genome.fa.s1556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1556
Parameters: 2 7 7 80 10 50 1000
Length:  28704

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1290--1472	28	6.5	28	82	3	197	31	28	15	24	1.96
1315--1472	84	1.8	86	86	4	230	31	29	14	24	1.94
1356--1509	28	5.2	32	77	16	113	31	29	16	22	1.96
2384--2642	20	11.8	20	70	18	133	31	14	14	40	1.86
2405--2458	12	5.2	12	68	32	52	35	11	18	35	1.86
2384--2642	40	6.9	39	68	16	154	31	14	14	40	1.86
2405--2601	71	2.8	72	90	0	306	30	13	14	40	1.85
6557--6606	21	2.4	22	83	9	61	32	20	0	48	1.50
8898--8951	19	2.8	19	85	2	72	29	12	18	38	1.88
17900--18105	78	2.6	78	83	2	243	29	16	29	24	1.97
18057--18130	28	2.6	28	83	10	89	24	18	32	24	1.97
18116--18448	104	3.2	102	78	6	375	32	12	24	30	1.92
18117--18445	52	6.4	51	79	5	320	33	12	24	30	1.91
20785--20847	33	1.9	33	86	0	90	44	17	12	25	1.84
20867--20934	19	3.9	19	78	21	94	39	14	11	33	1.83
20889--20913	13	1.9	13	100	0	50	32	16	16	36	1.90
20870--20932	32	2.0	32	100	0	126	38	15	12	33	1.86
20990--21046	21	2.7	21	97	0	105	36	19	10	33	1.86
21788--22542	55	13.4	55	85	5	947	25	20	27	27	1.99
21836--21923	26	3.3	26	65	20	63	20	19	32	27	1.97
21860--21948	29	3.2	29	65	26	82	21	19	31	28	1.97
21787--22542	171	4.5	171	92	2	1194	25	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21787--22543	341	2.2	336	91	4	1193	25	20	27	27	1.99
23520--23571	8	6.6	8	78	12	54	0	5	7	86	0.70
23520--23553	13	2.8	12	86	8	50	0	2	8	88	0.62
23518--23573	22	2.5	22	82	2	76	0	7	8	83	0.80

Tables:   1

The End!