTCCAACAATA
* * *
100779 TTGATAAAATCAAAGTTTATCTCTTAAATAAGGTAAACTTGAATACTCATACTAATCCATATTCT
1 TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCT
*** * * *
100844 TTTTTGGATTAACCACCGTAAACATAGTCTTTTCATAAGGATACATGATATTGATGCTTTGGTTT
66 TTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
* * *
100909 CGCAAGAAACACTTTCTTCCCACCAATTTTTGTAAATTCTAAGTTCGTGCCCT-AAATGAGACAA
131 CGCTAGAAACGCTTTCTTCCCACCAATTTTT-TTAATTCTAAGTTCGT-CCCTCAAATGAGACAA
* * *
100973 ACATGGATTCTAGTAGGGGTCTTCATTCATTTCGTGATTAGGCACTACAAACACATTCTCCTCAT
194 ACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCAT
* * * *
101038 TAGGATAAATGATATTGATGTTTTTCTTTTGCATTAAATTCTTTT-TCTTGCCTTA-TTTCCATA
259 TAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCT-TTGCCTTATTTTCCTTA
* ** * * * * *
101101 AAATCGAAGTTTGTACTTTAAATGAGACTTGCATTAATTCTCGTAAAAGACTCCATTCCTTCCAA
323 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAA
101166 GATTGGGAACCAAAA
388 GATTGGGAACCAAAA
101181 GCTGTTCTCC
Statistics
Matches: 4808, Mismatches: 950, Indels: 729
0.74 0.15 0.11
Matches are distributed among these distances:
892 1 0.00
893 97 0.02
894 3 0.00
896 1 0.00
897 3 0.00
898 1 0.00
899 1 0.00
903 2 0.00
905 231 0.05
906 3 0.00
907 16 0.00
909 5 0.00
910 2 0.00
911 7 0.00
912 1 0.00
913 1 0.00
918 2 0.00
919 3 0.00
920 3 0.00
921 1 0.00
925 1 0.00
926 2 0.00
927 2 0.00
928 3 0.00
932 1 0.00
933 1 0.00
934 1 0.00
936 1 0.00
937 1 0.00
939 6 0.00
940 84 0.02
941 20 0.00
942 92 0.02
943 10 0.00
944 3 0.00
945 17 0.00
946 7 0.00
947 7 0.00
948 622 0.13
949 1307 0.27
950 571 0.12
951 802 0.17
952 36 0.01
953 14 0.00
954 23 0.00
955 23 0.00
956 2 0.00
959 11 0.00
960 15 0.00
961 11 0.00
962 3 0.00
963 5 0.00
964 5 0.00
965 10 0.00
966 6 0.00
967 5 0.00
968 9 0.00
969 8 0.00
970 7 0.00
971 26 0.01
972 33 0.01
973 18 0.00
974 17 0.00
975 13 0.00
976 11 0.00
977 14 0.00
978 32 0.01
979 21 0.00
980 19 0.00
981 91 0.02
982 95 0.02
983 8 0.00
985 1 0.00
987 3 0.00
988 7 0.00
989 10 0.00
990 15 0.00
991 2 0.00
992 9 0.00
993 18 0.00
994 17 0.00
995 15 0.00
996 5 0.00
997 8 0.00
998 10 0.00
999 5 0.00
1000 12 0.00
1001 12 0.00
1002 5 0.00
1003 11 0.00
1004 8 0.00
1005 5 0.00
1006 7 0.00
1007 6 0.00
1009 8 0.00
1010 1 0.00
1011 1 0.00
1012 1 0.00
1014 1 0.00
1015 2 0.00
1019 2 0.00
1020 3 0.00
1023 1 0.00
1024 21 0.00
1025 18 0.00
1026 8 0.00
1027 2 0.00
1028 3 0.00
1029 5 0.00
1030 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (945 bp):
TTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCT
TTTCAAGATTAGCCACCATAAACATAGTCTTCTCATAAGGATACATGATATTGATGCTTTGGTTT
CGCTAGAAACGCTTTCTTCCCACCAATTTTTTTAATTCTAAGTTCGTCCCTCAAATGAGACAAAC
ATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTA
GGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTAAAA
TCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCATAAAAGTCTCCATTCTTTCTAAGAT
TGGGAACCAAAAACACATTCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAA
GCTCTTCTTTCCAACGTTATTGATAAAATTAAAGTTTGTCTCTTAAATAAGACAAAATGAATACT
CATACTAATCCCATTCTTTTTAGATTAGGCACCATAAACATAGTCTTCTCATACAGATACAGGAT
ATTGATGATTTGGTTTCGCAAGAAACGCTTTTTTCCCACAATTTTTGTAAATTATAAGTTCGTCC
CTCAAATTAGACAAACATGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAA
CACATTCTCCTCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTGAC
TTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACATGCATTGATTCTTATAAAAGTTTC
CATTCTTTCCAAGCTTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TGGTGTCACAAGAGAAGCTTTTCTTTCCAACAATA
Found at i:99892 original size:476 final size:475
Alignment explanation
Indices: 98383--101180 Score: 4175
Period size: 475 Copynumber: 5.9 Consensus size: 475
98373 TGGGAACCAA
* ** *
98383 AAGCTGTTCTCCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* *
98448 AGTCATACTAATCCACTTTATTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
66 AGTCATACTAATCCGCTTTCTTTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * *
98513 ATGTTGTCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTTATAAGCATAAGT
130 ATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGT
* *
98578 TCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCAT
195 TCATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCAT
* *
98643 TATAAACACATTCTCCCTAAAAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTT
260 TATAAACACATTCTCCCTAATAGGATAAATGATATTGATGGTTTTCTTTTGCCTGGAAATTTTTT
* *
98708 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCATAA
325 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTCTCGTAA
98773 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
390 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
*
98838 GATGCTTTGGTGTCGCAAAAG
455 GATGCTTTGGTGTCGCAAGAG
* *
98859 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
98924 AGTCATACTAATCCGCTTTGTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
*
98989 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
131 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
* *
99054 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCATT
*
99119 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
261 ATAAACACATTCTCCCTAATAGGATAAATGATATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
* * *
99184 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTCTCGTAAA
*
99249 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCTTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
99314 ATGCTTTGGTGTCGCAAGAG
456 ATGCTTTGGTGTCGCAAGAG
*
99334 AAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
99399 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
99464 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
131 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
* *
99529 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCATT
* *
99594 TTAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTT
261 ATAAACACATTCTCCCTAATAGGATAAATGATATTGATGGTTTTCTTTTGCCTGGAAA-TTTTTT
*
99659 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCGTAA
325 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTCTCGTAA
99724 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
390 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
99789 GATGCTTTGGTGTCGCAAGAG
455 GATGCTTTGGTGTCGCAAGAG
*
99810 AAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
99875 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* *
99940 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTCCTTCCCACCAATTTTTGAAAAGCATAAGTT
131 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
*
100005 CATTCCTCAAATTAGACAAACAACGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCATT
* **
100070 ATAAACACATTCTCCCCAATAGGATAAATGATATTGACAGTTTTCTTTTGCCTGGAAATTTTTTC
261 ATAAACACATTCTCCCTAATAGGATAAATGATATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
* ** *
100135 TTCGTCTTATTTTTCTTAAAATCAAAGTTTGTGCTTTAAATAAGACATGCATTGATTCTCGTAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTCTCGTAAA
*
100200 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCCTTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* *
100265 ATGCTTTGGCGTCACAAGAG
456 ATGCTTTGGTGTCGCAAGAG
** *
100285 AAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * *
100350 AGTCATACTAATCCGCTTTCTTTTCTGGATTAGGCGCCATAAAC--AGTCTTCTCATAAGGATGC
66 AGTCATACTAATCCGCTTTCTTTTCT-AATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* ** * * * * * *
100413 GTGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCGCCAATTTTTGAAAAGTAT-AGT
130 ATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGT
* * * *
100477 TCATTCCTCAAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTCGTTGG-TAGACA
195 TCATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCATTTCG-TGGTTAGGCA
* * * *
100541 CTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTT
259 TTATAAACACATTCTCCCTAATAGGATAAATGATATTGATGGTTTTCTTTTGCCTGGAAATTTTT
* * *
100606 TCTTTGTCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAAT-GAGACAAGCATTGATTCTCGT
324 TCTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAG-GACATGCATTGATTCTCGT
** * * * *
100670 AAAACCCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATGACA
388 AAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * *
100735 TTAATACTTCGATGTTGCAAGAG
453 TTGATGCTTTGGTGTCGCAAGAG
* ** * * ** * * ** *
100758 AAGCTTTTCTTTCTAACGTTGTTGATAAAATCAAAGTTTATCTCTTAAATAAGGTAAACTTGAAT
1 AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * ** * *
100823 ACTCATACTAATCC-ATATTCTTTTTTGGATTAACCACCGTAAACATAGTCTTTTCATAAGGATA
66 AGTCATACTAATCCGCT-TTCTTTTCT-AATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
* * * *
100887 CATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTG-TAAATTC-TA
129 CATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGAT-AA-GCATA
* * * * * * *
100950 AGTTCGTGCC-CTAAATGAGACAAACATGGATTCTAGTAGGGGTCTTCATTCATTTCGTGATTAG
192 AGTTCATTCCTC-AAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAG
* * * * * *
101014 GCACTACAAACACATTCT-CCTCATTAGGATAAATGATATTGATGTTTTTCTTTTGCAT-TAAAT
256 GCATTATAAACACATTCTCCCT-AATAGGATAAATGATATTGATGGTTTTCTTTTGCCTGGAAAT
* * * * * * *
101077 TCTTTT-TCTTGCCTTA-TTTCCATAAAATCGAAGTTTGTACTTTAAAT-GAGACTTGCATTAAT
320 T-TTTTCT-TTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAG-GACATGCATTGAT
* * * * *
101139 TCTCGTAAAAGACTCCATTCCTTCCAAGATTGGGAACCAAAA
382 TCTCGTAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAA
101181 GCTGTTCTCC
Statistics
Matches: 2166, Mismatches: 141, Indels: 31
0.93 0.06 0.01
Matches are distributed among these distances:
472 1 0.00
473 339 0.16
474 73 0.03
475 1078 0.50
476 675 0.31
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (475 bp):
AAGCTGTTCTCCCCACCGTCATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
CATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCATT
ATAAACACATTCTCCCTAATAGGATAAATGATATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
TTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTCTCGTAAA
AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
ATGCTTTGGTGTCGCAAGAG
Found at i:100222 original size:951 final size:948
Alignment explanation
Indices: 98383--101180 Score: 4239
Period size: 951 Copynumber: 2.9 Consensus size: 948
98373 TGGGAACCAA
* * *
98383 AAGCTGTTCTCCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* *
98448 AGTCATACTAATCCACTTTATTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
66 AGTCATACTAATCCGCTTTCTTTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * *
98513 ATGTTGTCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTTATAAGCATAAGT
130 ATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGT
98578 TCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCAT
195 TCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCAT
*
98643 TATAAACACATTCTCCCTAAAAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTT
260 TATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTT
*
98708 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCATAA
325 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCGTAA
98773 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
390 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
* *
98838 GATGCTTTGGTGTCGCAAAAGAAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTC
455 GATGCTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTC
*
98903 TTAAATAAGACAAACATGAATAGTCATACTAATCCGCTTTGTTTTCTAATTAGGCACCATAAACA
520 TTAAATAAGACAAACATGAATAGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACA
*
98968 TAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACC
585 TAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACC
* *
99033 AATTTTTGATAAGCATAAGTTCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCA
650 AATTTTTGAAAAGCATAAGTTCATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCA
* * * *
99098 TTCTTTTCGTGGTTAGGCATTATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTT
715 TTCATTTCGTGGTTAGGCATTATAAACACATTCTCCCCAATAGGATAAATGATATTGA-AGTTTT
** *
99163 CTTTTGCCTGGAAATTTTTTCTTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGG
779 CTTTTGCCTGGAAATTTTTTC-TTGTCTTATTTTTCTTAAAATCAAAGTTTGTACTTTAAATAAG
* * *
99228 ACATGCATTGATTTTCATAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCTT
843 ACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCT
* *
99293 TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAG
908 TCATTAGGATACATGACATTGATGCTTTGGCGTCACAAGAG
* *
99334 AAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
99399 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
99464 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
131 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
99529 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATT
*
99594 TTAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTT
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAA-TTTTTT
99659 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCGTAA
325 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCGTAA
99724 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
390 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
99789 GATGCTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTC
455 GATGCTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTC
99854 TTAAATAAGACAAACATGAATAGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACA
520 TTAAATAAGACAAACATGAATAGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACA
*
99919 TAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTCCTTCCCACC
585 TAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACC
*
99984 AATTTTTGAAAAGCATAAGTTCATTCCTCAAATTAGACAAACAACGATTCTAGTAAGGATCTTCA
650 AATTTTTGAAAAGCATAAGTTCATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCA
100049 TTCATTTCGTGGTTAGGCATTATAAACACATTCTCCCCAATAGGATAAATGATATTGACAGTTTT
715 TTCATTTCGTGGTTAGGCATTATAAACACATTCTCCCCAATAGGATAAATGATATTGA-AGTTTT
*
100114 CTTTTGCCTGGAAATTTTTTCTTCGTCTTATTTTTCTTAAAATCAAAGTTTGTGCTTTAAATAAG
779 CTTTTGCCTGGAAATTTTTTCTT-GTCTTATTTTTCTTAAAATCAAAGTTTGTACTTTAAATAAG
100179 ACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCT
843 ACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCT
*
100244 TCCTTAGGATACATGACATTGATGCTTTGGCGTCACAAGAG
908 TCATTAGGATACATGACATTGATGCTTTGGCGTCACAAGAG
* *
100285 AAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * *
100350 AGTCATACTAATCCGCTTTCTTTTCTGGATTAGGCGCCATAAAC--AGTCTTCTCATAAGGATGC
66 AGTCATACTAATCCGCTTTCTTTTCT-AATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* ** * * * * * *
100413 GTGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCGCCAATTTTTGAAAAGTAT-AGT
130 ATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGT
* * * * * *
100477 TCATTCCTCAAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTCGTTGG-TAGACA
195 TCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCG-TGGTTAGGCA
* * * * *
100541 CTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTT
259 TTATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTT
* * * *
100606 TCTTTGTCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAAT-GAGACAAGCATTGATTCTCGT
324 TCTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAG-GACATGCATTGATTTTCGT
** * * * *
100670 AAAACCCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATGACA
388 AAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * * * ** * * ** ** *
100735 TTAATACTTCGATGTTGCAAGAGAAGCTTTTCTTTCTAACGTTGTTGATAAAATCAAAGTTTATC
453 TTGATGCTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTC
** * * * * * ** *
100800 TCTTAAATAAGGTAAACTTGAATACTCATACTAATCC-ATATTCTTTTTTGGATTAACCACCGTA
518 TCTTAAATAAGACAAACATGAATAGTCATACTAATCCGCT-TTCTTTTCT-AATTAGGCACCATA
* * * *
100864 AACATAGTCTTTTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCC
581 AACATAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCC
** * * * * * *
100929 CACCAATTTTTGTAAATTC-TAAGTTCGTGCC-CTAAATGAGACAAACATGGATTCTAGTAGGGG
646 CACCAATTTTTG-AAAAGCATAAGTTCATTCCTC-AAATTAGACAAACAAGGATTCTAGTAAGGA
* * * * * *
100992 TCTTCATTCATTTCGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGATATTGAT
709 TCTTCATTCATTTCGTGGTTAGGCATTATAAACACATTCTCCCCAATAGGATAAATGATATTGAA
* * * * * *
101057 GTTTTTCTTTTGCAT-TAAATTCTTTTTCTTGCCTTA-TTTCCATAAAATCGAAGTTTGTACTTT
774 G-TTTTCTTTTGCCTGGAAA-T-TTTTTCTTGTCTTATTTTTCTTAAAATCAAAGTTTGTACTTT
* * * * * * * *
101120 AAATGAGACTTGCATTAATTCTCGTAAAAGACTCCATTCCTTCCAAGATTGGGAACCAAAA
836 AAATAAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAA
101181 GCTGTTCTCC
Statistics
Matches: 1701, Mismatches: 134, Indels: 27
0.91 0.07 0.01
Matches are distributed among these distances:
947 2 0.00
948 293 0.17
949 306 0.18
950 308 0.18
951 777 0.46
952 15 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (948 bp):
AAGCTGTTCTCCCCACCGTTATTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATT
ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
TTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCGTAAA
AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
ATGCTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCT
TAAATAAGACAAACATGAATAGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACAT
AGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCA
ATTTTTGAAAAGCATAAGTTCATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCAT
TCATTTCGTGGTTAGGCATTATAAACACATTCTCCCCAATAGGATAAATGATATTGAAGTTTTCT
TTTGCCTGGAAATTTTTTCTTGTCTTATTTTTCTTAAAATCAAAGTTTGTACTTTAAATAAGACA
TGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCA
TTAGGATACATGACATTGATGCTTTGGCGTCACAAGAG
Found at i:102018 original size:899 final size:894
Alignment explanation
Indices: 100285--102079 Score: 2539
Period size: 899 Copynumber: 2.0 Consensus size: 894
100275 GTCACAAGAG
*
100285 AAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * *
100350 AGTCATACTAATCCGCTTTCTTTTCTGGATTAGGCGCCATAAACAGTCTTCTCATAAGGATGCGT
66 AGTCATACTAATCCACTTTCTTTTCTAGATTAGGCACCATAAACAGTCTTCTCATAAGGATACAT
* *
100415 GATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCGCCAATTTTTGAAAAGTATAGTTCA
131 GATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCACCAATTTTTGAAAAGCATAGTTCA
*
100480 TTCCTCAAATGAGACAAACATGAATTCTAGTAAGGATCTTCATTCATTTCGTTGGTAGACACTAT
196 TTCCTCAAATGAGACAAACAAGAATTCTAGTAAGGATCTTCATTCATTTCGTTGGTAGACACTAT
100545 AAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTTTCTT
261 AAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTTTCTT
*
100610 TGTCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCGTAAAAC
326 TGTCTTATTTTCCTTAAAATCAAAGTTTGCACTTTAAATGAGACAAGCATTGATTCTCGTAAAAC
*
100675 CCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATGACATTAAT
391 CCTCCATTCTTTCCAACATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATGACATTAAT
* * ** * **
100740 ACTTCGATGTTGCAAGAGAAGCTTTTCTTTCTAACGTTGTTGATAAAATCAAAGTTTATCTCTTA
456 ACTTCGATGTCGCAAGAGAAGCTGTTCTCCCCAACGTCATTGATAAAATCAAAGTTTATCTCTTA
* * * *
100805 AATAAGGTAAACTTGAATACTCATACTAATCCATATTCTTTTTTGGATTAACCACCGTAAACATA
521 AATAAGATAAACATGAATACTCATACTAATCCATATTCTTTTCTGGATTAACCACCATAAACATA
* *
100870 GTCTTTTCATAAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAA
586 GTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAA
** * ** * **
100935 TTTTTGTAAATTCTAAGTTCGTGCCCTAAATGAGACAAACATGGATTCTAGTAGGGGTCTTCATT
651 TTTTTGTAAAAGCTAAGTTCATGCCCTAAATGAGACAAACAACGATTCTAGTAAGAATCTTCATT
* * *
101000 CATTTCGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATAAATGATATTGATGTTTTTCT
716 CATTTCGTGATTAGGCACTACAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCT
* * *
101065 TTTGCATTAAATTCTTTTTCTTGCCTTATTTCCATAAAATCGAAGTTTGTACTTTAAATGAGACT
781 TTTGCATTAAATTCTTTTTCTTGCCTTATTTCCATAAAATCAAAGTTTGTACTTTAAATAAGACA
101130 TGCATTAATTCTCGTAAAAGACTCCATTCCTTCCAAGATTGGGAACCAA
846 TGCATTAATTCTCGTAAAAGACTCCATTCCTTCCAAGATTGGGAACCAA
* *
101179 AAGCTGTTCTCCCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
*
101244 AGTCATACTAATCCACTTTCTTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAT
66 AGTCATACTAATCCACTTTCTTTTCTAGATTAGGCACCATAAAC--AGTCTTCTCATAAGGATAC
* * ** * * *
101309 ATGTTGTCGATGCTTTGGTTTCATAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGT
129 ATGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCACCAATTTTTGAAAAGCAT-AGT
* * * *
101374 TCATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCTTTTCG-TGGTTAGGCA
193 TCATTCCTCAAATGAGACAAACAAGAATTCTAGTAAGGATCTTCATTCATTTCGTTGG-TAGACA
* * * * * *
101438 TTATAAACACATTCTCCCCAATAGGATAATTGATATTGATAGTTTTTTTTTTTGCCTGGATAT-T
257 CTATAAACACATTCTCCCCAATAGGATAAATGATATTGAT-G-GTTTTCTTTTACCTGGAAATCT
* * *
101502 TTTGCTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAAT-AGGACATGCATTGATTTT
320 TTT-CTTTGTCTTATTTTCCTTAAAATCAAAGTTTGCACTTTAAATGA-GACAAGCATTGATTCT
* ** * * *
101566 CGTAACAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATG
383 CGTAAAACCCTCCATTCTTTCCAACATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATG
* * * * * **
101631 ACATTGATGCTTTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTT
448 ACATTAATACTTCGATGTCGCAAGAGAAGCTGTTCTCCCCAACGTCATTGATAAAATCAAAGTTT
* * * **
101696 GTCTCTTAAATAAGATAAACATGAATAGTCATACTAATCCGCT-TTCTTTTCT-GATTAGGCACC
513 ATCTCTTAAATAAGATAAACATGAATACTCATACTAATCC-ATATTCTTTTCTGGATTAACCACC
* *
101759 ATAAACATAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCT
577 ATAAACATAGTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGCAAGAAACACTTTCT
* *
101824 TCCCACCAATTTTTG-AAAAGCATAAGTTCAT-TCCTCAAATTAGACAAACAACGATTCTAGTAA
642 TCCCACCAATTTTTGTAAAAGC-TAAGTTCATGCCCT-AAATGAGACAAACAACGATTCTAGTAA
* * * *
101887 GAATCTTCATTCATTTCGTGGTTAGGCATTATAAACGCATTCTCCCCAATAGGATAAATGATATT
705 GAATCTTCATTCATTTCGTGATTAGGCACTACAAACACATTCTCCCCAATAGGATAAATGATATT
* * *
101952 GATGGTTTTCTTTTGC-TTGGAAA-T-TTTTTCTTTGTCTTATTTTTCTTAAAATCAAAGTTTGT
770 GATGGTTTTCTTTTGCATT--AAATTCTTTTTC-TTGCCTTA-TTTCCATAAAATCAAAGTTTGT
* * * *
102014 ACTTTAAATAAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAACCAA
831 ACTTTAAATAAGACATGCATTAATTCTCGTAAAAGACTCCATTCCTTCCAAGATTGGGAACCAA
102078 AA
1 AA
102080 ACACATTCCT
Statistics
Matches: 792, Mismatches: 94, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
894 103 0.13
896 71 0.09
897 111 0.14
898 201 0.25
899 305 0.39
900 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (894 bp):
AAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
AGTCATACTAATCCACTTTCTTTTCTAGATTAGGCACCATAAACAGTCTTCTCATAAGGATACAT
GATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCACCAATTTTTGAAAAGCATAGTTCA
TTCCTCAAATGAGACAAACAAGAATTCTAGTAAGGATCTTCATTCATTTCGTTGGTAGACACTAT
AAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTTTCTT
TGTCTTATTTTCCTTAAAATCAAAGTTTGCACTTTAAATGAGACAAGCATTGATTCTCGTAAAAC
CCTCCATTCTTTCCAACATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATGACATTAAT
ACTTCGATGTCGCAAGAGAAGCTGTTCTCCCCAACGTCATTGATAAAATCAAAGTTTATCTCTTA
AATAAGATAAACATGAATACTCATACTAATCCATATTCTTTTCTGGATTAACCACCATAAACATA
GTCTTCTCATAAGGATACATGATATCGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAA
TTTTTGTAAAAGCTAAGTTCATGCCCTAAATGAGACAAACAACGATTCTAGTAAGAATCTTCATT
CATTTCGTGATTAGGCACTACAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCT
TTTGCATTAAATTCTTTTTCTTGCCTTATTTCCATAAAATCAAAGTTTGTACTTTAAATAAGACA
TGCATTAATTCTCGTAAAAGACTCCATTCCTTCCAAGATTGGGAACCAA
Found at i:102260 original size:205 final size:205
Alignment explanation
Indices: 101944--102315 Score: 611
Period size: 205 Copynumber: 1.8 Consensus size: 205
101934 AATAGGATAA
* * * * * *
101944 ATGATATTGATGGTTTTCTTTTGCTTGGAAATTTTTTCTTTGTCTTATTTTTCTTAAAATCAAAG
1 ATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAG
* *
102009 TTTGTACTTTAAATAAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAA
66 TTTGTACTTTAAATAAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGGAA
*
102074 CCAAAAACACATTC-CTTTCATTAGGATATATGACATTAATTAGGCATTATAAACACATTCTTCT
131 CCAAAAACACATTCTC-TTCATTAGGATACATGACATTAATTAGGCATTATAAACACATTCTTCT
102138 CCTCAGCAAGC
195 CCTCAGCAAGC
* *
102149 ATGATATTGATGGTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTCATTTTCCTTCAAATCAAAG
1 ATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAG
* *
102214 TTTGTACTTTAAATGAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGTAA
66 TTTGTACTTTAAATAAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGGAA
102279 CCAAAAACACATTCTCTTCATTAGGATACATGACATT
131 CCAAAAACACATTCTCTTCATTAGGATACATGACATT
102316 CATGCTTCAG
Statistics
Matches: 153, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
205 152 0.99
206 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (205 bp):
ATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCATTTTCCTTAAAATCAAAG
TTTGTACTTTAAATAAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGGAA
CCAAAAACACATTCTCTTCATTAGGATACATGACATTAATTAGGCATTATAAACACATTCTTCTC
CTCAGCAAGC
Found at i:102789 original size:680 final size:682
Alignment explanation
Indices: 101468--102790 Score: 1824
Period size: 680 Copynumber: 1.9 Consensus size: 682
101458 ATAGGATAAT
* * * * * * *
101468 TGATATTGATAGTTTTTTTTTTTGCCTGGATATTTTTGCTTTGTCTTATTTTTCTTAAAATCAAA
1 TGATATTGATAGTGTTTTTTTTTGCATGAAAATTTTTGCTTTGCCTCATTTTCCTTAAAATCAAA
* * * *
101533 GTTTGCACTTTAAATAGGACATGCATTGATTTTCGTAACAGTCTCCATTCTTTTCAACATTGGGA
66 GTTTGCACTTTAAATAGGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAACATTGGGA
* * **
101598 GCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAGAAGCTG
131 ACCAAAAACACATTCCCTTCATTAGGATACATGACATTCATGCTTCAGTGTCGCAAGAGAAGCTG
* ** * *
101663 TTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATAGTCAT
196 TTCTCCCCAACGTCATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
* * **
101728 ACTAATCCGCTTTCTTTTCTGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
261 ACTAATCCACTTTCTTTTCGGATTAACCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
* * * * **
101793 CGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGAAAAGCATAAGTTCATTCC
326 CGATCCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTAGAAAAGCATAAGTTCACGCC
* * * *
101858 TCAAATTAGACAAACAACGATTCTAGTAAGAATCTTCATTCATTTCGTGGTTAGGCATTATAAAC
391 TCAAATGAGACAAACAACGATTCTAGTAAGAATCATCATTCATTTCGTGATTAGGCACTATAAAC
* * * *
101923 GCATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCTTGGAAATTTTTTCTTTGTC
456 ACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGTC
* * * *
101988 TTATTTTTCTTAAAATCAAAGTTTGTACTTTAAATAAGACATGCATTGATTCTCGTAAAAGTCTC
521 TTATTTTCCATAAAATCAAAGTTTGTACTTTAAATAAGACAAGCATTGATTCGCGTAAAAGTCTC
* * *
102053 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATATATGACATTAATTAGG
586 CATTCTTTTCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATTAGG
102118 CATTATAAACACATTCTTCTCCTCAGCAAGCA
651 CATTATAAACACATTCTTCTCCTCAGCAAGCA
*
102150 TGATATTGAT-G-GTTTTTTTTTGCATGAAAATCTTTT-CTTTGCCTCATTTTCCTTCAAATCAA
1 TGATATTGATAGTGTTTTTTTTTGCATGAAAAT-TTTTGCTTTGCCTCATTTTCCTTAAAATCAA
* *
102212 AGTTTGTACTTTAAAT-GAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGG
65 AGTTTGCACTTTAAATAG-GACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAACATTGG
* *
102276 TAACCAAAAACACATTCTCTTCATTAGGATACATGACATTCATGCTTCAGTGTCGCAAGAGAAGC
129 GAACCAAAAACACATTCCCTTCATTAGGATACATGACATTCATGCTTCAGTGTCGCAAGAGAAGC
* ** * *
102341 T-TT-TCCTTCTAACGTTGTTGATAAAATCAAAGTTTGTCTCTTAAATAAGGCAAACTTGAATAC
194 TGTTCTCC--CCAACGTCATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* * *
102404 TCATACTAATCCACATTT-TTTTCAGGGTTAACCACCATAAACATAGTCTTTTTATAAGGATACA
257 TCATACTAATCCAC-TTTCTTTTC-GGATTAACCACCATAAACATAGTCTTCTCATAAGGATACA
* * **
102468 TGGTATTGATCCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTAGTAAATTC-TAAGT
320 TGATATCGATCCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTAG-AAAAGCATAAGT
* ** * ** *
102532 TCGCGCCTCAAATGAGACAAACATGGATTCTAGTAGGGGTCATCATTCATTTTGTGATTAGGCAC
384 TCACGCCTCAAATGAGACAAACAACGATTCTAGTAAGAATCATCATTCATTTCGTGATTAGGCAC
* * *
102597 TATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTTCATGAAAATCTTTT
449 TATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTT
102662 CTTTG-CATTA-TTTCCATAAAATCAAAGTTTGTACTTTAAATGAA-ACAAGCATTGATTCGCGT
514 CTTTGTC-TTATTTTCCATAAAATCAAAGTTTGTACTTTAAAT-AAGACAAGCATTGATTCGCGT
102724 AAAAGTCTCCATT-TTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGAC
577 AAAAGTCTCCATTCTTTT-CAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGAC
102788 ATT
641 ATT
102791 GATGCTTTGG
Statistics
Matches: 559, Mismatches: 72, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
678 3 0.01
679 7 0.01
680 322 0.58
681 213 0.38
682 14 0.03
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (682 bp):
TGATATTGATAGTGTTTTTTTTTGCATGAAAATTTTTGCTTTGCCTCATTTTCCTTAAAATCAAA
GTTTGCACTTTAAATAGGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAACATTGGGA
ACCAAAAACACATTCCCTTCATTAGGATACATGACATTCATGCTTCAGTGTCGCAAGAGAAGCTG
TTCTCCCCAACGTCATTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCAT
ACTAATCCACTTTCTTTTCGGATTAACCACCATAAACATAGTCTTCTCATAAGGATACATGATAT
CGATCCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTAGAAAAGCATAAGTTCACGCC
TCAAATGAGACAAACAACGATTCTAGTAAGAATCATCATTCATTTCGTGATTAGGCACTATAAAC
ACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTGCATGAAAATCTTTTCTTTGTC
TTATTTTCCATAAAATCAAAGTTTGTACTTTAAATAAGACAAGCATTGATTCGCGTAAAAGTCTC
CATTCTTTTCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATTAGG
CATTATAAACACATTCTTCTCCTCAGCAAGCA
Found at i:102848 original size:158 final size:157
Alignment explanation
Indices: 102205--102860 Score: 394
Period size: 158 Copynumber: 4.1 Consensus size: 157
102195 ATTTTCCTTC
* * *
102205 AAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAA
1 AAATCAAAGTTTGT-CTTTAAATGAAACAAACATTGATTCTCGTAAAAGTCTCCATTTTTTCCAA
* * * **
102270 GATTGGTAACCAAAAACACATTCTCTTCATTAGGATACATGACATTCATGCTTCAGTGTCGCAAG
65 GATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
* * *
102335 AGAAGCTTTTCCTTCTAACGTTGTTGATA
130 AGAAGCTTTTCTTTCTTACATT-TTGATA
* * * *
102364 AAATCAAAGTTTGTCTCTTAAAT-AAGGCAAAC-TTGAATACTCATACTAA-TC-CACATTTTTT
1 AAATCAAAGTTTGTCT-TTAAATGAA-ACAAACATTG-ATTCTCGTA-AAAGTCTC-CATTTTTT
* * * * * * ** * * ** * *
102425 TCAGGGTT--AACCACCATAAACATAGTCTTTTTATAAGGATACATGGTATTGATCCTTTGGTTT
61 CCAAGATTGGAA--ACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* **
102488 CGCAAGA-AA-CACTTTC-TTCCCACCAATTTT-AGTA
124 CGCAAGAGAAGC-TTTTCTTTCTTA-C-ATTTTGA-TA
* * * * * * * * * ***
102522 AATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAGGGGTCAT-CATTCATTTT-
1 AAATCAAAGTTTG-TCTTTAAATGAAACAAACATTGATTCTCGTAAAAGTC-TCCATT--TTTTC
** * * * * * * ** * *
102585 -GTGATTAGG-CACTATAAACACATTCTCC-TCATTAGGATAAATGATATTGATGGTTTTCTTTT
62 CAAGATT-GGAAACCAAAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* * * * **
102647 TCATGAAAATCTTTTCTTTGCATT--ATTTCCATA
125 GCAAGAGAAGCTTTTCTTT-C-TTACATTTTGATA
* *
102680 AAATCAAAGTTTGTACTTTAAATGAAACAAGCATTGATTCGCGTAAAAGTCTCCATTTTTTCCAA
1 AAATCAAAGTTTGT-CTTTAAATGAAACAAACATTGATTCTCGTAAAAGTCTCCATTTTTTCCAA
102745 GATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
65 GATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
102810 AGAAGCTTTTCTTTCTTACATTGTTGATA
130 AGAAGCTTTTCTTTCTTACATT-TTGATA
102839 AAATC-AAGTTTGTCTCTTAAAT
1 AAATCAAAGTTTGTCT-TTAAAT
102861 AAGGCAAACT
Statistics
Matches: 359, Mismatches: 99, Indels: 79
0.67 0.18 0.15
Matches are distributed among these distances:
156 6 0.02
157 15 0.04
158 216 0.60
159 112 0.31
160 9 0.03
161 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (157 bp):
AAATCAAAGTTTGTCTTTAAATGAAACAAACATTGATTCTCGTAAAAGTCTCCATTTTTTCCAAG
ATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
GAAGCTTTTCTTTCTTACATTTTGATA
Found at i:103201 original size:474 final size:475
Alignment explanation
Indices: 102115--103267 Score: 1698
Period size: 474 Copynumber: 2.4 Consensus size: 475
102105 GACATTAATT
* * * *
102115 AGGCATTATAAACACATTCTTCTCCTCAGCAAGCATGATATTGATGGTTTTTTTTTGCATGAAAA
1 AGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGAAAA
*
102180 TCTTTTCTTTGCCTCATTTTCCTTCAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTC
66 TCTTTTCTTTGCCTCA-TTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTC
* *
102245 TCGTAAAAGTCTCCATTCTTTCCAAGATTGGTAACCAAAAACACATTCTCTTCATTAGGATACAT
130 TCGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACAT
* *
102310 GACATTCATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACGTTGTTGATAAAATCAAAGTT
195 GACATTGATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACATTGTTGATAAAATCAAAGTT
* * *
102375 TGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTTTTTTCAGGGTTAACCACC
260 TGTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCTTTTCAAGATTAACCACC
* * * * ** *
102440 ATAAACATAGTCTTTTTATAAGGATACATGGTATTGATCCTTTGGTTTCGCAAGAAACACTTTCT
325 ATAAACATAGTCTTCTGATAAGGATACAAGATATTGATCAATTGGTTTCACAAGAAACACTTTCT
*
102505 TCCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAGGG
390 TCCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAAGG
* *
102570 GTCATCATTCATTTTGTGATT
455 ATCATCATTCATTTTGTGATG
* * * ** *
102591 AGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGGTTTTCTTTTTCATGAAAA
1 AGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGAAAA
* * * * *
102656 TCTTTTCTTTGCATTATTTCCATAAAATCAAAGTTTGTACTTTAAATGAAACAAGCATTGATTCG
66 TCTTTTCTTTGCCTCATTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCT
*
102721 CGTAAAAGTCTCCATTTTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATG
131 CGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATG
** * *
102786 ACATTGATGCTTTGGTGTCGCAAGAGAAGCTTTTCTTTCTTACATTGTTGATAAAATC-AAGTTT
196 ACATTGATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACATTGTTGATAAAATCAAAGTTT
* * *
102850 GTCTCTTAAATAAGGCAAACTTGAGTACTCATACTAATCCCCATTCTTTTCAAGATTAGCCACCA
261 GTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCTTTTCAAGATTAACCACCA
* * * * * * *
102915 TAAACATAGTCTTCTGATACGGATACAAGATTTTGATGAATTGGTTTCACTAGGAATACTTTTTT
326 TAAACATAGTCTTCTGATAAGGATACAAGATATTGATCAATTGGTTTCACAAGAAACACTTTCTT
* * * * * *
102980 CCCA-TAATTTTTGTAGATTCTATGTTCGTGCCTCAAATGAGATAAACATGGATTCTAGTAAGGA
391 CCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
103044 TCATCATTCATTTTGTGATG
456 TCATCATTCATTTTGTGATG
*
103064 AGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGGAAA
1 AGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGAAAA
* *
103129 TCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGAGATGCATTGATTC
66 TCTTTTCTTTGCCTCA-TTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTC
* * * * * *
103194 TCGTAAAAGTCTCCATTCTTTCTAACATTGGGAACCAATAACACATTCCCTTTATTAGGATACAA
130 TCGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACAT
*
103259 GACGTTGAT
195 GACATTGAT
103268 AGAATCAAAG
Statistics
Matches: 600, Mismatches: 76, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
473 143 0.24
474 229 0.38
475 159 0.26
476 69 0.12
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AGGCACTATAAACACATTCTTCTCCTCAGGATGCATGATATTGATGGTTTTCTTTTGCATGAAAA
TCTTTTCTTTGCCTCATTTCCTTAAAATCAAAGTTTGTACTTTAAATGAGACAAGCATTGATTCT
CGTAAAAGTCTCCATTCTTTCCAAGATTGGAAACCAAAAACACATTCCCTTCATTAGGATACATG
ACATTGATGCTTCAGTGTCGCAAGAGAAGCTTTTCCTTCTAACATTGTTGATAAAATCAAAGTTT
GTCTCTTAAATAAGGCAAACTTGAATACTCATACTAATCCACATTCTTTTCAAGATTAACCACCA
TAAACATAGTCTTCTGATAAGGATACAAGATATTGATCAATTGGTTTCACAAGAAACACTTTCTT
CCCACCAATTTTAGTAAATTCTAAGTTCGCGCCTCAAATGAGACAAACATGGATTCTAGTAAGGA
TCATCATTCATTTTGTGATG
Found at i:103658 original size:432 final size:430
Alignment explanation
Indices: 102832--103699 Score: 1127
Period size: 432 Copynumber: 2.0 Consensus size: 430
102822 TTCTTACATT
* * * * * *
102832 GTTGATAAAATCAAGTTTGTCTCTTAAATAAGGCAAACTTGAGTACTCATACTAATCCCCATTCT
1 GTTGATAAAATCAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTCT
* * * * *
102897 TTTCAAGATTAGCCACCATAAACATAGTCTTCTGATACGGATACAAGATTTTGATGAATTGGTTT
66 TTTCAAGATTAGCCACCATAAACAAAGTCTTCTAATAAGGATACAAGATATTGATGAATTCGTTT
* * * ** * *
102962 CACTAGGAATACTTTTTTCCCATAATTTTTGTAGATTCTATGTTCGTGCCTCAAATGAGATAAAC
131 CACAAGAAACACTTTCATCCCATAATTTTTGTAGATTCAATGTTCGTGCCCCAAATGAGATAAAC
* ** *
103027 ATGGATTCTAGTAAGGATCATCATTCATTTTGTGATGAGGCACTATAAACACATTCTTCTCCTCA
196 AAGGATTCTAGTAAGGATCATCATTCATTTCATGATGAGGCACTATAAACACATTCTCCTCCTCA
** * * *
103092 GGATGCATGATATTGATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCCTTAAAA
261 GGATAAACGATATTAATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCCTAAAAA
* * **
103157 TCAAAGTTTGTACTTTAAATGAGAGATGCATTGATTCTCGTAAAAGTCTCCATTCTTTCTAACAT
326 TCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCACAAAAGTCTCCATTCTTTCTAACAT
*
103222 TGGGAACCAATAACACATTCCCTTT-ATTAGGATACAAGAC
391 TGGGAACCAAAAACACATT-CCTTTCATTAGGATACAAGAC
*
103262 GTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTC
1 GTTGATAAAATC-AAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTC
** * * * * * **
103327 TTTTCTGGATTAGGCACCGTAAACAAATTCTTCTAATAAGGATATATGATATTGATGCTTTCGTT
65 TTTTCAAGATTAGCCACCATAAACAAAGTCTTCTAATAAGGATACAAGATATTGATGAATTCGTT
*
103392 TCGCAAGAAACACTTTCATCCCACTAATTTTTTGTTA-ATTCAAAT-TTCGTGCCCCAAATGAGA
130 TCACAAGAAACACTTTCATCCCA-TAA-TTTTTG-TAGATTC-AATGTTCGTGCCCCAAATGAGA
* * * *
103455 TAAGCAAGGATTCTAGTAAGGATCTTTATTCATTTCATGATTAGGCACTATAAACACATTCTCCT
191 TAAACAAGGATTCTAGTAAGGATCATCATTCATTTCATGATGAGGCACTATAAACACATTCTCCT
* * * *
103520 CATTC-GGATAAACGATATTAATGGTTTT-TTTTGCGTGGAAATCTTTTCTTTGCCTTATTTTCC
256 C-CTCAGGATAAACGATATTAATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCC
*
103583 TAAAAATCAAAGTTTGTACTTTAAAAGAGACATGCGTTGATTCTCACAAAAGTCTCCATTCTTT-
320 TAAAAATCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCACAAAAGTCTCCATTCTTTC
* *
103647 TCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGAC
385 T-AACATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGAC
*
103694 ATTGAT
1 GTTGAT
103700 GCTTTGGTGT
Statistics
Matches: 375, Mismatches: 55, Indels: 14
0.84 0.12 0.03
Matches are distributed among these distances:
430 11 0.03
431 120 0.32
432 134 0.36
433 104 0.28
434 6 0.02
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (430 bp):
GTTGATAAAATCAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTCT
TTTCAAGATTAGCCACCATAAACAAAGTCTTCTAATAAGGATACAAGATATTGATGAATTCGTTT
CACAAGAAACACTTTCATCCCATAATTTTTGTAGATTCAATGTTCGTGCCCCAAATGAGATAAAC
AAGGATTCTAGTAAGGATCATCATTCATTTCATGATGAGGCACTATAAACACATTCTCCTCCTCA
GGATAAACGATATTAATGGTTTTCTTTTGCATGGAAATCTTTTCTTTGCCTCACTTTCCTAAAAA
TCAAAGTTTGTACTTTAAAAGAGACATGCATTGATTCTCACAAAAGTCTCCATTCTTTCTAACAT
TGGGAACCAAAAACACATTCCTTTCATTAGGATACAAGAC
Found at i:104172 original size:474 final size:469
Alignment explanation
Indices: 103262--104618 Score: 1594
Period size: 474 Copynumber: 2.8 Consensus size: 469
103252 GATACAAGAC
* * * *
103262 GTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACTAATCCACATTC
1 GTTGATAGAATCAAAG-TTGTCTCTTAAATAAGACAAACGTGAATACTCATACTAATCCCCATTC
** * * * * * *
103327 TTTTCTGGATTAGGCACCGTAAACAAATTCTTCTAATAAGGATATATGATATTGATGCTTTCGTT
65 TTTTAAGGATTAGGCACCATAAACATAGTCTT-TTATAAGGATACATGATATTGATGCTTTGGTT
* * * * * *
103392 TCGCAAGAAACACTTTCATCCCACTAATTTTTTGTTAATTCAAATTTCGTGCCCCAAATGAGATA
129 TCACAAGAAACGCTTTCTTCCCACTAA-TTTTTGTAAATT---ATTTC-TG-CTCAAATGAGACA
* * *
103457 AGCAAGGATTCTAGTAAGGATCTTTATTCATTTCATGATTAGGCACTATAAACACATTCTCCTCA
188 AACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
* * * * *
103522 TTCGGATAAACGATATTAATG-GTTTTTTTTGCGTGGAAATCTTTTCTTTGCCTTATTTTCCTAA
253 TTAGGATAAATGATATTAATGTGTTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTTCCTTA
* * * **
103586 AAATCAAAGTTTGTACTTTAAAAGAGACATGCGTTGATTCTCACAAAAGTCTCCATTCTTTTCAA
318 AAATCAAAGTTTGTCCTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAA
* * * *
103651 GATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAG
383 GATTGGGAACCAAAAACACATACCCTTCATTAGGATACATGACATTGAGGCTTTGGGGTCGCAAG
* *
103716 AGAAGCTTTTCTTTCCACCGTT
448 AGAAGCTTTTCTTCCCAACGTT
103738 GTTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTAATCCCCATTCT
1 GTTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTAATCCCCATTCT
*
103803 TTTAAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACATGATCTTGATGCTTTGGTTT
66 TTTAAGGATTAGGCACCATAAACATAGTCTTTT-ATAAGGATACATGATATTGATGCTTTGGTTT
* * * *
103868 CACAGGATACGCTTTCTTCTCACCAATTTTTGTAAAGTATGAGTTTACTGCTCAAATGAGACAAA
130 CACAAGAAACGCTTTCTTCCCACTAATTTTTGTAAA-T-T-A-TTT-CTGCTCAAATGAGACAAA
* * * * *
103933 CATGGATTCTTGTAGGGATCTTCATTCATTTTGTGA-TAGGCACTATAAACACATTCTCCTCTTT
190 CAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATT
* * * * *
103997 AGGATAAATGATATTTATGTGTTTCTTTTGCCTGGAAATCTTTTCTTTGTCATATTTTCCTTAAA
255 AGGATAAATGATATTAATGTGTTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTTCCTTAAA
* *
104062 ATCAAAGTTTGTCCTTTAAATGAGACATGCATTGATTCTTGTAAAAGTCTCCATTCTTTTCAACA
320 ATCAAAGTTTGTCCTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGA
* * * *
104127 TTGGGAACCAAAAACAGATACCCTTCATTGGGATACGTTACATTGAGGCTTTGGGGTCGCAAGAG
385 TTGGGAACCAAAAACACATACCCTTCATTAGGATACATGACATTGAGGCTTTGGGGTCGCAAGAG
*
104192 ACGCTTTTCTTCCCAACGTT
450 AAGCTTTTCTTCCCAACGTT
* * * * * * * *
104212 ATCGATAAAATCAAAATTTGCCTCCTAAATAAGACAAA-GCTGAAAACTCATACTAAT-CCCAAT
1 GTTGATAGAATC-AAAGTTGTCTCTTAAATAAGACAAACG-TGAATACTCATACTAATCCCCATT
* * * ** **
104275 CTTTTTAGGATTAGGCACCATTAACATAGTCTTCTTATACGGATACGGGATATTGATGAATTGGT
64 CTTTTAAGGATTAGGCACCATAAACATAGTCTT-TTATAAGGATACATGATATTGATGCTTTGGT
* * *
104340 TTCACAAGAAAAGCTTTTTTCCCA-TAATTTTTGTAAATTCTATCTTCCTACCTCAAATGAGACA
128 TTCACAAGAAACGCTTTCTTCCCACTAATTTTTGTAAA-T-TAT-TT-CT-GCTCAAATGAGACA
* * * * *
104404 AACACGAATTCTAGTAAGGATCTTCATTCACTTCGTGATTAGGCATTATAAACACATACTCCTCA
188 AACAAGGATTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCA
* * * * *
104469 TTAGGATAAATGATATTGATGGTTTTTTTTTTTTTTGCATGGAAATCTATTCTTTGACTTGTTTC
253 TTAGGATAAATGATATTAAT-G----TGTTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTT
* *
104534 CCTTAAAATCAAAGTTT-ACACTTTAAATGAGACATGCATTGATTGC-CGTAAAAGACTCCATTC
313 CCTTAAAATCAAAGTTTGTC-CTTTAAATGAGACATGCATTGATT-CTCGTAAAAGTCTCCATTC
*
104597 CTTTCAAGATTGGGAACCAAAA
376 TTTTCAAGATTGGGAACCAAAA
104619 GCTGTTCTCC
Statistics
Matches: 755, Mismatches: 107, Indels: 35
0.84 0.12 0.04
Matches are distributed among these distances:
471 1 0.00
472 5 0.01
473 102 0.14
474 355 0.47
475 165 0.22
476 18 0.02
478 1 0.00
479 107 0.14
480 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (469 bp):
GTTGATAGAATCAAAGTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTAATCCCCATTCT
TTTAAGGATTAGGCACCATAAACATAGTCTTTTATAAGGATACATGATATTGATGCTTTGGTTTC
ACAAGAAACGCTTTCTTCCCACTAATTTTTGTAAATTATTTCTGCTCAAATGAGACAAACAAGGA
TTCTAGTAAGGATCTTCATTCATTTCGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATA
AATGATATTAATGTGTTTTTTTTGCATGGAAATCTTTTCTTTGACTTATTTTCCTTAAAATCAAA
GTTTGTCCTTTAAATGAGACATGCATTGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGA
ACCAAAAACACATACCCTTCATTAGGATACATGACATTGAGGCTTTGGGGTCGCAAGAGAAGCTT
TTCTTCCCAACGTT
Found at i:105181 original size:159 final size:158
Alignment explanation
Indices: 105014--109002 Score: 1160
Period size: 159 Copynumber: 25.2 Consensus size: 158
105004 TAAAAGTCTC
* * * *
105014 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * *
105078 TTGGTGTCGCAAGAGAAGCTATTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
105143 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * *
105173 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATATCGATGCT
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * *
105236 TTGG-GTTCGTAAGA-AA-CGTTTTCTTCCCACCAATTTTTGA-T-AAGCATAAGTTCATTC-CT
65 TTGGTG-TCGCAAGAGAAGC-TTTTCTTCCCACC-ATCTTTGATTGAATCA-AAGTT--TTCTCT
* * * * * ** *** **
105295 CAAATTAGACAAACAAGGATTCTGGTAAGGATCTT
124 TAAATAAGACAAACATGAATTGTCATACTAATCCG
* ** * * * * *
105330 CATTCTTTTCGTGC-TTAGGCATTATAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** * ** ** ** ** * * *
105393 TTTTTTTTTGCCTGAAAATTTTTTCTTTGTC-TTAT-TTTTCTTAAAATCAAAGTTTACACTTTA
64 TTTGGTGTCGCAAGAGAAGCTTTTC-TTCCCACCATCTTTGATT-GAATCAAAGTTTTCTC-TTA
* ** * *
105456 AATAGGACATGCATTG-ATTTTCATA-AAAGTCTC-
126 AATAAGACAAACA-TGAATTGTCATACTAA-TC-CG
* * * *
105489 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
105553 TTGGTGTCGCAAAAGAAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
105618 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * *
105648 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATATCGATGCT
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * * * *
105711 TTGG-GTTCGTAAGA-AACGC-TTTCTTCCCACCAATTTTTCA-T-AAGCTTAAGTTCATTC-CT
65 TTGGTG-TCGCAAGAGAA-GCTTTTCTTCCCACC-ATCTTTGATTGAATC-AAAGTT--TTCTCT
* * * * * ** *** **
105770 CAAATTAGACAAACAAGGATTCTGGTAAGGATCTT
124 TAAATAAGACAAACATGAATTGTCATACTAATCCG
* ** * * * * *
105805 CATTCTTTTCGTGC-TTAGGCATTATAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** ** ** ** ** * * *
105868 TTTTCTTTTGCCTG-GAAATTTTTGCTTTGTC-TTAT-TTTTCTTAAAATCAAAGTTTACACTTT
64 TTTGGTGTCGCAAGAGAAGCTTTT-C-TTCCCACCATCTTTGATT-GAATCAAAGTTTTCTC-TT
* ** * *
105930 AAATAGGACATGCATTG-ATTTTCATA-AAAGTCTC-
125 AAATAAGACAAACA-TGAATTGTCATACTAA-TC-CG
* * * *
105964 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
106028 TTGGTGTCGCAAAAGAAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
106093 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * *
106123 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATATCGATGCT
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * * *
106186 TTGG-GTTCGTAAGA-AACGC-TTTCTTCCCACCAATTTTTGA-T-AAGCTTAAGTTCATTC-CT
65 TTGGTG-TCGCAAGAGAA-GCTTTTCTTCCCACC-ATCTTTGATTGAATC-AAAGTT--TTCTCT
* * * * * ** *** **
106245 CAAATTAGACAAACAAGGATTCTGGTAAGGATCTT
124 TAAATAAGACAAACATGAATTGTCATACTAATCCG
* ** * * * * *
106280 CATTCTTTTCGTGC-TTAGGCATTATAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** ** ** ** ** * * *
106343 TTTTCTTTTGCCTG-GAAATTTTTGCTTTGTC-TTAT-TTTTCTTAAAATCAAAGTTTACACTTT
64 TTTGGTGTCGCAAGAGAAGCTTTT-C-TTCCCACCATCTTTGATT-GAATCAAAGTTTTCTC-TT
* ** * *
106405 AAATAGGACATGCATTG-ATTTTCATA-AAAGTCTC-
125 AAATAAGACAAACA-TGAATTGTCATACTAA-TC-CG
* * * *
106439 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
106503 TTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
106568 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * *
106598 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATATCGATGCT
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * *
106661 TTGG-GTTCGTAAGA-AA-CGTTTTCTTCCCACCAATTTTTGA-T-AAGCATAAGTTCATTC-CT
65 TTGGTG-TCGCAAGAGAAGC-TTTTCTTCCCACC-ATCTTTGATTGAATCA-AAGTT--TTCTCT
* * * * * ** *** **
106720 CAAATTAGACAAACAAGGATTCTGGTAAGGATCTT
124 TAAATAAGACAAACATGAATTGTCATACTAATCCG
* ** * * * * *
106755 CATTCTTTTCGTGC-TTAGGCATTATAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** * ** ** ** ** * * *
106818 TTTTTTTTTGCCTGAAAATTTTTTCTTTGTC-TTAT-TTTTCTTAAAATCAAAGTTTACACTTTA
64 TTTGGTGTCGCAAGAGAAGCTTTTC-TTCCCACCATCTTTGATT-GAATCAAAGTTTTCTC-TTA
* ** * *
106881 AATAGGACATGCATTG-ATTTTCATA-AAAGTCTC-
126 AATAAGACAAACA-TGAATTGTCATACTAA-TC-CG
* * * *
106914 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
106978 TTGGTGTCGCAAAAGAAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
107043 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * *
107073 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATATCGATGCT
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * * *
107136 TTGG-GTTCGTAAGA-AACGC-TTTCTTCCCACCAATTTTTGA-T-AAGCTTAAGTTCATTC-CT
65 TTGGTG-TCGCAAGAGAA-GCTTTTCTTCCCACC-ATCTTTGATTGAATC-AAAGTT--TTCTCT
* * * * ** *** **
107195 CAAATAAGACAAACAAGGATTCTGGTAAGGATCTT
124 TAAATAAGACAAACATGAATTGTCATACTAATCCG
* ** * * * * *
107230 CATTCTTTTCGTGC-TTAGGCATTATAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** ** ** ** ** * * *
107293 TTTTCTTTTGCCTG-GAAATTTTTGCTTTGTC-TTAT-TTTTCTTAAAATCAAAGTTTACACTTT
64 TTTGGTGTCGCAAGAGAAGCTTTT-C-TTCCCACCATCTTTGATT-GAATCAAAGTTTTCTC-TT
* ** * *
107355 AAATAGGACATGCATTG-ATTTTCATA-AAAGTCTC-
125 AAATAAGACAAACA-TGAATTGTCATACTAA-TC-CG
* * * *
107389 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
107453 TTGGTGTCGCAAAAGAAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
107518 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * * *
107548 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATATCGATGCA
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * * *
107611 TTGG-GTTCGTAAGA-AACGC-TTTCTTCCCACCAATTTTTGA-T-AAGCTTAAGTTCATTC-CT
65 TTGGTG-TCGCAAGAGAA-GCTTTTCTTCCCACC-ATCTTTGATTGAATC-AAAGTT--TTCTCT
* * * * * ** *** **
107670 CAAATTAGACAAACAAGGATTCTGGTAAGGATCTT
124 TAAATAAGACAAACATGAATTGTCATACTAATCCG
* ** * * * * *
107705 CATTCTTTTCGTGC-TTAGGCATTATAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** ** ** ** ** * * *
107768 TTTTCTTTTGCCTG-GAAATTTTTGCTTTGTC-TTAT-TTTTCTTAAAATCAAAGTTTACACTTT
64 TTTGGTGTCGCAAGAGAAGCTTTT-C-TTCCCACCATCTTTGATT-GAATCAAAGTTTTCTC-TT
* ** * *
107830 AAATAGGACATGCATTG-ATTTTCATA-AAAGTCTC-
125 AAATAAGACAAACA-TGAATTGTCATACTAA-TC-CG
* * * *
107864 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
107928 TTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
107993 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * *
108023 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATATCGATGCT
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * * * * *
108086 TTGGTTTCGTAAGA-AACGC-TTTCTTCCCACCAATTTTTGA-T-AAGCCTAAGTTCATTC-CTC
65 TTGGTGTCGCAAGAGAA-GCTTTTCTTCCCACC-ATCTTTGATTGAA-TCAAAGTT--TTCTCTT
* * * * ** *** **
108146 AAATTAGACAAACAAGGATTCTGGTAAGGATCTT
125 AAATAAGACAAACATGAATTGTCATACTAATCCG
** *** * * * * *
108180 CATTCTTTTCGT-GGTTAGGCATTTTAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** ** ** ** * * *
108243 TTTTCTTTTGCCTG-GAAATG-TTTTCTTTGTC-TTAT-TTTTCTTAAAATCAAAGTTTGCACTT
64 TTTGGTGTCGCAAGAG-AA-GCTTTTC-TTCCCACCATCTTTGATT-GAATCAAAGTTTTCTC-T
* ** * * *
108304 TAAATAGGACATGCATTG-ATTTTCGTA-AAAGTCTC-
124 TAAATAAGACAAACA-TGAATTGTCATACTAA-TC-CG
* * * *
108339 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * *
108403 TTGGTGTCGCAAGAGAAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAAT
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTT-TCTCTTAAAT
*
108468 AAGACAAACATGAATAGTCATACTAATCCG
129 AAGACAAACATGAATTGTCATACTAATCCG
* * * * * * *
108498 CTTTCTTTTCTA-ATTAGGCACCATAAACATAGT-CTTCTCATAAGGATACATGATGTCGATGCT
1 CATTCTTTTCTACATTAGGCACCATAAACACATTCCCT-TCATTAGGATACATGATATTGATGCT
* * * * * *
108561 TTGGTTTCGTAAGA-AACGC-TTTCTTCCCACCAATTTTTGA--AAAGCATAAGTTCATTC-CTC
65 TTGGTGTCGCAAGAGAA-GCTTTTCTTCCCACC-ATCTTTGATTGAATCA-AAGTT--TTCTCTT
* * * *** **
108621 AAATTAGACAAACAACG-ATTCT-AGTAAGGATCTT
125 AAATAAGACAAAC-ATGAATTGTCA-TACTAATCCG
* ** ** * * * * *
108655 CATTCATTTCGT-GGTTAGGCATTATAAACACATTCTCC-CCAATAGGATAAATGATATTGACGG
1 CATTCTTTTC-TACATTAGGCACCATAAACACATTC-CCTTCATTAGGATACATGATATTGATGC
** * * ** ** * ** ** *
108718 TTTTCTTTTGCCTG-GAAATTTTTTCTTCGTC-TTAT-TTTTCTTAAAATCAAAGTTTGTACT-T
64 TTTGGTGTCGCAAGAG-AAGCTTTTCTTC-CCACCATCTTTGATT-GAATCAAAGTTT-T-CTCT
** * * * *
108779 TAAATAAGACATGCATTAATTCTCGTA-AAAGTCTC-
124 TAAATAAGACAAACATGAATTGTCATACTAA-TC-CG
* * * * *
108814 CATTCTTTTCAACATT-GGGAGCCAAAAACACATTCCCTTCCTTAGGATACATGACATTGATGCT
1 CATTCTTTTCTACATTAGGCA-CCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCT
* * * * * * *
108878 TTGGCGTCACAAGAGAAGCTGTTCTCCCCACCGT-TGTTGATAGAATCAAAGTTTGTCTCTTGAA
65 TTGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCT-TTGATTGAATCAAAGTTT-TCTCTTAAA
*
108942 TAAGACAAACATGAATAGTCATACTAATCCG
128 TAAGACAAACATGAATTGTCATACTAATCCG
* **
108973 CTTTCTTTTCTGGATTAGGCACCATAAACA
1 CATTCTTTTCTACATTAGGCACCATAAACA
109003 GTCTTCTCAT
Statistics
Matches: 2640, Mismatches: 913, Indels: 554
0.64 0.22 0.13
Matches are distributed among these distances:
156 29 0.01
157 469 0.18
158 923 0.35
159 1065 0.40
160 154 0.06
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
CATTCTTTTCTACATTAGGCACCATAAACACATTCCCTTCATTAGGATACATGATATTGATGCTT
TGGTGTCGCAAGAGAAGCTTTTCTTCCCACCATCTTTGATTGAATCAAAGTTTTCTCTTAAATAA
GACAAACATGAATTGTCATACTAATCCG
Found at i:105514 original size:475 final size:475
Alignment explanation
Indices: 104617--109788 Score: 8563
Period size: 475 Copynumber: 10.9 Consensus size: 475
104607 TGGGAACCAA
** * *
104617 AAGCTGTTCTCCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATGAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* *
104682 AGTCATACTAATCCACTTTATTTTCTAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
66 AGTCATACTAATCCGCTTTCTTTTCTA-ATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* * * * *
104747 ATGTTGTCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCATCAATTTTTTATAAGCATAAGT
130 ATGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGT
* *
104812 TCATTCCTCAAATTAGACAAACAAGGATTCTAGTAAGGATCTTCATTCTTTTCGTGGTTAGGCAT
195 TCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCAT
*
104877 TATAAACACATTCTCCCTAAAAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTT
260 TATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTT
*
104942 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCATAA
325 CTTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAA
105007 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
390 AAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATT
105072 GATGCTTTGGTGTCGCAAGAG
455 GATGCTTTGGTGTCGCAAGAG
*
105093 AAGCTATTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
105158 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
*
105223 TGATATCGATGCTTTGGGTTCGTAAGAAACGTTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
105288 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
* *
105353 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTTTTTTGCCTGAAAATTTTTTC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
105418 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
105483 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
*
105548 ATGCTTTGGTGTCGCAAAAG
456 ATGCTTTGGTGTCGCAAGAG
105568 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
105633 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* *
105698 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTCATAAGCTTAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
105763 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
*
105828 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTGC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
105893 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
105958 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
*
106023 ATGCTTTGGTGTCGCAAAAG
456 ATGCTTTGGTGTCGCAAGAG
106043 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
106108 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
*
106173 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCTTAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
106238 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
*
106303 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTGC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
106368 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
106433 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
106498 ATGCTTTGGTGTCGCAAGAG
456 ATGCTTTGGTGTCGCAAGAG
*
106518 AAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
106583 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
*
106648 TGATATCGATGCTTTGGGTTCGTAAGAAACGTTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
106713 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
* *
106778 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTTTTTTGCCTGAAAATTTTTTC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
106843 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
106908 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
*
106973 ATGCTTTGGTGTCGCAAAAG
456 ATGCTTTGGTGTCGCAAGAG
106993 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
107058 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
*
107123 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCTTAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
*
107188 CATTCCTCAAATAAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
*
107253 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTGC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
107318 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
107383 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
*
107448 ATGCTTTGGTGTCGCAAAAG
456 ATGCTTTGGTGTCGCAAGAG
107468 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
107533 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* *
107598 TGATATCGATGCATTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCTTAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
107663 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
*
107728 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTGC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
107793 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
107858 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
107923 ATGCTTTGGTGTCGCAAGAG
456 ATGCTTTGGTGTCGCAAGAG
*
107943 AAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
108008 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* *
108073 TGATATCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCCTAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
*
108138 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGGTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
* *
108203 TTAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATGTTTTC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
* *
108268 TTTGTCTTATTTTTCTTAAAATCAAAGTTTGCACTTTAAATAGGACATGCATTGATTTTCGTAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
108333 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
108398 ATGCTTTGGTGTCGCAAGAG
456 ATGCTTTGGTGTCGCAAGAG
*
108418 AAGCTGTTCTCCCCACCGTCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
108483 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
66 AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
* * *
108548 TGATGTCGATGCTTTGGTTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGAAAAGCATAAGTT
131 TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
* * * *
108613 CATTCCTCAAATTAGACAAACAACGATTCTAGTAAGGATCTTCATTCATTTCGTGGTTAGGCATT
196 CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
* * *
108678 ATAAACACATTCTCCCCAATAGGATAAATGATATTGACGGTTTTCTTTTGCCTGGAAATTTTTTC
261 ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
* ** * * * *
108743 TTCGTCTTATTTTTCTTAAAATCAAAGTTTGTACTTTAAATAAGACATGCATTAATTCTCGTAAA
326 TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
*
108808 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCCTTAGGATACATGACATTG
391 AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
* *
108873 ATGCTTTGGCGTCACAAGAG
456 ATGCTTTGGTGTCGCAAGAG
* ** * *
108893 AAGCTGTTCTCCCCACCGTTGTTGATAGAATCAAAGTTTGTCTCTTGAATAAGACAAACATGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* *
108958 AGTCATACTAATCCGCTTTCTTTTCTGGATTAGGCACCATAAAC--AGTCTTCTCATAAGGATGC
66 AGTCATACTAATCCGCTTTCTTTTCT-AATTAGGCACCATAAACATAGTCTTCTCATAAGGATAC
* ** * * * * * * *
109021 GTGATATCGATGCTTCAGCTTCATAAGAAACGCTTTCTACCCGCAAATTTTTGAAAAGTAT-AGT
130 ATGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGT
* * * * * * * * *
109085 TCATTCCTTAAATGAGACAACCATGAATTCTAGTAAGGATCTTCATTCATTTCGTTG-GTAGACA
195 TCATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCG-TGCTTAGGCA
* * * * *
109149 CTATAAACACATTCTCCCCAATAGGATAAATGATATTGATGGTTTTCTTTTACCTGGAAATCTTT
259 TTATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTT
* * ** * * *
109214 TCTTTGCCTTATTTTCCTTAAAATCAAAGTTTGTACTTTAAAT-GAGACAAGCATTGATTCTCGT
324 TCTTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAG-GACATGCATTGATTTTCAT
** * * * *
109278 AAAACCCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGACACATGACA
388 AAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACA
* * * * *
109343 TTAATACTTCGATGTTGCAAGAG
453 TTGATGCTTTGGTGTCGCAAGAG
* ** * * * ** ** * ** *
109366 AAGCTTTTCTTTCTAACGTTGTTGATAAAATCAAAGTTTATCTCTTAAATAAGGTAAACTTGAAT
1 AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
* * * * ** *
109431 ACTCATACTAATCC-ATATTCTTTTTTGGATTAACCACCATAAACATAGTCTTTTCATAAGGATA
66 AGTCATACTAATCCGCT-TTCTTTTCT-AATTAGGCACCATAAACATAGTCTTCTCATAAGGATA
* * * * *
109495 CATGATATTGATGCTTTGGTTTCGCAAGAAACACTTTCTTCCCACCAATTTTTG-TAAATTC-TA
129 CATGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGAT-AA-GCATA
* * * * * * * * *
109558 AGTTCGTGCC-CTAAATGAGACAAACATGGATTCTAGTAGGGGTCTTCATTCATTTCGTGATTAG
192 AGTTCATTCCTC-AAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAG
* * * * * * *
109622 GCACTACAAACACATTCT-CCTCATTAGGATAAATGATATTGATGTTTTTCTTTTGCAT-TAAAT
256 GCATTATAAACACATTCTCCCT-AATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAAT
* * * * ** * *
109685 TCTTTT-TCTTGCCTTA-TTTCCATAAAATCGAAGTTTGTACTTTAAAT-GAGACTTGCATTAAT
320 T-TTTTCT-TTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAG-GACATGCATTGAT
** * * * * * *
109747 TCCCGTAAAAGACTCCATTCCTTCCAAGATTGGGAACCAAAA
382 TTTCATAAAAGTCTCCATTCTTTTCAACATTGGGAGCCAAAA
109789 GCTGTTCTCC
Statistics
Matches: 4501, Mismatches: 181, Indels: 29
0.96 0.04 0.01
Matches are distributed among these distances:
472 1 0.00
473 339 0.08
474 71 0.02
475 3877 0.86
476 213 0.05
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
AAGCTGTTCTCCCCACCATCATTGATTGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
AGTCATACTAATCCGCTTTCTTTTCTAATTAGGCACCATAAACATAGTCTTCTCATAAGGATACA
TGATATCGATGCTTTGGGTTCGTAAGAAACGCTTTCTTCCCACCAATTTTTGATAAGCATAAGTT
CATTCCTCAAATTAGACAAACAAGGATTCTGGTAAGGATCTTCATTCTTTTCGTGCTTAGGCATT
ATAAACACATTCTCCCTAATAGGATAAATGTTATTGATGGTTTTCTTTTGCCTGGAAATTTTTTC
TTTGTCTTATTTTTCTTAAAATCAAAGTTTACACTTTAAATAGGACATGCATTGATTTTCATAAA
AGTCTCCATTCTTTTCAACATTGGGAGCCAAAAACACATTCCCTTCATTAGGATACATGACATTG
ATGCTTTGGTGTCGCAAGAG
Found at i:110868 original size:205 final size:205
Alignment explanation
Indices: 110552--110923 Score: 584
Period size: 205 Copynumber: 1.8 Consensus size: 205
110542 AATAGGATAA
* * * * * * *
110552 ATGATATTGACGGTTTTCTTTTGCTTGGAAATTTTTTCTTTGTCTTATTTTTCTTAAAATCAAAG
1 ATGATATTGACGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAG
* *
110617 TTTGTACTTTAAATAAGACATGCATTAATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAA
66 TTTGTACTTTAAATAAGACAAGCATTAATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGGAA
*
110682 CCAAAAACACATTC-CTTTCATTAGGATATATGACATTAATTAGGCATTATAAACACATTCTTCT
131 CCAAAAACACATTCTC-TTCATTAGGATACATGACATTAATTAGGCATTATAAACACATTCTTCT
110746 CCTAAGCAAGC
195 CCTAAGCAAGC
* * *
110757 ATGATATTGATGGTTTTTTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTCAAATCAAAG
1 ATGATATTGACGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAG
* * *
110822 TTTGTACTTTAAATGAGACAAGCATTGATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGTAA
66 TTTGTACTTTAAATAAGACAAGCATTAATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGGAA
110887 CCAAAAACACATTCTCTTCATTAGGATACATGACATT
131 CCAAAAACACATTCTCTTCATTAGGATACATGACATT
110924 CATGCTTCAG
Statistics
Matches: 150, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
205 149 0.99
206 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (205 bp):
ATGATATTGACGGTTTTCTTTTGCATGAAAATCTTTTCTTTGCCTCACTTTCCTTAAAATCAAAG
TTTGTACTTTAAATAAGACAAGCATTAATTCTCGTAAAAGTCTCCATTCTTTCCAAGATTGGGAA
CCAAAAACACATTCTCTTCATTAGGATACATGACATTAATTAGGCATTATAAACACATTCTTCTC
CTAAGCAAGC
Done.