Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold156
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2697547
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 1 of 14
Found at i:135 original size:19 final size:20
Alignment explanation
Indices: 97--135 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
87 GGAGAGAGAG
*
97 ACCGAAAACCCGAAACCCGA
1 ACCGAAAACCCGAAAACCGA
*
117 ACCG-AAACCCTAAAACCGA
1 ACCGAAAACCCGAAAACCGA
136 TAACTCCGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.46, C:0.38, G:0.13, T:0.03
Consensus pattern (20 bp):
ACCGAAAACCCGAAAACCGA
Found at i:363 original size:6 final size:7
Alignment explanation
Indices: 216--14199 Score: 7900
Period size: 7 Copynumber: 1892.9 Consensus size: 7
206 ACCGATAACT
216 CCCGAAA
1 CCCGAAA
223 CCCGAAA
1 CCCGAAA
230 CCCGAAA
1 CCCGAAA
237 CCCGAAA
1 CCCGAAA
244 TCCCGAAA
1 -CCCGAAA
*
252 ACCGAAA
1 CCCGAAA
*
259 CCCAAAA
1 CCCGAAA
266 CCCGAAA
1 CCCGAAA
273 CCCGGAAA
1 CCC-GAAA
281 CCCGAGAA
1 CCCGA-AA
289 TCCCGAAA
1 -CCCGAAA
*
297 CCAGAAA
1 CCCGAAA
*
304 -CC-TAA
1 CCCGAAA
309 CCCGAAA
1 CCCGAAA
*
316 CACGAAA
1 CCCGAAA
*
323 CTCGAAA
1 CCCGAAA
330 CCCGAAA
1 CCCGAAA
337 CCCGACGAAA
1 -CC--CGAAA
347 CCCGAAA
1 CCCGAAA
354 CCCG-AA
1 CCCGAAA
360 CCCGCAATA
1 CCCG-AA-A
369 CCCGGAAA
1 CCC-GAAA
377 CCCGAAA
1 CCCGAAA
* *
384 TCCGGCAA
1 -CCCGAAA
392 CCCGAAA
1 CCCGAAA
399 CCCCCGGAAA
1 --CCC-GAAA
409 CCCGAATA
1 CCCGAA-A
417 CCCGAAA
1 CCCGAAA
424 CCCGAAA
1 CCCGAAA
431 -CCGAAA
1 CCCGAAA
437 TCCC-AAA
1 -CCCGAAA
444 CTCCTG-AA
1 C-CC-GAAA
452 CCCTTGAAA
1 CCC--GAAA
461 CTCCG-AA
1 C-CCGAAA
* *
468 TCAGAAAA
1 CCCG-AAA
*
476 CCGAGGAAA
1 CC--CGAAA
*
485 GTCCTGAAA
1 --CCCGAAA
*
494 CCCGATTAT
1 CCCGA--AA
*
503 CCTGAAA
1 CCCGAAA
510 CCCGAACA
1 CCCGAA-A
518 CCCGAAA
1 CCCGAAA
*
525 CCTGAAA
1 CCCGAAA
532 -CCGAAA
1 CCCGAAA
538 CCCGGAAA
1 CCC-GAAA
546 CCCGGAATA
1 CCC-GAA-A
555 -CCGTAAA
1 CCCG-AAA
562 CCCGAAA
1 CCCGAAA
569 CCCG-AA
1 CCCGAAA
*
575 -CAGAAA
1 CCCGAAA
581 -CCGAAAA
1 CCCG-AAA
*
588 CTCGAAA
1 CCCGAAA
595 -CCG-AA
1 CCCGAAA
600 CCCGAAA
1 CCCGAAA
*
607 CCCTGAAC
1 CCC-GAAA
615 CCCG-AA
1 CCCGAAA
621 CCCGAAA
1 CCCGAAA
628 CCCGTAAA
1 CCCG-AAA
636 CTCCGAAA
1 C-CCGAAA
644 CCCG-AA
1 CCCGAAA
*
650 CCAGAAA
1 CCCGAAA
657 CCCGAAA
1 CCCGAAA
*
664 CCCTAAA
1 CCCGAAA
*
671 ACCGAAA
1 CCCGAAA
*
678 CCCGCAA
1 CCCGAAA
685 CCCGAAA
1 CCCGAAA
*
692 CCCGACA
1 CCCGAAA
*
699 CCGCGAAC
1 CC-CGAAA
707 CCCGGGAAA
1 CCC--GAAA
*
716 CCGGAAA
1 CCCGAAA
723 CCCGTAAA
1 CCCG-AAA
731 CCCGAAA
1 CCCGAAA
738 CCCG-AA
1 CCCGAAA
744 CCCGAAA
1 CCCGAAA
751 CCCGAAA
1 CCCGAAA
758 CCCGAAA
1 CCCGAAA
765 CCCGGAAA
1 CCC-GAAA
773 CCCGAAA
1 CCCGAAA
780 CCCGAAA
1 CCCGAAA
787 CCCGAAAA
1 CCCG-AAA
795 CCCGAAA
1 CCCGAAA
*
802 -CCG-CA
1 CCCGAAA
807 CCCGAAAA
1 CCCG-AAA
815 CCC-ATAA
1 CCCGA-AA
822 CCCGAAA
1 CCCGAAA
*
829 GCCCGAAGT
1 -CCCGAA-A
838 CCCG-AA
1 CCCGAAA
844 CCCG-AA
1 CCCGAAA
850 CTCCTGTAAAA
1 C-CC-G--AAA
861 CTCCGAAA
1 C-CCGAAA
869 CCCGAAA
1 CCCGAAA
876 -CCGAAA
1 CCCGAAA
*
882 CCGGGAAA
1 CC-CGAAA
890 CCCTCGAATA
1 -CC-CGAA-A
**
900 CTGGAAA
1 CCCGAAA
*
907 CCCCGACA
1 -CCCGAAA
*
915 CTCGAAA
1 CCCGAAA
922 GCCCGAAA
1 -CCCGAAA
*
930 CACGAAAA
1 CCCG-AAA
938 CCCGAAAA
1 CCCG-AAA
946 CCCGAAA
1 CCCGAAA
* *
953 CCGGAAC
1 CCCGAAA
960 CCCGAAA
1 CCCGAAA
967 CCCGGAAA
1 CCC-GAAA
975 CCCGAAA
1 CCCGAAA
982 CCCGAAA
1 CCCGAAA
989 CCCGAAA
1 CCCGAAA
996 CCTCGGAAA
1 CC-C-GAAA
*
1005 CCCGAAC
1 CCCGAAA
1012 CCCGAAA
1 CCCGAAA
*
1019 CCAGCAAA
1 CCCG-AAA
1027 CCCCCGAAA
1 --CCCGAAA
1036 -CCGAAA
1 CCCGAAA
1042 CTCCGAAA
1 C-CCGAAA
**
1050 CCCTCAA
1 CCCGAAA
1057 CCCGAATA
1 CCCGAA-A
1065 GCCCGAAA
1 -CCCGAAA
1073 -CCGAAA
1 CCCGAAA
1079 CCCGAAA
1 CCCGAAA
1086 CCCGAAA
1 CCCGAAA
1093 CCCTG-AA
1 CCC-GAAA
1100 -CCG-AA
1 CCCGAAA
1105 CCCGAAA
1 CCCGAAA
*
1112 CAC-AAA
1 CCCGAAA
1118 CTCCGATAAAAA
1 C-CCG----AAA
1130 CCCGAAA
1 CCCGAAA
*
1137 CCCGAAC
1 CCCGAAA
1144 CCCTG-AA
1 CCC-GAAA
1151 -CCGAAA
1 CCCGAAA
*
1157 CCCGTAA
1 CCCGAAA
1164 CCCG-AA
1 CCCGAAA
*
1170 CCCGACA
1 CCCGAAA
1177 CCCGACAA
1 CCCGA-AA
*
1185 ACCGAAA
1 CCCGAAA
1192 -CCGAAA
1 CCCGAAA
1198 CCCGGAAATCA
1 CCC-G-AA--A
1209 CCCGAAA
1 CCCGAAA
**
1216 CGAGAAA
1 CCCGAAA
1223 CCCGAAA
1 CCCGAAA
1230 CCCGAAA
1 CCCGAAA
*
1237 ACCGAAAA
1 CCCG-AAA
1245 CCC--AA
1 CCCGAAA
1250 CCCTGAAA
1 CCC-GAAA
1258 CCCG-AA
1 CCCGAAA
1264 CCCGAAA
1 CCCGAAA
* *
1271 CCCCCGCAC
1 --CCCGAAA
1280 CCCGAAA
1 CCCGAAA
1287 CCCGCAAA
1 CCCG-AAA
*
1295 CCCGCATA
1 CCCG-AAA
1303 CCCGAAA
1 CCCGAAA
1310 CCCGAAA
1 CCCGAAA
1317 CCCGAAA
1 CCCGAAA
1324 -CCGAAAA
1 CCCG-AAA
*
1331 CCCGCAA
1 CCCGAAA
1338 -CCGAAAA
1 CCCG-AAA
1345 CCCGAAAA
1 CCCG-AAA
*
1353 CCTGTAAAAA
1 CCCG---AAA
1363 CCCGAAA
1 CCCGAAA
1370 CCCG-AA
1 CCCGAAA
1376 CCCGCAAA
1 CCCG-AAA
*
1384 TCCGATCAA
1 CCCGA--AA
1393 CCCGGAAA
1 CCC-GAAA
*
1401 CCGGAAA
1 CCCGAAA
1408 CCCGAAA
1 CCCGAAA
*
1415 CTCGAAA
1 CCCGAAA
1422 -CCGAATA
1 CCCGAA-A
1429 CCCTGGAAA
1 CCC--GAAA
1438 CCCGAAA
1 CCCGAAA
*
1445 -CCGAGA
1 CCCGAAA
1451 -CCGAAAA
1 CCCG-AAA
*
1458 CCCGCAA
1 CCCGAAA
1465 CCCGAAA
1 CCCGAAA
1472 CCCGAAA
1 CCCGAAA
1479 -CCGAAA
1 CCCGAAA
1485 CCCGAAA
1 CCCGAAA
1492 CCCGGAAAA
1 CCC-G-AAA
1501 CCCGGAAAA
1 CCC-G-AAA
1510 CCCGCACGAA
1 CCCG-A--AA
1520 CCCGAAA
1 CCCGAAA
1527 CCCG-AA
1 CCCGAAA
1533 CCCGTAAA
1 CCCG-AAA
1541 CCCGAAA
1 CCCGAAA
1548 -CCGAAA
1 CCCGAAA
1554 CCCGGGAAAA
1 CCC--G-AAA
1564 CCCG-AA
1 CCCGAAA
1570 CCCGAAA
1 CCCGAAA
1577 CCCGAAA
1 CCCGAAA
1584 CCCGAAA
1 CCCGAAA
1591 CCCGAAA
1 CCCGAAA
1598 CCCGGAAA
1 CCC-GAAA
1606 CCCGAACCA
1 CCCGAA--A
1615 CCCGAACA
1 CCCGAA-A
1623 TCCCGAGATA
1 -CCCGA-A-A
1633 CCCGGAAA
1 CCC-GAAA
1641 -CCGAAA
1 CCCGAAA
*
1647 TTCCGAAA
1 -CCCGAAA
1655 CTCC-ACAA
1 C-CCGA-AA
1663 CCCAGAATAATAA
1 CCC-G----A-AA
1676 CCCG-AA
1 CCCGAAA
1682 CCCGAAA
1 CCCGAAA
1689 CCCGAATA
1 CCCGAA-A
1697 CCCGAAAA
1 CCCG-AAA
*
1705 CTC-AAA
1 CCCGAAA
1711 CCCGAAA
1 CCCGAAA
1718 CCCGAAA
1 CCCGAAA
1725 CCCGAAA
1 CCCGAAA
1732 CCCGAATA
1 CCCGAA-A
1740 CCCGATAA
1 CCCGA-AA
1748 CCCGAAA
1 CCCGAAA
1755 CCCGAAA
1 CCCGAAA
*
1762 -CCGATA
1 CCCGAAA
1768 CCCGAAA
1 CCCGAAA
*
1775 CCCGCAA
1 CCCGAAA
*
1782 CCCGAAT
1 CCCGAAA
1789 CCCGAAA
1 CCCGAAA
1796 CCCGAAAAA
1 CCCG--AAA
1805 CCCGGAAA
1 CCC-GAAA
1813 CCCGGAAA
1 CCC-GAAA
1821 CCTCGAAA
1 CC-CGAAA
1829 CCCCGAAA
1 -CCCGAAA
1837 CCCGTAAA
1 CCCG-AAA
1845 CCCGAAA
1 CCCGAAA
*
1852 CCCGCAA
1 CCCGAAA
*
1859 -CCGAGA
1 CCCGAAA
1865 CCCGAAA
1 CCCGAAA
1872 -CCG-AA
1 CCCGAAA
*
1877 CCGGGAAA
1 CC-CGAAA
1885 CCCGTAACA
1 CCCG-AA-A
1894 CCCGAAA
1 CCCGAAA
1901 CTTCCGATAA
1 C--CCGA-AA
1911 -CCGAAA
1 CCCGAAA
1917 CCCGTAAA
1 CCCG-AAA
1925 CCCGATAA
1 CCCGA-AA
1933 GCCCTGAAA
1 -CCC-GAAA
1942 CCCGAAA
1 CCCGAAA
1949 CCCGAAATA
1 CCCG-AA-A
*
1958 TCCCGGCAA
1 -CCC-GAAA
1967 CCCGAATATA
1 CCCG-A-A-A
*
1977 TGCCGCATAAA
1 --CC-C-GAAA
1988 CACCGCAAA
1 C-CCG-AAA
*
1997 TCCGAAAA
1 CCCG-AAA
2005 CCCGGGAAA
1 CCC--GAAA
2014 CCCGAAA
1 CCCGAAA
2021 CCCGTAAA
1 CCCG-AAA
2029 CCCGACAA
1 CCCGA-AA
2037 -CCGAAA
1 CCCGAAA
2043 CCCGAAA
1 CCCGAAA
2050 CCCGAAA
1 CCCGAAA
2057 CCCGAAA
1 CCCGAAA
2064 CCCGAAA
1 CCCGAAA
2071 CCCCGATAA
1 -CCCGA-AA
2080 CCCGCGAAAA
1 -CC-CG-AAA
2090 CCCGAAA
1 CCCGAAA
2097 CCCGAAAA
1 CCCG-AAA
2105 CCCGAAA
1 CCCGAAA
2112 CCCGAAA
1 CCCGAAA
2119 CCCGATAA
1 CCCGA-AA
*
2127 -CCGAAC
1 CCCGAAA
2133 CCCGAAA
1 CCCGAAA
*
2140 CCCGACA
1 CCCGAAA
*
2147 CCCTAAAAA
1 CCC--GAAA
2156 CCCGCAAA
1 CCCG-AAA
2164 -CCGAAA
1 CCCGAAA
2170 CCCGAAA
1 CCCGAAA
2177 CCCGAAA
1 CCCGAAA
2184 CCTCGAAA
1 CC-CGAAA
2192 CCCGAAA
1 CCCGAAA
2199 --CGATAA
1 CCCGA-AA
2205 CCCGAAA
1 CCCGAAA
2212 CCCTGAAA
1 CCC-GAAA
2220 CCCGAAATTA
1 CCCG-AA--A
2230 CCCGAAA
1 CCCGAAA
2237 CCCTCGATAAAA
1 -CC-CG---AAA
*
2249 CGCGAAA
1 CCCGAAA
2256 CCCCGAAA
1 -CCCGAAA
2264 CCCGAAA
1 CCCGAAA
2271 CCCGAAA
1 CCCGAAA
2278 CCCG-AA
1 CCCGAAA
2284 CCCGGAAA
1 CCC-GAAA
*
2292 ACCGAAAA
1 CCCG-AAA
2300 CACCG-AA
1 C-CCGAAA
2307 CTCCGAAA
1 C-CCGAAA
2315 CCCGAAA
1 CCCGAAA
2322 CCCGAAA
1 CCCGAAA
2329 CCCGAAA
1 CCCGAAA
2336 CCCGAAA
1 CCCGAAA
2343 CCCGAAA
1 CCCGAAA
2350 CCCG--A
1 CCCGAAA
*
2355 -CCGACA
1 CCCGAAA
*
2361 CCCGACA
1 CCCGAAA
2368 CCTCGGAAA
1 CC-C-GAAA
2377 -CCGAAA
1 CCCGAAA
2383 CCCGAAA
1 CCCGAAA
2390 CCCGAAA
1 CCCGAAA
*
2397 CCCTAAA
1 CCCGAAA
2404 CCTCGGAAA
1 CC-C-GAAA
2413 CCCGACTAA
1 CCCGA--AA
2422 CCCGAAA
1 CCCGAAA
2429 -CCG-AA
1 CCCGAAA
*
2434 CTTCCGAAC
1 C--CCGAAA
2443 CCCGAAA
1 CCCGAAA
2450 CCCTGAAA
1 CCC-GAAA
2458 CCCCG-AA
1 -CCCGAAA
2465 CCCGGAAA
1 CCC-GAAA
2473 CCCGAGAAA
1 CCC--GAAA
2482 CCCTGAAAAA
1 CCC-G--AAA
*
2492 CCCTAAA
1 CCCGAAA
2499 CCCCGATTAA
1 -CCCGA--AA
2509 CCCGAAA
1 CCCGAAA
2516 TCCTCGAAAAA
1 -CC-CG--AAA
2527 CCTC-AAA
1 CC-CGAAA
2534 CTCCG-AA
1 C-CCGAAA
2541 CCCGAAA
1 CCCGAAA
2548 CCCG--A
1 CCCGAAA
*
2553 CACGATAA
1 CCCGA-AA
2561 CCCGAAA
1 CCCGAAA
2568 CCCGAAAA
1 CCCG-AAA
*
2576 CCCGCAA
1 CCCGAAA
2583 CCCGAAA
1 CCCGAAA
2590 TCCCGGAAA
1 -CCC-GAAA
2599 CCCGAATAA
1 CCCG-A-AA
2608 TCCCGAAAA
1 -CCCG-AAA
*
2617 ACCGACAA
1 CCCGA-AA
2625 -CCGAAA
1 CCCGAAA
2631 CCCTGAAA
1 CCC-GAAA
*
2639 CCCGCAAC
1 CCCG-AAA
2647 CCCGCAGAA
1 CCCG-A-AA
*
2656 ACCGAAA
1 CCCGAAA
2663 CCGCGAAA
1 CC-CGAAA
**
2671 CCCTCAA
1 CCCGAAA
2678 CCCGAAA
1 CCCGAAA
2685 CCCGATAA
1 CCCGA-AA
2693 CTCCGAATA
1 C-CCGAA-A
2702 TCCCGAAA
1 -CCCGAAA
*
2710 CTCCGTAA
1 C-CCGAAA
*
2718 CCGGAAA
1 CCCGAAA
2725 CCCGAAA
1 CCCGAAA
2732 CCCGAAA
1 CCCGAAA
2739 CCCTG-AA
1 CCC-GAAA
*
2746 CCAGATTATA
1 CCCGA--A-A
2756 CCCCGAAA
1 -CCCGAAA
2764 CCCGAAA
1 CCCGAAA
2771 CCCG-AA
1 CCCGAAA
2777 CCCGAAAAA
1 CCCG--AAA
2786 CCCGGAAA
1 CCC-GAAA
2794 -CCGAAA
1 CCCGAAA
* *
2800 CACGAAC
1 CCCGAAA
2807 CCCGAAA
1 CCCGAAA
*
2814 CCCGCAA
1 CCCGAAA
2821 -CCGAAA
1 CCCGAAA
2827 CTCCGAAA
1 C-CCGAAA
2835 CCCG-AA
1 CCCGAAA
2841 CCCTGAAA
1 CCC-GAAA
2849 CCCG-AA
1 CCCGAAA
2855 CCCGAAA
1 CCCGAAA
2862 CCCGAAA
1 CCCGAAA
*
2869 --CGCAA
1 CCCGAAA
2874 CTCCGAAA
1 C-CCGAAA
2882 CCCGAAA
1 CCCGAAA
* *
2889 CACGCAA
1 CCCGAAA
*
2896 CTCGAAAAAA
1 CCCG---AAA
2906 CCTCGAAA
1 CC-CGAAA
2914 CCCGAAA
1 CCCGAAA
2921 -CCGTAAA
1 CCCG-AAA
*
2928 CCCGGAA
1 CCCGAAA
2935 CCCGAAA
1 CCCGAAA
2942 CCCGACAA
1 CCCGA-AA
2950 CCTCGAAAA
1 CC-CG-AAA
* **
2959 ACCGCTA
1 CCCGAAA
2966 CCCGAAA
1 CCCGAAA
2973 CCCGAATA
1 CCCGAA-A
2981 CTCCGAAA
1 C-CCGAAA
*
2989 CTCAGATAA
1 C-CCGA-AA
2998 CCCGTAAA
1 CCCG-AAA
3006 CCCGAAA
1 CCCGAAA
3013 CTCCGAAAA
1 C-CCG-AAA
3022 CCCG-AA
1 CCCGAAA
3028 CCCGTACAA
1 CCCG-A-AA
*
3037 --CGCAA
1 CCCGAAA
* *
3042 CCGGCAA
1 CCCGAAA
3049 CCCGAAA
1 CCCGAAA
3056 CCCGGAAGA
1 CCC-GAA-A
3065 CCCGAAAA
1 CCCG-AAA
3073 CCCGAAAA
1 CCCG-AAA
3081 CCCGAAAA
1 CCCG-AAA
*
3089 CCTGAAA
1 CCCGAAA
3096 CCCG---
1 CCCGAAA
*
3100 CCTGTAAA
1 CCCG-AAA
3108 CCCGAAA
1 CCCGAAA
*
3115 ACCGAAA
1 CCCGAAA
*
3122 ACCG-AA
1 CCCGAAA
3128 CCCGAAA
1 CCCGAAA
3135 -CCGAAA
1 CCCGAAA
3141 CCCGAATA
1 CCCGAA-A
3149 CCCGAAA
1 CCCGAAA
3156 CCCGAAA
1 CCCGAAA
*
3163 -CCGAAC
1 CCCGAAA
3169 CCCGATAA
1 CCCGA-AA
3177 CCCCGAAA
1 -CCCGAAA
3185 CCCGAAA
1 CCCGAAA
3192 CCCG-AA
1 CCCGAAA
3198 CCCGAAA
1 CCCGAAA
* *
3205 ACAGAAA
1 CCCGAAA
3212 CCCGAAA
1 CCCGAAA
3219 CCCGAAAA
1 CCCG-AAA
3227 CCCCTGAAA
1 -CCC-GAAA
3236 CCCGAAA
1 CCCGAAA
3243 CCCGTAAA
1 CCCG-AAA
3251 CCCGAAA
1 CCCGAAA
3258 -CCGAAA
1 CCCGAAA
3264 CCCTG-AA
1 CCC-GAAA
3271 CCCGAAAAA
1 CCCG--AAA
*
3280 CCGCGAAC
1 CC-CGAAA
3288 CCCGAAA
1 CCCGAAA
3295 CCTCCGAAA
1 -C-CCGAAA
3304 CCCGAAA
1 CCCGAAA
*
3311 -CCAAAA
1 CCCGAAA
3317 CCCGACAA
1 CCCGA-AA
3325 -CCGAAAA
1 CCCG-AAA
3332 CCCTGAAA
1 CCC-GAAA
*
3340 -CCGCAA
1 CCCGAAA
3346 CCCGGAAA
1 CCC-GAAA
3354 CTCCGAATA
1 C-CCGAA-A
3363 CCCG-AA
1 CCCGAAA
3369 CCCGTTAAAA
1 CCCG---AAA
*
3379 CCCGCAA
1 CCCGAAA
*
3386 CCGGAAA
1 CCCGAAA
*
3393 CACGAAA
1 CCCGAAA
3400 CCCGAAA
1 CCCGAAA
3407 CCCGAACA
1 CCCGAA-A
*
3415 GCCTCGACAT
1 -CC-CGA-AA
3425 CCCGAAA
1 CCCGAAA
3432 CCCG-AA
1 CCCGAAA
3438 CCCGAAAA
1 CCCG-AAA
3446 CCCGAAA
1 CCCGAAA
3453 CCC-AAA
1 CCCGAAA
3459 CCCCGAAA
1 -CCCGAAA
3467 -CCG-AA
1 CCCGAAA
3472 CCCGGAAA
1 CCC-GAAA
3480 CCCGAAA
1 CCCGAAA
3487 -CCGAAA
1 CCCGAAA
3493 CCC-AAA
1 CCCGAAA
3499 -CCGTAAA
1 CCCG-AAA
3506 CCCGAAAA
1 CCCG-AAA
3514 CCCG-AA
1 CCCGAAA
3520 CCTCGAAAA
1 CC-CG-AAA
3529 CCCTGAAA
1 CCC-GAAA
3537 -CCGAAA
1 CCCGAAA
3543 CCCGAACA
1 CCCGAA-A
3551 CCCGAAA
1 CCCGAAA
3558 CCCGAAA
1 CCCGAAA
3565 CCCG-AA
1 CCCGAAA
3571 CCCTGAATA
1 CCC-GAA-A
* *
3580 GCCGGAAC
1 -CCCGAAA
3588 CCCTGAACA
1 CCC-GAA-A
*
3597 CCAGAAA
1 CCCGAAA
3604 CCC-AATA
1 CCCGAA-A
3611 TCCCGAAA
1 -CCCGAAA
3619 CCCGAAA
1 CCCGAAA
3626 -CCGATAA
1 CCCGA-AA
*
3633 CCAGATAA
1 CCCGA-AA
3641 CCCGAATA
1 CCCGAA-A
*
3649 CCCCGACA
1 -CCCGAAA
3657 CCCGAAA
1 CCCGAAA
3664 -CCG-AA
1 CCCGAAA
**
3669 CCCGGCA
1 CCCGAAA
3676 CCCGAAA
1 CCCGAAA
3683 CCCGGAAAA
1 CCC-G-AAA
3692 CCCGCGAAAA
1 -CC-CG-AAA
3702 CCCGAAA
1 CCCGAAA
*
3709 CCCGGCATA
1 CCC-G-AAA
3718 CCCGGAAA
1 CCC-GAAA
*
3726 CCGGAAA
1 CCCGAAA
3733 CCCGTAAA
1 CCCG-AAA
*
3741 ACCGAAA
1 CCCGAAA
3748 CCCGAAA
1 CCCGAAA
3755 CTCTCGAAA
1 C-C-CGAAA
3764 CCCGAATA
1 CCCGAA-A
3772 CCCGAAA
1 CCCGAAA
3779 CCCGTGAAAA
1 CCC--G-AAA
3789 CCCGAAAA
1 CCCG-AAA
3797 CCCG-AA
1 CCCGAAA
3803 CCCG-AA
1 CCCGAAA
3809 CCCGAAAAA
1 CCCG--AAA
*
3818 CCCCGTAA
1 -CCCGAAA
3826 CCCGATATA
1 CCCGA-A-A
*
3835 CCCGGAA
1 CCCGAAA
3842 CCCGAAA
1 CCCGAAA
3849 CCCGACAA
1 CCCGA-AA
3857 CCCGAAA
1 CCCGAAA
*
3864 CCCGGAA
1 CCCGAAA
3871 CCCGGAAAA
1 CCC-G-AAA
*
3880 GCCGAAA
1 CCCGAAA
*
3887 CCCGTACA
1 CCCG-AAA
3895 CCCGAACA
1 CCCGAA-A
*
3903 CCCGACA
1 CCCGAAA
3910 CCCGAAA
1 CCCGAAA
3917 CCCGAAA
1 CCCGAAA
*
3924 CCC-AAC
1 CCCGAAA
3930 CCCTGAAA
1 CCC-GAAA
3938 CCCGAAAAA
1 CCCG--AAA
3947 CCC-AAA
1 CCCGAAA
3953 CCCG-AA
1 CCCGAAA
3959 CCCGAAA
1 CCCGAAA
*
3966 CCCGCAA
1 CCCGAAA
3973 CCCGAAAAAA
1 CCCG---AAA
3983 CCTCGAAA
1 CC-CGAAA
3991 CCCGAAA
1 CCCGAAA
3998 CCCG-AA
1 CCCGAAA
*
4004 CCTCGGAA
1 CC-CGAAA
4012 CCCGATCAA
1 CCCGA--AA
* *
4021 ACCTAAA
1 CCCGAAA
4028 CCCG-AA
1 CCCGAAA
4034 -CCGAAAA
1 CCCG-AAA
4041 CCCGAAA
1 CCCGAAA
4048 TCCCGAAAA
1 -CCCG-AAA
4057 CCCGAAA
1 CCCGAAA
4064 CCCGAAA
1 CCCGAAA
* *
4071 ACCTAAA
1 CCCGAAA
4078 CCCGAAA
1 CCCGAAA
*
4085 CCCGGAA
1 CCCGAAA
*
4092 CCCGGAA
1 CCCGAAA
*
4099 CCCCAAA
1 CCCGAAA
*
4106 ACCGAAA
1 CCCGAAA
*
4113 CCCGAAC
1 CCCGAAA
4120 CGCCGAAA
1 C-CCGAAA
4128 -CCGATAA
1 CCCGA-AA
*
4135 CCTGAAA
1 CCCGAAA
4142 CCCGAAA
1 CCCGAAA
4149 CTCCGAAA
1 C-CCGAAA
4157 CCCGAAA
1 CCCGAAA
4164 CCCGAAA
1 CCCGAAA
4171 CCTCGAAA
1 CC-CGAAA
4179 CCCGAAA
1 CCCGAAA
4186 CCCCGCTAAA
1 -CCCG--AAA
4196 CCCGGTGAAA
1 CCC---GAAA
4206 CCCCGAAAA
1 -CCCG-AAA
4215 CCCTGAAAA
1 CCC-G-AAA
*
4224 TCCGAAAA
1 CCCG-AAA
4232 CCCTGAAA
1 CCC-GAAA
4240 CCCCGAAA
1 -CCCGAAA
4248 CACCGAAA
1 C-CCGAAA
*
4256 CCGGAAA
1 CCCGAAA
4263 CCCGAAA
1 CCCGAAA
*
4270 CCCGCAA
1 CCCGAAA
4277 -CCGAAA
1 CCCGAAA
4283 CCCGAAAA
1 CCCG-AAA
4291 CCCGAAA
1 CCCGAAA
4298 CCCGAAA
1 CCCGAAA
*
4305 GCCGATAA
1 CCCGA-AA
4313 -CCGAGAA
1 CCCGA-AA
4320 CCTCGAAA
1 CC-CGAAA
4328 TCCCGAAA
1 -CCCGAAA
*
4336 -ACGAAA
1 CCCGAAA
4342 CCCGAAA
1 CCCGAAA
4349 CCCGAAAA
1 CCCG-AAA
4357 CCTCGAAA
1 CC-CGAAA
4365 CCCG--A
1 CCCGAAA
*
4370 CCCGCAA
1 CCCGAAA
4377 -CCGAAA
1 CCCGAAA
4383 CCCGAAA
1 CCCGAAA
4390 CCCGAAA
1 CCCGAAA
4397 CCCGTAAA
1 CCCG-AAA
4405 CCCGAAA
1 CCCGAAA
4412 CTCCG-AA
1 C-CCGAAA
4419 CCCGAAA
1 CCCGAAA
4426 CCCGAAA
1 CCCGAAA
4433 CCCGCAAA
1 CCCG-AAA
4441 CCCGAAAA
1 CCCG-AAA
*
4449 TGCCGAATTA
1 -CCCGAA--A
4459 CCCGTATAA
1 CCCG-A-AA
**
4468 CCCTCAA
1 CCCGAAA
4475 CCCGTAAA
1 CCCG-AAA
4483 CCCGAAA
1 CCCGAAA
*
4490 GCCGAAA
1 CCCGAAA
*
4497 CGCGAAA
1 CCCGAAA
*
4504 CTCCG-CA
1 C-CCGAAA
4511 CCCGAAA
1 CCCGAAA
4518 CCCGCAAA
1 CCCG-AAA
4526 CCCGAAA
1 CCCGAAA
4533 CCCGTTAAAA
1 CCCG---AAA
*
4543 CGCTCGTGCAA
1 C-C-C--GAAA
4554 CCCGAATA
1 CCCGAA-A
*
4562 CTCGAAA
1 CCCGAAA
4569 -CCGAAA
1 CCCGAAA
4575 -CCGAAA
1 CCCGAAA
4581 CCCG-AA
1 CCCGAAA
*
4587 CCCGGAAC
1 CCC-GAAA
4595 CCCGAAA
1 CCCGAAA
4602 CCCCGAAA
1 -CCCGAAA
*
4610 CCCCTAAGA
1 -CCCGAA-A
*
4619 CCTGAAA
1 CCCGAAA
4626 CCCG-AA
1 CCCGAAA
4632 CCCGAAA
1 CCCGAAA
4639 CCCGAAAA
1 CCCG-AAA
4647 CCCG-AA
1 CCCGAAA
4653 CCCGAAA
1 CCCGAAA
4660 CCCCGAAA
1 -CCCGAAA
4668 CCCGAAA
1 CCCGAAA
4675 CCCCGATAAA
1 -CCCG--AAA
4685 CCCGAAA
1 CCCGAAA
*
4692 CCCGCCAA
1 CCCG-AAA
4700 CCCGAATA
1 CCCGAA-A
4708 CCCGAACA
1 CCCGAA-A
*
4716 ACCG-AA
1 CCCGAAA
4722 --CGAAAA
1 CCCG-AAA
*
4728 CCCGCAA
1 CCCGAAA
*
4735 CCCGTAA
1 CCCGAAA
4742 CCCGAAA
1 CCCGAAA
4749 CCCGCAATA
1 CCCG-AA-A
4758 -CCGAAAA
1 CCCG-AAA
4765 CCCGTAAA
1 CCCG-AAA
4773 CCCGTAAA
1 CCCG-AAA
4781 CCCGAAA
1 CCCGAAA
4788 CCGCCCGAAAA
1 ---CCCG-AAA
*
4799 ACCG-AA
1 CCCGAAA
4805 CCCGTGAAA
1 CCC--GAAA
4814 CCCGACGAAA
1 -CC--CGAAA
4824 CCCGGAAA
1 CCC-GAAA
*
4832 TCCTGAATA
1 -CCCGAA-A
4841 CCCGAATA
1 CCCGAA-A
4849 --CGAAAA
1 CCCG-AAA
4855 CCCGAAA
1 CCCGAAA
4862 CCCGAAA
1 CCCGAAA
* *
4869 TCCTACAA
1 CCCGA-AA
4877 --CGAAAA
1 CCCG-AAA
4883 CCTCGAAA
1 CC-CGAAA
4891 -CCGAAA
1 CCCGAAA
*
4897 TCCCTAAA
1 -CCCGAAA
4905 CCCGAAA
1 CCCGAAA
4912 CCCGAAA
1 CCCGAAA
4919 CCCGGAAA
1 CCC-GAAA
4927 CCGCGATAA
1 CC-CGA-AA
4936 -CCGAAA
1 CCCGAAA
*
4942 CACTGTCACAA
1 C-CCG--A-AA
4953 CCCGAAA
1 CCCGAAA
4960 CCCAGCGGTAAA
1 -CC--C-G-AAA
4972 CCCGACAA
1 CCCGA-AA
4980 TCCTCGAAA
1 -CC-CGAAA
4989 CCCGAAA
1 CCCGAAA
4996 CCCG-AA
1 CCCGAAA
5002 CCCGATAAA
1 CCCG--AAA
5011 CCCGAAA
1 CCCGAAA
5018 CCCGAAA
1 CCCGAAA
**
5025 TCCCTCAA
1 -CCCGAAA
5033 CCCGAAA
1 CCCGAAA
*
5040 CCCGACA
1 CCCGAAA
5047 CCCGAAA
1 CCCGAAA
5054 --CG-AA
1 CCCGAAA
5058 CCCG-AA
1 CCCGAAA
5064 CCCGAAA
1 CCCGAAA
5071 CCCTGAAA
1 CCC-GAAA
5079 CCCCGAAA
1 -CCCGAAA
5087 CCCTG--A
1 CCC-GAAA
*
5093 CCCAAAA
1 CCCGAAA
5100 CCCGAAA
1 CCCGAAA
5107 CCCGAAA
1 CCCGAAA
5114 CCC-AAA
1 CCCGAAA
5120 CTCCGTAAA
1 C-CCG-AAA
*
5129 CCTTGAAA
1 CC-CGAAA
5137 CCCGAAAA
1 CCCG-AAA
5145 CCCGGAAA
1 CCC-GAAA
5153 CCCGAGGAA
1 CCCGA--AA
*
5162 CCCGAATC
1 CCCGAA-A
*
5170 CCCGACTA
1 CCCGA-AA
5178 CCCTGAAA
1 CCC-GAAA
5186 CCCG-AA
1 CCCGAAA
*
5192 CCCGAACC
1 CCCGAA-A
*
5200 CCCGAACC
1 CCCGAA-A
5208 CCCGAAA
1 CCCGAAA
5215 CCCGAAATA
1 CCCG-AA-A
*
5224 CCCGGGAA
1 CCC-GAAA
5232 CCCGAAA
1 CCCGAAA
5239 CCCCGGAAA
1 -CCC-GAAA
5248 CTCCGAATAA
1 C-CCG-A-AA
5258 CCCTGGAAA
1 CCC--GAAA
* *
5267 CACCTGCTAC
1 C-CC-G-AAA
5277 CCCGAAA
1 CCCGAAA
*
5284 CTCAGAAA
1 C-CCGAAA
5292 -CCGAACA
1 CCCGAA-A
5299 CCTCGAAA
1 CC-CGAAA
5307 CCCTG-AA
1 CCC-GAAA
5314 -CCGAAA
1 CCCGAAA
5320 CCCGGAAA
1 CCC-GAAA
5328 CCCTGAATA
1 CCC-GAA-A
5337 -CCGTAAAA
1 CCCG--AAA
5345 CCTCGAAA
1 CC-CGAAA
5353 CCCGAAA
1 CCCGAAA
5360 CCCGAAA
1 CCCGAAA
*
5367 -GC-AAA
1 CCCGAAA
5372 CCCGAAAA
1 CCCG-AAA
5380 CCCGAAA
1 CCCGAAA
5387 CCCGTACAA
1 CCCG-A-AA
5396 CCCGAAA
1 CCCGAAA
5403 CCCGAAA
1 CCCGAAA
*
5410 TCCTATGAAA
1 -CC--CGAAA
5420 CCCGAAA
1 CCCGAAA
*
5427 CCGGAAA
1 CCCGAAA
5434 CACCAGAATAA
1 C-CC-G-A-AA
5445 CCCGGGAAA
1 CCC--GAAA
5454 CCCG-AA
1 CCCGAAA
5460 -CCGAAA
1 CCCGAAA
5466 CCCGAAA
1 CCCGAAA
5473 -CCGAAA
1 CCCGAAA
*
5479 CACGAAA
1 CCCGAAA
**
5486 CCCGACC
1 CCCGAAA
5493 CCCGAAA
1 CCCGAAA
5500 CCTCGAAA
1 CC-CGAAA
5508 CCCGAATA
1 CCCGAA-A
5516 CCCGAAA
1 CCCGAAA
5523 CCCCGAAA
1 -CCCGAAA
5531 CCCGAAA
1 CCCGAAA
5538 CCCGAAA
1 CCCGAAA
*
5545 CCCGAAC
1 CCCGAAA
5552 CCCGAAA
1 CCCGAAA
5559 CCCGAAA
1 CCCGAAA
*
5566 CCCGCAA
1 CCCGAAA
5573 CCCGAGAA
1 CCCGA-AA
5581 CCCGAAA
1 CCCGAAA
5588 CCCG-AA
1 CCCGAAA
5594 CCCGGAACA
1 CCC-GAA-A
*
5603 TCC--AA
1 CCCGAAA
5608 CCCGAAA
1 CCCGAAA
*
5615 ACCGAAA
1 CCCGAAA
5622 CCCGAATA
1 CCCGAA-A
5630 CCCGAAAA
1 CCCG-AAA
*
5638 CCCAAAA
1 CCCGAAA
5645 CCGCGAAA
1 CC-CGAAA
5653 TCCCTCGAAA
1 --CC-CGAAA
5663 CCCGAAA
1 CCCGAAA
5670 CCCGAAA
1 CCCGAAA
5677 CCCCGAAA
1 -CCCGAAA
*
5685 ACCG-AA
1 CCCGAAA
5691 CCTCGGAAA
1 CC-C-GAAA
5700 -CCGAAA
1 CCCGAAA
*
5706 -CCGACA
1 CCCGAAA
5712 CCCTGAAA
1 CCC-GAAA
5720 CCCCGAAA
1 -CCCGAAA
5728 CCCGATATA
1 CCCGA-A-A
5737 CCCGAAA
1 CCCGAAA
*
5744 ACCGAAA
1 CCCGAAA
5751 CCCGATAATA
1 CCCG--AA-A
**
5761 CAAGAAA
1 CCCGAAA
5768 CCCGAAA
1 CCCGAAA
5775 CCCGAAA
1 CCCGAAA
5782 CTCCGAAA
1 C-CCGAAA
5790 CCCGAAA
1 CCCGAAA
5797 CCCTGTAAA
1 CCC-G-AAA
5806 -CCGAAA
1 CCCGAAA
5812 CCCGTAAA
1 CCCG-AAA
*
5820 ACCGAACA
1 CCCGAA-A
*
5828 ACCGAAA
1 CCCGAAA
5835 CCCGGAAAA
1 CCC-G-AAA
5844 CCCGACAA
1 CCCGA-AA
5852 CTCC-AAA
1 C-CCGAAA
5859 CCCGAATA
1 CCCGAA-A
*
5867 CCGGAAA
1 CCCGAAA
5874 -CCGCAAA
1 CCCG-AAA
5881 -CCG-AA
1 CCCGAAA
5886 CCCGAAA
1 CCCGAAA
5893 CCCTGAAA
1 CCC-GAAA
5901 CCCGGAAA
1 CCC-GAAA
5909 -CCGATAAA
1 CCCG--AAA
*
5917 CCAGAAA
1 CCCGAAA
5924 CCCAGAAA
1 CCC-GAAA
5932 CCCGGGAAA
1 CCC--GAAA
5941 CCCGAAA
1 CCCGAAA
*
5948 CCCGGAA
1 CCCGAAA
5955 CCCGAAA
1 CCCGAAA
*
5962 CCCGACA
1 CCCGAAA
5969 CCCG-AA
1 CCCGAAA
5975 CCCGAAA
1 CCCGAAA
5982 CCCGAAA
1 CCCGAAA
5989 CTCCGAAA
1 C-CCGAAA
5997 CCTCGAAAA
1 CC-CG-AAA
6006 CCCGAAA
1 CCCGAAA
6013 CTCCGTAAA
1 C-CCG-AAA
6022 CCCGCAATTA
1 CCCG-AA--A
6032 CCTCG-AA
1 CC-CGAAA
6039 CCCGAAAAA
1 CCCG--AAA
6048 CTCCGAAA
1 C-CCGAAA
*
6056 ACCGAAA
1 CCCGAAA
6063 -CCGAAAA
1 CCCG-AAA
* *
6070 TCCGGCAA
1 -CCCGAAA
6078 -CCGAAA
1 CCCGAAA
6084 CCCGGAAA
1 CCC-GAAA
6092 CCCGAAA
1 CCCGAAA
6099 CCCGAAA
1 CCCGAAA
6106 CCCG-AA
1 CCCGAAA
6112 CCCTGAAA
1 CCC-GAAA
6120 CCCGAAA
1 CCCGAAA
6127 CCCGAAA
1 CCCGAAA
6134 CCCGAAAA
1 CCCG-AAA
6142 CCCGATAA
1 CCCGA-AA
6150 CCCGAAAAA
1 CCCG--AAA
6159 CCC--AA
1 CCCGAAA
6164 CCCGAAA
1 CCCGAAA
*
6171 -CCGCAA
1 CCCGAAA
*
6177 CCCTATAAA
1 CCC--GAAA
6186 CCCCGACAA
1 -CCCGA-AA
6195 CCCGAAA
1 CCCGAAA
*
6202 CCCCTCAAA
1 -CCC-GAAA
6211 CCCGAAAAAA
1 CCCG---AAA
6221 CCCCGAAA
1 -CCCGAAA
6229 TCCCGACAA
1 -CCCGA-AA
6238 CCCCG-AA
1 -CCCGAAA
6245 CCCGAAA
1 CCCGAAA
6252 CCCGAAA
1 CCCGAAA
*
6259 CCCGCAA
1 CCCGAAA
6266 CCCGAAA
1 CCCGAAA
6273 CCCG-AA
1 CCCGAAA
6279 CCTCGAAA
1 CC-CGAAA
6287 CCCGAAAA
1 CCCG-AAA
6295 CCCGAAAA
1 CCCG-AAA
6303 CCCGAAAA
1 CCCG-AAA
6311 CCCGAAA
1 CCCGAAA
6318 CTCCGTTAAA
1 C-CCG--AAA
6328 -CCG-AA
1 CCCGAAA
6333 -CCGAAA
1 CCCGAAA
6339 CCCCGAAA
1 -CCCGAAA
6347 CCCGAAA
1 CCCGAAA
*
6354 CCCGAACC
1 CCCGAA-A
6362 CCCGAAAA
1 CCCG-AAA
6370 CCCTGAAA
1 CCC-GAAA
*
6378 CCCG-AC
1 CCCGAAA
6384 CCCGAAA
1 CCCGAAA
6391 CCCGAAA
1 CCCGAAA
6398 -CCGATAA
1 CCCGA-AA
*
6405 CCCCCGTATA
1 --CCCG-AAA
6415 -CCGAAA
1 CCCGAAA
6421 -CCGAAAA
1 CCCG-AAA
6428 CCCGAACA
1 CCCGAA-A
6436 CCGGCCGAAA
1 -C--CCGAAA
6446 CCCGAAAA
1 CCCG-AAA
6454 CCCGAAA
1 CCCGAAA
6461 CCC-ATAA
1 CCCGA-AA
6468 CCCGAAA
1 CCCGAAA
6475 CCCG-AA
1 CCCGAAA
6481 CCCGAAA
1 CCCGAAA
6488 CCCG-AA
1 CCCGAAA
6494 CCCGAAA
1 CCCGAAA
*
6501 CCCGACA
1 CCCGAAA
6508 CCGCGAAA
1 CC-CGAAA
6516 CCCCGAAA
1 -CCCGAAA
*
6524 CCCCTAAA
1 -CCCGAAA
6532 CCCGAACA
1 CCCGAA-A
**
6540 CGGGAAA
1 CCCGAAA
6547 CCC-AAA
1 CCCGAAA
*
6553 CATCGAAA
1 C-CCGAAA
6561 CCCGAAA
1 CCCGAAA
6568 CCCGAAA
1 CCCGAAA
6575 CCTC--AA
1 CC-CGAAA
*
6581 CACGAAA
1 CCCGAAA
6588 CCCGAAA
1 CCCGAAA
6595 CCCGAAA
1 CCCGAAA
6602 -CCGAAAA
1 CCCG-AAA
6609 CCCGAGAAA
1 CCC--GAAA
*
6618 TCCCGGACA
1 -CCC-GAAA
6627 CCCTGAAA
1 CCC-GAAA
6635 -CCGAAA
1 CCCGAAA
6641 GCCCGGAAA
1 -CCC-GAAA
6650 CCCGAAA
1 CCCGAAA
6657 -CCGAAA
1 CCCGAAA
*
6663 CGCGAAA
1 CCCGAAA
6670 CCCGAAA
1 CCCGAAA
6677 CCC-AAA
1 CCCGAAA
6683 CCCGAAA
1 CCCGAAA
6690 -CCGAATA
1 CCCGAA-A
6697 CCTCGAAA
1 CC-CGAAA
6705 TCCCGGCAAA
1 -CCC-G-AAA
6715 CCCGAAAA
1 CCCG-AAA
*
6723 CTCGAAAA
1 CCCG-AAA
6731 CCCGAAA
1 CCCGAAA
*
6738 CCCGCAA
1 CCCGAAA
6745 CCACGAACA
1 CC-CGAA-A
*
6754 CCAGGAAA
1 CC-CGAAA
*
6762 TCC-AAA
1 CCCGAAA
*
6768 CCCGAACC
1 CCCGAA-A
6776 CCCGAAA
1 CCCGAAA
6783 CCCGAACA
1 CCCGAA-A
6791 CCCGAAA
1 CCCGAAA
* *
6798 ACCGGAA
1 CCCGAAA
6805 CCCGAAA
1 CCCGAAA
6812 CCCG-AA
1 CCCGAAA
6818 CCCGAAA
1 CCCGAAA
6825 CCCGAAA
1 CCCGAAA
6832 TCCCGAAA
1 -CCCGAAA
6840 CCCGAAA
1 CCCGAAA
6847 CCCGAAA
1 CCCGAAA
*
6854 CCGGAAA
1 CCCGAAA
6861 CCCGAACAA
1 CCCG-A-AA
6870 CCTCGAAAA
1 CC-CG-AAA
*
6879 TCCGAAA
1 CCCGAAA
6886 CCTCGAAAA
1 CC-CG-AAA
6895 CCCGAAA
1 CCCGAAA
6902 CCCCGAAA
1 -CCCGAAA
6910 TCCCGAAAAA
1 -CCCG--AAA
6920 CCCTGAAA
1 CCC-GAAA
*
6928 CCGCGCCAA
1 CC-CG-AAA
6937 -CCGAAA
1 CCCGAAA
*
6943 -CCGATA
1 CCCGAAA
*
6949 CACGAAA
1 CCCGAAA
6956 CCCGAAA
1 CCCGAAA
6963 -CCGATAA
1 CCCGA-AA
6970 CCCGGGATAAA
1 CCC--G--AAA
**
6981 TGCG-AA
1 CCCGAAA
6987 CCCGAGAAA
1 CCC--GAAA
6996 CCCGAAA
1 CCCGAAA
*
7003 CCGTGAAAA
1 CC-CG-AAA
7012 TCCCGAAA
1 -CCCGAAA
7020 CCCG-AA
1 CCCGAAA
7026 --CGAAA
1 CCCGAAA
7031 CCCGAAA
1 CCCGAAA
7038 CCCGAAAA
1 CCCG-AAA
7046 CCCGAAA
1 CCCGAAA
7053 CCCGAAA
1 CCCGAAA
7060 CCCGAAA
1 CCCGAAA
7067 CCCGAACAA
1 CCCG-A-AA
*
7076 CCCGAAC
1 CCCGAAA
7083 CCCGAAA
1 CCCGAAA
*
7090 -CCGACA
1 CCCGAAA
7096 -CCGAAA
1 CCCGAAA
7102 CCC-AAA
1 CCCGAAA
7108 CCCCGAAA
1 -CCCGAAA
7116 CCCGAAAATA
1 CCCG--AA-A
7126 CCCGAAA
1 CCCGAAA
*
7133 CCCGAAC
1 CCCGAAA
7140 CCCGAAAA
1 CCCG-AAA
7148 CCCGAAA
1 CCCGAAA
7155 CCGCGAAA
1 CC-CGAAA
7163 CCCGAAA
1 CCCGAAA
7170 CCCGTGAAA
1 CCC--GAAA
7179 CCCGAATA
1 CCCGAA-A
7187 CCCGAAA
1 CCCGAAA
7194 TCCTCTGGAAA
1 -CC-C--GAAA
*
7205 --AG-AA
1 CCCGAAA
7209 CCCG-AA
1 CCCGAAA
7215 CTTCCGCAAA
1 C--CCG-AAA
7225 CCCGAAA
1 CCCGAAA
7232 TCCCG-AA
1 -CCCGAAA
7239 CCCGAAA
1 CCCGAAA
*
7246 CACGGAAA
1 C-CCGAAA
7254 CCC-AAA
1 CCCGAAA
* *
7260 CCGCTATA
1 CC-CGAAA
7268 -CCG-AA
1 CCCGAAA
7273 CCCGAAA
1 CCCGAAA
7280 CCCGAAA
1 CCCGAAA
7287 CCCGAAAA
1 CCCG-AAA
*
7295 CCCGACA
1 CCCGAAA
7302 -CCGAAA
1 CCCGAAA
*
7308 CCCGACA
1 CCCGAAA
7315 CCCGAAA
1 CCCGAAA
* *
7322 CCCTGCAT
1 CCC-GAAA
7330 CCCGAAAA
1 CCCG-AAA
7338 CCCGAAA
1 CCCGAAA
7345 CCCGAAA
1 CCCGAAA
7352 --CGAAA
1 CCCGAAA
7357 CCCGAAA
1 CCCGAAA
7364 CCCGAAAA
1 CCCG-AAA
7372 CTCCCGAAGA
1 --CCCGAA-A
7382 CCCCGAAA
1 -CCCGAAA
7390 CCCG-AA
1 CCCGAAA
7396 CCCGTAAA
1 CCCG-AAA
7404 CCCGAAA
1 CCCGAAA
7411 CCCGCAAA
1 CCCG-AAA
7419 CTCCTGGGAAA
1 C-CC---GAAA
*
7430 ACCGAAA
1 CCCGAAA
7437 CCCGGAAA
1 CCC-GAAA
7445 CCCTGAAAA
1 CCC-G-AAA
7454 CCCGAAAA
1 CCCG-AAA
7462 TCCCGAAA
1 -CCCGAAA
7470 CCCCGAAA
1 -CCCGAAA
7478 CCCGAAA
1 CCCGAAA
*
7485 CCGGAAA
1 CCCGAAA
*
7492 CCAGCTAAA
1 CC--CGAAA
7501 CCCGAAA
1 CCCGAAA
7508 CCCGAAA
1 CCCGAAA
7515 CCCGGAAATA
1 CCC-G-AA-A
7525 CCCGAAA
1 CCCGAAA
7532 -CCGAAAA
1 CCCG-AAA
7539 CCACGAAA
1 CC-CGAAA
*
7547 CCCGCAA
1 CCCGAAA
7554 CCCGTAAA
1 CCCG-AAA
*
7562 CACGAATTTA
1 CCCGAA---A
*
7572 CCCGCAA
1 CCCGAAA
7579 CCCG-AA
1 CCCGAAA
7585 -CCGAAA
1 CCCGAAA
7591 CCCGAAA
1 CCCGAAA
*
7598 CCCGCAA
1 CCCGAAA
*
7605 CCC-CAA
1 CCCGAAA
7611 --CGAAA
1 CCCGAAA
7616 CCCCG-AA
1 -CCCGAAA
7623 -CCGAAA
1 CCCGAAA
7629 CCCGAAA
1 CCCGAAA
7636 CCCGAAA
1 CCCGAAA
*
7643 CCCGACA
1 CCCGAAA
*
7650 -CCGAAC
1 CCCGAAA
*
7656 CCCGCAA
1 CCCGAAA
*
7663 CCAGAAAA
1 CCCG-AAA
*
7671 ACCGACAA
1 CCCGA-AA
7679 CTCCCGAAA
1 --CCCGAAA
*
7688 TCACGAAA
1 -CCCGAAA
7696 CCCGGATAA
1 CCC-GA-AA
7705 CCCGAAA
1 CCCGAAA
7712 TGCCCTGAAA
1 --CCC-GAAA
7722 -CCGAAA
1 CCCGAAA
*
7728 -CCGAAC
1 CCCGAAA
7734 CCCTGAAA
1 CCC-GAAA
7742 CCCGAAA
1 CCCGAAA
7749 CCCCG-AA
1 -CCCGAAA
7756 CCCGAAA
1 CCCGAAA
*
7763 CCCCCGAAC
1 --CCCGAAA
*
7772 CCCTGACA
1 CCC-GAAA
7780 CCCGAAA
1 CCCGAAA
7787 CCCGAATAA
1 CCCG-A-AA
*
7796 CCCTAAA
1 CCCGAAA
7803 TCCCGAAA
1 -CCCGAAA
7811 CCTCGAAA
1 CC-CGAAA
7819 CCCGATAAGA
1 CCCG--AA-A
* *
7829 GCCGAGCTA
1 CCCGA--AA
7838 CCCGAAA
1 CCCGAAA
7845 CGCCGAAA
1 C-CCGAAA
7853 CTCCGAAA
1 C-CCGAAA
7861 CCCTGAAA
1 CCC-GAAA
7869 CCCGAAA
1 CCCGAAA
7876 CCCGAAA
1 CCCGAAA
**
7883 CGGAGGAAA
1 C--CCGAAA
7892 CCC-AAA
1 CCCGAAA
7898 CCCGAAA
1 CCCGAAA
7905 CCCGAAAA
1 CCCG-AAA
7913 TCCCGTAATA
1 -CCCG-AA-A
7923 -CCGAAA
1 CCCGAAA
7929 CCCAGAAA
1 CCC-GAAA
*
7937 CCCGTACA
1 CCCG-AAA
7945 CCCG-AA
1 CCCGAAA
7951 -CCGAAA
1 CCCGAAA
*
7957 --CTAAA
1 CCCGAAA
*
7962 ACCGAAAAA
1 CCCG--AAA
7971 CCCGATAA
1 CCCGA-AA
7979 CCCGAAAA
1 CCCG-AAA
7987 CTCCG---
1 C-CCGAAA
*
7992 CTCGAACA
1 CCCGAA-A
8000 CCCTGAAA
1 CCC-GAAA
8008 CCCGAAA
1 CCCGAAA
8015 CCGCTGAAA
1 CC-C-GAAA
8024 -CCGAATA
1 CCCGAA-A
8031 CCCGAAA
1 CCCGAAA
8038 CCCGAAA
1 CCCGAAA
*
8045 CCCGGAA
1 CCCGAAA
8052 CCCGATAAATA
1 CCCG---AA-A
8063 CTCCCGTATCAA
1 --CCCG-A--AA
*
8075 CCCTAAA
1 CCCGAAA
* *
8082 TCCGAAC
1 CCCGAAA
8089 CCCGAAA
1 CCCGAAA
8096 CCCGAAA
1 CCCGAAA
*
8103 CCCGAAC
1 CCCGAAA
8110 CCCGTAAA
1 CCCG-AAA
8118 CCCGAAA
1 CCCGAAA
*
8125 CCTCGAAC
1 CC-CGAAA
*
8133 CCCGCCAA
1 CCCG-AAA
8141 CCCGAAA
1 CCCGAAA
8148 CCCGATAA
1 CCCGA-AA
8156 CCCGGTAAA
1 CCC-G-AAA
8165 -CCGTAAA
1 CCCG-AAA
8172 CCCGAAAA
1 CCCG-AAA
8180 CCCGAAA
1 CCCGAAA
*
8187 -CCGACA
1 CCCGAAA
8193 CCCGAAAA
1 CCCG-AAA
8201 CCCGAAA
1 CCCGAAA
8208 CCCGAAAAA
1 CCCG--AAA
8217 CCCGAAA
1 CCCGAAA
8224 CCCGAAA
1 CCCGAAA
8231 CTCCCGAAA
1 --CCCGAAA
8240 CCCGTAAAA
1 CCCG--AAA
*
8249 CCCCGCAA
1 -CCCGAAA
8257 CCCGAAA
1 CCCGAAA
8264 CCCG-AA
1 CCCGAAA
8270 CCCGAAAA
1 CCCG-AAA
8278 CCCGAAA
1 CCCGAAA
8285 --CGAAA
1 CCCGAAA
8290 CCCGTAAA
1 CCCG-AAA
8298 CCCTGAATA
1 CCC-GAA-A
8307 CCCGAAA
1 CCCGAAA
8314 CCC-AACA
1 CCCGAA-A
8321 CCCG-AA
1 CCCGAAA
8327 CCCGAAA
1 CCCGAAA
*
8334 CCCTGGAACT
1 CCC--GAA-A
8344 CCCGAAA
1 CCCGAAA
*
8351 -CCGCAA
1 CCCGAAA
8357 CCCGCAAA
1 CCCG-AAA
8365 -CCGAAA
1 CCCGAAA
8371 CCCGAAAAA
1 CCCG--AAA
8380 CCCGAAA
1 CCCGAAA
* *
8387 CCCGCAC
1 CCCGAAA
8394 CCCGGAAA
1 CCC-GAAA
8402 CGCCGAAA
1 C-CCGAAA
* *
8410 GCCGCAA
1 CCCGAAA
*
8417 CTCCTAAA
1 C-CCGAAA
8425 CCCGAAAA
1 CCCG-AAA
* *
8433 CCCTAAC
1 CCCGAAA
8440 CCCGAAA
1 CCCGAAA
8447 CCCGGAAA
1 CCC-GAAA
8455 CCCGAAA
1 CCCGAAA
8462 -CCGAAA
1 CCCGAAA
8468 CCCGGAAA
1 CCC-GAAA
8476 CCCGAAA
1 CCCGAAA
8483 CCCGAAA
1 CCCGAAA
8490 CCCGAAA
1 CCCGAAA
8497 CCCGGAAA
1 CCC-GAAA
*
8505 ACCGAAAA
1 CCCG-AAA
8513 CCC-AAA
1 CCCGAAA
*
8519 TCCGAAAA
1 CCCG-AAA
8527 CCCGAAA
1 CCCGAAA
8534 CCTCGAAA
1 CC-CGAAA
8542 CCCGAAA
1 CCCGAAA
*
8549 TCCG-AA
1 CCCGAAA
8555 -CCGAAA
1 CCCGAAA
8561 CCCGAAA
1 CCCGAAA
*
8568 CCCTAAAA
1 CCC-GAAA
8576 CCCTGAAAA
1 CCC-G-AAA
8585 CCCGAAA
1 CCCGAAA
**
8592 CCCGCCA
1 CCCGAAA
8599 CCCGATAA
1 CCCGA-AA
8607 CCCGAAA
1 CCCGAAA
8614 CCCGAAA
1 CCCGAAA
8621 CCCTGAAA
1 CCC-GAAA
*
8629 -CCGATA
1 CCCGAAA
8635 CCCGAAAA
1 CCCG-AAA
*
8643 ACCGAAA
1 CCCGAAA
*
8650 CCCGAAC
1 CCCGAAA
8657 CCCG-AA
1 CCCGAAA
*
8663 CCCGGACA
1 CCC-GAAA
*
8671 TCCGAAA
1 CCCGAAA
8678 CCCGAAA
1 CCCGAAA
8685 CCCGGATAA
1 CCC-GA-AA
8694 CCCGAAA
1 CCCGAAA
8701 --CGAAA
1 CCCGAAA
8706 CCCGAAA
1 CCCGAAA
8713 CTCCGATAA
1 C-CCGA-AA
8722 CCCGAAAA
1 CCCG-AAA
8730 CCCGAAA
1 CCCGAAA
8737 CCACAGAAA
1 CC-C-GAAA
*
8746 GCCGAAAAA
1 CCCG--AAA
8755 CCTCGAAAA
1 CC-CG-AAA
*
8764 ACC-AAA
1 CCCGAAA
8770 CCCGAAA
1 CCCGAAA
8777 CCCGTAAA
1 CCCG-AAA
8785 CCCGAAA
1 CCCGAAA
8792 -CCGTAAGA
1 CCCG-AA-A
8800 -CCGAAA
1 CCCGAAA
8806 CCCGAAA
1 CCCGAAA
8813 CCCG-AA
1 CCCGAAA
*
8819 CCCGTAA
1 CCCGAAA
8826 CCCGATGGAA
1 CCCGA---AA
*
8836 CCCGCAA
1 CCCGAAA
*
8843 -CCGAAC
1 CCCGAAA
8849 CCACGAAA
1 CC-CGAAA
8857 CCCGAAA
1 CCCGAAA
8864 CCCGAAA
1 CCCGAAA
*
8871 CCCGAAC
1 CCCGAAA
8878 CCCGAAA
1 CCCGAAA
8885 --CGAAA
1 CCCGAAA
*
8890 TCCG-AA
1 CCCGAAA
8896 CCCGCAGAA
1 CCCG-A-AA
*
8905 -ACGAAA
1 CCCGAAA
*
8911 ACCGAAA
1 CCCGAAA
8918 -CCGAAA
1 CCCGAAA
*
8924 CCGGAAA
1 CCCGAAA
8931 CCCGAAA
1 CCCGAAA
8938 CCCGAAA
1 CCCGAAA
8945 CCCGAAA
1 CCCGAAA
8952 CCC-AAA
1 CCCGAAA
8958 CCCGAAA
1 CCCGAAA
*
8965 CCCGCAA
1 CCCGAAA
8972 CCCGAAAAA
1 CCCG--AAA
8981 CCCGAAA
1 CCCGAAA
*
8988 ACCGTAAA
1 CCCG-AAA
*
8996 CCCG-CA
1 CCCGAAA
9002 CCCGTAAA
1 CCCG-AAA
9010 CCCTGAAAA
1 CCC-G-AAA
9019 CCCGAAA
1 CCCGAAA
9026 CCCGAAAA
1 CCCG-AAA
*
9034 CCTCGACA
1 CC-CGAAA
*
9042 CCTGGAAA
1 CC-CGAAA
9050 CCCGAAA
1 CCCGAAA
9057 CCCGCGAAAA
1 -CC-CG-AAA
9067 CCCCGAAA
1 -CCCGAAA
9075 CTCCGAAA
1 C-CCGAAA
9083 CCCGAAA
1 CCCGAAA
9090 --CGAAA
1 CCCGAAA
9095 CCC-AAA
1 CCCGAAA
9101 CCCTTTGAATA
1 CCC---GAA-A
9112 CCCGAAA
1 CCCGAAA
9119 CCCGCATAA
1 CCCG-A-AA
9128 CCCGAAA
1 CCCGAAA
*
9135 CCCTAAA
1 CCCGAAA
9142 CCCGAAA
1 CCCGAAA
9149 CCCGAAA
1 CCCGAAA
9156 CCCGCAAA
1 CCCG-AAA
*
9164 TCCCGACA
1 -CCCGAAA
*
9172 CCTAGAACA
1 CC-CGAA-A
9181 CCCGAAA
1 CCCGAAA
*
9188 CCCGCAA
1 CCCGAAA
*
9195 CTCCG-AC
1 C-CCGAAA
9202 CCCG-AA
1 CCCGAAA
*
9208 CCCGAAC
1 CCCGAAA
9215 CCCGAAA
1 CCCGAAA
9222 CCCGACTAA
1 CCCGA--AA
9231 -CCGCAAA
1 CCCG-AAA
9238 CACCG-AA
1 C-CCGAAA
9245 CCCGAAA
1 CCCGAAA
9252 CCCGAAA
1 CCCGAAA
9259 CCCGTACAA
1 CCCG-A-AA
*
9268 CCGGAAA
1 CCCGAAA
9275 -CCGAAA
1 CCCGAAA
9281 CCCGAATA
1 CCCGAA-A
*
9289 ACCGAAA
1 CCCGAAA
9296 CTCCGAACAAA
1 C-CCG---AAA
9307 CCCGAAA
1 CCCGAAA
*
9314 CCGAGAAA
1 CC-CGAAA
9322 CCCGAAA
1 CCCGAAA
9329 CCCGTAAA
1 CCCG-AAA
9337 CCCG-AA
1 CCCGAAA
*
9343 CACGAAA
1 CCCGAAA
9350 CCCGAAA
1 CCCGAAA
9357 CCCGAAA
1 CCCGAAA
9364 CCCGAAA
1 CCCGAAA
9371 CCCGAACA
1 CCCGAA-A
9379 CCCGAAA
1 CCCGAAA
9386 CCCGAAA
1 CCCGAAA
9393 -CCGACAA
1 CCCGA-AA
9400 CCCGTAAA
1 CCCG-AAA
*
9408 CCCGACA
1 CCCGAAA
*
9415 CGCGAAA
1 CCCGAAA
9422 CCCGAAA
1 CCCGAAA
9429 -CCGAAA
1 CCCGAAA
9435 CCCGAAA
1 CCCGAAA
*
9442 CCCGCCGAA
1 CCCG--AAA
9451 CCCGAAA
1 CCCGAAA
9458 -CCG-AA
1 CCCGAAA
9463 -CCGAAA
1 CCCGAAA
*
9469 CCTGGAAA
1 CC-CGAAA
9477 CCCGAAA
1 CCCGAAA
9484 -CCGAAAA
1 CCCG-AAA
9491 CTCCGAAA
1 C-CCGAAA
9499 CCCCGATAA
1 -CCCGA-AA
9508 CCCG-AA
1 CCCGAAA
9514 CCC-AAA
1 CCCGAAA
9520 CCCGATAA
1 CCCGA-AA
9528 CCCGAAAA
1 CCCG-AAA
*
9536 CTCCGCAA
1 C-CCGAAA
9544 CCCGAAA
1 CCCGAAA
*
9551 CCCGGACA
1 CCC-GAAA
*
9559 CCCTAAA
1 CCCGAAA
9566 CCCGAAATA
1 CCCG-AA-A
9575 CCCGAAA
1 CCCGAAA
9582 CCCGGAAA
1 CCC-GAAA
*
9590 -CCGCAA
1 CCCGAAA
9596 CCCGAAAA
1 CCCG-AAA
9604 CCCGAAA
1 CCCGAAA
9611 CCCTCGAATA
1 -CC-CGAA-A
9621 CCCGAAAAAA
1 CCCG---AAA
9631 CCCCGAGAAA
1 -CCC--GAAA
9641 CCCGAAA
1 CCCGAAA
9648 CCTCGAAA
1 CC-CGAAA
*
9656 CCCGGAGTA
1 CCC-GA-AA
9665 CCTCGACAA
1 CC-CGA-AA
9674 CCCGTAAA
1 CCCG-AAA
9682 CCCGAAA
1 CCCGAAA
9689 CCCGAAA
1 CCCGAAA
*
9696 GCCTCGGAA
1 -CC-CGAAA
9705 --CGAAA
1 CCCGAAA
9710 --CGAAA
1 CCCGAAA
9715 CCCTGAAA
1 CCC-GAAA
9723 CCCGAAA
1 CCCGAAA
*
9730 CCTCG-CA
1 CC-CGAAA
9737 CACCGAAA
1 C-CCGAAA
9745 -CCGAAA
1 CCCGAAA
9751 CCCGAAA
1 CCCGAAA
*
9758 CCGGAAA
1 CCCGAAA
9765 TCCCCGAAA
1 --CCCGAAA
9774 CCCGAAA
1 CCCGAAA
* *
9781 TACGGAAA
1 -CCCGAAA
9789 CCCGGAAA
1 CCC-GAAA
*
9797 CCTCGAAT
1 CC-CGAAA
9805 CCCGAAA
1 CCCGAAA
9812 TCCCGAAA
1 -CCCGAAA
9820 CCCGGAAA
1 CCC-GAAA
9828 CCCGGAAA
1 CCC-GAAA
9836 CCCG-AA
1 CCCGAAA
*
9842 CCTCTAAA
1 CC-CGAAA
9850 CCTCGGAAA
1 CC-C-GAAA
9859 CCCGATAA
1 CCCGA-AA
* *
9867 TCCGCAA
1 CCCGAAA
9874 CCCGATAA
1 CCCGA-AA
9882 CCCGAAA
1 CCCGAAA
9889 CCCGAGAAA
1 CCC--GAAA
9898 CCCGCAAA
1 CCCG-AAA
*
9906 TCCGAAA
1 CCCGAAA
9913 CCCGAAA
1 CCCGAAA
9920 CCCGTAGAA
1 CCCG-A-AA
9929 TCCCG-AA
1 -CCCGAAA
9936 CCCGGATAA
1 CCC-GA-AA
9945 CCCTGTAAA
1 CCC-G-AAA
9954 -CCGAATA
1 CCCGAA-A
*
9961 CCTG-AA
1 CCCGAAA
9967 -CCGAAA
1 CCCGAAA
9973 CCGCGAAA
1 CC-CGAAA
*
9981 CCCGGCAA
1 CCC-GAAA
9989 CCCGAAA
1 CCCGAAA
9996 CCCGGAAA
1 CCC-GAAA
10004 CCCGAAA
1 CCCGAAA
*
10011 CCCGAAC
1 CCCGAAA
10018 CCCGAAA
1 CCCGAAA
10025 -CCGAAA
1 CCCGAAA
10031 CCCG-AA
1 CCCGAAA
10037 -CCGAAA
1 CCCGAAA
10043 CCCGAAA
1 CCCGAAA
10050 -CCGAAA
1 CCCGAAA
10056 -CCGAAA
1 CCCGAAA
10062 -CCGAAA
1 CCCGAAA
10068 -CCGAAA
1 CCCGAAA
10074 -CCGAAA
1 CCCGAAA
10080 -CCGACAA
1 CCCGA-AA
10087 CCCGAAA
1 CCCGAAA
*
10094 CCCTAAAA
1 CCC-GAAA
10102 CCCGAAA
1 CCCGAAA
10109 CCCG-AA
1 CCCGAAA
10115 CCCGAAA
1 CCCGAAA
10122 CCCGAAA
1 CCCGAAA
*
10129 ACCG-AA
1 CCCGAAA
10135 CCCGAAA
1 CCCGAAA
10142 TCCCGAAA
1 -CCCGAAA
10150 CCCGAAA
1 CCCGAAA
10157 CCCGAAA
1 CCCGAAA
10164 CCCGAAA
1 CCCGAAA
10171 CCCG-AA
1 CCCGAAA
10177 CCCGAAA
1 CCCGAAA
10184 CCCGTAAA
1 CCCG-AAA
10192 CCCGAAA
1 CCCGAAA
*
10199 CCCGTAAC
1 CCCG-AAA
10207 CCCGAAA
1 CCCGAAA
10214 CCCGAAA
1 CCCGAAA
10221 CCCGATTAA
1 CCCGA--AA
10230 CCCGAAAA
1 CCCG-AAA
*
10238 CCCG-TA
1 CCCGAAA
10244 CCCGGACAA
1 CCC-GA-AA
10253 CCCCGAAA
1 -CCCGAAA
10261 CCCGGAAA
1 CCC-GAAA
10269 CCCCGAAA
1 -CCCGAAA
10277 CCCCG-AA
1 -CCCGAAA
10284 CCCGAAA
1 CCCGAAA
10291 CCCGAAA
1 CCCGAAA
10298 CTCCGAAA
1 C-CCGAAA
*
10306 CCCGATA
1 CCCGAAA
10313 -CCGAAA
1 CCCGAAA
*
10319 CCCGCTAA
1 CCCG-AAA
10327 CCCGAAA
1 CCCGAAA
10334 TCCCGAAAA
1 -CCCG-AAA
*
10343 CCCGAAC
1 CCCGAAA
10350 CCCGAAA
1 CCCGAAA
10357 CCCGAAA
1 CCCGAAA
10364 CCCGAAA
1 CCCGAAA
10371 CCCGATAA
1 CCCGA-AA
10379 TCCCGAAA
1 -CCCGAAA
10387 CCCGAAA
1 CCCGAAA
*
10394 CCGGAAA
1 CCCGAAA
10401 CCCGCAAAA
1 CCCG--AAA
*
10410 CCCGGAA
1 CCCGAAA
10417 CCCGAAA
1 CCCGAAA
10424 CCCGAAAA
1 CCCG-AAA
10432 CCCGAAAA
1 CCCG-AAA
*
10440 CCCGCAA
1 CCCGAAA
10447 CCCG-AA
1 CCCGAAA
10453 CCCGAAA
1 CCCGAAA
10460 CCCGAAA
1 CCCGAAA
10467 CCCGAATAA
1 CCCG-A-AA
10476 TCTCCGAAA
1 -C-CCGAAA
10485 CCCGAAA
1 CCCGAAA
10492 CCCGAATGA
1 CCCGAA--A
10501 CGCCGAACA
1 C-CCGAA-A
10510 CCCGATCAA
1 CCCGA--AA
10519 CCCGAAAA
1 CCCG-AAA
10527 CCCGGAAA
1 CCC-GAAA
10535 -CCGAAA
1 CCCGAAA
10541 CCCGAAA
1 CCCGAAA
10548 CCCGGAAA
1 CCC-GAAA
10556 CCCGAAA
1 CCCGAAA
10563 CCCGTAAA
1 CCCG-AAA
10571 CCCGTAAA
1 CCCG-AAA
*
10579 CCCGCAA
1 CCCGAAA
10586 CCCGAAA
1 CCCGAAA
10593 CCCG-AA
1 CCCGAAA
10599 CCCTGAAA
1 CCC-GAAA
*
10607 CCCGAAC
1 CCCGAAA
10614 CCCGAAA
1 CCCGAAA
10621 -CCGAAA
1 CCCGAAA
10627 CCCTGAAA
1 CCC-GAAA
*
10635 CCCGCAA
1 CCCGAAA
10642 CCCGCAAA
1 CCCG-AAA
10650 --CGAAA
1 CCCGAAA
10655 --C-AAA
1 CCCGAAA
*
10659 TCCGAAA
1 CCCGAAA
10666 CCCGAGGAA
1 CCCGA--AA
10675 --C-AAA
1 CCCGAAA
10679 CCCGAACA
1 CCCGAA-A
*
10687 CCGGAAA
1 CCCGAAA
10694 CCCGGAAA
1 CCC-GAAA
10702 CCCGAAA
1 CCCGAAA
*
10709 CCAG-AA
1 CCCGAAA
10715 -CCGAAA
1 CCCGAAA
10721 -CCGAATA
1 CCCGAA-A
10728 CCCGAAAAA
1 CCCG--AAA
*
10737 CCCGACAT
1 CCCGA-AA
10745 CCCGGTAAA
1 CCC-G-AAA
10754 CCCGAAA
1 CCCGAAA
10761 CCCGAACA
1 CCCGAA-A
*
10769 CCCGAAC
1 CCCGAAA
10776 CCCGTAATA
1 CCCG-AA-A
*
10785 CCCGAACC
1 CCCGAA-A
*
10793 CCCGAACC
1 CCCGAA-A
10801 CTCCGAAA
1 C-CCGAAA
10809 -CCGAAA
1 CCCGAAA
10815 CCCGAAA
1 CCCGAAA
10822 CCCGAAA
1 CCCGAAA
10829 CCCGAAA
1 CCCGAAA
10836 CCCGAAA
1 CCCGAAA
10843 -CCGAAA
1 CCCGAAA
* *
10849 CCCGCAC
1 CCCGAAA
10856 CCCGAACA
1 CCCGAA-A
10864 TCCCGAAA
1 -CCCGAAA
10872 CTCCGAAA
1 C-CCGAAA
10880 CCCGCGAAA
1 -CC-CGAAA
10889 CCCGAAA
1 CCCGAAA
*
10896 CCCTAAA
1 CCCGAAA
10903 CCCGAAA
1 CCCGAAA
10910 -CCGATATA
1 CCCGA-A-A
*
10918 ACCG-AA
1 CCCGAAA
10924 CCCG-AA
1 CCCGAAA
10930 CCCGAAA
1 CCCGAAA
10937 CCCGAAA
1 CCCGAAA
10944 CCCG-AA
1 CCCGAAA
10950 CCCGAAA
1 CCCGAAA
10957 --CGAGAA
1 CCCGA-AA
*
10963 CCCTAAA
1 CCCGAAA
10970 CCCGAAAA
1 CCCG-AAA
10978 CCCGAAA
1 CCCGAAA
*
10985 CCCGACA
1 CCCGAAA
10992 CCCTTGATAA
1 CCC--GA-AA
11002 CTCCGAAA
1 C-CCGAAA
11010 -CCGAAA
1 CCCGAAA
11016 -CCGAAA
1 CCCGAAA
11022 CCCGAAA
1 CCCGAAA
11029 CCCGAAA
1 CCCGAAA
11036 CCCGAAA
1 CCCGAAA
*
11043 ACCGAAA
1 CCCGAAA
11050 CCCG-AA
1 CCCGAAA
11056 -CCGAAA
1 CCCGAAA
11062 CCCCGAATA
1 -CCCGAA-A
11071 CCCG-AA
1 CCCGAAA
11077 CCCGAAACA
1 CCCG-AA-A
11086 CCCGAGAAA
1 CCC--GAAA
11095 CCCGAAA
1 CCCGAAA
11102 CCCGTAAA
1 CCCG-AAA
11110 -CCGAAA
1 CCCGAAA
11116 CCCGGAAA
1 CCC-GAAA
*
11124 CCCGAAC
1 CCCGAAA
11131 CCGACGAACA
1 CC--CGAA-A
11141 CCCGAAA
1 CCCGAAA
*
11148 TCCG-AA
1 CCCGAAA
11154 CCCGAAA
1 CCCGAAA
* *
11161 TCCAGACA
1 -CCCGAAA
11169 CCCGAAA
1 CCCGAAA
11176 CTCCGAAA
1 C-CCGAAA
11184 CCCGACACA
1 CCCGA-A-A
11193 CCCGAAA
1 CCCGAAA
11200 -CCGAAA
1 CCCGAAA
11206 CCCGTAAA
1 CCCG-AAA
11214 CCCGAAA
1 CCCGAAA
11221 -CCGAAA
1 CCCGAAA
11227 CCCGAAA
1 CCCGAAA
* *
11234 TCCAGTCTAA
1 -CCCG--AAA
11244 CCCGGAGAA
1 CCC-GA-AA
11253 CCCCGAAA
1 -CCCGAAA
11261 CCCCGAAA
1 -CCCGAAA
11269 CCCCG-AA
1 -CCCGAAA
11276 CCCGAAA
1 CCCGAAA
11283 CCCGAAA
1 CCCGAAA
* *
11290 ACCG-CA
1 CCCGAAA
*
11296 CCCGGATAC
1 CCC-GA-AA
11305 CCCGAATA
1 CCCGAA-A
11313 CCCGATAA
1 CCCGA-AA
11321 CCCTCGAAACA
1 -CC-CG-AA-A
*
11332 CCCGAAC
1 CCCGAAA
11339 CCCGAAA
1 CCCGAAA
11346 CCCG-AA
1 CCCGAAA
11352 CCCGAAA
1 CCCGAAA
11359 CCCGAAA
1 CCCGAAA
11366 CCTCGAAA
1 CC-CGAAA
11374 CCCGAAA
1 CCCGAAA
11381 CCCCGAAA
1 -CCCGAAA
11389 -CCGAAA
1 CCCGAAA
*
11395 -CCGTACA
1 CCCG-AAA
11402 CCCGAAA
1 CCCGAAA
*
11409 CCCGCAA
1 CCCGAAA
11416 CCCGTAAA
1 CCCG-AAA
11424 CCCGAAA
1 CCCGAAA
11431 CCCG-AA
1 CCCGAAA
11437 CCCGAATA
1 CCCGAA-A
*
11445 CCCGCAA
1 CCCGAAA
11452 CCCGAAATA
1 CCCG-AA-A
11461 CCCG--A
1 CCCGAAA
***
11466 TTTGAAA
1 CCCGAAA
11473 CTCCGAGAAA
1 C-CC--GAAA
11483 CCCGGAAA
1 CCC-GAAA
*
11491 ACCG--A
1 CCCGAAA
*
11496 CCCTAAA
1 CCCGAAA
11503 CCCGAAA
1 CCCGAAA
11510 CCCGAAA
1 CCCGAAA
11517 CCCG-AA
1 CCCGAAA
*
11523 CCAGAAA
1 CCCGAAA
11530 -CCGAAA
1 CCCGAAA
11536 CCCGAAAA
1 CCCG-AAA
*
11544 CCCGAAC
1 CCCGAAA
11551 CCCGAAAA
1 CCCG-AAA
11559 CCCGAAA
1 CCCGAAA
11566 CCCGAAA
1 CCCGAAA
*
11573 CCCGAACC
1 CCCGAA-A
11581 CCGCGAAA
1 CC-CGAAA
11589 CCCGAAA
1 CCCGAAA
11596 CCCCGATAA
1 -CCCGA-AA
*
11605 ACCGAAA
1 CCCGAAA
11612 CCCGAAA
1 CCCGAAA
11619 CCCCGAAA
1 -CCCGAAA
11627 CCCGAATA
1 CCCGAA-A
*
11635 TCCGTAAA
1 CCCG-AAA
11643 -CCGAAA
1 CCCGAAA
11649 CCCG-AA
1 CCCGAAA
11655 CCCGAAA
1 CCCGAAA
11662 CCCGAAA
1 CCCGAAA
11669 CCCGAAAA
1 CCCG-AAA
*
11677 CCAGAAA
1 CCCGAAA
11684 CCCGAAA
1 CCCGAAA
11691 CTTCCCGAAA
1 ---CCCGAAA
11701 -CCGAAA
1 CCCGAAA
11707 CCCGAAA
1 CCCGAAA
11714 CCCGACAA
1 CCCGA-AA
11722 CCCGAATAA
1 CCCG-A-AA
11731 CCCG-AA
1 CCCGAAA
* *
11737 CCCTAAC
1 CCCGAAA
11744 CCCGAAA
1 CCCGAAA
11751 CCCG-AA
1 CCCGAAA
11757 CCC-AGAA
1 CCCGA-AA
11764 CCCGAAA
1 CCCGAAA
11771 CCCGAATA
1 CCCGAA-A
11779 CCCGAAA
1 CCCGAAA
11786 CCCCGAAAA
1 -CCCG-AAA
11795 CCCGAAA
1 CCCGAAA
11802 CCCTGAAA
1 CCC-GAAA
11810 CCCGAAA
1 CCCGAAA
11817 -CCGTAAA
1 CCCG-AAA
11824 CCCGAAA
1 CCCGAAA
*
11831 CCCCGCAA
1 -CCCGAAA
11839 CCCTGAAA
1 CCC-GAAA
11847 CCCGAAA
1 CCCGAAA
11854 CCCGGAAA
1 CCC-GAAA
11862 CCCGAAA
1 CCCGAAA
11869 CCC-AGAA
1 CCCGA-AA
11876 CCCGAAAA
1 CCCG-AAA
11884 CCCGAAA
1 CCCGAAA
11891 CCCCG-AA
1 -CCCGAAA
11898 CTCCGAAA
1 C-CCGAAA
*
11906 CCCGCAA
1 CCCGAAA
11913 CCCGAAA
1 CCCGAAA
11920 CCCGAAA
1 CCCGAAA
11927 CCCGAAA
1 CCCGAAA
11934 CCCGAATA
1 CCCGAA-A
*
11942 CCGAGAAA
1 CC-CGAAA
*
11950 CCCGAAC
1 CCCGAAA
11957 CTCCGAAA
1 C-CCGAAA
11965 CCCG--A
1 CCCGAAA
11970 CCCGAAA
1 CCCGAAA
11977 CCCGAAAA
1 CCCG-AAA
11985 TCCCGAAA
1 -CCCGAAA
11993 CCCGAAAA
1 CCCG-AAA
*
12001 CCTGAAA
1 CCCGAAA
12008 -CCGAAA
1 CCCGAAA
12014 CCCGAAA
1 CCCGAAA
12021 CCC-AAA
1 CCCGAAA
*
12027 CCCAAAA
1 CCCGAAA
*
12034 CCCCAAAA
1 -CCCGAAA
*
12042 CCTC-ATA
1 CC-CGAAA
*** * *
12049 TAAGCAC
1 CCCGAAA
*
12056 CCCAAAA
1 CCCGAAA
*
12063 CCCCAAA
1 CCCGAAA
*
12070 CCCCAAA
1 CCCGAAA
*
12077 CCC-AAC
1 CCCGAAA
*
12083 CCCCAAA
1 CCCGAAA
*
12090 CCCCTACAA
1 -CCCGA-AA
*
12099 CTCCCAAA
1 C-CCGAAA
*
12107 CCCCAACA
1 CCCGAA-A
*
12115 GCCCCACAA
1 -CCCGA-AA
12124 CCC-AAA
1 CCCGAAA
*
12130 CCACCAAATA
1 -C-CCGAA-A
*
12140 CCCAACAA
1 CCCGA-AA
*
12148 CCTCCAAA
1 CC-CGAAA
*
12156 CCCCAAA
1 CCCGAAA
*
12163 CCCCAAA
1 CCCGAAA
* *
12170 CCCCACA
1 CCCGAAA
12177 CCC-AAA
1 CCCGAAA
*
12183 CCCCAATAA
1 -CCCGA-AA
*
12192 CCCCAAA
1 CCCGAAA
*
12199 CCCCAAAA
1 -CCCGAAA
*
12207 CCCCAAAA
1 -CCCGAAA
**
12215 CCCCTAA
1 CCCGAAA
12222 CCC-AAA
1 CCCGAAA
*
12228 CCC-CAA
1 CCCGAAA
*
12234 CCCTAAAA
1 CCC-GAAA
*
12242 CCCCAAA
1 CCCGAAA
*
12249 CCCCAAA
1 CCCGAAA
*
12256 CCCCAAA
1 CCCGAAA
*
12263 CCCCAAA
1 CCCGAAA
**
12270 CCCCCCAA
1 -CCCGAAA
12278 CCCGAAA
1 CCCGAAA
12285 CCCGAAA
1 CCCGAAA
*
12292 CCAGAAA
1 CCCGAAA
12299 CCC-AAA
1 CCCGAAA
12305 CCCGAAA
1 CCCGAAA
12312 CCCGAAAA
1 CCCG-AAA
*
12320 CCCTAACA
1 CCCGAA-A
12328 CCCG-AA
1 CCCGAAA
12334 CCCGGAAA
1 CCC-GAAA
*
12342 CCCGATA
1 CCCGAAA
**
12349 --TTAAA
1 CCCGAAA
12354 CCCGAAA
1 CCCGAAA
*
12361 CCCGATA
1 CCCGAAA
*
12368 -CAG-AA
1 CCCGAAA
*
12373 CCCGATACC
1 CCCGA-A-A
*
12382 CCCCAAA
1 CCCGAAA
*
12389 CCCCAAA
1 CCCGAAA
12396 CCATC-AAA
1 CC--CGAAA
*
12404 CCCCAAA
1 CCCGAAA
* *
12411 CCCCAAC
1 CCCGAAA
* *
12418 CCCTCAAC
1 CCC-GAAA
*
12426 CCCAAAA
1 CCCGAAA
12433 CACC-AAA
1 C-CCGAAA
*
12440 CCCCAAAA
1 -CCCGAAA
*
12448 CCCTAAA
1 CCCGAAA
12455 CCC-AAA
1 CCCGAAA
*
12461 CCCTCAAA
1 CCC-GAAA
*
12469 CCCCAAAA
1 -CCCGAAA
12477 CTCC-AAA
1 C-CCGAAA
*
12484 CCCCAACA
1 CCCGAA-A
*
12492 CCCCAAA
1 CCCGAAA
12499 CCC-AAA
1 CCCGAAA
*
12505 CCCCAAA
1 CCCGAAA
*
12512 CCCCAAA
1 CCCGAAA
*
12519 CCCCAAA
1 CCCGAAA
*
12526 CCCCAAA
1 CCCGAAA
*
12533 CCCCAAAAA
1 -CCC-GAAA
*
12542 CCCCAAA
1 CCCGAAA
12549 CCTC-AAA
1 CC-CGAAA
*
12556 CCCCAAAA
1 -CCCGAAA
12564 CCC-AAA
1 CCCGAAA
*
12570 CCCCAAA
1 CCCGAAA
*
12577 CCCCCAAA
1 -CCCGAAA
12585 -CC-AAA
1 CCCGAAA
*
12590 CCCCCAATA
1 -CCCGAA-A
*
12599 CTCCCAAA
1 C-CCGAAA
12607 CCCGGAAA
1 CCC-GAAA
12615 CCCGAAA
1 CCCGAAA
*
12622 -CCTAACA
1 CCCGAA-A
**
12629 CATTG-AA
1 C-CCGAAA
**
12636 CCCCTAA
1 CCCGAAA
12643 CCCGGATACA
1 CCC-GA-A-A
12653 CCCCG--A
1 -CCCGAAA
**
12659 CCCTCAA
1 CCCGAAA
*
12666 -CCTAAA
1 CCCGAAA
12672 CCC-AAA
1 CCCGAAA
*
12678 CCCCGAAC
1 -CCCGAAA
*
12686 CCCG-AC
1 CCCGAAA
*
12692 CCCGAACT
1 CCCGAA-A
*
12700 CCCGCAACC
1 CCCG-AA-A
*
12709 CCCGAAC
1 CCCGAAA
*
12716 CCCG-AC
1 CCCGAAA
12722 CCCGAAA
1 CCCGAAA
12729 -CCGTAAATA
1 CCCG--AA-A
*
12738 CCCCAAA
1 CCCGAAA
*
12745 CCCCAAA
1 CCCGAAA
12752 -CC--AA
1 CCCGAAA
12756 CCCGTACAA
1 CCCG-A-AA
*
12765 TCCCCAAAA
1 --CCCGAAA
*
12774 CCCTCAAA
1 CCC-GAAA
*
12782 CCCCAAA
1 CCCGAAA
*
12789 CCTCCAAAA
1 -C-CCGAAA
*
12798 CCC-CAA
1 CCCGAAA
*
12804 CCCATAAA
1 CCC-GAAA
*
12812 CCCCAAA
1 CCCGAAA
*
12819 TCCC-AGA
1 -CCCGAAA
*
12826 CCCCAAA
1 CCCGAAA
12833 CCCGAAA
1 CCCGAAA
12840 CCCGGAAA
1 CCC-GAAA
12848 CCCGTAAA
1 CCCG-AAA
12856 CTCCGAAA
1 C-CCGAAA
*
12864 CCCAAAA
1 CCCGAAA
*
12871 CCCCAAA
1 CCCGAAA
**
12878 CCCCCAA
1 CCCGAAA
*
12885 CCCCAAA
1 CCCGAAA
*
12892 CAACCCAAA
1 C--CCGAAA
12901 CCCGAATA
1 CCCGAA-A
*
12909 CCCCAAAA
1 -CCCGAAA
*
12917 CCCCAAA
1 CCCGAAA
12924 CCC-AAA
1 CCCGAAA
*
12930 CCC-CAA
1 CCCGAAA
*
12936 CCCCAAA
1 CCCGAAA
*
12943 CTCCTCCAAA
1 --CC-CGAAA
12953 CCC-AAA
1 CCCGAAA
*
12959 CCCCAAA
1 CCCGAAA
*
12966 CCCCAAA
1 CCCGAAA
*
12973 CCCCAAA
1 CCCGAAA
*
12980 CCCCAAA
1 CCCGAAA
*
12987 CCCCAAA
1 CCCGAAA
*
12994 CCCCTAAATA
1 -CCC-GAA-A
*
13004 CCCCTAAA
1 -CCCGAAA
*
13012 CCCCTTAAA
1 -CCC-GAAA
*
13021 CCCCAAA
1 CCCGAAA
*
13028 CCC-CAA
1 CCCGAAA
13034 CCC--AA
1 CCCGAAA
13039 CCC-AAA
1 CCCGAAA
*
13045 CCCCAAA
1 CCCGAAA
*
13052 CCCCAAAA
1 -CCCGAAA
*
13060 TCCCCAAA
1 -CCCGAAA
*
13068 CCCCAATA
1 CCCGAA-A
13076 CCCGAAA
1 CCCGAAA
*
13083 CCCCAAA
1 CCCGAAA
*
13090 CCCCAAA
1 CCCGAAA
*
13097 CCAACCAAA
1 CC--CGAAA
*
13106 CCCCAAA
1 CCCGAAA
13113 CCC-AAA
1 CCCGAAA
13119 CCCGAAA
1 CCCGAAA
13126 -CCGAAA
1 CCCGAAA
13132 CCCAGAAA
1 CCC-GAAA
13140 CCCGAAA
1 CCCGAAA
13147 -CCGAAA
1 CCCGAAA
13153 CCCG-AA
1 CCCGAAA
*
13159 -CCTAAA
1 CCCGAAA
13165 CCCGAAA
1 CCCGAAA
13172 -CCGAAA
1 CCCGAAA
13178 CCCGAAAA
1 CCCG-AAA
*
13186 CCCTAAAA
1 CCC-GAAA
13194 CCCG-AA
1 CCCGAAA
13200 CCCGAAA
1 CCCGAAA
13207 CCCTGAAA
1 CCC-GAAA
*
13215 CCCCTAAA
1 -CCCGAAA
*
13223 CCCCAAA
1 CCCGAAA
*
13230 CCC-AACC
1 CCCGAA-A
*
13237 CCCAAAA
1 CCCGAAA
*
13244 CCC-AAC
1 CCCGAAA
*
13250 CCCAAAA
1 CCCGAAA
13257 CCCTGAAA
1 CCC-GAAA
13265 CCCTGAATA
1 CCC-GAA-A
*
13274 CCCTCAAA
1 CCC-GAAA
*
13282 CCCAACTAAA
1 -CC--CGAAA
13292 CCCG-AA
1 CCCGAAA
**
13298 CCTAAAA
1 CCCGAAA
*
13305 CCCTAAA
1 CCCGAAA
* *
13312 CCCCTATA
1 -CCCGAAA
13320 CCCGAAA
1 CCCGAAA
13327 CCTC--AA
1 CC-CGAAA
13333 CCCTGAAA
1 CCC-GAAA
*
13341 CCC-TAA
1 CCCGAAA
*
13347 CCCTAAA
1 CCCGAAA
*
13354 CCCCG-AC
1 -CCCGAAA
*
13361 CCCGAACC
1 CCCGAA-A
**
13369 CGCCGACC
1 C-CCGAAA
13377 CCCGAAA
1 CCCGAAA
13384 CCCCG-AA
1 -CCCGAAA
*
13391 CCCGAGA
1 CCCGAAA
**
13398 CCC-CTA
1 CCCGAAA
*
13404 CGCGAAA
1 CCCGAAA
*
13411 ACC-AAA
1 CCCGAAA
13417 CCC-AAA
1 CCCGAAA
*
13423 CCCCAAA
1 CCCGAAA
13430 CCC-AAA
1 CCCGAAA
*
13436 CCCCCAAA
1 -CCCGAAA
*
13444 CCCCAAA
1 CCCGAAA
*
13451 CCCCAAA
1 CCCGAAA
*
13458 CCCCAAA
1 CCCGAAA
*
13465 CCC-CAA
1 CCCGAAA
13471 -CC-ATAA
1 CCCGA-AA
*
13477 CCCCAAA
1 CCCGAAA
*
13484 CCCCAATA
1 CCCGAA-A
13492 CCC-AAA
1 CCCGAAA
*
13498 CCCCAAA
1 CCCGAAA
**
13505 CCCTCAA
1 CCCGAAA
* *
13512 CCCTAGGA
1 CCCGA-AA
*
13520 CCC-AGA
1 CCCGAAA
*
13526 CCCTAAA
1 CCCGAAA
*
13533 CCCTAAA
1 CCCGAAA
*
13540 CCCCAAA
1 CCCGAAA
*
13547 CCCCAAA
1 CCCGAAA
*
13554 CCCCAAA
1 CCCGAAA
*
13561 CCC-CAA
1 CCCGAAA
13567 CCC-AAA
1 CCCGAAA
*
13573 CCCCAAA
1 CCCGAAA
13580 CTCC-AAA
1 C-CCGAAA
*
13587 CCCCAAA
1 CCCGAAA
*
13594 CCCCAAA
1 CCCGAAA
13601 CCC--AA
1 CCCGAAA
*
13606 CCCCAAA
1 CCCGAAA
*
13613 CCCTAAA
1 CCCGAAA
13620 CCC--AA
1 CCCGAAA
*
13625 CCCCAAA
1 CCCGAAA
*
13632 CCCCAAA
1 CCCGAAA
*
13639 CCCCAAA
1 CCCGAAA
*
13646 CCCCAAA
1 CCCGAAA
*
13653 CCCCAAA
1 CCCGAAA
*
13660 CCCCAAA
1 CCCGAAA
*
13667 CCC-CAA
1 CCCGAAA
*
13673 CCCTAAA
1 CCCGAAA
*
13680 CCCCAAA
1 CCCGAAA
*
13687 CCCTAAA
1 CCCGAAA
*
13694 CCCTAAA
1 CCCGAAA
*
13701 CCCTAAA
1 CCCGAAA
*
13708 CCCTAAA
1 CCCGAAA
*
13715 CCCCGAAC
1 -CCCGAAA
*
13723 CCCGAAC
1 CCCGAAA
*
13730 CCCGAAC
1 CCCGAAA
*
13737 CCCGAAC
1 CCCGAAA
*
13744 CCCGAAC
1 CCCGAAA
*
13751 CCCGAAC
1 CCCGAAA
*
13758 CCCGAAC
1 CCCGAAA
13765 CCCG-AA
1 CCCGAAA
*
13771 CCTCGAAC
1 CC-CGAAA
*
13779 CCCGAAC
1 CCCGAAA
*
13786 CCCGAAC
1 CCCGAAA
*
13793 CCCGAAC
1 CCCGAAA
13800 CCCG-AA
1 CCCGAAA
*
13806 CCCCAAA
1 CCCGAAA
*
13813 CCCCAAA
1 CCCGAAA
*
13820 CTCCTAAA
1 C-CCGAAA
13828 CTCC-AAA
1 C-CCGAAA
**
13835 CCCTTAA
1 CCCGAAA
*
13842 CCCCAAA
1 CCCGAAA
13849 CCTC-AAA
1 CC-CGAAA
*
13856 CCCTAAA
1 CCCGAAA
*
13863 CCCCAAA
1 CCCGAAA
*
13870 CCCTAAA
1 CCCGAAA
**
13877 CCTTAAA
1 CCCGAAA
*
13884 CCCTAAA
1 CCCGAAA
*
13891 CCCCAAA
1 CCCGAAA
*
13898 CCCTAAA
1 CCCGAAA
*
13905 CCCTAAA
1 CCCGAAA
* *
13912 CTCTAAA
1 CCCGAAA
*
13919 CCCTAAA
1 CCCGAAA
*
13926 CCCTAAA
1 CCCGAAA
13933 CCC-AAA
1 CCCGAAA
*
13939 CCTCGAAC
1 CC-CGAAA
13947 CCCG-AA
1 CCCGAAA
*
13953 CCCATGAAC
1 CCC--GAAA
13962 CCCTG-AA
1 CCC-GAAA
13969 CCCTG-AA
1 CCC-GAAA
13976 CCCGAAA
1 CCCGAAA
*
13983 CCCGTAA
1 CCCGAAA
13990 CCC-AAA
1 CCCGAAA
**
13996 CCCTTAA
1 CCCGAAA
**
14003 CCCCTAA
1 CCCGAAA
*
14010 CTCCTAAA
1 C-CCGAAA
*
14018 CCCTAAA
1 CCCGAAA
* *
14025 CTCGATA
1 CCCGAAA
14032 CCCGAAA
1 CCCGAAA
14039 CCCGAAA
1 CCCGAAA
*
14046 CCTCGAAC
1 CC-CGAAA
14054 CCCG-AA
1 CCCGAAA
*
14060 CCCCAAA
1 CCCGAAA
14067 CCTC-AAA
1 CC-CGAAA
14074 CCTCG-AA
1 CC-CGAAA
*
14081 CCCCAAA
1 CCCGAAA
***
14088 TTTGAAA
1 CCCGAAA
*
14095 CCCTAAA
1 CCCGAAA
**
14102 CCTAAAA
1 CCCGAAA
*
14109 CCCAAAA
1 CCCGAAA
**
14116 CCTAAAA
1 CCCGAAA
14123 CTCC-AAA
1 C-CCGAAA
14130 CTCC-AAA
1 C-CCGAAA
*
14137 CCCCAAA
1 CCCGAAA
* *
14144 TCCTAAA
1 CCCGAAA
*
14151 CCCTAAA
1 CCCGAAA
*
14158 CCCTAAA
1 CCCGAAA
*
14165 CCCCTAAA
1 -CCCGAAA
*
14173 CCCCAAA
1 CCCGAAA
*
14180 CCCCGAAC
1 -CCCGAAA
14188 CCCG-AA
1 CCCGAAA
14194 CCCGAA
1 CCCGAA
14200 CCTCGACCCC
Statistics
Matches: 11420, Mismatches: 1028, Indels: 3058
0.74 0.07 0.20
Matches are distributed among these distances:
4 24 0.00
5 193 0.02
6 1430 0.13
7 5111 0.45
8 2996 0.26
9 1150 0.10
10 375 0.03
11 106 0.01
12 20 0.00
13 14 0.00
14 1 0.00
ACGTcount: A:0.40, C:0.42, G:0.13, T:0.05
Consensus pattern (7 bp):
CCCGAAA
Found at i:382 original size:23 final size:23
Alignment explanation
Indices: 218--298 Score: 57
Period size: 22 Copynumber: 3.6 Consensus size: 23
208 CGATAACTCC
218 CGAAACCCGAAACCCGAAACCCGA
1 CGAAACCCGAAACCCG-AACCCGA
* *
242 --AATCCCGAAAACCGAAACCC-A
1 CGAAACCCGAAACCCG-AACCCGA
263 --AAACCCGAAACCCGGAAACCCGA
1 CGAAACCCGAAACCC-G-AACCCGA
*
286 -GAATCCCGAAACC
1 CGAAACCCGAAACC
299 AGAAACCTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
21 12 0.24
22 25 0.51
23 1 0.02
24 11 0.22
ACGTcount: A:0.43, C:0.40, G:0.15, T:0.02
Consensus pattern (23 bp):
CGAAACCCGAAACCCGAACCCGA
Found at i:394 original size:32 final size:30
Alignment explanation
Indices: 187--12027 Score: 1539
Period size: 29 Copynumber: 390.8 Consensus size: 30
177 GTCCAAGCTC
*
187 GAAACCCGAAACCCGCGATA-CCGATAACTCCC-
1 GAAACCCGAAA-CC-CGA-ACCCGA-AACACCCG
*
219 GAAACCCGAAACCCGAAACCCGAAA-TCCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
248 GAAAACCGAAACCCAAAACCCG-AA-ACCCG
1 GAAACCCGAAACCC-GAACCCGAAACACCCG
*
277 GAAACCCGAGAATCCCGAAACCAGAAACCTAACCC-
1 GAAACCCGA-AA-CCCG-AACCCGAAA-C--ACCCG
* *
312 GAAACACGAAACTCGAAACCCG-AA-ACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
341 ACGAAACCCGAAACCCGAACCCGCAATACCCG
1 --GAAACCCGAAACCCGAACCCGAAACACCCG
* *
373 GAAACCCGAAATCCGGCAACCCGAAACCCCCG
1 GAAACCCGAAA-CCCG-AACCCGAAACACCCG
405 GAAACCCGAATACCCGAAACCCG-AA-A-CC-
1 GAAACCCGAA-ACCCG-AACCCGAAACACCCG
*
433 GAAATCCC-AAACTCCTGAACCCTTGAAAC-TCC-
1 GAAA-CCCGAAAC-CC-GAACCC--GAAACACCCG
* * * * ** *
465 G-AATCAGAAAACCG-A--GGAAA-GTCCT
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* *
490 GAAACCCGATTATCCTGAAACCCG-AACACCC-
1 GAAACCCGA--AACCCG-AACCCGAAACACCCG
* *
521 GAAACCTGAAA-CCGAAACCCGGAA-ACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
550 GAATA-CCGTAAACCCGAAACCCGAACAGAAACCG
1 GAA-ACCCG-AAACCCG-AACCCGAA-A-CACCCG
* * *
584 AAAACTCGAAA-CCGAACCCG-AA-ACCCT
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* *
611 GAACCCCG-AACCCGAAACCCGTAAAC-TCC-
1 GAAACCCGAAACCCG-AACCCG-AAACACCCG
*
640 GAAACCCG-AACCAGAAACCCG-AA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
667 TAAAACCGAAACCCGCAACCCG-AA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* * * *
695 GACACCGCGAACCCCGGGAAACCGGAA-ACCCG
1 GAAACC-CGAAACCC--GAACCCGAAACACCCG
*
727 TAAACCCGAAACCCGAACCCG-AA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
754 GAAACCCGAAACCCGGAAACCCG-AA-ACCC-
1 GAAACCCGAAACCC-G-AACCCGAAACACCCG
*
783 GAAACCCGAAAACCCGAAACCG---CACCCG
1 GAAACCCG-AAACCCGAACCCGAAACACCCG
* **
811 AAAACCC-ATAACCCGAAAGCCCG-AAGTCCC-
1 GAAACCCGA-AACCCG-AA-CCCGAAACACCCG
841 G-AACCCG-AACTCCTGTAAAACTCCG-AA-ACCC-
1 GAAACCCGAAAC-CC-G---AAC-CCGAAACACCCG
* * *
872 GAAA-CCGAAACCGGGAAACCCTCG-AATA-CTG
1 GAAACCCGAAACC-CG-AA-CC-CGAAACACCCG
* *
903 GAAACCCCGACACTCGAAAGCCCGAAACA--CG
1 GAAA-CCCGAAACCCG-AA-CCCGAAACACCCG
* * *
934 AAAACCCGAAAACCCGAAACCGGAAC-CCC-
1 GAAACCCG-AAACCCGAACCCGAAACACCCG
963 GAAACCCGGAAACCCGAAACCCG-AA-ACCC-
1 GAAACCC-GAAACCCG-AACCCGAAACACCCG
*
992 GAAACCTCGGAAACCCGAACCCCG-AA-ACCAG
1 GAAACC-C-GAAACCCGAA-CCCGAAACACCCG
*
1023 CAAACCCCCGAAA-CCGAAACTCCGAAAC-CCTC-
1 GAAA--CCCGAAACCCG-AAC-CCGAAACACC-CG
*
1055 --AACCCGAATAGCCCGAAACCG-AA-ACCC-
1 GAAACCCGAA-A-CCCGAACCCGAAACACCCG
1082 GAAACCCGAAACCCTGAA-CCG--A-ACCC-
1 GAAACCCGAAACCC-GAACCCGAAACACCCG
*
1108 GAAACAC-AAACTCCGATA----AAA-ACCC-
1 GAAACCCGAAAC-CCGA-ACCCGAAACACCCG
*
1133 GAAACCCGAACCCCTGAA-CCG-AA-ACCC-
1 GAAACCCGAAACCC-GAACCCGAAACACCCG
*
1160 GTAACCCG-AACCCGACACCCGACAA-A-CC-
1 GAAACCCGAAACCCGA-ACCCGA-AACACCCG
1188 GAAA-CCGAAACCCGGAAATCACCCG-AA-A--CG
1 GAAACCCGAAACCC-G--A--ACCCGAAACACCCG
*
1218 AGAAACCCGAAACCCGAAAACCGAAA-ACCC-
1 -GAAACCCGAAACCCG-AACCCGAAACACCCG
*
1248 --AACCCTGAAACCCGAACCCGAAAC-CCCC
1 GAAACCC-GAAACCCGAACCCGAAACACCCG
* * * *
1276 GCACCCCGAAACCCGCAAACCCG-CATACCC-
1 GAAACCCGAAACCCG--AACCCGAAACACCCG
*
1306 GAAACCCGAAACCCGAAACCGAAA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* * *
1334 GCAA-CCGAAAACCCGAAAACCTGTAAAAACCC-
1 GAAACCCG-AAACCCG--AACCCG-AAACACCCG
* *
1366 GAAACCCG-AACCCGCAAATCCG-ATCAACCCG
1 GAAACCCGAAACCCG--AACCCGAAAC-ACCCG
* *
1397 GAAACCGGAAACCCGAAACTCGAAACCGAATACCCTG
1 GAAACCCGAAACCCG-AACCCGAAA-C----ACCC-G
1434 GAAACCCGAAA-CCGAGA-CCGAAA-ACCC-
1 GAAACCCGAAACCCGA-ACCCGAAACACCCG
* *
1461 GCAACCCGAAACCCGAAACCG-AA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
*
1488 GAAACCCGGAA----AACCCGGAAA-ACCCG
1 GAAACCCGAAACCCGAACCC-GAAACACCCG
* *
1514 CACGAACCCGAAACCCGAACCCGTAA-ACCC-
1 GA--AACCCGAAACCCGAACCCGAAACACCCG
1544 GAAA-CCGAAACCCGGGAAAACCCG--A-ACCC-
1 GAAACCCGAAACCC--G--AACCCGAAACACCCG
1573 GAAACCCGAAACCCGAAACCCG-AA-ACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
1602 GAAACCCGAACCACCCGAACATCCCGAGATACCCG
1 GAAACCCGAA--ACCCG-A-A-CCCGAAACACCCG
* * *
1637 GAAA-CCGAAATTCCGAAACTCC-ACA-ACCCA
1 GAAACCCGAAA-CCCG-AAC-CCGAAACACCCG
1667 GAATA----ATAACCCGAACCCG-AA-ACCC-
1 GAA-ACCCGA-AACCCGAACCCGAAACACCCG
* *
1692 GAATACCCGAAAACTCAAACCCG-AA-ACCC-
1 GAA-ACCCG-AAACCCGAACCCGAAACACCCG
*
1721 GAAACCCGAAACCCGAATACCCGATA-ACCC-
1 GAAACCCGAAACCCG-A-ACCCGAAACACCCG
1751 GAAACCCGAAA-CCGATACCCG-AA-ACCC-
1 GAAACCCGAAACCCGA-ACCCGAAACACCCG
* * *
1778 GCAACCCGAATCCCGAAACCCGAAAAACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
1809 GAAACCCGGAAACCTCGAAACCCCG-AA-ACCCG
1 GAAACCC-GAAACC-CG-AA-CCCGAAACACCCG
* *
1841 TAAACCCGAAACCCGCAA-CCG--AGACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
1868 GAAA-CCG-AACCGGGAAACCCGTAACACCC-
1 GAAACCCGAAACC-CG-AACCCGAAACACCCG
*
1897 GAAACTTCCGATAA-CCGAAACCCGTAA-ACCC-
1 GAAAC--CCGA-AACCCG-AACCCGAAACACCCG
*
1928 GATAAGCCCTGAAACCCGAAACCCGAAATATCCCG
1 GA-AA-CCC-GAAACCCG-AACCCGAAACA-CCCG
* *** *
1963 GCAACCCGAATATATG--CCGCATAAACA-CCG
1 GAAACCCGAA-ACCCGAACC-C-GAAACACCCG
* *
1993 CAAATCCGAAAACCCGGGAAACCCG-AA-ACCCG
1 GAAACCCG-AAACCC--G-AACCCGAAACACCCG
*
2025 TAAACCCGACAA-CCGAAACCCG-AA-ACCC-
1 GAAACCCGA-AACCCG-AACCCGAAACACCCG
2053 GAAACCCGAAACCCGAAACCCCGATAAC-CCGCG
1 GAAACCCGAAACCCG-AA-CCCGA-AACACC-CG
*
2086 AAAACCCGAAACCCGAAAACCCG-AA-ACCC-
1 GAAACCCGAAACCCG--AACCCGAAACACCCG
2115 GAAACCCGATAA-CCGAACCCCG-AA-ACCC-
1 GAAACCCGA-AACCCGAA-CCCGAAACACCCG
* * *
2143 GACACCCTAAAAACCCGCAAACCG-AA-ACCC-
1 GAAACCC--GAAACCCG-AACCCGAAACACCCG
2173 GAAACCCGAAACCTCGAAACCCG-AA-A--C-
1 GAAACCCGAAACC-CG-AACCCGAAACACCCG
*
2200 GATAACCCGAAACCCTGAAACCCGAAATTACCC-
1 GA-AACCCGAAACCC-G-AACCCGAAA-CACCCG
*
2233 GAAACCCTCGATAA----AACGCGAAAC-CCC-
1 GAAA-CC-CGA-AACCCGAACCCGAAACACCCG
2260 GAAACCCGAAACCCGAAACCCG--A-ACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
2288 GAAAACCGAAAACACCGAACTCCG-AA-ACCC-
1 GAAACCCG-AAAC-CCGAAC-CCGAAACACCCG
2318 GAAACCCGAAACCCGAAACCCG-AA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
2346 GAAACCCGACCGACACCCGACACCTCGGAA-A-CC-
1 GAAACCCGA---A-ACCCGA-ACC-CGAAACACCCG
* *
2379 GAAACCCGAAACCCGAAACCCTAAAC-CTCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* **
2409 GAAACCCGACTAACCCGAAACCG-AACTTCC-
1 GAAACCCGA--AACCCGAACCCGAAACACCCG
*
2439 GAACCCCGAAACCCTGAAACCCCG--A-ACCCG
1 GAAACCCGAAACCC-G-AA-CCCGAAACACCCG
*
2469 GAAACCCGAGAAACCCTGAAAAACCCTAAAC-CCC-
1 GAAACCC--GAAACCC-G---AACCCGAAACACCCG
*
2503 GATTAACCCGAAATCCTCGAAAAACCTC-AAAC-TCC-
1 GA--AACCCGAAA-CC-CG---AACC-CGAAACACCCG
* *
2538 G-AACCCGAAACCCG-ACACGATA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
*
2564 GAAACCCGAAAACCCGCAACCCGAAA-TCCCG
1 GAAACCCG-AAACCCG-AACCCGAAACACCCG
* *
2595 GAAACCCGAATAATCCCGAAAAACCG--ACAACC-
1 GAAACCCG-A-AA-CCCG--AACCCGAAACACCCG
2627 GAAACCCTGAAACCCGCAACCCCGCAGAA-A-CC-
1 GAAACCC-GAAACCCG-AA-CCCG-A-AACACCCG
*
2659 GAAACCGCGAAACCCTCAACCCG-AA-ACCC-
1 GAAACC-CGAAACCC-GAACCCGAAACACCCG
*
2688 GATAACTCCGAATATCCCGAAACTCCGTAACCGGAAACCC-
1 GA-AAC-CCGAA-A-CCCG-AAC-CCG-AA----ACACCCG
* * * *
2728 GAAACCCGAAACCCTGAACCAGATTATACCCC
1 GAAACCCGAAACCC-GAACCCGA-AACACCCG
*
2760 GAAACCCGAAACCCGAACCCGAAAAACCCG
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* * *
2790 GAAA-CCGAAACACGAACCCCGAAACCCGCAACC
1 GAAACCCGAAACCCGAA-CCCGAAACAC-C--CG
2823 GAAACTCCGAAACCCGAACCCTG-AA-ACCC-
1 GAAAC-CCGAAACCCGAACCC-GAAACACCCG
* * *
2852 G-AACCCGAAACCCGAA-ACGCAAC-TCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* *
2878 GAAACCCGAAACACGCAACTCG-AA-A----
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
2903 -AAACCTCGAAACCCGAAACCGTAA-ACCCG
1 GAAACC-CGAAACCCGAACCCGAAACACCCG
*
2932 G-AACCCGAAACCCGACAACCTCGAAA-AACC-
1 GAAACCCGAAACCCG--AACC-CGAAACACCCG
** * *
2962 GCTACCCGAAACCCGAATACTCCG-AA-ACTCA
1 GAAACCCGAAACCCG-A-AC-CCGAAACACCCG
2993 GATAACCCGTAAACCCGAAACTCCGAAA-ACCC-
1 GA-AACCCG-AAACCCG-AAC-CCGAAACACCCG
* **
3025 G-AACCCGTACAACGC-AA-CCGGCA-ACCC-
1 GAAACCCG-A-AACCCGAACCCGAAACACCCG
3052 GAAACCCGGAAGACCCGAAAACCCGAAA-ACCCG
1 GAAACCC-GAA-ACCCG--AACCCGAAACACCCG
* * * *
3085 AAAACCTGAAACCCG--CCTGTAA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* *
3111 GAAAACCGAAAACCGAACCCG-AA-A-CC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
*
3137 GAAACCCGAATACCCGAAACCCGAAACCGAACCCC
1 GAAACCCGAA-ACCCG-AACCCGAAA-C--ACCCG
3172 GATAACCCCGAAACCCGAAACCCG--A-ACCC-
1 GA-AA-CCCGAAACCCG-AACCCGAAACACCCG
* * *
3201 GAAAACAGAAACCCGAAACCCGAAA-ACCCCT
1 GAAACCCGAAACCCG-AACCCGAAACA-CCCG
*
3232 GAAACCCGAAACCCGTAAACCCGAAACCGAAACCCT
1 GAAACCCGAAACCCG--AACCCGAAA-C---ACCCG
3268 G-AACCCGAAAAACCGCGAACCCCGAAAC-CTCC-
1 GAAACCCG--AAACC-CGAA-CCCGAAACAC-CCG
** *
3300 GAAACCCGAAACCAAAACCCG--ACAACCG
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* *
3328 AAAACCCTGAAA-CCGCAACCCGGAAAC-TCC-
1 GAAACCC-GAAACCCG-AACCC-GAAACACCCG
*
3358 GAATACCCG-AACCCGTTAAAACCCG---CAACCG
1 GAA-ACCCGAAACCCG----AACCCGAAACACCCG
*
3389 GAAACACGAAACCCGAAACCCG-AACAGCCTC-
1 GAAACCCGAAACCCG-AACCCGAAACA-CC-CG
*
3420 GACATCCCGAAACCCGAACCCGAAA-ACCC-
1 GA-AACCCGAAACCCGAACCCGAAACACCCG
*
3449 GAAACCC-AAACCCCGAAACCG--A-ACCCG
1 GAAACCCGAAA-CCCGAACCCGAAACACCCG
3476 GAAACCCGAAA-CCGAAACCC--AA-A-CCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
3502 TAAACCCGAAAACCCGAACCTCGAAA-ACCCT
1 GAAACCCG-AAACCCGAACC-CGAAACACCCG
3533 GAAA-CCGAAACCCGAACACCCG-AA-ACCC-
1 GAAACCCGAAACCCG-A-ACCCGAAACACCCG
* * *
3561 GAAACCCG-AACCCTGAATAGCCGGAAC-CCCT
1 GAAACCCGAAACCC-G-A-ACCCGAAACACCCG
* *
3592 GAACACCAGAAACCCAATATCCCG-AA-ACCC-
1 GAA-ACCCGAAACCCGA-A-CCCGAAACACCCG
*
3622 GAAA-CCGATAACCAGATAACCCGAATAC-CCC-
1 GAAACCCGA-AACCCG--AACCCGAA-ACACCCG
* *
3653 GACACCCGAAA-CCGAACCCG--GCACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
3679 GAAACCCGGAAAACCCGCGAAAACCCG-AA-ACCCG
1 GAAACCC-G-AAA-CC-CG--AACCCGAAACACCCG
* *
3713 GCATACCCGGAAACCGGAAACCCGTAAA-A-CC-
1 G-AAACCC-GAAACCCG-AACCCG-AAACACCCG
3744 GAAACCCGAAACTCTCGAAACCCGAATACCCGAAACCCG
1 GAAACCCGAAAC-C-CG-AACCCGAA-A--C---ACCCG
3783 TGAAAACCCGAAAACCCGAACCCG--A-ACCCG
1 -G-AAACCCG-AAACCCGAACCCGAAACACCCG
* * *
3813 AAAAACCCCGTAACCCGATATACCCG-GA-ACCC-
1 -GAAA-CCCGAAACCCG--A-ACCCGAAACACCCG
*
3845 GAAACCCGACAACCCGAAACCCG-GA-ACCCG
1 GAAACCCGA-AACCCG-AACCCGAAACACCCG
*
3875 GAAAAGCCGAAACCCGTACACCCG-AACACCC-
1 G-AAACCCGAAACCCG-A-ACCCGAAACACCCG
* *
3906 GACACCCGAAACCCGAAACCC--AAC-CCCT
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
3934 GAAACCCGAAAAACCCAAACCCG--A-ACCC-
1 GAAACCCG--AAACCCGAACCCGAAACACCCG
*
3962 GAAACCCGCAACCCGAA----AAA-ACCTC-
1 GAAACCCGAAACCCGAACCCGAAACACC-CG
*
3987 GAAACCCGAAACCCGAACCTCG-GA-ACCC-
1 GAAACCCGAAACCCGAACC-CGAAACACCCG
* *
4015 GATCAAACCTAAACCCGAA-CCGAAA-ACCC-
1 GA--AACCCGAAACCCGAACCCGAAACACCCG
4044 GAAATCCCGAAAACCCGAAACCCGAAA-A-CC-
1 GAAA-CCCG-AAACCCG-AACCCGAAACACCCG
* *
4074 TAAACCCGAAACCCGGAACCCGGAAC-CCC-
1 GAAACCCGAAACCC-GAACCCGAAACACCCG
* * *
4103 -AAAACCGAAACCCGAACCGCCGAAACCGATAACCT
1 GAAACCCGAAACCCGAA-C-CCGAAA-C---ACCCG
4138 GAAACCCGAAACTCCGAAACCCG-AA-ACCC-
1 GAAACCCGAAAC-CCG-AACCCGAAACACCCG
*
4167 GAAACCTCGAAACCCGAAACCCCGCTAA-ACCCGG
1 GAAACC-CGAAACCCG-AA-CCCG-AAACACCC-G
* *
4201 TGAAACCCCGAAAACCCTGAAAATCCGAAA-ACCCT
1 -GAAA-CCCG-AAACCC-G--AACCCGAAACACCCG
* *
4236 GAAACCCCGAAACACCGAAACCGGAA-ACCC-
1 GAAA-CCCGAAAC-CCGAACCCGAAACACCCG
*
4266 GAAACCCGCAA-CCGAAACCCGAAA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* * *
4294 GAAACCCGAAAGCCGATAACCGAGAAC-CTC-
1 GAAACCCGAAACCCGA-ACCCGA-AACACCCG
*
4324 GAAATCCCGAAA-ACGAAACCCG-AA-ACCCG
1 GAAA-CCCGAAACCCG-AACCCGAAACACCCG
* *
4353 AAAACCTCGAAACCCG-ACCCG---CAACC-
1 GAAACC-CGAAACCCGAACCCGAAACACCCG
*
4379 GAAACCCGAAACCCGAAACCCGTAA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
4408 GAAACTCCG-AACCCGAAACCCG-AA-ACCCG
1 GAAAC-CCGAAACCCG-AACCCGAAACACCCG
* ** **
4437 CAAACCCGAAA----ATGCCGAATTACCCG
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* ** *
4463 TATAACCCTCAACCCGTAAACCCG-AA-AGCC-
1 GA-AACCCGAAACCCG--AACCCGAAACACCCG
* *
4493 GAAACGCGAAACTCCGCACCCG-AA-ACCCG
1 GAAACCCGAAAC-CCGAACCCGAAACACCCG
* * * *
4522 CAAACCCGAAACCCGTTA----AAACGCTCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* * *
4549 TGCAACCCGAATACTCGAAACCG-AA-A-CC-
1 -GAAACCCGAA-ACCCGAACCCGAAACACCCG
4577 GAAACCCG-AACCCGGAACCCCGAAAC-CCC-
1 GAAACCCGAAACCC-GAA-CCCGAAACACCCG
* *
4606 GAAACCCCTAAGACCTGAAACCCG--A-ACCC-
1 GAAA-CCCGAA-ACCCG-AACCCGAAACACCCG
4635 GAAACCCGAAAACCCGAACCCGAAAC-CCC-
1 GAAACCCG-AAACCCGAACCCGAAACACCCG
4664 GAAACCCGAAACCCCGATAAACCCG-AA-ACCCG
1 GAAACCCGAAA-CCCG---AACCCGAAACACCCG
** *
4696 CCAACCCGAATACCCGAACAACCGAACGAAAACCC-
1 GAAACCCGAA-ACCCGAAC--CCG-A--AACACCCG
* * * *
4731 GCAACCCGTAACCCGAAACCCGCAATA-CCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
4761 AAAACCCGTAAACCCGTAAACCCGAAACCGCCCG
1 GAAACCCG-AAACCCG--AACCCGAAA-CACCCG
* *
4795 AAAAACCG-AACCCGTGAAACCCGACGAA-ACCCG
1 GAAACCCGAAACCC--G-AACCCGA--AACACCCG
* **
4828 GAAATCCTGAATACCCGAATACGAAA-ACCC-
1 GAAA-CCCGAA-ACCCGAACCCGAAACACCCG
* * *
4858 GAAACCCGAAATCC-TACAACGAAA-ACCTC-
1 GAAACCCGAAACCCGAAC-CCGAAACACC-CG
*
4887 GAAA-CCGAAATCCCTAAACCCG-AA-ACCC-
1 GAAACCCGAAA-CCC-GAACCCGAAACACCCG
* *
4915 GAAACCCGGAAACCGCGATAACCGAAACA-CTG
1 GAAACCC-GAAACC-CGA-ACCCGAAACACCCG
* *
4947 TCACAACCCGAAACCCAGCGGTAAACCCGACAATC-CTC-
1 -GA-AACCCGAAA-CC--C-G--AACCCGA-AA-CACCCG
4985 GAAACCCGAAACCCGAACCCGATAA-ACCC-
1 GAAACCCGAAACCCGAACCCGA-AACACCCG
*
5014 GAAACCCGAAATCCCTCAACCCG-AA-ACCC-
1 GAAACCCGAAA-CCC-GAACCCGAAACACCCG
* *
5043 GACACCCGAAACGAACCCGAACCCG-AA-ACCCT
1 GAAACCCG--A--AACCCGAACCCGAAACACCCG
5075 GAAACCCCGAAACCCTG-ACCC-AAA-ACCC-
1 GAAA-CCCGAAACCC-GAACCCGAAACACCCG
* * **
5103 GAAACCCGAAACCCAAACTCCGTAA-ACCTT
1 GAAACCCGAAACCCGAAC-CCGAAACACCCG
*
5133 GAAACCCGAAAACCCGGAAACCCGAGGA-ACCC-
1 GAAACCCG-AAACCC-G-AACCCGA-AACACCCG
* *
5165 GAATCCCCGACTACCCTGAAACCCG--A-ACCC-
1 GAA-ACCCGA-AACCC-G-AACCCGAAACACCCG
* * *
5195 GAACCCCCGAACCCCCGAAACCCGAAATACCCG
1 GAA-ACCCGAA-ACCCG-AACCCGAAACACCCG
*
5228 GGAACCCGAAACCCCGGAAACTCCGAATA-ACCCTG
1 GAAACCCGAAA-CCC-G-AAC-CCGAA-ACACCC-G
* * *
5263 GAAACACCTGCTACCCCGAAACTC-AGAA-A-CC-
1 GAAAC-CC-G-AAACCCG-AACCCGA-AACACCCG
5294 GAACACCTCGAAACCCTGAA-CCG-AA-ACCCG
1 GAA-ACC-CGAAACCC-GAACCCGAAACACCCG
5324 GAAACCCTGAATA-CCGTAAAACCTCG-AA-ACCC-
1 GAAACCC-GAA-ACCCG---AACC-CGAAACACCCG
* *
5356 GAAACCCGAAA-GCAAACCCGAAA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
***
5383 GAAACCCGTACAACCCGAAACCCGAAATC-CTAT
1 GAAACCCG-A-AACCCG-AACCCGAAA-CACCCG
*
5416 GAAACCCGAAACCGGAAACACCAGAATA-ACCCGG
1 GAAACCCGAAACCCG-AAC-CC-GAA-ACACCC-G
5450 GAAACCCG-AA-CCGAAACCCG-AA-A-CC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* * *
5475 GAAACACGAAACCCGACCCCCGAAAC-CTC-
1 GAAACCCGAAACCCGA-ACCCGAAACACCCG
5504 GAAACCCGAATACCCGAAACCCCG-AA-ACCC-
1 GAAACCCGAA-ACCCG-AA-CCCGAAACACCCG
5534 GAAACCCGAAACCCGAACCCCG-AA-ACCC-
1 GAAACCCGAAACCCGAA-CCCGAAACACCCG
*
5562 GAAACCCGCAACCCGAGAACCCG-AA-ACCC-
1 GAAACCCGAAACCC--GAACCCGAAACACCCG
*
5591 G-AACCCGGAACATCC-AACCCGAAA-A-CC-
1 GAAACCC-GAA-ACCCGAACCCGAAACACCCG
5618 GAAACCCGAATACCCGAAAACCC-AAA-A-CCG
1 GAAACCCGAA-ACCCG--AACCCGAAACACCCG
5648 CGAAATCCCTCGAAACCCGAAACCCGAAAC-CCC-
1 -GAAA--CC-CGAAACCCG-AACCCGAAACACCCG
* * *
5681 GAAAACCG-AACCTCGGAAACCGAAACCGACACCCT
1 GAAACCCGAAACC-C-GAACCCG-AA---ACACCCG
5716 GAAACCCCGAAACCCGATATACCCGAAA-A-CC-
1 GAAA-CCCGAAACCCG--A-ACCCGAAACACCCG
** * **
5747 GAAACCCGATAATACAAGAAACCCGAA-ACCC-
1 GAAACCCG--AA-ACCCGAACCCGAAACACCCG
*
5778 GAAACTCCGAAACCCGAAACCCTGTAA-A-CC-
1 GAAAC-CCGAAACCCG-AACCC-GAAACACCCG
*
5808 GAAACCCGTAAAACCGAACAACCG-AA-ACCCG
1 GAAACCCG-AAACCCGAAC--CCGAAACACCCG
* *
5839 GAAAACCCGACAACTCCAAACCCG-AATA-CCG
1 G-AAACCCGA-AAC-CCGAACCCGAAACACCCG
*
5870 GAAA-CCGCAAA-CCGAACCCG-AA-ACCCT
1 GAAACCCG-AAACCCGAACCCGAAACACCCG
* *
5897 GAAACCCGGAAA-CCGATAAACC-AGAA-ACCCA
1 GAAACCC-GAAACCCG--AACCCGA-AACACCCG
*
5928 GAAACCCGGGAAACCCGAAACCCG-GA-ACCC-
1 GAAACCC--GAAACCCG-AACCCGAAACACCCG
*
5958 GAAACCCGACACCCGAACCCG-AA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
*
5985 GAAACTCCGAAACCTCGAAAACCCGAAAC-TCCG
1 GAAAC-CCGAAACC-CG--AACCCGAAACACCCG
* *
6018 TAAACCCGCAATTACCTCGAACCCGAAAAACTCC-
1 GAAACCCG-AA--ACC-CGAACCCGAAACAC-CCG
* * *
6052 GAAAACCGAAA-CCGAAAATCCGGCAACCGAAACCCG
1 GAAACCCGAAACCCG--AA-CCCG-AA---ACACCCG
*
6088 GAAACCCGAAACCCGAAACCCG--A-ACCCT
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
6116 GAAACCCGAAACCCGAAACCCGAAA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
6145 GATAACCCGAAAAACCC-AACCCG-AA-A-CC-
1 GA-AACCCG--AAACCCGAACCCGAAACACCCG
* * *
6173 GCAACCCTATAAACCCCGACAACCCGAAAC-CCCT
1 GAAACCC--GAAA-CCCG--AACCCGAAACACCCG
*
6207 CAAACCCGAAAAAACCCCGAAATCCCGACAAC-CCC-
1 GAAACCCG---AAA-CCCG-AA-CCCGA-AACACCCG
*
6242 G-AACCCGAAACCCGAAACCCG-CA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
6269 GAAACCCGAA-CCTCGAAACCCGAAA-ACCCG
1 GAAACCCGAAACC-CG-AACCCGAAACACCCG
* *
6299 AAAACCCGAAAACCCGAAACTCCGTTAAACCGAACC-
1 GAAACCCG-AAACCCG-AAC-CCG--AAA-C-ACCCG
*
6335 GAAACCCCGAAACCCGAAACCCG-AACCCCCG
1 GAAA-CCCGAAACCCG-AACCCGAAACACCCG
* *
6366 AAAACCCTGAAACCCGACCCCG-AA-ACCC-
1 GAAACCC-GAAACCCGAACCCGAAACACCCG
6394 GAAA-CCGATAACCCCCGTATA-CCG-AA-A-CCG
1 GAAACCCGA-AA--CCCG-A-ACCCGAAACACCCG
*
6424 AAAACCCGAACACCGGCCGAAACCCGAAA-ACCC-
1 GAAACCCGAA-A-C--CCG-AACCCGAAACACCCG
*
6457 GAAACCC-ATAACCCGAAACCCGAACCCGAAACCC-
1 GAAACCCGA-AACCCG-AACCCGAA----ACACCCG
6491 G-AACCCGAAACCCGACACCGCGAAAC-CCC-
1 GAAACCCGAAACCCGA-ACC-CGAAACACCCG
* * *
6520 GAAACCCCTAAACCCGAACACGGGAA-ACCC-
1 GAAA-CCCGAAACCCGAAC-CCGAAACACCCG
* *
6550 -AAACATCGAAACCCGAAACCCGAAAC-CTCAACAC
1 GAAAC-CCGAAACCCG-AACCCGAAACAC-C--C-G
*
6584 GAAACCCGAAACCCGAAACCGAAA-ACCCG
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* * *
6613 AGAAATCCCGGACACCCTGAAACCGAAA-GCCCG
1 -GAAA-CCC-GAAACCC-GAACCCGAAACACCCG
*
6646 GAAACCCGAAA-CCGAAACGCG-AA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
6673 GAAACCC-AAACCCGAAACCGAATAC-CTC-
1 GAAACCCGAAACCCGAACCCGAA-ACACCCG
*
6701 GAAATCCCGGCAAACCCGAAAACTCGAAA-ACCC-
1 GAAA-CCC-G-AAACCCG--AACCCGAAACACCCG
*
6734 GAAACCCGCAACCACGAACACCAGGAAATCCAAACCC-
1 GAAACCCGAAACC-CGAAC-CC--GAAA--C--ACCCG
*
6771 GAACCCCCGAAACCCGAACACCCGAAA-A-CCG
1 GAA-ACCCGAAACCCG-A-ACCCGAAACACCCG
6802 G-AACCCGAAACCCGAACCCG-AA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
6828 GAAATCCCGAAACCCGAAACCCG-AA-A-CCG
1 GAAA-CCCGAAACCCG-AACCCGAAACACCCG
* *
6857 GAAACCCGAACAACCTCGAAAATCCGAAAC-CTCG
1 GAAACCCG-A-AACC-CG--AACCCGAAACACCCG
* * *
6891 AAAACCCGAAACCCCGAAATCCCGAAAAACCCT
1 GAAACCCGAAA-CCCG-AA-CCCGAAACACCCG
* * *
6924 GAAACCGCGCCAA-CCGAAACCGATACA--C-
1 GAAACC-CG-AAACCCGAACCCGAAACACCCG
6952 GAAACCCGAAA-CCGATAACCCGGGATAAATGCGAACCCG
1 GAAACCCGAAACCCG--AACCC--G--AAA--C--ACCCG
*
6991 AGAAACCCGAAACCGTGAAAATCCCG-AA-ACCC-
1 -GAAACCCGAAACC-CG--AA-CCCGAAACACCCG
7023 G-AA--CGAAACCCGAAACCCGAAA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
7049 GAAACCCGAAACCCGAAACCCG-AACAACCC-
1 GAAACCCGAAACCCG-AACCCGAAAC-ACCCG
* *
7079 GAACCCCGAAA-CCG-ACACCGAAACCCAAACCCC
1 GAAACCCGAAACCCGAAC-CCGAAA--C--ACCCG
7112 GAAACCCGAAAATACCCGAAACCCG-AAC-CCCG
1 GAAACCCG--AA-ACCCG-AACCCGAAACACCCG
*
7144 AAAACCCGAAACCGCGAAACCCG-AA-ACCCG
1 GAAACCCGAAACC-CG-AACCCGAAACACCCG
7174 TGAAACCCGAATACCCGAAATCCTCTGGAAAAGAACCCGAACTTCCG
1 -GAAACCCGAA-ACCCG-AA-CC-C--G---A-AA--C--AC--CCG
*
7221 CAAACCCGAAATCCCGAACCCGAAACA--CG
1 GAAACCCGAAA-CCCGAACCCGAAACACCCG
7250 GAAACCC-AAACCGCTATACCGAACCCG-AA-ACCC-
1 GAAACCCGAAA---C----CCGAACCCGAAACACCCG
7283 GAAACCCGAAAACCCG-ACACCG-AA-ACCC-
1 GAAACCCG-AAACCCGAAC-CCGAAACACCCG
* *
7311 GACACCCGAAACCCTGCATCCCGAAA-ACCC-
1 GAAACCCGAAACCC-G-AACCCGAAACACCCG
7341 GAAACCCGAAA--CGAAACCCG-AA-ACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
7368 AAAACTCCCGAAGACCCCGAAACCCG--A-ACCCG
1 GAAA--CCCGAA-A-CCCG-AACCCGAAACACCCG
*
7400 TAAACCCGAAACCCGCAAACTCCTGGGAAA-A-CC-
1 GAAACCCGAAACCCG--AAC-CC---GAAACACCCG
7433 GAAACCCGGAAACCCTGAAAACCCGAAA-ATCCC-
1 GAAACCC-GAAACCC-G--AACCCGAAACA-CCCG
* * *
7466 GAAACCCCGAAACCCGAAACCGGAA-ACCAG
1 GAAA-CCCGAAACCCGAACCCGAAACACCCG
* *
7496 CTAAACCCGAAACCCGAAACCCGGAAATACCC-
1 -GAAACCCGAAACCCG-AACCC-GAAACACCCG
*
7528 GAAA-CCGAAAACCACGAAACCCG-CA-ACCCG
1 GAAACCCG-AAACC-CG-AACCCGAAACACCCG
* *
7558 TAAACACGAATTTACCCGCAACCCG--A-A-CC-
1 GAAACCCGAA---ACCCG-AACCCGAAACACCCG
* * *
7587 GAAACCCGAAACCCGCAACCCCAACGAAACCCC
1 GAAACCCGAAACCCG-AACCCGAA--ACACCCG
7620 G-AA-CCGAAACCCGAAACCCG-AA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* * * *
7646 GACA-CCGAACCCCGCAACCAGAAA-AACC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
7674 GACAACTCCCGAAATCACGAAACCCGGATA-ACCC-
1 GA-AA--CCCGAAA-CCCG-AACCC-GAAACACCCG
* *
7708 GAAATGCCCTGAAA-CCGAAACCG-AAC-CCCT
1 GAAA--CCC-GAAACCCGAACCCGAAACACCCG
*
7738 GAAACCCGAAACCCCGAACCCGAAAC-CCCC
1 GAAACCCGAAA-CCCGAACCCGAAACACCCG
* *
7768 GAACCCCTGACACCCGAAACCCGAATA-ACCC-
1 GAAACCC-GAAACCCG-AACCCGAA-ACACCCG
* * *
7799 TAAATCCCGAAACCTCGAAACCCGATAAGAGCCG
1 GAAA-CCCGAAACC-CG-AACCCGA-AACACCCG
** *
7833 AGCTACCCGAAACGCCGAAACTCCG-AA-ACCCT
1 -GAAACCCGAAAC-CCG-AAC-CCGAAACACCCG
* *
7865 GAAACCCGAAACCCGAAACGGAGGAA-ACCC-
1 GAAACCCGAAACCCGAACCCGA--AACACCCG
*
7895 -AAACCCGAAACCCGAAAATCCCGTAATACCGAAACCCA
1 GAAACCCGAAACCCG--AA-CCCG-AA-A-C---ACCCG
* *
7933 GAAACCCGTACACCCGAA-CCGAAACTAAAACCG
1 GAAACCCG-AAACCCGAACCCGAAAC---ACCCG
* * *
7966 AAAAACCCGATAACCCGAAAACTCCGCTCGAACACCCT
1 -GAAACCCGA-AACCCG--AAC-CCG---AAACACCCG
* *
8004 GAAACCCGAAACCGCTGAAACCG-AATACCC-
1 GAAACCCGAAACC-C-GAACCCGAAACACCCG
*
8034 GAAACCCGAAACCCGGAACCCGATAAATACTCCCG
1 GAAACCCGAAACCC-GAACCCG---AA-ACACCCG
* * *
8069 TATCAACCCTAAATCCGAACCCCG-AA-ACCC-
1 GA--AACCCGAAACCCGAA-CCCGAAACACCCG
* *
8099 GAAACCCGAACCCCGTAAACCCGAAAC-CTC-
1 GAAACCCGAAACCCG--AACCCGAAACACCCG
* * *
8129 GAACCCCGCCAACCCGAAACCCGATA-ACCCG
1 GAAACCCG-AAACCCG-AACCCGAAACACCCG
8160 GTAAA-CCGTAAACCCGAAAACCCG-AA-A-CC-
1 G-AAACCCG-AAACCCG--AACCCGAAACACCCG
* *
8189 GACACCCGAAAACCCGAAACCCGAAAAACCC-
1 GAAACCCG-AAACCCG-AACCCGAAACACCCG
*
8220 GAAACCCGAAACTCCCGAAACCCGTAAA-ACCCC
1 GAAACCCGAAA--CCCG-AACCCG-AAACACCCG
*
8253 GCAACCCGAAACCCGAACCCGAAA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
*
8281 GAAA--CGAAACCCGTAAACCCTG-AATACCC-
1 GAAACCCGAAACCCG--AACCC-GAAACACCCG
*
8310 GAAACCC-AACACCCGAACCCGAAAC-CCTG
1 GAAACCCGAA-ACCCGAACCCGAAACACCCG
* *
8339 GAACTCCCGAAA-CCGCAACCCGCAA-A-CC-
1 GAA-ACCCGAAACCCG-AACCCGAAACACCCG
*
8367 GAAACCCGAAAAACCCGAAACCCG-CAC-CCCG
1 GAAACCCG--AAACCCG-AACCCGAAACACCCG
* *
8398 GAAACGCCGAAAGCCGCAACTCC-TAA-ACCCG
1 GAAAC-CCGAAACCCG-AAC-CCGAAACACCCG
* * * *
8429 AAAACCCTAACCCCGAAACCCGGAA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
8458 GAAA-CCGAAACCCGGAAACCCG-AA-ACCC-
1 GAAACCCGAAACCC-G-AACCCGAAACACCCG
*
8486 GAAACCCGAAACCCGGAAAACCGAAA-ACCC-
1 GAAACCCGAAACCC-G-AACCCGAAACACCCG
*
8516 -AAATCCGAAAACCCGAAACCTCG-AA-ACCC-
1 GAAACCCG-AAACCCG-AACC-CGAAACACCCG
*
8545 GAAATCCGAACCGAAACCCGAAACCCTAAA-ACCCTG
1 GAAA--C---CCGAAACCCG-AACCCGAAACACCC-G
* * *
8581 AAAACCCGAAACCCGCCACCCGATA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
8610 GAAACCCGAAACCCTGAAACCG--ATACCCG
1 GAAACCCGAAACCC-GAACCCGAAACACCCG
* *
8639 AAAAACCGAAACCCGAACCCCG--A-ACCCG
1 GAAACCCGAAACCCGAA-CCCGAAACACCCG
* * *
8667 GACATCCGAAACCCGAAACCCGGATA-ACCC-
1 GAAACCCGAAACCCG-AACCC-GAAACACCCG
*
8697 GAAA--CGAAACCCGAAACTCCGATA-ACCCG
1 GAAACCCGAAACCCG-AAC-CCGAAACACCCG
* * *
8726 AAAACCCGAAACCACAGAAAGCCGAAAAACCTCG
1 GAAACCCGAAACC-C-G-AACCCGAAACACC-CG
* * *
8760 AAAAACC-AAACCCGAAACCCGTAA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
8788 GAAA-CCGTAAGA-CCGAAACCCGAAACCCGAACCC-
1 GAAACCCG-AA-ACCCG-AACCCGAAA--C--ACCCG
*
8822 GTAACCCGATGGAACCCGCAA-CCG-AAC-CCAC-
1 GAAACCCGA---AACCCG-AACCCGAAACACC-CG
8853 GAAACCCGAAACCCGAAACCCG-AAC-CCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
8881 GAAA--CGAAATCCGAACCCGCAGAA-A--C-
1 GAAACCCGAAACCCGAACCCG-A-AACACCCG
* * *
8907 GAAAACCGAAA-CCGAAACCGGAA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
8934 GAAACCCGAAACCCGAAACCC--AA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
8961 GAAACCCGCAACCCGAAAAACCCGAAA-A-CCG
1 GAAACCCGAAACCCG---AACCCGAAACACCCG
* *
8992 TAAACCCG-CACCCGTAAACCCTGAAA-ACCC-
1 GAAACCCGAAACCCG--AACCC-GAAACACCCG
* *
9022 GAAACCCGAAAACCTCGACACCTGGAA-ACCC-
1 GAAACCCG-AAACC-CGA-ACCCGAAACACCCG
9053 GAAACCCGCGAAAACCCCGAAACTCCG-AA-ACCC-
1 GAAA-CC-CG-AAACCC-G-AAC-CCGAAACACCCG
* *
9086 GAAA--CGAAACCCAAACCCTTTG-AATACCC-
1 GAAACCCGAAACCCGAACCC---GAAACACCCG
*
9115 GAAACCCGCATAACCCGAAACCC-TAA-ACCC-
1 GAAACCCG-A-AACCCG-AACCCGAAACACCCG
**
9145 GAAACCCGAAACCCGCAAATCCCG--ACACCTA
1 GAAACCCGAAACCCG--AA-CCCGAAACACCCG
**
9176 GAACACCCGAAACCCGCAACTCCGACCCCGAACCC-
1 GAA-ACCCGAAACCCG-AAC-CCGA-AAC--ACCCG
* *
9211 GAACCCCGAAACCCGACTAACCGCAAACA-CC-
1 GAAACCCGAAACCCGA--ACCCG-AAACACCCG
* *
9242 G-AACCCGAAACCCGAAACCCG-TACAACCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* *
9271 GAAA-CCGAAACCCGAATAACCGAAAC-TCC-
1 GAAACCCGAAACCCG-A-ACCCGAAACACCCG
*
9300 G-AA--C-AAACCCGAAACCGAGAA-ACCC-
1 GAAACCCGAAACCCGAACCCGA-AACACCCG
*
9325 GAAACCCGTAAACCCGAACACG-AA-ACCC-
1 GAAACCCG-AAACCCGAACCCGAAACACCCG
9353 GAAACCCGAAACCCGAAACCCG-AACACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
9382 GAAACCCGAAA-CCGACAACCCGTAAACCCGACACG
1 GAAACCCGAAACCCG--AACCCG-AAA--C-ACCCG
*
9417 CGAAACCCGAAA-CCGAAACCCGAAAC-CCGCC
1 -GAAACCCGAAACCCG-AACCCGAAACACC-CG
*
9448 G-AACCCGAAA-CCGAA-CCG-AA-ACCTG
1 GAAACCCGAAACCCGAACCCGAAACACCCG
9473 GAAACCCGAAA-CCGAAAACTCCGAAAC-CCC-
1 GAAACCCGAAACCCG--AAC-CCGAAACACCCG
* *
9503 GATAACCCG-AACCCAAACCCGATA-ACCCG
1 GA-AACCCGAAACCCGAACCCGAAACACCCG
* * *
9532 AAAACTCCGCAACCCGAAACCCG-GACACCC-
1 GAAAC-CCGAAACCCG-AACCCGAAACACCCG
*
9562 TAAACCCGAAATACCCGAAACCCGGAAACCGCAACCCG
1 GAAACCCG-AA-ACCCG-AACCC-GAAA---C-ACCCG
* *
9600 AAAACCCGAAACCCTCGAATACCCGAAAAAACCCCG
1 GAAACCCGAAA-CC-CG-A-ACCCG-AAACA-CCCG
* **
9636 AGAAACCCGAAACCTCGAAACCCGGAGTACCTC-
1 -GAAACCCGAAACC-CG-AACCCGAAACACC-CG
*
9669 GACAACCCGTAAACCCGAAACCCGAAAGC-CTCG
1 GA-AACCCG-AAACCCG-AACCCGAAA-CACCCG
** *
9702 GAACGAAACGAAACCCTGAAACCCGAAAC-CTCG
1 GAA--ACCCGAAACCC-G-AACCCGAAACACCCG
* *
9735 CACA-CCGAAA-CCGAAACCCG-AA-A-CCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
** *
9761 GAAATCCCCGAAACCCGAAATACGGAA-ACCCG
1 GAAA--CCCGAAACCCG-AACCCGAAACACCCG
*
9793 GAAACCTCGAATCCCGAAATCCCG-AA-ACCCG
1 GAAACC-CGAAACCCG-AA-CCCGAAACACCCG
* *
9824 GAAACCCGGAAACCCGAACCTCTAAAC-CTCG
1 GAAACCC-GAAACCCGAACC-CGAAACACCCG
* *
9855 GAAACCCGATAATCCGCAACCCGATA-ACCC-
1 GAAACCCGA-AACCCG-AACCCGAAACACCCG
*
9885 GAAACCCGAGAAACCCGCAAATCCG-AA-ACCC-
1 GAAACCC--GAAACCCG--AACCCGAAACACCCG
*
9916 GAAACCCGTAGAATCCCGAACCCGGATAAC-CCTG
1 GAAACCCG-A-AA-CCCGAACCC-GA-AACACCCG
* * *
9950 TAAA-CCGAATACCTGAA-CCGAAAC-CGC-
1 GAAACCCGAA-ACCCGAACCCGAAACACCCG
* *
9977 GAAACCCGGCAACCCGAAACCCGGAA-ACCC-
1 GAAACCC-GAAACCCG-AACCCGAAACACCCG
* *
10007 GAAACCCGAACCCCGAAACCG-AA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* *
10034 G-AA-CCGAAACCCGAAACCGAAACCGAAACC-
1 GAAACCCGAAACCCGAACCCGAAA-C--ACCCG
* *
10064 GAAA-CCGAAA-CCGAAACCGACA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
*
10090 GAAACCCTAAAACCCGAAACCCG--A-ACCC-
1 GAAACCC-GAAACCCG-AACCCGAAACACCCG
* *
10118 GAAACCCGAAAACCGAACCCGAAA-TCCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
10146 GAAACCCGAAACCCGAAACCCG-AA-ACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
10174 G-AACCCGAAACCCGTAAACCCG-AA-ACCCG
1 GAAACCCGAAACCCG--AACCCGAAACACCCG
* * *
10203 TAACCCCGAAACCCGAAACCCGATTA-ACCCG
1 GAAACCCGAAACCCG-AACCCGA-AACACCCG
* *
10234 AAAACCCG-TACCCGGACAACCCCG-AA-ACCCG
1 GAAACCCGAAACCC-G--AA-CCCGAAACACCCG
10265 GAAACCCCGAAACCCCGAACCCG-AA-ACCC-
1 GAAA-CCCGAAA-CCCGAACCCGAAACACCCG
10294 GAAACTCCGAAACCCGATA-CCG-AA-ACCCG
1 GAAAC-CCGAAACCCGA-ACCCGAAACACCCG
**
10323 CTAACCCGAAATCCCGAAAACCCG-AAC-CCC-
1 GAAACCCGAAA-CCCG--AACCCGAAACACCCG
*
10353 GAAACCCGAAACCCGAAACCCGATAA-TCCC-
1 GAAACCCGAAACCCG-AACCCGA-AACACCCG
*
10383 GAAACCCGAAACCGGAAACCCGCAAA-ACCCG
1 GAAACCCGAAACCCG-AACCCG-AAACACCCG
10414 G-AACCCGAAACCCGAAAACCCGAAA-ACCC-
1 GAAACCCGAAACCCG--AACCCGAAACACCCG
*
10443 GCAACCCG-AACCCGAAACCCG-AA-ACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* **
10471 AATAATCTCCGAAACCCGAAACCCGAATGACGCC-
1 GA-AA-C-CCGAAACCCG-AACCCGAAACAC-CCG
*
10505 GAACACCCGATCAACCCGAAAACCCGGAA-A-CC-
1 GAA-ACCCGA--AACCCG--AACCCGAAACACCCG
10537 GAAACCCGAAACCCGGAAACCCG-AA-ACCCG
1 GAAACCCGAAACCC-G-AACCCGAAACACCCG
* *
10567 TAAACCCGTAAACCCGCAACCCGAAACCCGAACCCT
1 GAAACCCG-AAACCCG-AACCCGAAA--C--ACCCG
* * *
10603 GAAACCCGAACCCCGAAACCG-AA-ACCCT
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* * *
10631 GAAACCCGCAACCCGCAA-ACGAAACAAATCC-
1 GAAACCCGAAACCCG-AACCCGAAAC--ACCCG
*
10662 GAAACCCGAGGAA--CAAACCCG-AACA-CCG
1 GAAACCCGA--AACCCGAACCCGAAACACCCG
* * *
10690 GAAACCCGGAAACCCGAAACCAGAACCGAAACC-
1 GAAACCC-GAAACCCG-AACCCGAAAC--ACCCG
*
10723 GAATACCCGAAAAACCCGACATCCCGGTAA-ACCC-
1 GAA-ACCCG--AAACCCGA-A-CCC-GAAACACCCG
* *
10757 GAAACCCGAACACCCGAACCCCGTAATACCC-
1 GAAACCCGAA-ACCCGAA-CCCGAAACACCCG
* * *
10788 GAACCCCCGAACCCTCCGAAACCG-AA-ACCC-
1 GAA-ACCCGAA-AC-CCGAACCCGAAACACCCG
10818 GAAACCCGAAACCCGAAACCCG-AA-A-CC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
* * *
10845 GAAACCCGCACCCCGAACATCCCGAAAC-TCC-
1 GAAACCCGAAACCCG-A-A-CCCGAAACACCCG
*
10876 GAAACCCGCGAAACCCGAAACCC-TAA-ACCC-
1 GAAA-CC-CGAAACCCG-AACCCGAAACACCCG
*
10906 GAAA-CCGATATAACCGAACCCG--A-ACCC-
1 GAAACCCGA-A-ACCCGAACCCGAAACACCCG
10933 GAAACCCGAAACCCGAACCCGAAACGAGAACCC-
1 GAAACCCGAAACCCGAACCCGAAAC----ACCCG
* *
10966 TAAACCCGAAAACCCGAAACCCG--ACACCCTT
1 GAAACCCG-AAACCCG-AACCCGAAACACCC-G
*
10997 GATAACTCCGAAA-CCGAAACCG-AA-ACCC-
1 GA-AAC-CCGAAACCCGAACCCGAAACACCCG
* *
11025 GAAACCCGAAACCCGAAAACCGAAAC-CCGAACC
1 GAAACCCGAAACCCG-AACCCGAAACACC---CG
11058 GAAACCCCGAATACCCGAACCCGAAACACCCG
1 GAAA-CCCGAA-ACCCGAACCCGAAACACCCG
*
11090 AGAAACCCGAAACCCGTAAACCG-AA-ACCCG
1 -GAAACCCGAAACCCG-AACCCGAAACACCCG
11120 GAAACCCG-AACCCG-A--CG-AACACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* * *
11144 GAAATCCG-AACCCGAAATCC-AGACACCC-
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
11172 GAAACTCCGAAACCCGACACACCCGAAACCGAAACCCG
1 GAAAC-CCGAAACCCG--A-ACCCGAAA-C---ACCCG
* * *
11210 TAAACCCGAAA-CCGAAACCCGAAA-TCCAG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
**
11239 TCTAACCCGGAGAACCCCGAAACCCCGAAAC-CCC-
1 -GAAACCC-GA-AA-CCCG-AA-CCCGAAACACCCG
*
11273 G-AACCCGAAACCCGAAAACCG---CACCCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
11300 GATACCCCGAATACCCGATAACCCTCGAAACACCC-
1 GA-AACCCGAA-ACCCG--AA-CC-CGAAACACCCG
*
11335 GAACCCCGAAACCCGAACCCG-AA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
11362 GAAACCTCGAAACCCGAAACCCCG-AA-A-CC-
1 GAAACC-CGAAACCCG-AA-CCCGAAACACCCG
* *
11391 GAAA-CCGTACACCCGAAACCCG-CA-ACCCG
1 GAAACCCG-AAACCCG-AACCCGAAACACCCG
* *
11420 TAAACCCGAAACCCGAACCCG-AATACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
* *** *
11448 GCAACCCGAAATACCCG-ATTTGAAAC-TCCG
1 GAAACCCG-AA-ACCCGAACCCGAAACACCCG
* *
11478 AGAAACCCGGAAAACCG-ACCC-TAA-ACCC-
1 -GAAACCC-GAAACCCGAACCCGAAACACCCG
*
11506 GAAACCCGAAACCCGAACCAG-AA-A-CC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
11532 GAAACCCGAAAACCCGAACCCCGAAA-ACCC-
1 GAAACCCG-AAACCCGAA-CCCGAAACACCCG
*
11562 GAAACCCGAAACCCGAACCCCGCGAA-ACCC-
1 GAAACCCGAAACCCGAA-CCCG-AAACACCCG
*
11592 GAAACCCCGATAAACCGAAACCCGAAAC-CCC-
1 GAAA-CCCGA-AACCCG-AACCCGAAACACCCG
* *
11623 GAAACCCGAATATCCGTAAACCG-AA-ACCC-
1 GAAACCCGAA-ACCCG-AACCCGAAACACCCG
*
11652 G-AACCCGAAACCCGAAACCCGAAA-A-CCA
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
11680 GAAACCCGAAACTTCCCGAAACCG-AA-ACCC-
1 GAAACCCGAAA---CCCGAACCCGAAACACCCG
11710 GAAACCCGACAACCCGAATAACCCG--A-ACCC-
1 GAAACCCGA-AACCCG---AACCCGAAACACCCG
* * *
11740 TAACCCCGAAACCCGAACCC-AGA-ACCC-
1 GAAACCCGAAACCCGAACCCGAAACACCCG
11767 GAAACCCGAATACCCGAAACCCCGAAA-ACCC-
1 GAAACCCGAA-ACCCG-AA-CCCGAAACACCCG
* *
11798 GAAACCCTGAAACCCGAAACCGTAA-ACCC-
1 GAAACCC-GAAACCCGAACCCGAAACACCCG
*
11827 GAAACCCCGCAACCCTGAAACCCG-AA-ACCCG
1 GAAA-CCCGAAACCC-G-AACCCGAAACACCCG
11858 GAAACCCGAAACCCAGAACCCGAAA-ACCC-
1 GAAACCCGAAACCC-GAACCCGAAACACCCG
*
11887 GAAACCCCG-AACTCCGAAACCCG-CA-ACCC-
1 GAAA-CCCGAAAC-CCG-AACCCGAAACACCCG
*
11916 GAAACCCGAAACCCGAAACCCG-AATA-CCG
1 GAAACCCGAAACCCG-AACCCGAAACACCCG
*
11945 AGAAACCCGAACCTCCGAAACCCG----ACCC-
1 -GAAACCCGAAAC-CCG-AACCCGAAACACCCG
*
11973 GAAACCCGAAAATCCCGAAACCCGAAA-A-CCT
1 GAAACCCG-AAA-CCCG-AACCCGAAACACCCG
12004 GAAA-CCGAAACCCGAAACCC-AAAC
1 GAAACCCGAAACCCG-AACCCGAAAC
12028 CCAAAACCCC
Statistics
Matches: 9299, Mismatches: 971, Indels: 3082
0.70 0.07 0.23
Matches are distributed among these distances:
23 4 0.00
24 50 0.01
25 134 0.01
26 300 0.03
27 716 0.08
28 1244 0.13
29 1462 0.16
30 1430 0.15
31 1260 0.14
32 842 0.09
33 635 0.07
34 430 0.05
35 255 0.03
36 219 0.02
37 147 0.02
38 65 0.01
39 29 0.00
40 28 0.00
41 14 0.00
42 8 0.00
43 4 0.00
44 2 0.00
45 5 0.00
46 13 0.00
47 3 0.00
ACGTcount: A:0.40, C:0.40, G:0.15, T:0.05
Consensus pattern (30 bp):
GAAACCCGAAACCCGAACCCGAAACACCCG
Found at i:723 original size:95 final size:95
Alignment explanation
Indices: 521--12035 Score: 1555
Period size: 95 Copynumber: 119.6 Consensus size: 95
511 CCGAACACCC
*
521 GAAACCTGAAA-CCG-AAACCCGGAAACCCGGAATACC-GTAAACCCGAAACCCGAACAGAAACC
1 GAAACCCGAAACCCGTAAACCC-GAAACCC-G-A-ACCAG-AAACCCGAAACCCG---A-AAACC
* * *
583 GAAAACTCGAAA-CCG-AACCCGAAACC-CTGAACCCC--
57 GGAAACCCGAAACCCGAAACCCGACACCGC-GAACCCCGG
*
618 G-AACCCGAAACCCGTAAACTCCGAAACCCGAACCAGAAACCCGAAACCCTAAAACC-GAAACCC
1 GAAACCCGAAACCCGTAAAC-CCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAACCC
*
681 GCAACCCGAAACCCGACACCGCGAACCCCGG
65 GAAACCCGAAACCCGACACCGCGAACCCCGG
* * *
712 GAAACCGGAAACCCGTAAACCCGAAACCCGAACCCGAAACCCGAAACCCGAAACCCGGAAACCCG
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAACCCG
* *
777 AAACCCGAAACCCGAAAACC-CGAA-ACC--
66 AAACCCGAAACCCG-ACACCGCGAACCCCGG
* * * *
804 G-CACCCGAAAACCCAT-AACCCGAAAGCCCGAAGTCCCG-AACCCG-AACTCCTGTAAAACTCC
1 GAAACCCG-AAACCCGTAAACCCGAAA-CCCGAA--CCAGAAACCCGAAAC-CC-G-AAAAC-CG
* * * ** *
865 GAAACCCGAAA-CCGAAACCGGGAAACCCTCGAA-TACTG
58 GAAACCCGAAACCCGAAACC-CGACA-CCGCGAACCCCGG
* * * * * * *
903 GAAACCCCGACACTCG-AAAGCCCGAAACACGAAAACCCGAAAACCCGAAA-CCGGAACCCCGAA
1 GAAA-CCCGAAACCCGTAAA-CCCGAAACCCG--AACCAG-AAACCCGAAACCCGAAAACCGGAA
* *
966 ACCCGGAAACCCGAAACCCGAAACC-CGAAACCTC-G
61 ACCC-GAAACCCGAAACCCGACACCGCG-AACCCCGG
* * ** *
1001 GAAACCCGAACCCCG-AAACCAGCAAACCCCCGAAACC-GAAACTCCGAAACCC-TCAACCCGAA
1 GAAACCCGAAACCCGTAAACCCG-AAA--CCCG-AACCAGAAAC-CCGAAACCCGAAAACCGGAA
* * *
1063 TAGCCCGAAA-CCGAAACCCGAAACC-CGAAACCC-T
61 -A-CCCGAAACCCGAAACCCGACACCGCGAACCCCGG
* ** *
1097 G-AA-CCG-AACCCG-AAACAC-AAACTCCGATA--A-AAACCCGAAACCCGAACCCCTG-AA-C
1 GAAACCCGAAACCCGTAAACCCGAAAC-CCGA-ACCAGAAACCCGAAACCCGAAAACCGGAAACC
* *
1152 CGAAACCCGTAACCCGA-ACC-CG-ACACCCGA
64 CGAAACCCGAAACCCGACACCGCGAAC-CCCGG
* * *
1182 CAAA-CCGAAA-CCG-AAACCCGGAAATCACCCGAAACGAGAAACCCGAAACCCGAAAACCGAAA
1 GAAACCCGAAACCCGTAAACCC-G-AA--ACCCG-AACCAGAAACCCGAAACCCGAAAACCGGAA
*
1244 ACCC--AACCCTGAAACCCGA-ACC-CGAAACCCC-C
61 ACCCGAAACCC-GAAACCCGACACCGCG-AACCCCGG
* * * * * * *
1276 GCACCCCGAAACCCGCAAACCCGCATACCCGAAACCCGAAACCCGAAA-CCGAAAACCCGCAA-C
1 GAAACCCGAAACCCGTAAACCCG-AAACCCG-AACCAGAAACCCGAAACCCGAAAACCGGAAACC
* *
1339 CGAAAACCCGAAAACCTGTA-A-----AAACCC--
64 CG-AAACCCG-AAACCCG-ACACCGCGAACCCCGG
* * * *
1366 GAAACCCG-AACCCGCAAATCCGATCAACCCGGAAACCGGAAACCCGAAACTCG-AAACC-GAAT
1 GAAACCCGAAACCCGTAAACCCGA--AACCC-G-AACCAGAAACCCGAAACCCGAAAACCGGAA-
* * *
1428 ACCCTGGAAACCCGAAA-CCGAGACCG-AAAACCC--
61 ACCC--GAAACCCGAAACCCGACACCGCGAACCCCGG
* * * *
1461 GCAACCCGAAACCCG-AAA-CCGAAACCCGAAACCCGGAAAACCCGGAAAACCCGCACGAACCCG
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AA-CCAG-AAACCC-G-AAACCCG-A-AAACCGG
* *
1524 AAACCCG-AACCCGTAAACCCGA-AAC-CGAAACCCGG
59 AAACCCGAAACCCG-AAACCCGACACCGCGAACCCCGG
*
1559 GAAAACCCG-AACCCG-AAACCCGAAACCCGAAACCCGAAACCCGGAAACCCG--AACC----AC
1 G-AAACCCGAAACCCGTAAACCCGAAACCCG-AACCAGAAACCC-GAAACCCGAAAACCGGAAAC
* * **
1616 CCGAACATCCCGAGATACCCGGAAACCG-AAATTCC--
63 CCGAA-A-CCCGA-A-ACCC-GACACCGCGAACCCCGG
* *
1651 GAAACTCC-ACAACCCAGAATAATAACCCG-AACCCGAAACCCGAATACCCGAAAACTC--AAAC
1 GAAAC-CCGA-AACCC-G--T-A-AACCCGAAACCCG-AACCAGAA-ACCCG-AAACCCGAAAAC
* * *
1712 CCGAAACCCGAAACCCGAAACCCGAATACC-CGATAACCC--
56 CGGAAACCCGAAACCCGAAACCCG-ACACCGCGA-ACCCCGG
* * *
1751 GAAACCCGAAA-CCG-ATACCCGAAACCCGCAACCCGAATCCCGAAACCCGAAAAACCCGGAAAC
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AACCAGAAACCCGAAACCCG-AAAA-CCGGAAAC
* *
1814 CCGGAAACCTCGAAACCCCGAAACC-CGTAAACCC--
63 CC-GAAACC-CGAAA-CCCGACACCGCG-AACCCCGG
* * * *
1848 GAAACCCGCAA-CCG-AGACCCGAAA-CCGAACCGGGAAACCCGTAACACCCG-AAACTTCCGAT
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACC-AGAAACCCG-AA-ACCCGAAAAC--CGGA-
* *
1909 AA-CCGAAACCCGTAAACCCGATAAGCC-CTGAAACCC--
60 AACCCGAAACCCG-AAACCCGA-CA-CCGC-GAACCCCGG
** *** * * *
1945 GAAACCCGAAATATCCCGGCAACCCGAATATATG-CCGCATAAACACCGCAAATCCGAAAACCCG
1 GAAACCCG-AA-A-CCCGTAAACCCGAA-ACCCGAAC-CAGAAAC-CCG-AAACCCGAAAA-CC-
* *
2009 GGAAACCCGAAACCCGTAAACCCGACAAC-CGAAACCC--
57 GGAAACCCGAAACCCG-AAACCCGACACCGCGAACCCCGG
* *
2046 GAAACCCGAAACCCG-AAACCCGAAACCCCGATAACCCGCGAAAACCCGAAACCCGAAAACCCGA
1 GAAACCCGAAACCCGTAAACCCGAAA-CCCG--AA-CC-AG-AAACCCGAAACCCGAAAACCGGA
* *
2110 AACCCGAAACCCGATAA-CCGA-ACCCCGAAACCC--
60 AACCCGAAACCCGA-AACCCGACACCGCGAACCCCGG
* * * *
2143 GACACCCTAAAAACCCGCAAA-CCGAAACCCGAAACCCGAAACCTCGAAACCCG-AAA-C-GATA
1 GAAACCC--GAAACCCGTAAACCCGAAACCCG-AACCAGAAACC-CGAAACCCGAAAACCGGA-A
* *
2204 ACCCGAAACCCTGAAACCCGAAATTACC-CGAAACCCTCGAT
61 ACCCGAAACCC-GAAACCCG--A-CACCGCG-AACCC-CG-G
* * * * *
2245 AAAACGCGAAACCCCG-AAACCCGAAACCCGAAACCCG-AACCCGGAAAACCGAAAACACCG-AA
1 GAAACCCGAAA-CCCGTAAACCCGAAACCCG-AACCAGAAACCC-GAAACCCGAAAAC-CGGAAA
* *
2307 CTCCGAAACCCGAAACCCGAAACC-CGAAACCC--
62 C-CCGAAACCCGAAACCCGACACCGCGAACCCCGG
* * *
2339 GAAACCCGAAACCCG---A-CCGACACCCGACACCTCGGAAA-CCGAAACCCG-AAACCCGAAAC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGA-A-C-CAGAAACCCGAAACCCGAAAACCGGAAAC
* *
2398 CCTAAACCTCGGAAACCCGACTAACC-CGAA-ACC--
63 CCGAAACC-C-GAAACCCGAC--ACCGCGAACCCCGG
* *
2431 G-AACTTCCGAACCCCG-AAACCCTGAAACCCCGAACCCGGAAACCCGAGAAACCCTGAAAAACC
1 GAAAC--CCGAAACCCGTAAACCC-GAAA-CCCGAA-CCAGAAACCC--GAAACCC-G-AAAACC
** * * * *
2494 CTAAACCCCGATTAACCCGAAATCCTCGAAAAACCTCAAACTCC--
57 GGAAA-CCCGA--AACCCGAAA-CC-CG--ACACCGCGAACCCCGG
* * * *
2538 G-AACCCGAAACCCG---ACACGATAACCCGAAACCCGAAAACCCGCAACCCGAAATCCCGGAAA
1 GAAACCCGAAACCCGTAAACCCGA-AACCCG-AACCAG-AAACCCGAAACCCGAAA-ACCGGAAA
* * * *
2599 CCCGAATAATCCCGAAAAACCGACAAC-CGAAACCC-T
62 CCCG-A-AA-CCCG-AAACCCGACACCGCGAACCCCGG
* * * ** *
2635 GAAACCCGCAACCCCGCAGAAACCGAAA-CCG---C-GAAACCCTCAACCCG-AAACCCGATAAC
1 GAAACCCG-AAACCCGTA-AACCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGA-AAC
*
2694 TCCGAATATCCCGAAACTCCGTA-ACCG-GAAACCC--
63 -CCGAA-A-CCCGAAAC-CCG-ACACCGCGAACCCCGG
* * *
2728 GAAACCCGAAACCC-TGAACCAGATTATACCCCGAAACCCGAAACCCG-AACCCGAAAAACCCGG
1 GAAACCCGAAACCCGTAAACCCGA--A-A-CCCG-AACCAGAAACCCGAAACCCG-AAAA-CCGG
* * *
2791 AAA-CCGAAACACGAACCCCGAAACC-CGCAA--CC--
59 AAACCCGAAACCCGAAACCCGACACCGCG-AACCCCGG
* * **
2823 GAAACTCCGAAACCCG--AACCCTGAAACCCGAACCCGAAACCCGAAACGC-AACTCC-GAAACC
1 GAAAC-CCGAAACCCGTAAACCC-GAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAACC
* * * ** *
2884 CGAAACACGCAACTCGA-A---AAAACCTC--
64 CGAAACCCGAAACCCGACACCGCGAACCCCGG
* **
2910 GAAACCCGAAA-CCGTAAACCCG------GAACCCGAAACCCGACAACCTCGAAAAACC-GCTAC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAACCCGA-AACC-CG-AAAACCGGAAAC
* * *
2967 CCGAAACCCGAATACTCCGAAACTC-AGATAACCC-G
63 CCGAAACCCGAA-AC-CCGACAC-CGCGA-ACCCCGG
* * * * * * * *
3002 TAAACCCGAAACTCCGAAAACCCG-AACCCGTACAACGCAACCGGCAACCCGAAACCCGGAAGAC
1 GAAACCCGAAAC-CCGTAAACCCGAAACCCGAACCA-GAAACCCGAAACCCGAAAACCGGAA-AC
* * *
3066 CCGAAAACCCGAAAACCCGAAAACCTG-AAACCCGCCTG
63 CCG-AAACCCG-AAACCCG-ACACC-GCGAA-CC-CCGG
* * * *
3104 TAAACCCGAAAACCG-AAAACCG-AACCCGAAACC-GAAACCCGAATACCCG-AAACCCGAAA-C
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AACCAGAAACCCGAA-ACCCGAAAACCGGAAACC
* * *
3164 CGAACCCCGATAACCCCGAAACC-CGAAACCC--
64 CGAAACCCGA-AA-CCCGACACCGCGAACCCCGG
* * * * *
3195 G-AACCCGAAAACAG-AAACCCGAAACCCGAAAACCCCTGAAACCCGAAACCCGTAAACCCGAAA
1 GAAACCCGAAACCCGTAAACCCGAAACCCG--AA--CCAGAAACCCGAAACCCGAAAACCGGAAA
*
3258 -CCGAAACCCTG-AACCCGAAAAACCGCGAACCCC--
62 CCCGAAACCC-GAAACCCG--ACACCGCGAACCCCGG
* * *
3291 GAAACCTCCGAAACCCG-AAA-CCAAAACCCGACAACC-GAAAACCCTGAAA-CCGCAACCCGGA
1 GAAA-C-CCGAAACCCGTAAACCCGAAACCCG--AACCAG-AAACCC-GAAACCCGAAAACCGGA
*
3352 AACTCCGAATACCCG-AACCCGTTAAAACC-CGCAA--CC-G
60 AAC-CCGAA-ACCCGAAACCCG---ACACCGCG-AACCCCGG
* * *
3389 GAAACACGAAACCCG-AAACCCGAACAGCCTCGACATCCCGAAACCCG-AACCCGAAAACCCGAA
1 GAAACCCGAAACCCGTAAACCCGAA-A-CC-CGA-A-CCAGAAACCCGAAACCCGAAAACCGGAA
*
3452 ACCC-AAACCCCGAAA-CCGA-ACC-CGGAAACCC--
61 ACCCGAAA-CCCGAAACCCGACACCGC-GAACCCCGG
*
3483 GAAA-CCGAAACCC--AAA-CCGTAAACCCGAAAACCCG-AACCTCGAAAACCCTG-AAACC-GA
1 GAAACCCGAAACCCGTAAACCCG-AAACCCG--AACCAGAAACC-CG-AAACCC-GAAAACCGGA
* *
3541 AACCCGAACACCCGAAACCCGAAACC-CGAA-CCC-T
60 AACCCGAA-ACCCGAAACCCGACACCGCGAACCCCGG
* * * * * * * *
3575 GAATAGCCGGAACCCCTGAACACCAGAAACCCAATATCCCGAAACCCGAAA-CCGATAACCAGAT
1 GAA-ACCCGAAACCCGT-AA-ACCCGAAACCCGA-A-CCAGAAACCCGAAACCCGAAAACCGGA-
* *
3639 AACCCGAATACCCCGACACCCGA-AAC-CGAA-CCC-G
60 AACCCGAA-A-CCCGAAACCCGACACCGCGAACCCCGG
* * * * * *
3673 G-CACCCGAAACCCGGAAAACCCGCGAAAACCCGAAACCCGGCATACCCGGAAACCGGAAACCCG
1 GAAACCCGAAACCC-GTAAA-CC-CG-AAACCCG-AA-CCAG-AAACCC-GAAACCCGAAAACCG
* * * *
3737 TAAAACCGAAACCCGAAACTCTCGAAACC-CGAATACCC--
58 GAAACCCGAAACCCGAAAC-C-CGACACCGCGAA-CCCCGG
* * * *
3775 GAAACCCGTGAAAACCCGAAAACCCG-AACCCGAACCCGAAAAACCCCGTAACCCGATATACCCG
1 GAAACCC--G-AAACCCGTAAACCCGAAACCCGAA-CC-AGAAA-CCCGAAACCCGA-A-AACCG
*
3839 G-AACCCGAAACCCGACAACCCGAAACC-CGGAA-CCCGG
58 GAAACCCGAAACCCGA-AACCCGACACCGC-GAACCCCGG
* * * * ** *
3876 AAAAGCCGAAACCCGTACACCCGAACACCCGACACCCGAAACCCGAAACCC-AACCCCTGAAACC
1 GAAACCCGAAACCCGTAAACCCGAA-ACCCGA-ACCAGAAACCCGAAACCCGAAAACCGGAAACC
*
3940 CGAAAAACCC-AAACCCGA-ACC-CGAAACCC--
64 CG--AAACCCGAAACCCGACACCGCGAACCCCGG
* * * *
3969 GCAACCCGAAA-----AAACCTCGAAACCCGAAACCCG-AACCTCGGAACCCGATCAAACC-TAA
1 GAAACCCGAAACCCGTAAACC-CGAAACCCG-AACCAGAAACC-CGAAACCCGA--AAACCGGAA
* *
4027 ACCCG-AA-CCGAAAACCCGAAATCC-CGAAAACCC--
61 ACCCGAAACCCG-AAACCCGACA-CCGCG-AACCCCGG
* * * * * * *
4060 GAAACCCGAAAACC-TAAACCCGAAACCCGGAACCCGGAACCCCAAAACCG-AAACCCGAACCGC
1 GAAACCCGAAACCCGTAAACCCGAAACCC-GAACCAGAAACCCGAAACCCGAAAACCGGAAAC-C
* * *
4123 CGAAA-CCGATAACCTGAAACC-CGAAACTCC--
64 CGAAACCCGA-AACCCGACACCGCG-AACCCCGG
*
4153 GAAACCCGAAACCCG-AAACCTCGAAACCCGAAACCCCGCTAAACCCGGTGAAACCCCGAAAACC
1 GAAACCCGAAACCCGTAAACC-CGAAACCCG-AA-CCAG--AAACCC---GAAA-CCCGAAAA-C
* * * *
4217 CTGAAAATCCGAAAACCCTGAAACCCCGAAACAC-CGAA-ACC-G
56 C-GGAAACCCG-AAACCC-GAAA-CCCGACAC-CGCGAACCCCGG
* * * *
4259 GAAACCCGAAACCCG-CAA-CCGAAACCCGAAAACCCGAAACCCGAAAGCCGATAACC-GAGAAC
1 GAAACCCGAAACCCGTAAACCCGAAACCCG--AACCAGAAACCCGAAACCCGAAAACCGGA-AAC
* * *
4321 CTCGAAATCCCGAAA-ACGAAACC-CGAAACCC-G
63 C-CGAAA-CCCGAAACCCGACACCGCGAACCCCGG
* * * * *
4353 AAAACCTCGAAACCCG---ACCCGCAA-CCGAAACCCGAAACCCGAAACCCGTAAACCCGAAACT
1 GAAACC-CGAAACCCGTAAACCCGAAACCCG-AACCAGAAACCCGAAACCCGAAAACCGGAAAC-
* *
4414 CCG-AACCCGAAACCCGAAACC-CGCAAACCC-G
63 CCGAAACCCGAAACCCGACACCGCG-AACCCCGG
* * ** * * * *
4445 AAAATGCCGAATTACCCGTATAACCCTCAACCCGTAAACCCGAAAGCCGAAACGCG-AAACTCCG
1 GAAA-CCCGAA--ACCCGTA-AACCCGAAACCCG--AACCAGAAACCCGAAACCCGAAAAC-CGG
* * * *
4509 -CACCCGAAACCCGCAAACCCGAAACC-CGTTAAAACGCTCGT
59 AAACCCGAAACCCG-AAACCCGACACCGCG----AAC-CCCGG
* * * * * *
4550 GCAACCCGAATACTCG-AAA-CCGAAA-CCGAAACCCG-AACCCGGAACCCCGAAACCCCGAAAC
1 GAAACCCGAA-ACCCGTAAACCCGAAACCCG-AACCAGAAACCC-GAAACCCGAAAACCGGAAA-
* * *
4611 CCCTAAGACCTGAAACCCGA-ACC-CGAAACCC-G
62 CCCGAA-ACCCGAAACCCGACACCGCGAACCCCGG
* * ** *
4643 AAAACCCG-AACCCG-AAACCCCGAAACCCGAAACCCCGATAAACCCGAAACCCGCCAACCCGAA
1 GAAACCCGAAACCCGTAAA-CCCGAAACCCG-AA--CC-AGAAACCCGAAACCCGAAAACCGGAA
4706 TACCCGAACAACCGAACGAAAACCCG-CAACC-CGTAA-CCC--
61 -ACCCG-A-AACC---CG-AAACCCGAC-ACCGCG-AACCCCGG
* * * *
4745 GAAACCCGCAATA-CCGAAAACCCGTAAACCCGTAAACCCGAAACCGCCCGAAAAACCG-AACCC
1 GAAACCCG-AA-ACCCGTAAACCCG-AAACCCG--AACCAGAAA---CCCG-AAACCCGAAAACC
* * **
4808 GTGAAACCCGACGAAACCCGGAAATCCTGAATACC-CGAA-TAC-G
57 G-GAAA-CC--CGAAACCC-GAAA-CCCG-ACACCGCGAACCCCGG
* * * *** * * *
4851 AAAACCCGAAACCCG-AAATCCTACAACGAAAACCTCGAAA-CCGAAATCCC-TAAACCCGAAAC
1 GAAACCCGAAACCCGTAAACCCGA-AACCCGAACC-AGAAACCCGAAA-CCCGAAAACCGGAAAC
* * * * *
4913 CCGAAACCCGGAAACCGCGATAACCG-AAACACTGT
63 CCGAAACCC-GAAACC-CGA-CACCGCGAACCCCGG
* *
4948 CACAACCCGAAACCCAGCGGTAAACCCGACAATCCTCGAAACCCGAAACCCG-AACCCGATAAAC
1 GA-AACCCGAAA-CC--C-GTAAACCCGA-AA-CC-CG-AACCAGAAACCCGAAACCCGA-AAAC
* ** *
5012 CCGAAACCCGAAATCCCTCAACCCGAAACC-CG-ACACCC--
56 CGGAAACCCGAAA-CCCGAAACCCGACACCGCGAAC-CCCGG
* *
5050 GAAA--CG-AACCCG--AACCCGAAACCCTGAAACCCCGAAACCCTG--ACCC-AAAACCCGAAA
1 GAAACCCGAAACCCGTAAACCCGAAACCC-G-AA-CCAGAAACCC-GAAACCCGAAAACCGGAAA
* ** *
5107 CCCGAAACCC-AAACTCCGTAAACCTTGAAACCC-G
62 CCCGAAACCCGAAAC-CCG-ACACCGCGAACCCCGG
* * * ** *
5141 AAAACCCGGAAACCCG-AGGAACCCGAATCCCCGACTACCCTGAAACCCG-AACCCGAACCCCCG
1 GAAACCC-GAAACCCGTA--AACCCGAA-ACCCGA--A-CCAGAAACCCGAAACCCGAAAACCGG
*
5204 AACCCCCGAAACCCGAAATACCCGGGA-ACC-CGAAACCCC-G
59 AA-ACCCGAAACCCG-AA-ACCC--GACACCGCG-AACCCCGG
* * * *
5244 GAAACTCCGAATAACCCTGGAAACACCTGCTACCCCGAAACTCAGAAA-CCGAACACCTCGAAAC
1 GAAAC-CCG-A-AACCC-GTAAAC-CC-G-AAACCCG-AAC-CAGAAACCCGAA-ACC-CGAAAA
* * ** *
5308 CCTG-AA-CCGAAACCCGGAAACCCTGAATACCGTAAAACCTC--
55 CCGGAAACCCGAAACCC-GAAACCC-G-ACACCG-CGAACCCCGG
* * *
5349 GAAACCCGAAACCCG-AAA-GC-AAACCCGAAAACCCGAAACCCGTACAACCCG-AAACCCGAAA
1 GAAACCCGAAACCCGTAAACCCGAAACCCG--AACCAGAAACCCG-A-AACCCGAAAACCGGAAA
* * * *
5410 TCCTATGAAACCCGAAACCGGAAACACCAG-AATAACCCGG
62 -CC--CGAAACCCGAAACCCG--ACACC-GCGA-ACCCCGG
* ** *
5450 GAAACCCG-AA-CCG-AAACCCGAAA-CCGAAACACGAAACCCGACCCCCG-AAACCTCGAAACC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCA-GAAACCCGAAACCCGAAAACC-GGAAACC
* *
5510 CGAATACCCGAAACCCCGAAACC-CGAAACCC--
64 CGAA-ACCCGAAA-CCCGACACCGCGAACCCCGG
* * * *
5541 GAAACCCGAACCCCG-AAACCCGAAACCCGCAACCCGAGAACCCGAAACCCG-AACCCGGAACAT
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AACCAGA-AACCCGAAACCCGAAAACCGGAA-AC
* * *
5604 CC--AACCCGAAAACCGAAACC-CGAATACCC-G
63 CCGAAACCCGAAACCCGACACCGCGAA-CCCCGG
* * * * *
5634 AAAACCCAAAACCGCG-AAATCC----CTCGAAACCCGAAACCCGAAACCCCGAAAACC-G-AAC
1 GAAACCCGAAACC-CGTAAACCCGAAACCCG-AACCAGAAACCCGAAA-CCCGAAAACCGGAAAC
5692 CTCGGAAA-CCGAAA-CCGACACC-CTGAAACCCC--
63 C-C-GAAACCCGAAACCCGACACCGC-G-AACCCCGG
* * *
5724 GAAACCCGATATACCCG-AAAACCGAAACCCGATAATACAAGAAACCCGAAACCCG-AAACTCCG
1 GAAACCCGA-A-ACCCGTAAACCCGAAACCCG---A-ACCAGAAACCCGAAACCCGAAAAC-CGG
* **
5787 AAACCCGAAACCCTGTAAA-CCGAAACC-CGTAAAACC--
59 AAACCCGAAACCC-G-AAACCCGACACCGCG-AACCCCGG
* * * * * *
5823 GAACAACCGAAACCCGGAAAACCCGACAACTCCAAACCCGAATACCGGAAA-CCGCAAACC-G-A
1 GAA-ACCCGAAACCC-GTAAACCCGA-AAC-CCGAACCAGAA-ACCCGAAACCCGAAAACCGGAA
* ** * *
5885 ACCCGAAACCCTGAAACCCGGAAACCGATAA-ACC-A
61 ACCCGAAACCC-GAAACCC-GACACCGCGAACCCCGG
* * * *
5920 GAAACCCAGAAACCCGGGAAACCCGAAACCCGGAACCCGAAACCCGACACCCG--AACCCGAAAC
1 GAAACCC-GAAACCC-GTAAACCCGAAACCC-GAACCAGAAACCCGAAACCCGAAAACCGGAAAC
* *
5983 CCGAAACTCCGAAACCTCGAAAACC-CGAAACTCC-G
63 CCGAAAC-CCGAAACC-CG-ACACCGCG-AACCCCGG
* * * *
6018 TAAACCCGCAATTACCTCG--AACCCGAAA----AACTCCGAAAACCGAAA-CCGAAAATCCGGC
1 GAAACCCG-AA--ACC-CGTAAACCCGAAACCCGAAC-CAGAAACCCGAAACCCGAAAA-CCGGA
* *
6076 AA-CCGAAACCCGGAAACCCGAAACC-CGAAACCC--
60 AACCCGAAACCC-GAAACCCGACACCGCGAACCCCGG
* *
6109 G-AACCCTGAAACCCG-AAACCCGAAACCCGAAAACCCGATAACCCGAAAAACCC---AACCCGA
1 GAAACCC-GAAACCCGTAAACCCGAAACCCG--AACCAGA-AACCCG--AAACCCGAAAACCGGA
* * *
6169 AA-CCGCAACCCTATAAACCCCGACAACC-CGAAACCCC-T
60 AACCCGAAACCC--GAAA-CCCGAC-ACCGCG-AACCCCGG
* * * *
6207 CAAACCCGAAAAAACCCCG-AAATCCCGACAACCCCGAACCCGAAACCCGAAACCCG-CAACCCG
1 GAAACCCG---AAA-CCCGTAAA-CCCGA-AA-CCCGAACCAGAAACCCGAAACCCGAAAACCGG
* *
6270 AAACCCG-AACCTCGAAACCCGAAAACC-CGAAAACCC-G
59 AAACCCGAAACC-CGAAACCCG-ACACCGCG-AACCCCGG
* * *
6307 AAAACCCGAAACTCCGTTAAACCGAACCGAAACCCCGAAACCCGAAACCCGAACCCCCGAAAACC
1 GAAACCCGAAAC-CCG-TAAA-C---CCGAAA-CCCG-AACCAGAAACCCGAA-ACCCGAAAA-C
* * * ** *
6372 CTGAAACCCG-ACCCCGAAACCCGAAACCGATAACCCCCG
56 CGGAAACCCGAAACCCGAAACCCGACACCGCGAACCCCGG
* * * * * *
6411 TATA-CCGAAA-CCGAAAACCCGAACACCGGCCGAAACCCGAAAACCCGAAACCC-ATAACCCGA
1 GAAACCCGAAACCCGTAAACCCGAA-A-C--CCG-AACCAG-AAACCCGAAACCCGAAAACCGGA
*
6473 AACCCG-AACCCGAAACCCGA-ACC-CGAAACCC--
60 AACCCGAAACCCGAAACCCGACACCGCGAACCCCGG
* * * * *
6504 GACACCGCGAAACCCCG-AAACCCCTAAACCCGAACACGGGAAACCC-AAACATCG-AAACCCGA
1 GAAACC-CGAAA-CCCGTAAA-CCCGAAACCCGAAC-C-AGAAACCCGAAAC-CCGAAAACCGGA
* * *
6566 AACCCGAAACCTC--AACACGAAACC-CGAAACCC--
60 AACCCGAAACC-CGAAACCCGACACCGCGAACCCCGG
* *
6598 GAAA-CCGAAAACCCGAGAAATCCCGGACACCCTGAAACC-GAAAGCCCGGAAACCCG-AAACC-
1 GAAACCCG-AAACCCG-TAAA-CCC-GAAACCC-G-AACCAGAAA-CCC-GAAACCCGAAAACCG
* * *
6659 GAAACGCGAAACCCGAAACCC-AAACC-CGAA-ACC--
58 GAAACCCGAAACCCGAAACCCGACACCGCGAACCCCGG
* * * * *
6692 GAATACCTCGAAATCCCGGCAAACCCGAAAACTCGAAAACCCGAAACCCGCAACCACGAACACCA
1 GAA-ACC-CGAAA-CCC-GTAAACCCG-AAACCCG--AACCAGAAACCCGAAACC-CGAAAACC-
* * *
6757 GGAAATCC-AAACCCGAACCCCCGAAACC-CGAACACCC--
57 GGAAACCCGAAACCCGAA-ACCCGACACCGCGAAC-CCCGG
* * * *
6794 GAAAACCGGAACCCG-AAACCCG-AACCCGAAACCCGAAATCCCGAAACCCG-AAACCCGAAACC
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AACCAGAAA-CCCGAAACCCGAAAACCGGAAACC
* * * *
6856 GGAAACCCGAACAACCTCGAAAATCCG-AAACCTC-G
64 CGAAACCCG-A-AACC-CG-ACA-CCGCGAACCCCGG
* * * *
6891 AAAACCCGAAACCCCG-AAATCCCGAAAAACCCTGAAACCGCGCCAA-CCGAAA-CCG-ATACAC
1 GAAACCCGAAA-CCCGTAAA-CCCG--AAACCC-G-AACC-AG-AAACCCGAAACCCGAAAAC-C
* ** *
6952 -GAAACCCGAAA-CCGATAACCCGGGATAAATGCGAA-CCCGA
57 GGAAACCCGAAACCCGA-AACCC--GA-CACCGCGAACCCCGG
*
6992 GAAACCCGAAA-CCGTGAAAATCCCGAAACCCGAA-C-GAAACCCGAAACCCGAAAACCCGAAAC
1 GAAACCCGAAACCCGT--AAA-CCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAAC
7054 CCGAAACCCGAAACCCGAACAACC-CGAACCCC-G
63 CCGAAACCCGAAACCCG-AC-ACCGCGAACCCCGG
* * ** *
7087 AAACCGACACCGAAACCC--AAACCCCGAAACCCGAA--A-ATACCCGAAACCCGAACCCCGAAA
1 GAA---AC-CCGAAACCCGTAAA-CCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAA
* * *
7147 ACCCGAAACCGCGAAACCCGAAACCCGTGAAACCC--
61 ACCCGAAACC-CGAAACCCGACA-CCGCGAACCCCGG
* *
7182 GAATACCCGAAATCCTCTGGAAAAGAACCCG-AACTTCCGCAAACCCGAAATCCCG-AACCCG-A
1 GAA-ACCCGAAA-CC-C--G--TA-AACCCGAAAC--CCG--AACCAGAAA-CCCGAAACCCGAA
* * *
7244 AACACGGAAACCC-AAACCGCTATA-CCGA-ACC-CGAAACCC--
53 AAC-CGGAAACCCGAAACC-CGAAACCCGACACCGCGAACCCCGG
* * * * *
7283 GAAACCCGAAAACCCG-ACA-CCGAAACCCGACACCCGAAACCCTGCATCCCGAAAACCCGAAAC
1 GAAACCCG-AAACCCGTAAACCCGAAACCCGA-ACCAGAAACCC-GAAACCCGAAAACCGGAAAC
*
7346 CCGAAA--CGAAACCCGAAACC-CGAAAACTCCC--
63 CCGAAACCCGAAACCCGACACCGCG--AAC-CCCGG
* * *
7377 GAAGACCCCGAAACCCG--AACCCGTAAACCCGAAACCCGCAAACTCCTGGGAAAACCGAAACCC
1 GAA-A-CCCGAAACCCGTAAACCCG-AAACCCG-AACCAG-AAAC-CC---GAAACCCGAAAACC
* * *
7440 GGAAACCCTGAAAACCCGAAAATCCCGAAACCCCGAAACCC--
57 GGAAACCC-G-AAACCCG-AAA-CCCGACACCGCGAACCCCGG
* * * *
7481 GAAACCGGAAACCAGCTAAACCCGAAACCCGAAACCCGGAAATACCCGAAA-CCGAAAACCACGA
1 GAAACCCGAAACCCG-TAAACCCGAAACCCG-AA-CCAG-AA-ACCCGAAACCCGAAAACC-GGA
* * * *
7545 AACCCGCAACCCGTAAACACGAATTTACC-CGCAA-CCCGAACC
60 AACCCGAAACCCG-AAACCCG-A--CACCGCG-AACCCCG---G
* * * *
7587 GAAACCCGAAACCCGCAACCCCAACGAAACCCCGAACC-GAAACCCGAAACCCG-AAACCCGACA
1 GAAACCCGAAACCCGTAA-ACC--CGAAA-CCCGAACCAGAAACCCGAAACCCGAAAACCGGAAA
* * * *
7650 -CCGAACCCCGCAACCAGAAAAACCGAC-AACTCCC--
62 CCCGAAACCCGAAACCCG--ACACCG-CGAAC-CCCGG
* * * * * ** *
7684 GAAATCACGAAACCCGGATAACCCGAAA--TG-CCCTGAAA-CCGAAA-CCGAACCCCTGAAACC
1 GAAA-CCCGAAACCCGTA-AACCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAACC
* * *
7744 CGAAACCCCG-AACCCGAAACCCCCGAACCCC-T
64 CGAAA-CCCGAAACCCGACA-CCGCGAACCCCGG
* * * * *
7776 GACACCCGAAACCCGAATAACCCTAAA-TC---CC-GAAACCTCGAAACCCGATAAGAGCCGAGC
1 GAAACCCGAAACCCGTA-AACCCGAAACCCGAACCAGAAACC-CGAAACCCGA-AA-A-CCG-GA
* * *
7836 TACCCGAAACGCCGAAACTCCGAAACC-CTGAAACCC--
60 AACCCGAAAC-CCGAAAC-CCGACACCGC-GAACCCCGG
** * * * *
7872 GAAACCCGAAACGGAGGAAACCC-AAACCCGAAACCCGAAAATCCCGTAATA-CCGAAACCCAGA
1 GAAACCCGAAAC-CCGTAAACCCGAAACCCG-AACCAG-AAA-CCCG-AA-ACCCGAAAACCGGA
* * * ** *
7935 AACCCGTACACCCG-AA-CCGA-A--ACTAAAACCGA
60 AACCCG-AAACCCGAAACCCGACACCGCGAACCCCGG
* * * *
7967 AAAACCCGATAACCCGAAAACTCCGCTCGAACACCCTGAAACCCGAAACCGCTGAAA-CCGAATA
1 GAAACCCGA-AACCCGTAAA---C-C-CGAA-ACCC-G-AACCAGAAACC-C-GAAACCCGAAAA
* * * * * * *
8031 CCCGAAACCCGAAACCCGGAACCCGATAAATACTCCCGTATCAACC-C
55 CCGGAAACCCGAAACCCGAAACCCG----ACAC-CGCG-AAC-CCCGG
* * * * ** **
8078 TAAATCCGAACCCCG-AAACCCGAAACCCGAACCCCGTAAACCCGAAACCTCGAACCCCGCCAAC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAA-CCAG-AAACCCGAAACC-CGAAAACCGGAAAC
* * *
8142 CCGAAACCCGATAACCCGGTAAACCG-TAAACCC-G
63 CCGAAACCCGA-AACCC-G-ACACCGCGAACCCCGG
* * * * *
8176 AAAACCCGAAA-CCG-ACACCCGAAAACCCGAAACCCGAAAAACCCGAAACCCGAAACTCCCGAA
1 GAAACCCGAAACCCGTAAACCCG-AAACCCG-AA-CC-AGAAACCCGAAACCCGAAA-ACCGGAA
* *
8239 ACCCGTAAAACCCCGCAACCCGAAACC-CGAA-CCC-G
61 ACCCG--AAA-CCCGAAACCCGACACCGCGAACCCCGG
* * *
8274 AAAACCCGAAACGAAACCCGTAAACCCTGAATACCCGAAACCCA-ACACCCG-AACCCGAAACCC
1 GAAA-CC----CGAAACCCGTAAACCC-GAA-ACCCG-AA-CCAGAAACCCGAAACCCGAAAACC
* * * * *
8337 TGGAACTCCCGAAA-CCGCAACCCG-CAAAC-CGAAACCCGA
57 -GGAA-ACCCGAAACCCGAAACCCGAC-ACCGCGAACCCCGG
* * * * * **
8376 AAAACCCGAAACCCG-CACCCCGGAAACGCCGAAAGCC-GCAACTCCTAAACCCGAAAACCCTAA
1 GAAACCCGAAACCCGTAAACCC-GAAAC-CCG-AA-CCAGAAAC-CCGAAACCCGAAAACCGGAA
* * *
8439 CCCCGAAACCCGGAAACCCGA-AAC-CGAAACCC-G
61 ACCCGAAACCC-GAAACCCGACACCGCGAACCCCGG
* *
8472 GAAACCCGAAACCCG-AAACCCGAAACCCGGAAAACC-GAAAACCC-AAATCCGAAAACCCGAAA
1 GAAACCCGAAACCCGTAAACCCGAAACCC-G--AACCAG-AAACCCGAAACCCGAAAACCGGAAA
* *
8534 CCTCGAAACCCGAAATCCGA-A-C-CGAAACCC--
62 CC-CGAAACCCGAAACCCGACACCGCGAACCCCGG
* * * * * *
8564 GAAACCCTAAAACCCTGAAAACCCGAAACCCGCCACCCGATAACCCGAAACCCGAAACCCTGAAA
1 GAAACCC-GAAACCC-GTAAACCCGAAACCCG-AACCAGA-AACCCGAAACCCGAAAACCGGAAA
* * *
8629 -CCGATACCCGAAAAACCGAAACC-CGAACCCCGAACCCG
62 CCCGAAACCCG-AAACCCGACACCGCGAACCCCG-----G
* * * * *
8667 GACATCCGAAACCCG-AAACCCGGATAACCCGAAAC-GAAACCCGAAACTCCGATAACCCGAAAA
1 GAAACCCGAAACCCGTAAACCC-GA-AACCCGAACCAGAAACCCGAAAC-CCGA-AAACCGGAAA
* * * **
8730 CCCGAAACCACAGAAAGCCGAAAAACCTCGAAAAACC--
62 CCCGAAACC-C-GAAACCCG--ACACCGCG-AACCCCGG
* *
8767 -AAACCCGAAACCCGTAAACCCGAAA-CCGTA--AG--A-CCGAAACCCG-AAACCCG-AACCCG
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAACCCG
* *
8823 TAACCCGATGGAACCCG-CAAC-CGAACCCAC--
66 AAACCCGA---AACCCGACACCGCGAACCC-CGG
* * * *
8853 GAAACCCGAAACCCG-AAACCCGAACCCCGAAAC-GAAATCCG-AACCCGCAGAAA-C-GAAAAC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAACCCGAAACCCG-A-AAACCGGAAACC
* * *
8913 CGAAA-CCGAAACCGGAAACC-CGAAACCC--
64 CGAAACCCGAAACCCGACACCGCGAACCCCGG
* *
8941 GAAACCCGAAACCC--AAACCCGAAACCCGCAACCCG-AA----AAACCCGAAAACCGTAAACCC
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AACCAGAAACCCGAAACCCGAAAACCGGAAACCC
* * *
8999 G-CACCCGTAAACCCTGAAAACC-CGAAACCC-G
65 GAAACCCG-AAACCC-G-ACACCGCGAACCCCGG
* * * * * *
9030 AAAACCTCGACACCTGGAAACCCGAAACCCG--CGA-AAACCCCGAAACTCCG-AAACCCGAAA-
1 GAAACC-CGAAACCCGTAAACCCGAAACCCGAACCAGAAA-CCCGAAAC-CCGAAAACCGGAAAC
* *
9090 -CGAAACCC-AAACCCTTTGAATACC-CGAAACCC-G
63 CCGAAACCCGAAACCC---G-ACACCGCGAACCCCGG
* * * * * *
9123 CATAACCCGAAACCC-TAAACCCGAAACCCGAAACCCGCAAATCCCGACACCTAGAACACCCGAA
1 GA-AACCCGAAACCCGTAAACCCGAAACCCG-AACCAG-AAA-CCCGAAACC-CGAAAACCGGAA
* *
9187 ACCCGCAACTCCG-ACCCCGA-ACC-CGAACCCC--
61 ACCCGAAAC-CCGAAACCCGACACCGCGAACCCCGG
* * *
9218 GAAACCCGACTAA-CCGCAAACACCG-AACCCGAAACCCGAAACCCGTACAA-CCGGAAACC-GA
1 GAAACCCGA--AACCCGTAAAC-CCGAAACCCG-AACCAGAAACCCG-A-AACCCGAAAACCGGA
* * *
9279 AACCCGAATAACCGAAACTCCGAACAAACC-CGAA-ACCGA
60 AACCCGAA-ACCCGAAAC-CCG-AC--ACCGCGAACCCCGG
* * *
9318 GAAACCCGAAACCCGTAAACCCG-AACACGAAACCCGAAACCCGAAACCCG-AAACCCGAACACC
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AACCAGAAACCCGAAACCCGAAAACCGGAA-ACC
*
9381 CGAAACCCGAAA-CCGACAACC-CGTAAACCCGACACGC
64 CGAAACCCGAAACCCGAC-ACCGCG--AA-CC--C-CGG
*
9418 GAAACCCGAAA-CCG-AAACCCGAAACCCG--CC-G-AACCCGAAA-CCG--AACC-GAAACCTG
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAACC-C
*
9473 GAAACCCGAAA-CCGAAAACTC-CGAAACCCC--
65 GAAACCCGAAACCCG-ACAC-CGCG-AACCCCGG
* * * * **
9503 GATAACCCG-AACCC--AAACCCGATAACCCGAAAACTCCGCAACCCGAAACCCGGACACCCTAA
1 GA-AACCCGAAACCCGTAAACCCGA-AACCCG--AAC-CAGAAACCCGAAACCCGAAAACCGGAA
*
9565 ACCCGAAATACCCGAAACCCGGAAACCGC-AA-CCC-G
61 ACCCG-AA-ACCCGAAACCC-GACACCGCGAACCCCGG
* * *
9600 AAAACCCGAAACCC-TCGAATACCCGAAAAAACCC---CGAGAAACCCGAAACCTCGAAACCCGG
1 GAAACCCGAAACCCGT--AA-ACCCG---AAACCCGAACCAGAAACCCGAAACC-CGAAAACCGG
* * *
9661 AGTACCTCGACAACCCGTAAACCCGAAACC-CGAAAGCCTCGG
59 A-AACC-CGA-AACCCG-AAACCCGACACCGCG-AA-CCCCGG
9703 AACGAAA--CGAAACCC-TGAAACCCGAAACCTCGCACACC-GAAA-CCGAAACCCG-AAACCGG
1 ---GAAACCCGAAACCCGT-AAACCCGAAACC-CG-A-ACCAGAAACCCGAAACCCGAAAACCGG
* *
9762 AAATCCCCGAAACCCG-AA----ATA-CG-GAAACCC-G
59 AAA--CCCGAAACCCGAAACCCGACACCGCGAACCCCGG
* * * *
9793 GAAACCTCGAATCCCG-AAATCCCGAAACCCGGAAACCCGGAAACCCG-AACCTCTAAACCTCGG
1 GAAACC-CGAAACCCGTAAA-CCCGAAACCC-G-AA-CCAGAAACCCGAAACC-CGAAAAC-CGG
* * * * *
9856 AAACCCGATAATCCGCAACCCGATAACC-CGAAACCCGA
59 AAACCCGA-AACCCGAAACCCGA-CACCGCGAACCCCGG
* * * * *
9894 GAAACCCGCAAATCCG-AAACCCGAAACCCG---TAGAATCCCG-AACCCGGATAACCCTGTAAA
1 GAAACCCG-AAACCCGTAAACCCGAAACCCGAACCAGAAACCCGAAACCC-GA-AAACC-GGAAA
* * *
9954 -CCGAATACCTG-AA-CCGAAACCGCGAAACCC-G
62 CCCGAA-ACCCGAAACCCGACACCGCGAACCCCGG
* * *
9985 GCAACCCGAAACCCGGAAACCCGAAACCCGAACCCCGAAA-CCGAAACCCG--AACC-GAAACCC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAA-CCAGAAACCCGAAACCCGAAAACCGGAAACCC
* *
10046 GAAA-CCGAAA-CCGAAACCGAAACCGAA-ACC--
65 GAAACCCGAAACCCGACACCG----CGAACCCCGG
* *
10076 GAAA-CCGACAACCCG-AAACCCTAAAACCCGAAACCCG-AACCCGAAACCCGAAAACC-G-AAC
1 GAAACCCGA-AACCCGTAAACCC-GAAACCCG-AACCAGAAACCCGAAACCCGAAAACCGGAAAC
* *
10136 CCGAAATCCCGAAACCCGAAACC-CGAAACCC--
63 CCGAAA-CCCGAAACCCGACACCGCGAACCCCGG
* * *
10167 GAAACCCG-AACCCG-AAACCCGTAAACCCGAAACCCGTAACCCCGAAACCCG-AAACCCGATTA
1 GAAACCCGAAACCCGTAAACCCG-AAACCCG-AACCAG-AAACCCGAAACCCGAAAACCGGA--A
* * *
10229 ACCCGAAAACCCG-TACCCGGACAACCCCGAAACCC-G
61 ACCCG-AAACCCGAAACCC-GAC-ACCGCGAACCCCGG
* * * **
10265 GAAACCCCGAAACCCCG--AACCCGAAACCCGAAACTCCGAAACCCGATA-CCGAAACCCGCTAA
1 GAAA-CCCGAAA-CCCGTAAACCCGAAACCCG-AAC-CAGAAACCCGAAACCCGAAAACCGGAAA
* *
10327 CCCGAAATCCCGAAAACCCGA-ACCCCGAAACCC--
62 CCCGAAA-CCCG-AAACCCGACACCGCGAACCCCGG
* * * *
10360 GAAACCCGAAACCCGATAATCCCGAAACCCGAAACCGGAAACCCGCAAAACCCG-GAACCCGAAA
1 GAAACCCGAAACCCG-TAAACCCGAAACCCG-AACCAGAAACCCG--AAACCCGAAAACCGGAAA
10424 CCCGAAAACCCGAAAACCCG-CAACC-CGAA-CCC--
62 CCCG-AAACCCG-AAACCCGAC-ACCGCGAACCCCGG
* * *
10456 GAAACCCGAAACCCGAATAATCTCCGAAACCCGAAACCCGAATGACGCCGAACACCCGATCAACC
1 GAAACCCGAAACCCG--TAAAC-CCGAAACCCG-AACCAGAA--AC-CCGAA-ACCCGA--AAAC
* * *
10521 CGAAAACCCGGAAA-CCGAAACCCGAAACC-CGGAAACCC--
56 CGGAAACCC-GAAACCCGAAACCCGACACCGC-GAACCCCGG
* * * *
10559 GAAACCCGTAAACCCGTAAACCCGCAACCCGAAACCCG-AACCCTGAAACCCG-AACCCCGAAA-
1 GAAACCCG-AAACCCGTAAACCCGAAACCCG-AACCAGAAACCC-GAAACCCGAAAACCGGAAAC
* ****
10621 CCGAAACCCTGAAACCCG-CAACC-CGCAAACGAAA
63 CCGAAACCC-GAAACCCGAC-ACCGCG-AACCCCGG
* * * *
10655 CAAATCCGAAACCCG-AGGAA--C-AAACCCGAACACCGGAAACCCGGAAACCCG-AAACCAG-A
1 GAAACCCGAAACCCGTA--AACCCGAAACCCG-A-ACCAGAAACCC-GAAACCCGAAAACCGGAA
* *
10714 A-CCGAAA-CCGAATACCCGAAAAACC-CGACATCCCGG
61 ACCCGAAACCCGAA-ACCCG--ACACCGCGA-ACCCCGG
* * * * * ** *
10750 TAAACCCGAAACCCG-AACACCCGAACCCCG---TA-ATACCCGAACCCCCGAACCCTCCGAAA-
1 GAAACCCGAAACCCGTAA-ACCCGAAACCCGAACCAGAAACCCGAA-ACCCGAAAAC-CGGAAAC
* *
10809 CCGAAACCCGAAACCCGAAACC-CGAAACCC--
63 CCGAAACCCGAAACCCGACACCGCGAACCCCGG
* * * **
10839 GAAA-CCGAAACCCG-CACCCCGAACATCCCGAAACTCCGAAACCCGCGAAACCCG-AAACCCTA
1 GAAACCCGAAACCCGTAAACCCGAA-A-CCCG-AAC-CAGAAA-CC-CGAAACCCGAAAACCGGA
*
10901 AACCCGAAA-CCGATATAACCGA-ACC-CGAA-CCC--
60 AACCCGAAACCCGA-A-ACCCGACACCGCGAACCCCGG
** ** * *
10933 GAAACCCGAAACCCG--AACCCGAAACGAGAACCCTAAACCCGAAAACCCG-AAACCCGACACCC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAACCCG-AAACCCGAAAACCGGAAACCC
* *
10995 TTGATAACTCCGAAA-CCGA-AAC-CGAAACCC--
65 --GA-AAC-CCGAAACCCGACACCGCGAACCCCGG
* * *
11025 GAAACCCGAAACCCG-AAAACCGAAACCCGAACC-GAAACCCCGAATACCCG-AACCCGAAACAC
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAA-CCCGAA-ACCCGAAAACCGGAA-AC
* *
11087 CCGAGAAACCCGAAACCCGTA-AAC-CGAAACCC-G
63 CC--GAAACCCGAAACCCG-ACACCGCGAACCCCGG
* * * * * *
11120 GAAACCCG-AACCCGACGAACACCCGAAATCCGAACCCGAAATCCAGACACCCG-AAACTCCGAA
1 GAAACCCGAAACCCG--TAA-ACCCGAAACCCGAACCAGAAA-CCCGAAACCCGAAAAC-CGGAA
* *
11183 ACCCGACACACCCGAAA-CCGAAACC-CGTAAACCC--
61 ACCCGA-A-ACCCGAAACCCGACACCGCG-AACCCCGG
* * * * * *
11217 GAAA-CCGAAACCCG-AAATCCAGTCTAACCCG---GAGAACCCCGAAACCCCGAAACCCCG-AA
1 GAAACCCGAAACCCGTAAA-CCCG--AAACCCGAACCAGAAACCCGAAA-CCCGAAAACCGGAAA
*
11276 CCCGAAACCCGAAAACCG-CACC-CGGATACCCC--
62 CCCGAAACCCGAAACCCGACACCGC-GA-ACCCCGG
* * * *
11308 GAATACCCGATAACCCTCGAAACACCCGAACCCCGAAACCCG-AACCCGAAACCCG-AAACCTCG
1 GAA-ACCCGA-AA-CC-CGTAA-ACCCGAAACCCG-AACCAGAAACCCGAAACCCGAAAACC-GG
* *
11371 AAACCCGAAACCCCGAAA-CCGA-AAC-CGTACACCC--
59 AAACCCGAAA-CCCGAAACCCGACACCGCGAAC-CCCGG
* * *
11405 GAAACCCGCAACCCGTAAACCCGAAACCCGAACCCGAATACCCGCAACCCGAAATACCCGATTTG
1 GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAA-ACCCGAAACCCGAAA-A-CCG----G
* * *
11470 AAACTCCGAGAAACCCGGAAAACCG--ACC-CTAAACCC--
59 AAAC-CC--GAAACCC-GAAACCCGACACCGCGAACCCCGG
* * * *
11506 GAAACCCGAAACCCG--AACCAGAAA-CCGAAACCCGAAAACCCGAACCCCGAAAACCCGAAACC
1 GAAACCCGAAACCCGTAAACCCGAAACCCG-AACCAG-AAACCCGAAACCCGAAAACCGGAAACC
* * *
11568 CGAAACCCGAACCCCGCGAAACC-CGAAACCCCGA
64 CGAAACCCGAA-ACC-CGACACCGCG-AACCCCGG
* *
11602 TAAA-CCGAAACCCG-AAACCCCGAAACCCGAATATCC-GTAAA-CCGAAACCCG--AACCCGAA
1 GAAACCCGAAACCCGTAAA-CCCGAAACCCG-A-A-CCAG-AAACCCGAAACCCGAAAACCGGAA
* *
11661 ACCCGAAACCCGAAAACCAGAAACC-CGAAACTTCCC--
61 ACCCGAAACCCG-AAACCCGACACCGCG-AAC--CCCGG
* * * *
11697 GAAA-CCGAAACCCG-AAACCCGACAACCCGAATAACCCG-AACCCTAACCCCG-AAACCCG-AA
1 GAAACCCGAAACCCGTAAACCCGA-AACCCG---AACCAGAAACCCGAAACCCGAAAACCGGAAA
*
11757 CCC-AGAACCCGAAACCCGAATACC-CGAAACCCC-G
62 CCCGA-AACCCGAAACCCG-ACACCGCG-AACCCCGG
* * * *
11791 AAAACCCGAAACCC-TGAAACCCGAAA-CCGTAAACCCGAAACCCCGCAACCCTG-AAACCCGAA
1 GAAACCCGAAACCCGT-AAACCCGAAACCCG--AACCAGAAA-CCCGAAACCC-GAAAACCGGAA
*
11853 ACCCGGAAACCCGAAACCCAGA-ACC-CGAAAACCC--
61 ACCC-GAAACCCGAAACCC-GACACCGCG-AACCCCGG
* * *
11887 GAAACCCCG-AACTCCG-AAACCCGCAACCCGAAACCCGAAACCCGAAACCCGAATACCGAGAAA
1 GAAA-CCCGAAAC-CCGTAAACCCGAAACCCG-AACCAGAAACCCGAAACCCGAAAACCG-GAAA
* *
11950 CCCGAACCTCCGAAACCCG--ACC-CGAAACCC-G
62 CCCGAAAC-CCGAAACCCGACACCGCGAACCCCGG
* * * *
11981 AAAATCCCGAAACCCGAAAACCTGAAA-CCGAAACCCGAAACCC-AAACCC-AAAACC
1 GAAA-CCCGAAACCCGTAAACCCGAAACCCG-AACCAGAAACCCGAAACCCGAAAACC
12036 CCAAAACCTC
Statistics
Matches: 9004, Mismatches: 1052, Indels: 2729
0.70 0.08 0.21
Matches are distributed among these distances:
80 15 0.00
81 3 0.00
82 1 0.00
83 4 0.00
84 34 0.00
85 47 0.01
86 57 0.01
87 82 0.01
88 127 0.01
89 183 0.02
90 299 0.03
91 471 0.05
92 459 0.05
93 610 0.07
94 699 0.08
95 854 0.09
96 786 0.09
97 718 0.08
98 707 0.08
99 626 0.07
100 544 0.06
101 395 0.04
102 338 0.04
103 301 0.03
104 209 0.02
105 173 0.02
106 166 0.02
107 52 0.01
108 18 0.00
109 9 0.00
110 6 0.00
111 8 0.00
112 3 0.00
ACGTcount: A:0.40, C:0.40, G:0.15, T:0.05
Consensus pattern (95 bp):
GAAACCCGAAACCCGTAAACCCGAAACCCGAACCAGAAACCCGAAACCCGAAAACCGGAAACCCG
AAACCCGAAACCCGACACCGCGAACCCCGG
Found at i:823 original size:20 final size:20
Alignment explanation
Indices: 722--817 Score: 95
Period size: 22 Copynumber: 4.6 Consensus size: 20
712 GAAACCGGAA
* *
722 ACCCGTAAACCCGAAACCCGA
1 ACCCGAAAACCCGAAA-CCGC
*
743 ACCCG-AAACCCGAAACCCGAA
1 ACCCGAAAACCCGAAA-CCG-C
* *
764 ACCCGGAAACCCGAAACCCGAA
1 ACCCGAAAACCCGAAA-CCG-C
786 ACCCGAAAACCCGAAACCGC
1 ACCCGAAAACCCGAAACCGC
806 ACCCGAAAACCC
1 ACCCGAAAACCC
818 ATAACCCGAA
Statistics
Matches: 71, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
20 26 0.37
21 14 0.20
22 31 0.44
ACGTcount: A:0.41, C:0.44, G:0.15, T:0.01
Consensus pattern (20 bp):
ACCCGAAAACCCGAAACCGC
Found at i:1503 original size:9 final size:9
Alignment explanation
Indices: 1489--1513 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1479 CCGAAACCCG
1489 AAACCCGGA
1 AAACCCGGA
1498 AAACCCGGA
1 AAACCCGGA
1507 AAACCCG
1 AAACCCG
1514 CACGAACCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.36, G:0.20, T:0.00
Consensus pattern (9 bp):
AAACCCGGA
Found at i:1794 original size:141 final size:139
Alignment explanation
Indices: 1539--1899 Score: 340
Period size: 141 Copynumber: 2.6 Consensus size: 139
1529 CGAACCCGTA
*
1539 AACCCGAAACCGAAACCCGGGAAAACCCGAACCCGAAACCCGAAACCCGAAACCCGAAACCCGGA
1 AACCCGAAACCGAAACCC-GGAAAACCCAAACCCGAAACCCGAAACCCGAAACCCGAAACCCGGA
* *
1604 AACCCGAACCACCCGAACATCCCGAGATACCCGGAAACCGAAATTCCGAAACTCCACAACCCAGA
65 AACCCGAA-CACCCGAACATCCCGAGATACCCGCAAACCGAAATCCCGAAACTCCACAACCCAGA
1669 ATAATAACCCG
129 ATAATAACCCG
*
1680 AACCCGAAACCCGAATACCC-GAAAACTCAAACCCGAAACCCGAAACCCGAAACCCGAATACCC-
1 AACCCGAAA-CCGAA-ACCCGGAAAACCCAAACCCGAAACCCGAAACCCGAAACCCGAA-ACCCG
* *
1743 GATAACCCGAA-ACCCGAAACCGATACCCGA-A-ACCCGCAACCCG-AATCCCGAAAC-CCGAAA
63 GA-AACCCGAACACCCG-AA-C-AT-CCCGAGATACCCGCAAACCGAAATCCCGAAACTCC--AC
*
1803 AACCC-G---GA-AACCCGG
121 AACCCAGAATAATAACCC-G
* * *
1818 AAACCTCGAAACCCCGAAACCC-GTAAACCCGAAACCCGCAA-CCGAGACCCGAAA-CCG-AACC
1 -AACC-CGAAA--CCGAAACCCGGAAAACCC-AAACCCGAAACCCGAAACCCGAAACCCGAAACC
*
1879 GGGAAACCCGTAACACCCGAA
61 CGGAAACCCG-AACACCCGAA
1900 ACTTCCGATA
Statistics
Matches: 190, Mismatches: 12, Indels: 39
0.79 0.05 0.16
Matches are distributed among these distances:
137 14 0.07
138 9 0.05
139 12 0.06
140 34 0.18
141 75 0.39
142 34 0.18
143 7 0.04
144 5 0.03
ACGTcount: A:0.40, C:0.40, G:0.16, T:0.04
Consensus pattern (139 bp):
AACCCGAAACCGAAACCCGGAAAACCCAAACCCGAAACCCGAAACCCGAAACCCGAAACCCGGAA
ACCCGAACACCCGAACATCCCGAGATACCCGCAAACCGAAATCCCGAAACTCCACAACCCAGAAT
AATAACCCG
Found at i:5068 original size:17 final size:18
Alignment explanation
Indices: 5038--5071 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
5028 CTCAACCCGA
5038 AACCCGACACCCGAAACG
1 AACCCGACACCCGAAACG
5056 AACCCGA-ACCCGAAAC
1 AACCCGACACCCGAAAC
5072 CCTGAAACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.41, C:0.44, G:0.15, T:0.00
Consensus pattern (18 bp):
AACCCGACACCCGAAACG
Found at i:7357 original size:12 final size:12
Alignment explanation
Indices: 7340--7364 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7330 CCCGAAAACC
7340 CGAAACCCGAAA
1 CGAAACCCGAAA
7352 CGAAACCCGAAA
1 CGAAACCCGAAA
7364 C
1 C
7365 CCGAAAACTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.36, G:0.16, T:0.00
Consensus pattern (12 bp):
CGAAACCCGAAA
Found at i:7619 original size:11 final size:13
Alignment explanation
Indices: 7579--7669 Score: 68
Period size: 13 Copynumber: 6.9 Consensus size: 13
7569 TTACCCGCAA
7579 CCCGAACCGAAA-
1 CCCGAACCGAAAC
*
7591 CCCGAAACCCGCAAC
1 CCCG-AA-CCGAAAC
7606 CCC-AA-CGAAAC
1 CCCGAACCGAAAC
7617 CCCGAACCGAAA-
1 CCCGAACCGAAAC
7629 CCCGAAACCCGAAA-
1 CCCG-AA-CCGAAAC
7643 CCCGACACCG-AAC
1 CCCGA-ACCGAAAC
7656 CCCGCAACCAGAAA
1 CCCG-AACC-GAAA
7670 AACCGACAAC
Statistics
Matches: 65, Mismatches: 2, Indels: 21
0.74 0.02 0.24
Matches are distributed among these distances:
11 8 0.12
12 12 0.18
13 22 0.34
14 18 0.28
15 5 0.08
ACGTcount: A:0.40, C:0.46, G:0.14, T:0.00
Consensus pattern (13 bp):
CCCGAACCGAAAC
Found at i:12144 original size:32 final size:32
Alignment explanation
Indices: 12060--12262 Score: 120
Period size: 32 Copynumber: 6.5 Consensus size: 32
12050 AAGCACCCCA
12060 AAACCCCAAACCCC-AA-ACCCAAC--CC-CC
1 AAACCCCAAACCCCAAATACCCAACAACCTCC
* *
12087 AAACCCCTACAACTCCCAAA-CCCCAACAGCC-CC
1 AAACCCC-A-AAC-CCCAAATACCCAACAACCTCC
12120 ACAA-CCCAAACCACCAAATACCCAACAACCTCC
1 A-AACCCCAAACC-CCAAATACCCAACAACCTCC
*
12153 AAACCCCAAACCCCAAA-CCCCACACCCAAACC-CC
1 AAACCCCAAACCCCAAATACCCA-A--C-AACCTCC
12187 AATAACCCCAAACCCCAAA-ACCCCAA-AACC-CC
1 -A-AACCCCAAACCCCAAATA-CCCAACAACCTCC
*
12219 TAA-CCCAAACCCC--A-ACCCTAA-AACC-CC
1 AAACCCCAAACCCCAAATACCC-AACAACCTCC
12246 AAACCCCAAACCCCAAA
1 AAACCCCAAACCCCAAA
12263 CCCCAAACCC
Statistics
Matches: 147, Mismatches: 7, Indels: 41
0.75 0.04 0.21
Matches are distributed among these distances:
26 3 0.02
27 19 0.13
28 11 0.07
29 13 0.09
30 7 0.05
31 20 0.14
32 24 0.16
33 19 0.13
34 5 0.03
35 5 0.03
36 17 0.12
37 4 0.03
ACGTcount: A:0.43, C:0.53, G:0.00, T:0.03
Consensus pattern (32 bp):
AAACCCCAAACCCCAAATACCCAACAACCTCC
Found at i:12208 original size:100 final size:93
Alignment explanation
Indices: 12054--13872 Score: 345
Period size: 96 Copynumber: 19.3 Consensus size: 93
12044 TCATATAAGC
* *
12054 ACCCCAAAACCCCAAACCCCAAACCCAACCCCCAAACCCCTACAACTCCCAAACCCCAACAGCCC
1 ACCCC-AAACCCCAAACCCCAAACCCAACCCCAAAACCCCTACAACTCCCAAACCCCAA-AACCC
12119 CACAACCCAAACCACCAAATACCC-AACAACCTCCAA
64 C-CAACCCAAACC-CC--A-ACCCTAA-AACC-CCAA
*
12155 ACCCCAAACCCCAAACCCCACACCCAAACCCCAATAACCCC-A-AAC-CCCAAAACCCCAAAACC
1 ACCCCAAACCCCAAACCCCAAACCC-AACCCCAA-AACCCCTACAACTCCC-AAACCCCAAAACC
*
12217 CCTAACCCAAACCCCAACCCTAAAACCCCAA
63 CCCAACCCAAACCCCAACCCTAAAACCCCAA
* *
12248 ACCCCAAACCCCAAACCCCAAA-CC--CCCC--AA-CCCGA-AAC-CCGAAA--CCAGAAA-CCC
1 ACCCCAAACCCCAAACCCCAAACCCAACCCCAAAACCCCTACAACTCCCAAACCCCA-AAACCCC
* * * *
12302 AAACCCGAAACCCGAAAACCCTAACA-CCCGA
65 CAACCC-AAACCC--CAACCCTAAAACCCCAA
* * * * ** * * *
12333 ACCCGGAAACCCGATATTAAACCCGAAACCCGA-TACAGAACCCGATAC--CCCCCAAACCCC-A
1 ACCC-CAAACCC-----CAAACCCCAAACCCAACCCCAAAACCC-CTACAACTCCCAAACCCCAA
* * *
12394 AACCATCAAACCCCAAACCCCAACCCCT-CAACCCCAAA
59 AACC-CCCAA-CCCAAACCCCAA-CCCTAAAACCCC-AA
* * * *
12432 ACACCAAACCCCAAAACCCTAAACCCAAACCCTC-AAACCCC-AAAACT-CCAAACCCCAACACC
1 ACCCCAAACCCC-AAACCCCAAACCC-AACCC-CAAAACCCCTACAACTCCCAAACCCCAAAACC
* *
12494 CCAAACCCAAACCCCAAACCC-CAAACCCCAA
63 CCCAACCCAAACCCC-AACCCTAAAACCCCAA
*
12525 ACCCCAAACCCCAAAAACCCCAAACCTCAAACCCCAAAA-CCC-A-AAC-CCCAAACCCCCAAA-
1 ACCCCAAACCCC--AAACCCCAAACC-C-AACCCCAAAACCCCTACAACTCCCAAACCCCAAAAC
* ** *
12585 -CCAAACCCCCAATACTCCCAAACCCGGAAACCCGAA
62 CCCCAA--CCCAA-AC-CCC-AACCCTAAAACCCCAA
* **** * ** *
12621 A-CCTAACACATTGAACCCCTAACCCGGATACACCC-CGA-CCCT-CAA--CCTAAA-CCC-AAA
1 ACCCCAA-ACCCCAAACCCCAAACCC--A-AC-CCCAAAACCCCTACAACTCCCAAACCCCAAAA
* ** ** * *
12678 CCCCGAACCCCGACCCCGAACTCCCGCAACCCCCGA
61 CCCCCAACCCAAACCCC-AA--CCCTAAAACCCCAA
* ** *
12714 ACCCC-GACCCCGAAACCGTAAATACCCCAAACCCCAAACCAACCCGTACAA-TCCCCAAAACCC
1 ACCCCAAACCCC-AAACC-CCAA-A-CCC-AACCCC-AA--AACCCCTACAACT-CCC-AAACCC
*
12777 TC-AAACCCCAAACCTCCAAAACCCCAACCC-ATAAACCCCAA
56 -CAAAACCCCCAA-C-CC-AAACCCCAACCCTA-AAACCCCAA
* * * ** * * *
12818 ATCCCAGACCCCAAACCCGAAACCCGGAAACCCGTAAACTCCGA-AAC-CCAAAACCCC-AAACC
1 ACCCCAAACCCCAAACCCCAAACCC---AACCCCAAAACCCCTACAACTCCCAAACCCCAAAACC
* *
12880 CCCAACCCCAAACAACCCAAACCCGAATACCCCAAA
63 CCCAA-CCCAAAC--CCC-AACCCTAAAACCCC-AA
* *
12916 ACCCCAAA-CCCAAACCCCAACCCCAAACTCCTCCAAA-CCC-A-AAC-CCCAAACCCC-AAACC
1 ACCCCAAACCCCAAACCCCAAACCC-AAC-CC-CAAAACCCCTACAACTCCCAAACCCCAAAACC
*
12975 CCAAACCCCAAACCCCAAACCCCTAAATACCCCTAA
63 CCCAA-CCCAAACCCC-AA-CCCTAAA-ACCCC-AA
13011 ACCCCTTAAACCCCAAACCCC-AACCCAA-CCC-AAACCCC-A-AAC-CCCAAAATCCCC-AAAC
1 ACCCC--AAACCCCAAACCCCAAACCCAACCCCAAAACCCCTACAACTCCC-AAA-CCCCAAAAC
* *
13069 CCCAATACCCGAAACCCCAAACCC-CAAACCAACCAA
62 CCCCA-ACCC-AAACCCC-AACCCTAAAACC--CCAA
* * * * * *
13105 ACCCCAAA-CCCAAACCCGAAACCGAAACCCAGAAA-CCCGA-AA--CCGAAACCCGAACCTAAA
1 ACCCCAAACCCCAAACCCCAAACCCAACCCCA-AAACCCCTACAACTCCCAAA-CC---CCAAAA
** * * *
13165 CCCGAAACCGAAACCCGAAAACCCTAAAA-CCCGA
61 CCCCCAACCCAAACCC--CAACCCTAAAACCCCAA
* * * **
13199 ACCCGAAACCCTGAAACCCCTAAACCCCAAACCC--AACCCC--CAAAACCC-AACCCCAAAACC
1 ACCCCAAACCC-CAAACCCC-AAA-CCCAACCCCAAAACCCCTACAACTCCCAAACCCCAAAACC
** * *
13259 CTGAAACCCTGAATACCCTCAAACCC-AACTAAACCCGA
63 C-CCAACCC--AA-ACCC-C-AACCCTAA--AACCCCAA
** * * * * *
13297 ACCTAAAACCCTAAACCCCTATACCCGAAACCTC--AA-CCCTGA-AA--CCCTAA-CCCTAAAC
1 ACCCCAAACCCCAAACCCC-AAACCC--AACCCCAAAACCCCT-ACAACTCCCAAACCCCAAAAC
* * * * ** *
13355 CCCGACCCCGAACCCGCCGACCCCCGAAACCCCGA
62 CCCCAACCC-AAACC-CC-AACCCTAAAACCCCAA
* * ** *
13390 ACCCGAGACCCCTACGCGAAAACCAAACCCAAACCCC-AAA-CCC-A-AACCCCCAAACCCC-AA
1 ACCCCAAACCCC-A----AACCCCAAACCC-AACCCCAAAACCCCTACAACTCCCAAACCCCAAA
* *
13450 ACCCCAAACCCCAAACCCCAA-CC-ATAACCCCAA
60 ACCCCCAA-CCCAAACCCCAACCCTAAAACCCCAA
* *
13483 ACCCCAATA-CCCAAACCCCAAACCCTCAACCCTAGGACCCAGA-CCCTA-AAC-CCTAAACCCC
1 ACCCCAA-ACCCCAAACCCCAAA-CC-CAACCCCA--A---A-ACCCCTACAACTCCCAAACCCC
*
13544 -AAACCCCAAACCCCAAACCCCAACCC--AAACCCCAA
57 AAAACCCCCAA-CCCAAACCCCAACCCTAAAACCCCAA
* *
13579 ACTCCAAACCCCAAACCCCAAACCCAACCCC-AAA-CCCTA-AA--CCC-AACCCC-AAACCCCA
1 ACCCCAAACCCCAAACCCCAAACCCAACCCCAAAACCCCTACAACTCCCAAACCCCAAAACCCCC
*
13637 AACCCCAAACCCCAAACCC-CAAACCCCAA
66 AA-CCCAAACCCC-AACCCTAAAACCCCAA
* * * * *
13666 ACCCC-AACCCTAAACCCCAAACCCTAAACCCTAAA-CCCTA-AAC-CCTAAACCCC-GAACCCC
1 ACCCCAAACCCCAAACCCCAAACCC-AACCCCAAAACCCCTACAACTCCCAAACCCCAAAACCCC
* * ** *
13726 GAACCCCGAACCCCGAACCC-CGAACCCCGA
65 CAA-CCCAAACCCC-AACCCTAAAACCCCAA
* * * * * * *
13756 ACCCCGAACCCCGAACCTCGAACCCCGAACCCC-GAACCCC--GAAC-CCCGAACCCC-AAACCC
1 ACCCCAAACCCCAAACC-CCAAACCC-AACCCCAAAACCCCTACAACTCCCAAACCCCAAAACCC
* * *
13816 CAAACTCCTAAACTCCAAACCCT-TAACCCCAA
64 CCAAC-CC-AAAC-CCCAACCCTAAAACCCCAA
* *
13848 ACCTCAAACCCTAAACCCCAAACCC
1 ACCCCAAACCCCAAACCCCAAACCC
13873 TAAACCTTAA
Statistics
Matches: 1346, Mismatches: 196, Indels: 362
0.71 0.10 0.19
Matches are distributed among these distances:
83 11 0.01
84 9 0.01
85 41 0.03
86 48 0.04
87 26 0.02
88 18 0.01
89 13 0.01
90 44 0.03
91 67 0.05
92 72 0.05
93 149 0.11
94 133 0.10
95 167 0.12
96 173 0.13
97 133 0.10
98 88 0.07
99 31 0.02
100 39 0.03
101 18 0.01
102 11 0.01
103 10 0.01
104 29 0.02
105 7 0.01
106 4 0.00
107 5 0.00
ACGTcount: A:0.40, C:0.50, G:0.04, T:0.05
Consensus pattern (93 bp):
ACCCCAAACCCCAAACCCCAAACCCAACCCCAAAACCCCTACAACTCCCAAACCCCAAAACCCCC
AACCCAAACCCCAACCCTAAAACCCCAA
Found at i:13187 original size:46 final size:47
Alignment explanation
Indices: 13111--13205 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 47
13101 CCAAACCCCA
*
13111 AACCCAAACCCGAAACCGAAACCCAGAAACCC-GAAA-CCGAAACCCG
1 AACCCAAACCCGAAACCGAAACCCAGAAACCCTAAAACCCG-AACCCG
*
13157 AACCTAAACCCGAAACCGAAACCC-GAAAACCCTAAAACCCGAACCCG
1 AACCCAAACCCGAAACCGAAACCCAG-AAACCCTAAAACCCGAACCCG
13204 AA
1 AA
13206 ACCCTGAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
45 1 0.02
46 29 0.66
47 11 0.25
48 3 0.07
ACGTcount: A:0.46, C:0.40, G:0.12, T:0.02
Consensus pattern (47 bp):
AACCCAAACCCGAAACCGAAACCCAGAAACCCTAAAACCCGAACCCG
Found at i:14219 original size:7 final size:7
Alignment explanation
Indices: 14219--14279 Score: 68
Period size: 7 Copynumber: 8.6 Consensus size: 7
14209 CCGAACCCCG
*
14219 ACCCCTA
1 ACCCCAA
*
14226 ACTCCAA
1 ACCCCAA
*
14233 ACCCTCCA
1 ACCC-CAA
14241 ACCCCAA
1 ACCCCAA
*
14248 ACCTCAA
1 ACCCCAA
14255 ACCCCAA
1 ACCCCAA
14262 ACCCCAA
1 ACCCCAA
*
14269 ACCTCAA
1 ACCCCAA
14276 ACCC
1 ACCC
14280 TAAATCTTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
7 38 0.86
8 6 0.14
ACGTcount: A:0.38, C:0.54, G:0.00, T:0.08
Consensus pattern (7 bp):
ACCCCAA
Found at i:14290 original size:7 final size:7
Alignment explanation
Indices: 14280--14309 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
14270 CCTCAAACCC
14280 TAAATCT
1 TAAATCT
*
14287 TAAATCC
1 TAAATCT
14294 TAAATCT
1 TAAATCT
14301 TAAATCT
1 TAAATCT
14308 TA
1 TA
14310 GATCGCAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (7 bp):
TAAATCT
Found at i:14295 original size:14 final size:14
Alignment explanation
Indices: 14278--14306 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14268 AACCTCAAAC
14278 CCTAAATCTTAAAT
1 CCTAAATCTTAAAT
14292 CCTAAATCTTAAAT
1 CCTAAATCTTAAAT
14306 C
1 C
14307 TTAGATCGCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.34
Consensus pattern (14 bp):
CCTAAATCTTAAAT
Found at i:14773 original size:22 final size:23
Alignment explanation
Indices: 14739--14783 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
14729 TTAAAATTAA
* * *
14739 AATTTTATTTTTTTAATTATTTT
1 AATTTTATATTTTAAATAATTTT
14762 AATTTTA-ATTTTAAATAATTTT
1 AATTTTATATTTTAAATAATTTT
14784 TTTAAAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
AATTTTATATTTTAAATAATTTT
Found at i:16218 original size:24 final size:25
Alignment explanation
Indices: 16191--16241 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
16181 TTTGTTAAGG
16191 ATTCTAAATGA-TTAACTTCTTTAA
1 ATTCTAAATGATTTAACTTCTTTAA
*
16215 ATTCTAAATGATTTAACTTTTTTAA
1 ATTCTAAATGATTTAACTTCTTTAA
16240 AT
1 AT
16242 CATTAACTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 11 0.44
25 14 0.56
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.49
Consensus pattern (25 bp):
ATTCTAAATGATTTAACTTCTTTAA
Found at i:19325 original size:6 final size:6
Alignment explanation
Indices: 19314--19348 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
19304 AATTAAAAGA
*
19314 GAGAGG GAGAGG GAGATG GAGAGG GAGAGG GAGAG
1 GAGAGG GAGAGG GAGAGG GAGAGG GAGAGG GAGAG
19349 AGAATACTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.63, T:0.03
Consensus pattern (6 bp):
GAGAGG
Found at i:25274 original size:14 final size:12
Alignment explanation
Indices: 25254--25380 Score: 69
Period size: 14 Copynumber: 9.3 Consensus size: 12
25244 AACTCTTTTT
25254 TTTTTTTTTTGC
1 TTTTTTTTTTGC
*
25266 TTTGCTTTTTTTAATC
1 TTT--TTTTTTT--GC
25282 TTTTTTTTTTGC
1 TTTTTTTTTTGC
25294 TTTTTTGTATTTGC
1 TTTTTT-T-TTTGC
*
25308 TTTGTTTTTTTTATC
1 -TT-TTTTTTTT-GC
25323 TTTTTTTTGGCTT-C
1 TTTTTTTT---TTGC
25337 TTTTTTTTTTTGC
1 -TTTTTTTTTTGC
25350 TTTTTTGTTTTTGC
1 -TTTTT-TTTTTGC
25364 TTTGTTTATTTT-C
1 TTT-TTT-TTTTGC
25377 TTTT
1 TTTT
25381 AGATCTTAGG
Statistics
Matches: 95, Mismatches: 3, Indels: 34
0.72 0.02 0.26
Matches are distributed among these distances:
12 13 0.14
13 22 0.23
14 38 0.40
15 12 0.13
16 10 0.11
ACGTcount: A:0.04, C:0.09, G:0.09, T:0.78
Consensus pattern (12 bp):
TTTTTTTTTTGC
Found at i:25316 original size:56 final size:54
Alignment explanation
Indices: 25271--25380 Score: 145
Period size: 56 Copynumber: 2.1 Consensus size: 54
25261 TTTGCTTTGC
25271 TTTTTTT--AATC-TTTTTTTTTTGCTTTTTTGTATTTGCTTTGTTTTTTTTATCT
1 TTTTTTTGGAATCTTTTTTTTTTTGCTTTTTTGTATTTGCTTTG-TTTTTTT-TCT
** * *
25324 TTTTTTTGGCTTCTTTTTTTTTTTGCTTTTTTGTTTTTGCTTTGTTTATTTTCT
1 TTTTTTTGGAATCTTTTTTTTTTTGCTTTTTTGTATTTGCTTTGTTTTTTTTCT
25378 TTT
1 TTT
25381 AGATCTTAGG
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
53 7 0.14
54 6 0.12
55 8 0.16
56 29 0.58
ACGTcount: A:0.05, C:0.08, G:0.09, T:0.78
Consensus pattern (54 bp):
TTTTTTTGGAATCTTTTTTTTTTTGCTTTTTTGTATTTGCTTTGTTTTTTTTCT
Found at i:25331 original size:25 final size:27
Alignment explanation
Indices: 25280--25355 Score: 77
Period size: 26 Copynumber: 2.8 Consensus size: 27
25270 CTTTTTTTAA
*
25280 TCTTTTTTTTT-TGCTTTTTTGTATTTGCT
1 TCTTTTTTTTTATGC-TTTTT-T-TTGGCT
25309 T-TGTTTTTTTTAT-CTTTTTTTTGGCT
1 TCT-TTTTTTTTATGCTTTTTTTTGGCT
*
25335 TCTTTTTTTTTTTGCTTTTTT
1 TCTTTTTTTTTATGCTTTTTT
25356 GTTTTTGCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
26 15 0.37
27 9 0.22
28 6 0.15
29 10 0.24
30 1 0.02
ACGTcount: A:0.03, C:0.09, G:0.09, T:0.79
Consensus pattern (27 bp):
TCTTTTTTTTTATGCTTTTTTTTGGCT
Found at i:25341 original size:42 final size:41
Alignment explanation
Indices: 25252--25340 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 41
25242 TTAACTCTTT
* * * *
25252 TTTTTTTTTTTTGCTTTGCTTTTTTTAATCTTTTTTTTTTGC
1 TTTTTTGTATTTGCTTTG-TTTTTTTTATCTTTTTTTTTGGC
25294 TTTTTTGTATTTGCTTTGTTTTTTTTATC-TTTTTTTTGGC
1 TTTTTTGTATTTGCTTTGTTTTTTTTATCTTTTTTTTTGGC
25334 TTCTTTT
1 TT-TTTT
25341 TTTTTTTGCT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
40 12 0.29
41 14 0.33
42 16 0.38
ACGTcount: A:0.04, C:0.09, G:0.09, T:0.78
Consensus pattern (41 bp):
TTTTTTGTATTTGCTTTGTTTTTTTTATCTTTTTTTTTGGC
Found at i:25344 original size:16 final size:15
Alignment explanation
Indices: 25323--25366 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
25313 TTTTTTTATC
25323 TTTTTTTTGGCTTCTT
1 TTTTTTTTGGCTT-TT
*
25339 TTTTTTTTTGCTTTT
1 TTTTTTTTGGCTTTT
*
25354 TTGTTTTT-GCTTT
1 TTTTTTTTGGCTTT
25367 GTTTATTTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 5 0.19
15 9 0.35
16 12 0.46
ACGTcount: A:0.00, C:0.09, G:0.11, T:0.80
Consensus pattern (15 bp):
TTTTTTTTGGCTTTT
Found at i:25349 original size:42 final size:40
Alignment explanation
Indices: 25253--25361 Score: 132
Period size: 41 Copynumber: 2.6 Consensus size: 40
25243 TAACTCTTTT
*
25253 TTTTTTTTTTTGCTTTGCTTTTTTTAATCTTTTTTTTTTGC
1 TTTTTTTTTTTGCTTTG-TTTTTTTTATCTTTTTTTTTTGC
*
25294 TTTTTTGTATTTGCTTTGTTTTTTTTATCTTTTTTTTGGCTT-C
1 TTTTTT-TTTTTGCTTTGTTTTTTTTATCTTTTTTTT---TTGC
25337 TTTTTTTTTTTGCTTT-TTTGTTTTT
1 TTTTTTTTTTTGCTTTGTTT-TTTTT
25362 GCTTTGTTTA
Statistics
Matches: 60, Mismatches: 3, Indels: 9
0.83 0.04 0.12
Matches are distributed among these distances:
41 27 0.45
42 24 0.40
43 7 0.12
44 2 0.03
ACGTcount: A:0.04, C:0.08, G:0.09, T:0.79
Consensus pattern (40 bp):
TTTTTTTTTTTGCTTTGTTTTTTTTATCTTTTTTTTTTGC
Found at i:26267 original size:30 final size:30
Alignment explanation
Indices: 26233--26325 Score: 123
Period size: 30 Copynumber: 3.1 Consensus size: 30
26223 ATTAATTTAA
* * *
26233 ATCCCTTAAATTAAGGACTAGTGTATCACT
1 ATCCCTTAGATTAAGGACTAGTGCACCACT
* *
26263 ATCCCTTAGATTAAGGACTAGTACGCCACT
1 ATCCCTTAGATTAAGGACTAGTGCACCACT
* *
26293 ATCCCTTAGATTAAAGATTAGTGCACCACT
1 ATCCCTTAGATTAAGGACTAGTGCACCACT
26323 ATC
1 ATC
26326 TAATTTAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (30 bp):
ATCCCTTAGATTAAGGACTAGTGCACCACT
Found at i:32568 original size:14 final size:14
Alignment explanation
Indices: 32546--32579 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
32536 CCTTAGCCTT
* *
32546 AAACCCTAAACCTC
1 AAACTCTAAACCCC
32560 AAACTCTAAACCCC
1 AAACTCTAAACCCC
32574 AAACTC
1 AAACTC
32580 CATCCCTAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.41, G:0.00, T:0.15
Consensus pattern (14 bp):
AAACTCTAAACCCC
Found at i:32660 original size:21 final size:21
Alignment explanation
Indices: 32625--32679 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
32615 AACTCAAATC
*
32625 CCTAAA-CCTTAACCTTAACT
1 CCTAAACCCTAAACCTTAACT
32645 CCT-AACCCTCAAACCTTAACT
1 CCTAAACCCT-AAACCTTAACT
32666 CCTAAACCCTAAAC
1 CCTAAACCCTAAAC
32680 TCTGATCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
19 2 0.06
20 6 0.19
21 17 0.55
22 6 0.19
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (21 bp):
CCTAAACCCTAAACCTTAACT
Found at i:32672 original size:14 final size:13
Alignment explanation
Indices: 32594--32673 Score: 56
Period size: 14 Copynumber: 5.8 Consensus size: 13
32584 CCTAGCCCCA
32594 AACCCTAAACCTT
1 AACCCTAAACCTT
* *
32607 AACCTTTAAA-CTCA
1 AACC-CTAAACCT-T
32621 AATCCCTAAACCTT
1 AA-CCCTAAACCTT
* *
32635 AA-CCTTAACTCCT
1 AACCCTAAAC-CTT
32648 AACCCTCAAACCTT
1 AACCCT-AAACCTT
32662 AACTCCTAAACC
1 AAC-CCTAAACC
32674 CTAAACTCTG
Statistics
Matches: 51, Mismatches: 8, Indels: 15
0.69 0.11 0.20
Matches are distributed among these distances:
12 6 0.12
13 10 0.20
14 25 0.49
15 10 0.20
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (13 bp):
AACCCTAAACCTT
Found at i:32923 original size:21 final size:20
Alignment explanation
Indices: 32899--32944 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
32889 ACCTTAATCT
*
32899 CTAAACCCAAGACCTCAAACC
1 CTAAACACAA-ACCTCAAACC
*
32920 CTAAACACAATCCTCAAACC
1 CTAAACACAAACCTCAAACC
32940 CTAAA
1 CTAAA
32945 AAACCCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.46, C:0.39, G:0.02, T:0.13
Consensus pattern (20 bp):
CTAAACACAAACCTCAAACC
Found at i:34901 original size:12 final size:12
Alignment explanation
Indices: 34884--34908 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34874 TAAAATCAGT
34884 ACTTCTTATTTA
1 ACTTCTTATTTA
34896 ACTTCTTATTTA
1 ACTTCTTATTTA
34908 A
1 A
34909 TAATATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (12 bp):
ACTTCTTATTTA
Found at i:42796 original size:2 final size:2
Alignment explanation
Indices: 42789--42828 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
42779 TTCCATGTAC
42789 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
42829 GAAATAACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:42969 original size:2 final size:2
Alignment explanation
Indices: 42962--42991 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
42952 GAATCTAATG
42962 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
42992 GAATCCAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:43426 original size:4 final size:4
Alignment explanation
Indices: 43417--43442 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
43407 TCAATTGTTG
43417 TTGC TTGC TTGC TTGC TTGC TTGC TT
1 TTGC TTGC TTGC TTGC TTGC TTGC TT
43443 ACTAGTATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.23, T:0.54
Consensus pattern (4 bp):
TTGC
Found at i:43815 original size:4 final size:4
Alignment explanation
Indices: 43806--43833 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
43796 ACTTTTTCAT
43806 ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC
43834 CCACCTACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:50079 original size:31 final size:31
Alignment explanation
Indices: 50043--50228 Score: 229
Period size: 31 Copynumber: 6.0 Consensus size: 31
50033 GGTTTCAAAC
50043 CGTGCCACCGATTAAGAATAGTAGTTTTTGT
1 CGTGCCACCGATTAAGAATAGTAGTTTTTGT
50074 CGTGCCACCGATTAAGAATAGTAGTTTTTGT
1 CGTGCCACCGATTAAGAATAGTAGTTTTTGT
* *
50105 CGTGCCACCGATTAAAAATAGTAGTTTTCGT
1 CGTGCCACCGATTAAGAATAGTAGTTTTTGT
*
50136 CGTGCCACCGGA-TAAGAATAGTGGTTTTTGT
1 CGTGCCACC-GATTAAGAATAGTAGTTTTTGT
** **
50167 TATGCCACCGGA-TAAGAATAGT-GATTTTTAC
1 CGTGCCACC-GATTAAGAATAGTAG-TTTTTGT
50198 CGTGCCACCGAATT-AGAATAGT-GATTTTTGT
1 CGTGCCACCG-ATTAAGAATAGTAG-TTTTTGT
50229 TCTAACCTAT
Statistics
Matches: 138, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
30 2 0.01
31 133 0.96
32 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (31 bp):
CGTGCCACCGATTAAGAATAGTAGTTTTTGT
Found at i:51083 original size:11 final size:11
Alignment explanation
Indices: 51069--51107 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
51059 TAACTATTAT
51069 ATAAAAATATA
1 ATAAAAATATA
51080 ATAAAAATATA
1 ATAAAAATATA
*
51091 ATAAAATTATA
1 ATAAAAATATA
51102 ATAAAA
1 ATAAAA
51108 TAAAATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAAAATATA
Found at i:51108 original size:11 final size:11
Alignment explanation
Indices: 51064--51108 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
51054 TAAAATAACT
51064 ATTAT-ATAAA
1 ATTATAATAAA
*
51074 AATATAATAAA
1 ATTATAATAAA
*
51085 AATATAATAAA
1 ATTATAATAAA
51096 ATTATAATAAA
1 ATTATAATAAA
51107 AT
1 AT
51109 AAAATATTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
10 4 0.12
11 28 0.88
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
ATTATAATAAA
Found at i:51177 original size:16 final size:16
Alignment explanation
Indices: 51158--51203 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
51148 TTAACTCAAA
*
51158 AATAAATTAATTATTT
1 AATAAATTAAATATTT
*
51174 AATAAAATAAATATTT
1 AATAAATTAAATATTT
51190 AATAAATTAAATAT
1 AATAAATTAAATAT
51204 CATAAACACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AATAAATTAAATATTT
Found at i:51699 original size:6 final size:6
Alignment explanation
Indices: 51688--51712 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
51678 CATACAGGAA
51688 AATTTT AATTTT AATTTT AATTTT A
1 AATTTT AATTTT AATTTT AATTTT A
51713 TAAATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (6 bp):
AATTTT
Found at i:51844 original size:18 final size:19
Alignment explanation
Indices: 51811--51846 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51801 AATTCCAGAA
*
51811 ATAATTTATAAAATAACTC
1 ATAATTAATAAAATAACTC
51830 ATAATTAAT-AAATAACT
1 ATAATTAATAAAATAACT
51847 TATACATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (19 bp):
ATAATTAATAAAATAACTC
Found at i:52440 original size:2 final size:2
Alignment explanation
Indices: 52433--52488 Score: 76
Period size: 2 Copynumber: 28.0 Consensus size: 2
52423 ATTATTCCTT
* * *
52433 TA TA TA TA TA CA TA CA TA TA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
52475 AA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA
52489 AAGGCTAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (2 bp):
TA
Found at i:57641 original size:17 final size:18
Alignment explanation
Indices: 57619--57652 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
57609 TTAGAGATGC
57619 AATTATA-TTTTTATTTT
1 AATTATATTTTTTATTTT
57636 AATTATATTTTTTATTT
1 AATTATATTTTTTATTT
57653 ATTTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
AATTATATTTTTTATTTT
Found at i:57653 original size:17 final size:17
Alignment explanation
Indices: 57619--57666 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 17
57609 TTAGAGATGC
57619 AATTATA-TTTTTATTTT
1 AATTATATTTTTTA-TTT
57636 AATTATATTTTTTATTT
1 AATTATATTTTTTATTT
*
57653 -ATT-TATTATTTATT
1 AATTATATTTTTTATT
57667 AATATTTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 10 0.34
16 3 0.10
17 10 0.34
18 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
AATTATATTTTTTATTT
Found at i:57662 original size:18 final size:19
Alignment explanation
Indices: 57620--57677 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 19
57610 TAGAGATGCA
57620 ATTATATTTTTATTTTAATT
1 ATTAT-TTTTTATTTTAATT
*
57640 A-TATTTTTTA-TTTATTT
1 ATTATTTTTTATTTTAATT
*
57657 ATTATTTATTAATATTTAATT
1 ATTATTT-TTTAT-TTTAATT
57678 CGAAATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 7 0.23
18 11 0.35
19 6 0.19
20 1 0.03
21 6 0.19
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
ATTATTTTTTATTTTAATT
Found at i:57767 original size:28 final size:31
Alignment explanation
Indices: 57715--57771 Score: 84
Period size: 28 Copynumber: 1.9 Consensus size: 31
57705 GCATCAAAAA
57715 GTTATGTTAAAAGAACACAACATTTAAATTT
1 GTTATGTTAAAAGAACACAACATTTAAATTT
*
57746 GTTATG-T-AAAG-ACATAACATTTAAAT
1 GTTATGTTAAAAGAACACAACATTTAAAT
57772 AAAGACATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 14 0.56
29 4 0.16
30 1 0.04
31 6 0.24
ACGTcount: A:0.46, C:0.09, G:0.11, T:0.35
Consensus pattern (31 bp):
GTTATGTTAAAAGAACACAACATTTAAATTT
Found at i:62800 original size:17 final size:18
Alignment explanation
Indices: 62778--62811 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
62768 TTAGAGATGC
62778 AATTATA-TTTTTATTTT
1 AATTATATTTTTTATTTT
62795 AATTATATTTTTTATTT
1 AATTATATTTTTTATTT
62812 ATTTATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
AATTATATTTTTTATTTT
Found at i:62812 original size:17 final size:17
Alignment explanation
Indices: 62778--62825 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 17
62768 TTAGAGATGC
62778 AATTATA-TTTTTATTTT
1 AATTATATTTTTTA-TTT
62795 AATTATATTTTTTATTT
1 AATTATATTTTTTATTT
*
62812 -ATT-TATTATTTATT
1 AATTATATTTTTTATT
62826 AATATTTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
15 10 0.34
16 3 0.10
17 10 0.34
18 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
AATTATATTTTTTATTT
Found at i:62821 original size:18 final size:19
Alignment explanation
Indices: 62779--62836 Score: 57
Period size: 18 Copynumber: 3.0 Consensus size: 19
62769 TAGAGATGCA
62779 ATTATATTTTTATTTTAATT
1 ATTAT-TTTTTATTTTAATT
*
62799 A-TATTTTTTA-TTTATTT
1 ATTATTTTTTATTTTAATT
*
62816 ATTATTTATTAATATTTAATT
1 ATTATTT-TTTAT-TTTAATT
62837 CGAAATATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
17 7 0.23
18 11 0.35
19 6 0.19
20 1 0.03
21 6 0.19
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
ATTATTTTTTATTTTAATT
Found at i:64610 original size:3 final size:3
Alignment explanation
Indices: 64604--64639 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
64594 CCCAAAAAAT
64604 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
64640 AAGCCATTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:70228 original size:40 final size:43
Alignment explanation
Indices: 70143--70228 Score: 117
Period size: 40 Copynumber: 2.1 Consensus size: 43
70133 ATTATTATTG
*
70143 TTTATTATATTACTTAGTAAGCATTAAAATAATATTTTAATAT
1 TTTATTATATTACTTAGTAAGCATTAAAATAATATTTTAAAAT
*
70186 TTTATTATA-TA-TTA-TAAG-ATTAAATTATATATTTTAAAAT
1 TTTATTATATTACTTAGTAAGCATTAAAATA-ATATTTTAAAAT
70226 TTT
1 TTT
70229 TACCGGTAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
39 8 0.20
40 18 0.45
41 3 0.08
42 2 0.05
43 9 0.22
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.52
Consensus pattern (43 bp):
TTTATTATATTACTTAGTAAGCATTAAAATAATATTTTAAAAT
Found at i:70998 original size:24 final size:24
Alignment explanation
Indices: 70952--71000 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
70942 CAATTAATTT
*
70952 ATTATTTTCATGAAATAAAAATAA
1 ATTATTTTCATAAAATAAAAATAA
70976 ATTATTTT-ATAAAATAAATAATAA
1 ATTATTTTCATAAAATAAA-AATAA
71000 A
1 A
71001 AAATATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (24 bp):
ATTATTTTCATAAAATAAAAATAA
Found at i:71523 original size:3 final size:3
Alignment explanation
Indices: 71509--71554 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
71499 GGGAATTTAT
*
71509 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
71555 CCCTCAATTG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:72072 original size:11 final size:11
Alignment explanation
Indices: 72036--72074 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
72026 AATCGATTTA
72036 TTTAAATAAAAT
1 TTTAAA-AAAAT
* *
72048 TTTAAAATATT
1 TTTAAAAAAAT
72059 TTTAAAAAAAT
1 TTTAAAAAAAT
72070 TTTAA
1 TTTAA
72075 TATTAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TTTAAAAAAAT
Found at i:72112 original size:20 final size:20
Alignment explanation
Indices: 72074--72112 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
72064 AAAAATTTTA
*
72074 ATATTAAATAAATATTAAAT
1 ATATTAAATAAATAATAAAT
* *
72094 ATATTAAATTATTAATAAA
1 ATATTAAATAAATAATAAA
72113 ACATCCATCT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATTAAATAAATAATAAAT
Found at i:72598 original size:3 final size:3
Alignment explanation
Indices: 72590--72629 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
72580 AAATTTCAAC
72590 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
72630 GTGAATCAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:73628 original size:34 final size:33
Alignment explanation
Indices: 73582--73730 Score: 129
Period size: 34 Copynumber: 4.4 Consensus size: 33
73572 AGTTTAGTAA
73582 AAACCACCAAATCACCCATTTAATCAACAATGGC
1 AAACCA-CAAATCACCCATTTAATCAACAATGGC
** * *
73616 AAATTATCAAATCTCCC-TTTAGTCAACAATGGC
1 AAACCA-CAAATCACCCATTTAATCAACAATGGC
* *
73649 AAACCACTAAATCACCAATTAAATCAACAATGGC
1 AAACCAC-AAATCACCCATTTAATCAACAATGGC
* * * * * * *
73683 AAACTACCACATCTCTCATTCAGTCAACAATGGT
1 AAACCA-CAAATCACCCATTTAATCAACAATGGC
73717 AAACCACCAAATCA
1 AAACCA-CAAATCA
73731 ACAATGGCAA
Statistics
Matches: 90, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
32 1 0.01
33 26 0.29
34 62 0.69
35 1 0.01
ACGTcount: A:0.43, C:0.29, G:0.07, T:0.21
Consensus pattern (33 bp):
AAACCACAAATCACCCATTTAATCAACAATGGC
Found at i:73664 original size:67 final size:68
Alignment explanation
Indices: 73582--73735 Score: 211
Period size: 67 Copynumber: 2.3 Consensus size: 68
73572 AGTTTAGTAA
* * * * * *
73582 AAACCACCAAATCACCCATTTAATCAACAATGGCAAATTATCAAATCTC-CCTTTAGTCAACAAT
1 AAACCACCAAATCACCAATTAAATCAACAATGGCAAACTACCAAATCTCTCATTCAGTCAACAAT
73646 GGC
66 GGC
* *
73649 AAACCACTAAATCACCAATTAAATCAACAATGGCAAACTACCACATCTCTCATTCAGTCAACAAT
1 AAACCACCAAATCACCAATTAAATCAACAATGGCAAACTACCAAATCTCTCATTCAGTCAACAAT
*
73714 GGT
66 GGC
*
73717 AAACCACCAAATCAACAAT
1 AAACCACCAAATCACCAAT
73736 GGCAAACTAC
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
67 43 0.57
68 32 0.43
ACGTcount: A:0.44, C:0.29, G:0.06, T:0.21
Consensus pattern (68 bp):
AAACCACCAAATCACCAATTAAATCAACAATGGCAAACTACCAAATCTCTCATTCAGTCAACAAT
GGC
Found at i:73734 original size:22 final size:22
Alignment explanation
Indices: 73706--73752 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
73696 TCTCATTCAG
*
73706 TCAACAATGGTAAACCACCAAA
1 TCAACAATGGCAAACCACCAAA
*
73728 TCAACAATGGCAAACTACCAAA
1 TCAACAATGGCAAACCACCAAA
73750 TCA
1 TCA
73753 CCATTTAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.28, G:0.09, T:0.15
Consensus pattern (22 bp):
TCAACAATGGCAAACCACCAAA
Found at i:77775 original size:18 final size:19
Alignment explanation
Indices: 77752--77802 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
77742 CCCACTGTTT
*
77752 TACGTGTACAGTA-CCATA
1 TACGTGAACAGTACCCATA
* *
77770 TACGTGAATAGTACCCGTA
1 TACGTGAACAGTACCCATA
*
77789 TACGTGAATAGTAC
1 TACGTGAACAGTAC
77803 TTGTATACGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (19 bp):
TACGTGAACAGTACCCATA
Found at i:77792 original size:19 final size:19
Alignment explanation
Indices: 77768--77820 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
77758 TACAGTACCA
77768 TATACGTGAATAGTACCCG
1 TATACGTGAATAGTACCCG
**
77787 TATACGTGAATAGTACTTG
1 TATACGTGAATAGTACCCG
*
77806 TATACGTAAATAGTA
1 TATACGTGAATAGTA
77821 TCTCGACAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (19 bp):
TATACGTGAATAGTACCCG
Found at i:78165 original size:34 final size:34
Alignment explanation
Indices: 78125--78337 Score: 192
Period size: 34 Copynumber: 6.3 Consensus size: 34
78115 GGTAAAAATC
* *
78125 ACCAAATCACCCATTTAATTAACAATGATAAACT
1 ACCAAATCACCCATTTAATCAACAATGGTAAACT
* * * * * *
78159 ATCAAATCTCTCATTTAGTCAATAATGGTAAACC
1 ACCAAATCACCCATTTAATCAACAATGGTAAACT
*
78193 ACTAAATCACCCATTTAATCAACAATGGTAAACT
1 ACCAAATCACCCATTTAATCAACAATGGTAAACT
* * * *
78227 ACCAAATCTCCCATTTAGTCAACAATAGTAAACC
1 ACCAAATCACCCATTTAATCAACAATGGTAAACT
* ** *
78261 ACCAAGTCACTTATTTAATCAACAATGGTAAATT
1 ACCAAATCACCCATTTAATCAACAATGGTAAACT
* ***** **
78295 ATCAAATTTTTTATTTAATCAACAATGACAAACT
1 ACCAAATCACCCATTTAATCAACAATGGTAAACT
*
78329 ACTAAATCA
1 ACCAAATCA
78338 ATAATAATAA
Statistics
Matches: 139, Mismatches: 40, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
34 139 1.00
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.30
Consensus pattern (34 bp):
ACCAAATCACCCATTTAATCAACAATGGTAAACT
Found at i:78200 original size:68 final size:68
Alignment explanation
Indices: 78128--78337 Score: 258
Period size: 68 Copynumber: 3.1 Consensus size: 68
78118 AAAAATCACC
* * *
78128 AAATCACCCATTTAATTAACAATGATAAACTATCAAATCTCTCATTTAGTCAATAATGGTAAACC
1 AAATCACCCATTTAATCAACAATGGTAAACTATCAAATCTCTCATTTAGTCAACAATGGTAAACC
78193 ACT
66 ACT
* * *
78196 AAATCACCCATTTAATCAACAATGGTAAACTACCAAATCTCCCATTTAGTCAACAATAGTAAACC
1 AAATCACCCATTTAATCAACAATGGTAAACTATCAAATCTCTCATTTAGTCAACAATGGTAAACC
*
78261 ACC
66 ACT
* ** * * * * * ** *
78264 AAGTCACTTATTTAATCAACAATGGTAAATTATCAAATTTTTTATTTAATCAACAATGACAAACT
1 AAATCACCCATTTAATCAACAATGGTAAACTATCAAATCTCTCATTTAGTCAACAATGGTAAACC
78329 ACT
66 ACT
78332 AAATCA
1 AAATCA
78338 ATAATAATAA
Statistics
Matches: 119, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
68 119 1.00
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (68 bp):
AAATCACCCATTTAATCAACAATGGTAAACTATCAAATCTCTCATTTAGTCAACAATGGTAAACC
ACT
Found at i:78595 original size:6 final size:6
Alignment explanation
Indices: 78584--78624 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
78574 ACTGATCCTT
*
78584 ACTAGG ACTAGG ACTAGG ACTAGG ACTAGG GCTAGG ACTAG
1 ACTAGG ACTAGG ACTAGG ACTAGG ACTAGG ACTAGG ACTAG
78625 AAAGGAGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.32, C:0.17, G:0.34, T:0.17
Consensus pattern (6 bp):
ACTAGG
Found at i:78653 original size:6 final size:6
Alignment explanation
Indices: 78642--78669 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
78632 CATCTTGTAT
78642 TCTACC TCTACC TCTACC TCTACC TCTA
1 TCTACC TCTACC TCTACC TCTACC TCTA
78670 GGGTTTCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.46, G:0.00, T:0.36
Consensus pattern (6 bp):
TCTACC
Found at i:90233 original size:34 final size:34
Alignment explanation
Indices: 90190--90267 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
90180 GTTTAATTTA
* *
90190 TTGACTAAATAGGTGGTTTGATAGTTTATAATTG
1 TTGACTAAATAAGTGATTTGATAGTTTATAATTG
* * * * *
90224 TTGATTAAATAAGTGATTTGGTGGTTTGTCATTG
1 TTGACTAAATAAGTGATTTGATAGTTTATAATTG
90258 TTGACTAAAT
1 TTGACTAAAT
90268 GATTAAAAGA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.28, C:0.04, G:0.23, T:0.45
Consensus pattern (34 bp):
TTGACTAAATAAGTGATTTGATAGTTTATAATTG
Found at i:94522 original size:34 final size:34
Alignment explanation
Indices: 94484--94601 Score: 173
Period size: 34 Copynumber: 3.5 Consensus size: 34
94474 AAGTGGGAAA
*
94484 ATTGTTGACTAAATGGGTGATTTAGTGGTTTGCC
1 ATTGTTGACTAAATGGGTGATTTGGTGGTTTGCC
* *
94518 ATTGTTGACTAAATGAGTAATTTGGTGGTTTGCC
1 ATTGTTGACTAAATGGGTGATTTGGTGGTTTGCC
* * *
94552 ATTATTGATTAAATGGGTGATTTGGTGGTTTGTC
1 ATTGTTGACTAAATGGGTGATTTGGTGGTTTGCC
*
94586 ATTGTTAACTAAATGG
1 ATTGTTGACTAAATGG
94602 TTAAAAAATA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 73 1.00
ACGTcount: A:0.24, C:0.07, G:0.27, T:0.42
Consensus pattern (34 bp):
ATTGTTGACTAAATGGGTGATTTGGTGGTTTGCC
Found at i:95477 original size:7 final size:7
Alignment explanation
Indices: 95465--95500 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
95455 GAATTCATTA
95465 AATCTAT
1 AATCTAT
95472 AATCTAT
1 AATCTAT
95479 AATCTAT
1 AATCTAT
95486 AATCTAT
1 AATCTAT
*
95493 AATATAT
1 AATCTAT
95500 A
1 A
95501 TATATATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.47, C:0.11, G:0.00, T:0.42
Consensus pattern (7 bp):
AATCTAT
Found at i:95517 original size:14 final size:14
Alignment explanation
Indices: 95469--95517 Score: 55
Period size: 14 Copynumber: 3.6 Consensus size: 14
95459 TCATTAAATC
* *
95469 TATAATCTATAATC
1 TATAATATATAATA
*
95483 TATAATCTATAATA
1 TATAATATATAATA
*
95497 TAT-ATATATATTA
1 TATAATATATAATA
95510 TATAATAT
1 TATAATAT
95518 CAACTTAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
13 11 0.35
14 20 0.65
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (14 bp):
TATAATATATAATA
Found at i:95640 original size:24 final size:24
Alignment explanation
Indices: 95587--95642 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
95577 TATTATGTCC
95587 TTAATTAATTAATAATTTTTATTA
1 TTAATTAATTAATAATTTTTATTA
**
95611 AAAATTAATTAATTAATTTATT-TT-
1 TTAATTAATTAA-TAATTT-TTATTA
95635 TTAATTAA
1 TTAATTAA
95643 ATCAAAATTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 16 0.62
25 8 0.31
26 2 0.08
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
TTAATTAATTAATAATTTTTATTA
Found at i:96311 original size:115 final size:115
Alignment explanation
Indices: 96100--96309 Score: 291
Period size: 115 Copynumber: 1.8 Consensus size: 115
96090 TAAAAAAGAA
* * * * * * **
96100 TATTACCAAAAAATGTTAATATAATTGGAATTTTAATTGTAATTTATTAATTTTGGGTTATTAAA
1 TATTACCAAAAAATGCTAATACAAATAGAATTCTAATAGTAATTTATTAATTTTGGGTTACGAAA
*
96165 GAAAAAAGAAACAAAATCAAGATAAGAAAAAATGCAACCTTCAGTGTTGG
66 GAAAAAAGAAACAAAATAAAGATAAGAAAAAATGCAACCTTCAGTGTTGG
* *
96215 TATTACTAAAAAATGCTAATACAAATAGAATTCTAATAGTAATTTATTAATTTTGGG-T-CGAGA
1 TATTACCAAAAAATGCTAATACAAATAGAATTCTAATAGTAATTTATTAATTTTGGGTTACGAAA
96278 -AAAAAAGAAACAAAATAAAGATAAAGAAAAAA
66 GAAAAAAGAAACAAAATAAAGAT-AAGAAAAAA
96310 AAGAGCATTC
Statistics
Matches: 83, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
112 21 0.25
113 11 0.13
114 1 0.01
115 50 0.60
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (115 bp):
TATTACCAAAAAATGCTAATACAAATAGAATTCTAATAGTAATTTATTAATTTTGGGTTACGAAA
GAAAAAAGAAACAAAATAAAGATAAGAAAAAATGCAACCTTCAGTGTTGG
Found at i:100145 original size:21 final size:20
Alignment explanation
Indices: 100121--100161 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
100111 TGCTCGGTAG
*
100121 TTTTAGTTTTTAATTAATTTTT
1 TTTTAATTTTT-ATT-ATTTTT
100143 TTTTAATTTTTATTATTTT
1 TTTTAATTTTTATTATTTT
100162 AAAAGAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 3 0.17
22 10 0.56
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (20 bp):
TTTTAATTTTTATTATTTTT
Found at i:100410 original size:15 final size:15
Alignment explanation
Indices: 100375--100410 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
100365 TTTATTAATT
100375 ATTTTAAATTTTTTA
1 ATTTTAAATTTTTTA
*
100390 AATTTAAATTTTTTA
1 ATTTTAAATTTTTTA
*
100405 TTTTTA
1 ATTTTA
100411 TTTTATTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTTAAATTTTTTA
Found at i:101603 original size:2 final size:2
Alignment explanation
Indices: 101596--101640 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
101586 CTTTGCCTTC
101596 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
101638 AT A
1 AT A
101641 CACGTGTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:102430 original size:14 final size:14
Alignment explanation
Indices: 102411--102444 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
102401 AATTTGGAGT
*
102411 AGTTTTAGGTTTTA
1 AGTTTTAGGGTTTA
102425 AGTTTTAGGGTTTA
1 AGTTTTAGGGTTTA
102439 A-TTTTA
1 AGTTTTA
102445 ACCAAGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (14 bp):
AGTTTTAGGGTTTA
Found at i:106664 original size:2 final size:2
Alignment explanation
Indices: 106603--106648 Score: 65
Period size: 2 Copynumber: 22.5 Consensus size: 2
106593 AGTTCACAAT
* *
106603 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA TGA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
106646 TA T
1 TA T
106649 GTTTATTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (2 bp):
TA
Found at i:107652 original size:12 final size:12
Alignment explanation
Indices: 107635--107661 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
107625 GAGTGCAGCT
107635 GCACTGGCATTG
1 GCACTGGCATTG
107647 GCACTGGCATTG
1 GCACTGGCATTG
107659 GCA
1 GCA
107662 TTGGAATGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.19, C:0.26, G:0.33, T:0.22
Consensus pattern (12 bp):
GCACTGGCATTG
Found at i:110063 original size:12 final size:13
Alignment explanation
Indices: 110040--110079 Score: 55
Period size: 12 Copynumber: 3.1 Consensus size: 13
110030 AAAAATTTTC
110040 AATTTAATTATAA
1 AATTTAATTATAA
110053 AATTTAA-TATAA
1 AATTTAATTATAA
*
110065 AATTATTATTATAA
1 AATT-TAATTATAA
110079 A
1 A
110080 TTCTTGGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 9 0.38
13 9 0.38
14 6 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (13 bp):
AATTTAATTATAA
Found at i:110103 original size:25 final size:24
Alignment explanation
Indices: 110075--110133 Score: 75
Period size: 25 Copynumber: 2.5 Consensus size: 24
110065 AATTATTATT
110075 ATAAATTCTTGGTTGTGTTTAAAAA
1 ATAAATTCTTGGTTGTGTTT-AAAA
** *
110100 ATAAGCTATTGGTTGTGTTTAAAA
1 ATAAATTCTTGGTTGTGTTTAAAA
110124 A-AAATTCTTG
1 ATAAATTCTTG
110134 ATTAAAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
23 6 0.21
24 5 0.18
25 17 0.61
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (24 bp):
ATAAATTCTTGGTTGTGTTTAAAA
Found at i:111307 original size:32 final size:31
Alignment explanation
Indices: 111271--111344 Score: 80
Period size: 32 Copynumber: 2.3 Consensus size: 31
111261 AATTTTTAAA
* *
111271 TTAAATCATTTT-AGATTAGATTATTTTGAATT
1 TTAAAT-ATTTTGAGATTAGATCATTTT-AAGT
111303 TTAAA-ATTTTTGAGATTAGATCATTTTAAGT
1 TTAAATA-TTTTGAGATTAGATCATTTTAAGT
111334 TTAAATTATTT
1 TTAAA-TATTT
111345 CGAGTTCAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
30 1 0.03
31 12 0.33
32 22 0.61
33 1 0.03
ACGTcount: A:0.35, C:0.03, G:0.09, T:0.53
Consensus pattern (31 bp):
TTAAATATTTTGAGATTAGATCATTTTAAGT
Found at i:111344 original size:16 final size:16
Alignment explanation
Indices: 111264--111344 Score: 51
Period size: 15 Copynumber: 5.2 Consensus size: 16
111254 TTATCAAAAT
*
111264 TTTTAA-ATTAAATCA
1 TTTTAAGATTAAATTA
*
111279 TTTT-AGATTAGATTA
1 TTTTAAGATTAAATTA
** *
111294 TTTTGAATTTTAAAAT-
1 TTTT-AAGATTAAATTA
* * *
111310 TTTTGAGATTAGATCA
1 TTTTAAGATTAAATTA
*
111326 TTTTAAGTTTAAATTA
1 TTTTAAGATTAAATTA
111342 TTT
1 TTT
111345 CGAGTTCAGA
Statistics
Matches: 46, Mismatches: 16, Indels: 7
0.67 0.23 0.10
Matches are distributed among these distances:
14 1 0.02
15 20 0.43
16 19 0.41
17 6 0.13
ACGTcount: A:0.36, C:0.02, G:0.09, T:0.53
Consensus pattern (16 bp):
TTTTAAGATTAAATTA
Found at i:111350 original size:16 final size:16
Alignment explanation
Indices: 111331--111367 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
111321 GATCATTTTA
*
111331 AGTTTAAATTATTTCG
1 AGTTCAAATTATTTCG
*
111347 AGTTCAGATTATTTCG
1 AGTTCAAATTATTTCG
111363 AGTTC
1 AGTTC
111368 GGATTATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.46
Consensus pattern (16 bp):
AGTTCAAATTATTTCG
Found at i:111372 original size:16 final size:16
Alignment explanation
Indices: 111338--111376 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
111328 TTAAGTTTAA
111338 ATTATTTCGAGTTCAG
1 ATTATTTCGAGTTCAG
*
111354 ATTATTTCGAGTTCGG
1 ATTATTTCGAGTTCAG
111370 ATTATTT
1 ATTATTT
111377 TAAATTCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.23, C:0.10, G:0.18, T:0.49
Consensus pattern (16 bp):
ATTATTTCGAGTTCAG
Found at i:111388 original size:16 final size:16
Alignment explanation
Indices: 111338--111389 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
111328 TTAAGTTTAA
* *
111338 ATTATTTCGAGTTCAG
1 ATTATTTCAAATTCAG
* * *
111354 ATTATTTCGAGTTCGG
1 ATTATTTCAAATTCAG
*
111370 ATTATTTTAAATTCAG
1 ATTATTTCAAATTCAG
111386 ATTA
1 ATTA
111390 ATTGAATTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (16 bp):
ATTATTTCAAATTCAG
Found at i:115055 original size:2 final size:2
Alignment explanation
Indices: 115050--115078 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
115040 CTCTCTCTCT
115050 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA C
115079 TCAGCCACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.52, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:119545 original size:260 final size:260
Alignment explanation
Indices: 119084--119609 Score: 1052
Period size: 260 Copynumber: 2.0 Consensus size: 260
119074 AGACGTTAAA
119084 GCTTGGACATTGTACATCTAAAGACTTATAATTGAATTCTAGGTGCTTAAGAAGGCAAAAGACAT
1 GCTTGGACATTGTACATCTAAAGACTTATAATTGAATTCTAGGTGCTTAAGAAGGCAAAAGACAT
119149 ATCAAAAACTGGAGTCAATATGCACCGCACTGAAGATATTAATTTTGAGGAACCCTTGAACCAAC
66 ATCAAAAACTGGAGTCAATATGCACCGCACTGAAGATATTAATTTTGAGGAACCCTTGAACCAAC
119214 AAATCCAAGATATAATAAACATAAATTCCATGTCATATTACCATGCATTTGAACATTGTGAGACC
131 AAATCCAAGATATAATAAACATAAATTCCATGTCATATTACCATGCATTTGAACATTGTGAGACC
119279 TTACCCTTCTTGCTGAAAAAACATTATTTTTATAACTCTTGAAATCATAGTTTGGAATATCTACT
196 TTACCCTTCTTGCTGAAAAAACATTATTTTTATAACTCTTGAAATCATAGTTTGGAATATCTACT
119344 GCTTGGACATTGTACATCTAAAGACTTATAATTGAATTCTAGGTGCTTAAGAAGGCAAAAGACAT
1 GCTTGGACATTGTACATCTAAAGACTTATAATTGAATTCTAGGTGCTTAAGAAGGCAAAAGACAT
119409 ATCAAAAACTGGAGTCAATATGCACCGCACTGAAGATATTAATTTTGAGGAACCCTTGAACCAAC
66 ATCAAAAACTGGAGTCAATATGCACCGCACTGAAGATATTAATTTTGAGGAACCCTTGAACCAAC
119474 AAATCCAAGATATAATAAACATAAATTCCATGTCATATTACCATGCATTTGAACATTGTGAGACC
131 AAATCCAAGATATAATAAACATAAATTCCATGTCATATTACCATGCATTTGAACATTGTGAGACC
119539 TTACCCTTCTTGCTGAAAAAACATTATTTTTATAACTCTTGAAATCATAGTTTGGAATATCTACT
196 TTACCCTTCTTGCTGAAAAAACATTATTTTTATAACTCTTGAAATCATAGTTTGGAATATCTACT
119604 GCTTGG
1 GCTTGG
119610 TCATGCCTCA
Statistics
Matches: 266, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
260 266 1.00
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.31
Consensus pattern (260 bp):
GCTTGGACATTGTACATCTAAAGACTTATAATTGAATTCTAGGTGCTTAAGAAGGCAAAAGACAT
ATCAAAAACTGGAGTCAATATGCACCGCACTGAAGATATTAATTTTGAGGAACCCTTGAACCAAC
AAATCCAAGATATAATAAACATAAATTCCATGTCATATTACCATGCATTTGAACATTGTGAGACC
TTACCCTTCTTGCTGAAAAAACATTATTTTTATAACTCTTGAAATCATAGTTTGGAATATCTACT
Found at i:122064 original size:2 final size:2
Alignment explanation
Indices: 122059--122083 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
122049 CAAAAAAAAA
122059 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
122084 AATCAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:122220 original size:2 final size:2
Alignment explanation
Indices: 122213--122237 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
122203 TGGATTATTA
122213 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
122238 ATGTGTTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:123751 original size:15 final size:16
Alignment explanation
Indices: 123728--123757 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
123718 TTGCTCATTC
123728 AAATAAAAACAAAACA
1 AAATAAAAACAAAACA
123744 AAAT-AAAACAAAAC
1 AAATAAAAACAAAAC
123758 CACTGAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.80, C:0.13, G:0.00, T:0.07
Consensus pattern (16 bp):
AAATAAAAACAAAACA
Found at i:129077 original size:21 final size:22
Alignment explanation
Indices: 129047--129092 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
129037 TAAAAAATTA
*
129047 AAAGTAATT-AATAATTATTTTT
1 AAAGTAATTAAAT-ATAATTTTT
129069 AAAG-AATTAAATATAATTTTT
1 AAAGTAATTAAATATAATTTTT
129090 AAA
1 AAA
129093 ATTTTAAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
AAAGTAATTAAATATAATTTTT
Found at i:129142 original size:13 final size:13
Alignment explanation
Indices: 129104--129142 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
129094 TTTTAAGATA
129104 AAAATTATA-TTT
1 AAAATTATATTTT
*
129116 AATAGTTATATTTT
1 AA-AATTATATTTT
129130 AAAATTATATTTT
1 AAAATTATATTTT
129143 TGAAAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 2 0.09
13 16 0.70
14 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (13 bp):
AAAATTATATTTT
Found at i:129197 original size:33 final size:33
Alignment explanation
Indices: 129154--129216 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
129144 GAAAAATTTT
* * *
129154 AAAATCACATTTATTTATAATATTATTAAATTA
1 AAAATAACATTAATTTATAATATAATTAAATTA
* *
129187 AAAATAACATTAATTTTTATTATAATTAAA
1 AAAATAACATTAATTTATAATATAATTAAA
129217 ATCAAGATAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (33 bp):
AAAATAACATTAATTTATAATATAATTAAATTA
Found at i:130421 original size:22 final size:22
Alignment explanation
Indices: 130396--130443 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
130386 TATTTATATA
130396 TTATAAAGTATTTATTACTATG
1 TTATAAAGTATTTATTACTATG
* *
130418 TTATTAAGTATTTATTATTATG
1 TTATAAAGTATTTATTACTATG
130440 TTAT
1 TTAT
130444 GAATTGAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.56
Consensus pattern (22 bp):
TTATAAAGTATTTATTACTATG
Found at i:133201 original size:103 final size:105
Alignment explanation
Indices: 133073--133317 Score: 250
Period size: 103 Copynumber: 2.3 Consensus size: 105
133063 ATAAAAAATT
* * * * * *
133073 TACATATTTAAAA-AGGGAAAGTTTATTAATTTTAAAAT-CATTAAATATTATTTGGACTCTATT
1 TACATA-TTAAAATAGGAAAATTTTATTAATTTTAAAATGCATT-AATATAATGTGAACTCCATT
* *
133136 ATTAAATATTT-TT-ATTTAAATTTAAA-TAAATTAATAAAA
64 ATTAAATATTTATTAATTTAAATATAAATTAAAATAATAAAA
* * * *
133175 TTACATGTTAAAATAGGAAAATTTTATTAATTTTAATATGGATTAATATAATGTGAACTCCATTT
1 -TACATATTAAAATAGGAAAATTTTATTAATTTTAAAATGCATTAATATAATGTGAACTCCATTA
*
133240 TTAAATATTTATTAATTTAGATATAAATTTTAAAATAATAAAA
65 TTAAATATTTATTAATTTAAATATAAA--TTAAAATAATAAAA
* * *
133283 TACATATTTAAAT-TGAAATTTTTTATTAATTTTAA
1 TACATATTAAAATAGGAAA-ATTTTATTAATTTTAA
133318 GGTAGATTAA
Statistics
Matches: 117, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
102 6 0.05
103 53 0.45
104 5 0.04
105 11 0.09
106 4 0.03
107 26 0.22
108 12 0.10
ACGTcount: A:0.45, C:0.04, G:0.06, T:0.45
Consensus pattern (105 bp):
TACATATTAAAATAGGAAAATTTTATTAATTTTAAAATGCATTAATATAATGTGAACTCCATTAT
TAAATATTTATTAATTTAAATATAAATTAAAATAATAAAA
Found at i:133994 original size:17 final size:16
Alignment explanation
Indices: 133967--134007 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
133957 TAGCTGCTTC
133967 CCTTTTTTTTTTTTTT
1 CCTTTTTTTTTTTTTT
133983 -CTTTTTTCTTTTTTTT
1 CCTTTTTT-TTTTTTTT
133999 CCTTTTTTT
1 CCTTTTTTT
134008 CTTGTAGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 9 0.39
17 7 0.30
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (16 bp):
CCTTTTTTTTTTTTTT
Found at i:135915 original size:5 final size:5
Alignment explanation
Indices: 135905--135937 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
135895 CGCAAGCGCA
*
135905 ACATT ACATT ACATT ACATT TCATT ACA-T ACAT
1 ACATT ACATT ACATT ACATT ACATT ACATT ACAT
135938 GTTTAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.39, C:0.21, G:0.00, T:0.39
Consensus pattern (5 bp):
ACATT
Found at i:136578 original size:2 final size:2
Alignment explanation
Indices: 136573--136601 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
136563 GCATATAGTG
136573 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
136602 TCTGTGAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:137597 original size:2 final size:2
Alignment explanation
Indices: 137590--137625 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
137580 AAGAAGCAGG
137590 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
137626 GGGTGTCTGT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:142407 original size:2 final size:2
Alignment explanation
Indices: 142402--142434 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
142392 GGTATATACC
142402 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
142435 TCCTATCTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:147287 original size:2 final size:2
Alignment explanation
Indices: 147280--147305 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
147270 TGGATCTGAA
147280 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
147306 TCACACACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:157818 original size:2 final size:2
Alignment explanation
Indices: 157806--157839 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
157796 TTGTTTGCTA
*
157806 GT GT GT AT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
157840 TTTGTTTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.03, C:0.00, G:0.47, T:0.50
Consensus pattern (2 bp):
GT
Found at i:158547 original size:2 final size:2
Alignment explanation
Indices: 158540--158569 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
158530 CAGCTTTTTC
158540 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
158570 TCACTTGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:160355 original size:2 final size:2
Alignment explanation
Indices: 160348--160373 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
160338 TGAAAGTTAC
160348 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
160374 GTTTTTGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:160578 original size:4 final size:4
Alignment explanation
Indices: 160569--160595 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
160559 ATTCTCATTA
160569 TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TAT
160596 AGATGGAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.22, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:161288 original size:6 final size:6
Alignment explanation
Indices: 161254--161285 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
161244 ATTACTTTAG
*
161254 CCTGGC CCTGGC CCTGGC CCTGGC CCCGGC CC
1 CCTGGC CCTGGC CCTGGC CCTGGC CCTGGC CC
161286 CGGAGGTGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.56, G:0.31, T:0.12
Consensus pattern (6 bp):
CCTGGC
Found at i:166084 original size:7 final size:7
Alignment explanation
Indices: 166070--166099 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
166060 AATCTGATAT
166070 ATGTATA
1 ATGTATA
*
166077 ACGTATA
1 ATGTATA
166084 ATGTATA
1 ATGTATA
166091 ATGTATA
1 ATGTATA
166098 AT
1 AT
166100 TTATGGCTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.03, G:0.13, T:0.40
Consensus pattern (7 bp):
ATGTATA
Found at i:169836 original size:4 final size:4
Alignment explanation
Indices: 169827--169853 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
169817 TCCGATGAGC
169827 CTGT CTGT CTGT CTGT CTGT CTGT CTG
1 CTGT CTGT CTGT CTGT CTGT CTGT CTG
169854 ACGCAGTGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.26, G:0.26, T:0.48
Consensus pattern (4 bp):
CTGT
Found at i:170099 original size:12 final size:12
Alignment explanation
Indices: 170084--170114 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
170074 TCACAAAAAA
170084 AAAAGAAAAAGG
1 AAAAGAAAAAGG
170096 AAAAGAAAAAGG
1 AAAAGAAAAAGG
170108 AAAAGAA
1 AAAAGAA
170115 GGATCTACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAGG
Found at i:170104 original size:18 final size:18
Alignment explanation
Indices: 170078--170112 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
170068 ATTATTTCAC
170078 AAAAAAAAAAGAAAAAGG
1 AAAAAAAAAAGAAAAAGG
* *
170096 AAAAGAAAAAGGAAAAG
1 AAAAAAAAAAGAAAAAG
170113 AAGGATCTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAGAAAAAGG
Found at i:177986 original size:2 final size:2
Alignment explanation
Indices: 177979--178012 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
177969 CTTTCATGCA
177979 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
178013 GTATGTATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:178674 original size:2 final size:2
Alignment explanation
Indices: 178667--178701 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
178657 TTCATTCAAT
178667 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
178702 CTTAACAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:182901 original size:2 final size:2
Alignment explanation
Indices: 182894--182936 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
182884 TGAAGGAGCT
* * *
182894 AG AG AG AG AG AG AG CG AG AG GG AG AG AG AG AG CG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
182936 A
1 A
182937 ACTAATCTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.05, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:183295 original size:2 final size:2
Alignment explanation
Indices: 183288--183321 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
183278 TATCAACAAC
183288 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
183322 TTGAAAGGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:187397 original size:2 final size:2
Alignment explanation
Indices: 187392--187422 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
187382 TTTTGGGTTT
187392 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
187423 TTGCTACTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:188242 original size:2 final size:2
Alignment explanation
Indices: 188235--188266 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
188225 TTTCATAGAG
188235 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
188267 TCTTTTAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:191410 original size:12 final size:12
Alignment explanation
Indices: 191375--191411 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
191365 TTGTCTTAGT
* *
191375 GATGATGACGAT
1 GATGATGAAGAA
191387 GATGATGAAGAA
1 GATGATGAAGAA
191399 GATGATGAAGAA
1 GATGATGAAGAA
191411 G
1 G
191412 CTCTTTTGGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.43, C:0.03, G:0.35, T:0.19
Consensus pattern (12 bp):
GATGATGAAGAA
Found at i:206940 original size:2 final size:2
Alignment explanation
Indices: 206933--206964 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
206923 TTAAAAGAAA
206933 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
206965 CTTACCTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:208078 original size:2 final size:2
Alignment explanation
Indices: 208071--208097 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
208061 CTATCCTATT
208071 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
208098 TAATTTCGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:208495 original size:19 final size:17
Alignment explanation
Indices: 208471--208505 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
208461 CCTTATATTA
208471 TATTAATAAAAATTATTTT
1 TATTAA-AAAAA-TATTTT
208490 TATTAAAAAAATATTT
1 TATTAAAAAAATATTT
208506 AATCATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATTAAAAAAATATTTT
Done.