Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1557

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4308
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.33


Found at i:1031 original size:13 final size:13

Alignment explanation


    Indices: 1013--1038  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1003 ATAATCACCC

                         
       1013 TGTATCGATACAA
          1 TGTATCGATACAA

                         
       1026 TGTATCGATACAA
          1 TGTATCGATACAA

       1039 AAAAATGTAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31


Consensus pattern (13 bp):   
TGTATCGATACAA

Found at i:3133 original size:15 final size:15

Alignment explanation


    Indices: 3113--3143  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3103 ATTTCGTTTG

                   *       
       3113 GAGCTTCTTCATTTT
          1 GAGCTTCCTCATTTT

                           
       3128 GAGCTTCCTCATTTT
          1 GAGCTTCCTCATTTT

             
       3143 G
          1 G

       3144 GACTTTTTAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48


Consensus pattern (15 bp):   
GAGCTTCCTCATTTT
Done.