genome.fa.s1558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1558
Parameters: 2 7 7 80 10 50 1000
Length:  24737

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1553--1577	13	1.9	13	100	0	50	36	16	16	32	1.90
1531--1597	33	2.0	33	82	5	82	32	16	14	35	1.90
1562--1619	20	3.0	20	75	12	66	34	17	15	32	1.91
5814--5864	20	2.5	20	83	0	66	41	17	9	31	1.82
7614--7638	13	1.9	13	100	0	50	32	16	16	36	1.90
13785--13831	23	2.0	25	87	8	71	85	2	12	0	0.70
14816--15301	34	14.9	34	82	9	475	20	33	12	33	1.90
15017--15070	27	2.0	27	88	0	81	24	40	12	22	1.89
14993--15293	61	4.8	61	83	9	351	20	34	13	31	1.91
14816--15285	138	3.6	133	81	10	394	20	33	12	32	1.91
14947--15303	95	3.8	94	76	11	315	19	33	13	33	1.91
15299--15499	33	6.2	33	90	5	311	27	34	17	20	1.95
15311--15494	98	1.9	99	95	3	336	28	34	18	19	1.95
15299--15506	65	3.2	65	88	7	316	27	34	17	20	1.95
15566--15633	21	3.2	20	66	25	50	27	26	16	29	1.97
15545--16002	43	10.1	43	79	11	504	25	24	18	31	1.97
15494--16055	92	6.1	92	93	1	937	25	24	17	31	1.97
15956--16093	52	2.6	55	83	5	176	25	24	15	34	1.94
16923--16987	33	2.0	33	87	0	94	33	13	15	36	1.87
20293--20317	13	1.9	13	100	0	50	40	16	8	36	1.77
20268--20333	33	2.0	33	85	11	91	34	18	13	33	1.90
20365--20422	19	3.0	20	80	7	75	34	15	15	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20406--20430	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1

The End!