Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Sequence: Scaffold156 Parameters: 2 7 7 80 10 50 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 2697547 ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34 File 11 of 14 Found at i:2109061 original size:6 final size:6 Alignment explanation
Indices: 2109050--2109098 Score: 54 Period size: 6 Copynumber: 8.8 Consensus size: 6 2109040 GAATCAAATT 2109050 AATTTA AATTTA AA--TA AATTTA AATTTCA AA-TTA AA--TA AATTTA 1 AATTTA AATTTA AATTTA AATTTA AATTT-A AATTTA AATTTA AATTTA 2109094 AATTT 1 AATTT 2109099 TTTTAAAATC Statistics Matches: 38, Mismatches: 0, Indels: 10 0.79 0.00 0.21 Matches are distributed among these distances: 4 8 0.21 5 3 0.08 6 24 0.63 7 3 0.08 ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45 Consensus pattern (6 bp): AATTTA Found at i:2109069 original size:16 final size:16 Alignment explanation
Indices: 2109045--2109096 Score: 63 Period size: 16 Copynumber: 3.2 Consensus size: 16 2109035 ATTCAGAATC * 2109045 AAATTAATTTAAATTT 1 AAATAAATTTAAATTT 2109061 AAATAAATTTAAATTT 1 AAATAAATTTAAATTT 2109077 CAAATTAAA--TAAATTT 1 -AAA-TAAATTTAAATTT 2109093 AAAT 1 AAAT 2109097 TTTTTTAAAA Statistics Matches: 33, Mismatches: 1, Indels: 6 0.82 0.03 0.15 Matches are distributed among these distances: 14 1 0.03 15 3 0.09 16 22 0.67 17 3 0.09 18 4 0.12 ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42 Consensus pattern (16 bp): AAATAAATTTAAATTT Found at i:2109076 original size:22 final size:22 Alignment explanation
Indices: 2109050--2109098 Score: 82 Period size: 22 Copynumber: 2.2 Consensus size: 22 2109040 GAATCAAATT 2109050 AATTT-AAATTTAAATAAATTTA 1 AATTTCAAA-TTAAATAAATTTA 2109072 AATTTCAAATTAAATAAATTTA 1 AATTTCAAATTAAATAAATTTA 2109094 AATTT 1 AATTT 2109099 TTTTAAAATC Statistics Matches: 26, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 22 23 0.88 23 3 0.12 ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45 Consensus pattern (22 bp): AATTTCAAATTAAATAAATTTA Found at i:2109339 original size:2 final size:2 Alignment explanation
Indices: 2109274--2109325 Score: 104 Period size: 2 Copynumber: 26.0 Consensus size: 2 2109264 CTTGCAATTT 2109274 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 2109316 TA TA TA TA TA 1 TA TA TA TA TA 2109326 AAAGAAGGTA Statistics Matches: 50, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 50 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:2118074 original size:2 final size:2 Alignment explanation
Indices: 2118067--2118093 Score: 54 Period size: 2 Copynumber: 13.5 Consensus size: 2 2118057 GTTGCTTCAA 2118067 AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT A 2118094 ATCAAGGGGA Statistics Matches: 25, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 25 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:2118507 original size:21 final size:21 Alignment explanation
Indices: 2118482--2118522 Score: 66 Period size: 21 Copynumber: 2.0 Consensus size: 21 2118472 AAATTAAAAA 2118482 ATATTTTAT-ATTAATATTTAT 1 ATATTTTATAATTAA-ATTTAT 2118503 ATATTTTATAATTAAATTTA 1 ATATTTTATAATTAAATTTA 2118523 AATAAAAATA Statistics Matches: 19, Mismatches: 0, Indels: 2 0.90 0.00 0.10 Matches are distributed among these distances: 21 14 0.74 22 5 0.26 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (21 bp): ATATTTTATAATTAAATTTAT Found at i:2119145 original size:9 final size:9 Alignment explanation
Indices: 2119117--2119147 Score: 53 Period size: 9 Copynumber: 3.4 Consensus size: 9 2119107 TATGCATATT 2119117 ATATTAAAA 1 ATATTAAAA * 2119126 AAATTAAAA 1 ATATTAAAA 2119135 ATATTAAAA 1 ATATTAAAA 2119144 ATAT 1 ATAT 2119148 GATACAAAAT Statistics Matches: 20, Mismatches: 2, Indels: 0 0.91 0.09 0.00 Matches are distributed among these distances: 9 20 1.00 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (9 bp): ATATTAAAA Found at i:2119762 original size:25 final size:26 Alignment explanation
Indices: 2119713--2119769 Score: 66 Period size: 25 Copynumber: 2.2 Consensus size: 26 2119703 TTTATTTGGT * 2119713 TAAATTATAATTTAAATTAATAT-AA 1 TAAATTATAATTTAAATTAAGATAAA 2119738 TAAATTGAT-ATTT-AATTAAAGATAAA 1 TAAATT-ATAATTTAAATT-AAGATAAA 2119764 TAAATT 1 TAAATT 2119770 TATGTTTTTA Statistics Matches: 28, Mismatches: 1, Indels: 5 0.82 0.03 0.15 Matches are distributed among these distances: 24 4 0.14 25 14 0.50 26 10 0.36 ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42 Consensus pattern (26 bp): TAAATTATAATTTAAATTAAGATAAA Found at i:2120535 original size:17 final size:17 Alignment explanation
Indices: 2120518--2120551 Score: 50 Period size: 17 Copynumber: 1.9 Consensus size: 17 2120508 AATAAAAATA 2120518 TAAAATTATTAAATATAT 1 TAAAATT-TTAAATATAT * 2120536 TTAAATTTTAAATATA 1 TAAAATTTTAAATATA 2120552 AATATAATAT Statistics Matches: 15, Mismatches: 1, Indels: 1 0.88 0.06 0.06 Matches are distributed among these distances: 17 9 0.60 18 6 0.40 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (17 bp): TAAAATTTTAAATATAT Found at i:2120576 original size:24 final size:23 Alignment explanation
Indices: 2120527--2120576 Score: 55 Period size: 24 Copynumber: 2.1 Consensus size: 23 2120517 ATAAAATTAT * * * 2120527 TAAATATATTTAAATTTTAAATA 1 TAAATATATATAAATTATAAACA * 2120550 TAAATATAATATAAATTATATACA 1 TAAATAT-ATATAAATTATAAACA 2120574 TAA 1 TAA 2120577 TATGTTAATA Statistics Matches: 22, Mismatches: 4, Indels: 1 0.81 0.15 0.04 Matches are distributed among these distances: 23 7 0.32 24 15 0.68 ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42 Consensus pattern (23 bp): TAAATATATATAAATTATAAACA Found at i:2121641 original size:21 final size:21 Alignment explanation
Indices: 2121606--2121650 Score: 56 Period size: 20 Copynumber: 2.1 Consensus size: 21 2121596 AAAATTTTTT 2121606 AAAAAAATTAGATAAAAAATTAA 1 AAAAAAATTA-AT-AAAAATTAA * 2121629 AAAAAAATT-ATAAATATTAA 1 AAAAAAATTAATAAAAATTAA 2121649 AA 1 AA 2121651 TTTAAAATTA Statistics Matches: 21, Mismatches: 1, Indels: 3 0.84 0.04 0.12 Matches are distributed among these distances: 20 10 0.48 21 2 0.10 23 9 0.43 ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24 Consensus pattern (21 bp): AAAAAAATTAATAAAAATTAA Found at i:2122761 original size:21 final size:21 Alignment explanation
Indices: 2122721--2122775 Score: 73 Period size: 18 Copynumber: 2.8 Consensus size: 21 2122711 TGAATGGGAG 2122721 AATTTATATATATATTATAAT 1 AATTTATATATATATTATAAT * 2122742 AATTTTTA-ATATA-T-TAAT 1 AATTTATATATATATTATAAT 2122760 AATTTATAT-TATATTA 1 AATTTATATATATATTA 2122776 ATTTTAATAA Statistics Matches: 29, Mismatches: 2, Indels: 7 0.76 0.05 0.18 Matches are distributed among these distances: 18 15 0.52 19 2 0.07 20 5 0.17 21 7 0.24 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (21 bp): AATTTATATATATATTATAAT Found at i:2122959 original size:2 final size:2 Alignment explanation
Indices: 2122952--2122984 Score: 66 Period size: 2 Copynumber: 16.5 Consensus size: 2 2122942 AATTTTATTT 2122952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 2122985 GAAAGGAAGA Statistics Matches: 31, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 31 1.00 ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52 Consensus pattern (2 bp): TA Found at i:2126835 original size:2 final size:2 Alignment explanation
Indices: 2126828--2126859 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 2126818 TCCACTGAAT 2126828 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 2126860 CACACACTTT Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:2127884 original size:27 final size:27 Alignment explanation
Indices: 2127832--2127884 Score: 63 Period size: 27 Copynumber: 2.0 Consensus size: 27 2127822 TAGTTACAGA * * 2127832 TAAATAATTTATATATTAATTTTTTTT 1 TAAATAATTTATATATGAATTATTTTT * 2127859 TAAAT-ATTATATATATGCATTATTTT 1 TAAATAATT-TATATATGAATTATTTT 2127885 CATAAAATTT Statistics Matches: 22, Mismatches: 3, Indels: 2 0.81 0.11 0.07 Matches are distributed among these distances: 26 3 0.14 27 19 0.86 ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58 Consensus pattern (27 bp): TAAATAATTTATATATGAATTATTTTT Found at i:2128761 original size:2 final size:2 Alignment explanation
Indices: 2128750--2128791 Score: 63 Period size: 2 Copynumber: 22.5 Consensus size: 2 2128740 CTTGGTTGAT 2128750 TA TA -A TA TA TA TA TA TA TA T- TA TA -A TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 2128789 TA T 1 TA T 2128792 GTATTCCAAA Statistics Matches: 37, Mismatches: 0, Indels: 6 0.86 0.00 0.14 Matches are distributed among these distances: 1 3 0.08 2 34 0.92 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:2128773 original size:20 final size:20 Alignment explanation
Indices: 2128748--2128789 Score: 84 Period size: 20 Copynumber: 2.1 Consensus size: 20 2128738 TTCTTGGTTG 2128748 ATTATAATATATATATATAT 1 ATTATAATATATATATATAT 2128768 ATTATAATATATATATATAT 1 ATTATAATATATATATATAT 2128788 AT 1 AT 2128790 ATGTATTCCA Statistics Matches: 22, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 20 22 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (20 bp): ATTATAATATATATATATAT Found at i:2134112 original size:38 final size:37 Alignment explanation
Indices: 2134065--2134161 Score: 99 Period size: 37 Copynumber: 2.6 Consensus size: 37 2134055 TGAGTTAAAA * 2134065 TATTTTATTTTGAAAAAAAAAATATCTTGA-AGTAATTT 1 TATTATATTTTGAAAAAAAAAATAT-TTGATA-TAATTT * * * 2134103 TATTATATTTTG-AAAATAAAATATTTTATTATATTTT 1 TATTATATTTTGAAAAAAAAAATATTTGA-TATAATTT * 2134140 TAATATTATTTTGAAAAAAAAA 1 TATTA-TATTTTGAAAAAAAAA 2134162 TTGTTTACCT Statistics Matches: 49, Mismatches: 6, Indels: 7 0.79 0.10 0.11 Matches are distributed among these distances: 36 3 0.06 37 20 0.41 38 19 0.39 39 7 0.14 ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47 Consensus pattern (37 bp): TATTATATTTTGAAAAAAAAAATATTTGATATAATTT Found at i:2134162 original size:38 final size:38 Alignment explanation
Indices: 2134069--2134162 Score: 104 Period size: 38 Copynumber: 2.5 Consensus size: 38 2134059 TTAAAATATT * 2134069 TTATTTTGAAAAAAAAAATATCTTGAAGTAATTTTATTA 1 TTATTTTG-AAAAAAAAATATCTTGAAGTAATTTTAATA * * * 2134108 -TATTTTGAAAATAAAATAT-TTTATTA-TATTTTTAATA 1 TTATTTTGAAAAAAAAATATCTTGA--AGTAATTTTAATA 2134145 TTATTTTGAAAAAAAAAT 1 TTATTTTGAAAAAAAAAT 2134163 TGTTTACCTT Statistics Matches: 47, Mismatches: 5, Indels: 7 0.80 0.08 0.12 Matches are distributed among these distances: 36 3 0.06 37 20 0.43 38 24 0.51 ACGTcount: A:0.47, C:0.01, G:0.05, T:0.47 Consensus pattern (38 bp): TTATTTTGAAAAAAAAATATCTTGAAGTAATTTTAATA Found at i:2135502 original size:2 final size:2 Alignment explanation
Indices: 2135495--2135524 Score: 60 Period size: 2 Copynumber: 15.0 Consensus size: 2 2135485 AAATAAATAA 2135495 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2135525 CTAAATTTGG Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 28 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:2137275 original size:15 final size:15 Alignment explanation
Indices: 2137248--2137289 Score: 61 Period size: 15 Copynumber: 2.9 Consensus size: 15 2137238 ATTTTAAAAA 2137248 TATATTTTT-TTATT 1 TATATTTTTGTTATT 2137262 TA-ATTTTTAGTTATT 1 TATATTTTT-GTTATT 2137277 TATATTTTTGTTA 1 TATATTTTTGTTA 2137290 AATTTTAAAA Statistics Matches: 25, Mismatches: 0, Indels: 5 0.83 0.00 0.17 Matches are distributed among these distances: 13 6 0.24 14 2 0.08 15 11 0.44 16 6 0.24 ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71 Consensus pattern (15 bp): TATATTTTTGTTATT Found at i:2137410 original size:22 final size:22 Alignment explanation
Indices: 2137366--2137408 Score: 61 Period size: 22 Copynumber: 2.0 Consensus size: 22 2137356 ATTTATATAG 2137366 TATAAATTAGATAATATAAAAA 1 TATAAATTAGATAATATAAAAA * * 2137388 TATATATTATATAAT-TAAAAA 1 TATAAATTAGATAATATAAAAA 2137409 ATGTGTTGGA Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 21 6 0.32 22 13 0.68 ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37 Consensus pattern (22 bp): TATAAATTAGATAATATAAAAA Found at i:2140341 original size:75 final size:72 Alignment explanation
Indices: 2140181--2140353 Score: 224 Period size: 75 Copynumber: 2.4 Consensus size: 72 2140171 GTCAAAAATC * * * * * 2140181 AATGTTCCATGATTTCAGG-AAAACATAAAATAATGGTACATTAGTCCATTCCTGTCAAAAAACC 1 AATGTTGCATAATTTCAGGAAAAAGATAAAACAATGATACATTAGTCCATTCCTGTCAAAAAACC * 2140245 ACTTTGA 66 ACTTGGA * 2140252 AATGTTGCATAATTTCAGGGAAAAAGATAAAACGATGATACATTAGTCCATTCCT-TCAAAAAAA 1 AATGTTGCATAATTTCA-GGAAAAAGATAAAACAATGATACATTAGTCCATTCCTGTC---AAAA 2140316 AACCACTTGGA 62 AACCACTTGGA * 2140327 AATGTTGCATAATTTCAGGACAAAGAT 1 AATGTTGCATAATTTCAGGAAAAAGAT 2140354 TGTTTGGGCC Statistics Matches: 89, Mismatches: 8, Indels: 7 0.86 0.08 0.07 Matches are distributed among these distances: 71 15 0.17 72 4 0.04 73 30 0.34 74 9 0.10 75 31 0.35 ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28 Consensus pattern (72 bp): AATGTTGCATAATTTCAGGAAAAAGATAAAACAATGATACATTAGTCCATTCCTGTCAAAAAACC ACTTGGA Found at i:2142846 original size:14 final size:14 Alignment explanation
Indices: 2142819--2142857 Score: 51 Period size: 14 Copynumber: 2.8 Consensus size: 14 2142809 CATTTAAGTA * * 2142819 ATATATATATATAT 1 ATATAAATACATAT 2142833 ATATAAATACATAT 1 ATATAAATACATAT * 2142847 ACATAAATACA 1 ATATAAATACA 2142858 CAAAGTTAAA Statistics Matches: 22, Mismatches: 3, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 14 22 1.00 ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36 Consensus pattern (14 bp): ATATAAATACATAT Found at i:2145898 original size:45 final size:44 Alignment explanation
Indices: 2145805--2145934 Score: 154 Period size: 45 Copynumber: 2.8 Consensus size: 44 2145795 GCGACAAACA * * 2145805 TTTCAACTTTTATCATATTTTGAAAAAAAAATAATAAATAAAATTATGGG 1 TTTCACCTTTTATCATATTTTG-----AAAA-AATAAATAAAACTATGGG 2145855 TTTCACCTTTTATCATATTTTGGAAAAAATAAATAAAACTATGGG 1 TTTCACCTTTTATCATATTTT-GAAAAAATAAATAAAACTATGGG * * 2145900 TTTCACATTTTATCATGTTTT-AAAAAATAAATAAA 1 TTTCACCTTTTATCATATTTTGAAAAAATAAATAAA 2145935 TAAAATTATT Statistics Matches: 75, Mismatches: 4, Indels: 9 0.85 0.05 0.10 Matches are distributed among these distances: 43 14 0.19 45 36 0.48 46 4 0.05 50 20 0.27 51 1 0.01 ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39 Consensus pattern (44 bp): TTTCACCTTTTATCATATTTTGAAAAAATAAATAAAACTATGGG Found at i:2146284 original size:22 final size:22 Alignment explanation
Indices: 2146239--2146283 Score: 74 Period size: 21 Copynumber: 2.1 Consensus size: 22 2146229 GAAAGATAAC * 2146239 TTAAAAATAATTTTTTAATTTT 1 TTAAAAATAATTTATTAATTTT 2146261 TTAAAAATAA-TTATTAATTTT 1 TTAAAAATAATTTATTAATTTT 2146282 TT 1 TT 2146284 TTAATTTTTT Statistics Matches: 22, Mismatches: 1, Indels: 1 0.92 0.04 0.04 Matches are distributed among these distances: 21 12 0.55 22 10 0.45 ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58 Consensus pattern (22 bp): TTAAAAATAATTTATTAATTTT Found at i:2147715 original size:2 final size:2 Alignment explanation
Indices: 2147708--2147745 Score: 76 Period size: 2 Copynumber: 19.0 Consensus size: 2 2147698 AAGTACTTGA 2147708 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2147746 GTCAACTTGT Statistics Matches: 36, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 36 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:2148459 original size:19 final size:18 Alignment explanation
Indices: 2148437--2148475 Score: 51 Period size: 19 Copynumber: 2.1 Consensus size: 18 2148427 CTTTTTTTAA 2148437 AAAAAATTAATTTTTATTT 1 AAAAAATTAATTTTT-TTT * * 2148456 AAAAATTTTATTTTTTTT 1 AAAAAATTAATTTTTTTT 2148474 AA 1 AA 2148476 TTTTAATTTA Statistics Matches: 18, Mismatches: 2, Indels: 1 0.86 0.10 0.05 Matches are distributed among these distances: 18 5 0.28 19 13 0.72 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (18 bp): AAAAAATTAATTTTTTTT Found at i:2148536 original size:19 final size:18 Alignment explanation
Indices: 2148514--2148558 Score: 54 Period size: 20 Copynumber: 2.4 Consensus size: 18 2148504 TCTTATTTAA * 2148514 ATATTTAAATTATTTTTT 1 ATATTTAAATAATTTTTT * 2148532 GATATAATAAATAATTTTTT 1 -ATAT-TTAAATAATTTTTT 2148552 ATATTTA 1 ATATTTA 2148559 TATATTAATT Statistics Matches: 22, Mismatches: 3, Indels: 3 0.79 0.11 0.11 Matches are distributed among these distances: 18 2 0.09 19 8 0.36 20 12 0.55 ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58 Consensus pattern (18 bp): ATATTTAAATAATTTTTT Found at i:2149964 original size:24 final size:25 Alignment explanation
Indices: 2149937--2149983 Score: 60 Period size: 24 Copynumber: 1.9 Consensus size: 25 2149927 TATGCGTGAC * * 2149937 ATAATACATTTAA-ATATTATTAAT 1 ATAACACATTTAATATACTATTAAT * 2149961 ATAACATATTTAATATACTATTA 1 ATAACACATTTAATATACTATTA 2149984 TATTTATGTT Statistics Matches: 19, Mismatches: 3, Indels: 1 0.83 0.13 0.04 Matches are distributed among these distances: 24 11 0.58 25 8 0.42 ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45 Consensus pattern (25 bp): ATAACACATTTAATATACTATTAAT Found at i:2150425 original size:50 final size:47 Alignment explanation
Indices: 2150365--2150470 Score: 149 Period size: 50 Copynumber: 2.2 Consensus size: 47 2150355 ACGTTGAGAT * 2150365 TTAAATTTTAAATTTATTGAATATCAACCGATTATATAAAGCTTATTAAG 1 TTAAATTTTAAATTCATTGAATATC-A-CGATTATATAAAGC-TATTAAG * * 2150415 TTAAATTTTAAATTCATTGAATATCATGATTATATGAAGCTATTAAG 1 TTAAATTTTAAATTCATTGAATATCACGATTATATAAAGCTATTAAG * 2150462 TTAAGTTTT 1 TTAAATTTT 2150471 GAGTTCTTGA Statistics Matches: 52, Mismatches: 4, Indels: 3 0.88 0.07 0.05 Matches are distributed among these distances: 47 15 0.29 48 12 0.23 49 1 0.02 50 24 0.46 ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44 Consensus pattern (47 bp): TTAAATTTTAAATTCATTGAATATCACGATTATATAAAGCTATTAAG Found at i:2150755 original size:5 final size:5 Alignment explanation
Indices: 2150745--2150778 Score: 61 Period size: 5 Copynumber: 7.0 Consensus size: 5 2150735 CACTTGAAAT 2150745 TTTTA TTTTA -TTTA TTTTA TTTTA TTTTA TTTTA 1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA 2150779 CAATATGATC Statistics Matches: 28, Mismatches: 0, Indels: 2 0.93 0.00 0.07 Matches are distributed among these distances: 4 4 0.14 5 24 0.86 ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79 Consensus pattern (5 bp): TTTTA Found at i:2150758 original size:9 final size:9 Alignment explanation
Indices: 2150746--2150776 Score: 53 Period size: 9 Copynumber: 3.3 Consensus size: 9 2150736 ACTTGAAATT 2150746 TTTATTTTA 1 TTTATTTTA 2150755 TTTATTTTA 1 TTTATTTTA 2150764 TTTTATTTTA 1 -TTTATTTTA 2150774 TTT 1 TTT 2150777 TACAATATGA Statistics Matches: 21, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 9 12 0.57 10 9 0.43 ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81 Consensus pattern (9 bp): TTTATTTTA Found at i:2150764 original size:14 final size:15 Alignment explanation
Indices: 2150745--2150778 Score: 61 Period size: 14 Copynumber: 2.3 Consensus size: 15 2150735 CACTTGAAAT 2150745 TTTTATTTTA-TTTA 1 TTTTATTTTATTTTA 2150759 TTTTATTTTATTTTA 1 TTTTATTTTATTTTA 2150774 TTTTA 1 TTTTA 2150779 CAATATGATC Statistics Matches: 19, Mismatches: 0, Indels: 1 0.95 0.00 0.05 Matches are distributed among these distances: 14 10 0.53 15 9 0.47 ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79 Consensus pattern (15 bp): TTTTATTTTATTTTA Found at i:2151587 original size:13 final size:13 Alignment explanation
Indices: 2151569--2151597 Score: 58 Period size: 13 Copynumber: 2.2 Consensus size: 13 2151559 AAAGATACTC 2151569 TTAACCGTATGTA 1 TTAACCGTATGTA 2151582 TTAACCGTATGTA 1 TTAACCGTATGTA 2151595 TTA 1 TTA 2151598 TTAAATATAT Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 16 1.00 ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41 Consensus pattern (13 bp): TTAACCGTATGTA Found at i:2151930 original size:12 final size:12 Alignment explanation
Indices: 2151909--2151937 Score: 51 Period size: 12 Copynumber: 2.5 Consensus size: 12 2151899 AAATGACCCC 2151909 TTTT-TGGTTAA 1 TTTTCTGGTTAA 2151920 TTTTCTGGTTAA 1 TTTTCTGGTTAA 2151932 TTTTCT 1 TTTTCT 2151938 ACTCAGAAAT Statistics Matches: 17, Mismatches: 0, Indels: 1 0.94 0.00 0.06 Matches are distributed among these distances: 11 4 0.24 12 13 0.76 ACGTcount: A:0.14, C:0.07, G:0.14, T:0.66 Consensus pattern (12 bp): TTTTCTGGTTAA Found at i:2152477 original size:17 final size:17 Alignment explanation
Indices: 2152437--2152479 Score: 50 Period size: 18 Copynumber: 2.5 Consensus size: 17 2152427 AAATTACATG * * 2152437 ATAAATTATTTAAAAAG 1 ATAAATTAATTAAAAAA * 2152454 TTAAAATTAATTAAAAAA 1 AT-AAATTAATTAAAAAA 2152472 ATAAATTA 1 ATAAATTA 2152480 TTATAATTTA Statistics Matches: 21, Mismatches: 4, Indels: 2 0.78 0.15 0.07 Matches are distributed among these distances: 17 7 0.33 18 14 0.67 ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35 Consensus pattern (17 bp): ATAAATTAATTAAAAAA Found at i:2153183 original size:16 final size:16 Alignment explanation
Indices: 2153158--2153201 Score: 56 Period size: 15 Copynumber: 2.9 Consensus size: 16 2153148 TTTATTTATT 2153158 ATAA-TTATATTTAAA 1 ATAATTTATATTTAAA * 2153173 ATAATTTATA-TTAAT 1 ATAATTTATATTTAAA * 2153188 ATAATTTTTATTTA 1 ATAATTTATATTTA 2153202 TTTTTATATT Statistics Matches: 25, Mismatches: 2, Indels: 3 0.83 0.07 0.10 Matches are distributed among these distances: 15 17 0.68 16 8 0.32 ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55 Consensus pattern (16 bp): ATAATTTATATTTAAA Found at i:2153226 original size:45 final size:44 Alignment explanation
Indices: 2153135--2153248 Score: 126 Period size: 45 Copynumber: 2.6 Consensus size: 44 2153125 TATTAATATC 2153135 ATATTAATATATTTTTATTTATTATAATTATATTTAAAATAATTT 1 ATATTAATATATTTTTATTTATTAT-ATTATATTTAAAATAATTT * * 2153180 ATATTAATATAATTTTTATTTATT-T-TTATATTTATATCATATTTT 1 ATATTAATAT-ATTTTTATTTATTATATTATATTTA-A-AATAATTT * * * 2153225 ATATTATTTTATATTTATTT-TTAT 1 ATATTAATATATTTTTATTTATTAT 2153249 GTCACATAAT Statistics Matches: 60, Mismatches: 5, Indels: 9 0.81 0.07 0.12 Matches are distributed among these distances: 43 11 0.18 44 11 0.18 45 25 0.42 46 13 0.22 ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63 Consensus pattern (44 bp): ATATTAATATATTTTTATTTATTATATTATATTTAAAATAATTT Found at i:2153267 original size:40 final size:40 Alignment explanation
Indices: 2153173--2153269 Score: 99 Period size: 40 Copynumber: 2.4 Consensus size: 40 2153163 TATATTTAAA * * * * 2153173 ATAATTTATATTAATATAATTTTTATTTATTTTTATATTTAT 1 ATAA-TTATATT-ATATTATTTTTATTTATTTTTATAGTCAC * * 2153215 ATCA-TATTTTATATTATTTTATATTTATTTTTAT-GTCAC 1 ATAATTATATTATATTATTTT-TATTTATTTTTATAGTCAC 2153254 ATAATTATATTATATT 1 ATAATTATATTATATT 2153270 TAATAATTTT Statistics Matches: 45, Mismatches: 8, Indels: 6 0.76 0.14 0.10 Matches are distributed among these distances: 39 14 0.31 40 28 0.62 42 3 0.07 ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62 Consensus pattern (40 bp): ATAATTATATTATATTATTTTTATTTATTTTTATAGTCAC Found at i:2153912 original size:24 final size:24 Alignment explanation
Indices: 2153885--2153936 Score: 70 Period size: 24 Copynumber: 2.2 Consensus size: 24 2153875 TTAATTAGAT 2153885 AATAT-AAATAAAAAAAATAATATA 1 AATATAAAATAAAAAAAAT-ATATA * * 2153909 AATATAAAATAATATAAATATATA 1 AATATAAAATAAAAAAAATATATA 2153933 AATA 1 AATA 2153937 ATTTAAATTT Statistics Matches: 25, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 24 14 0.56 25 11 0.44 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (24 bp): AATATAAAATAAAAAAAATATATA Found at i:2153919 original size:16 final size:16 Alignment explanation
Indices: 2153883--2153970 Score: 86 Period size: 16 Copynumber: 5.2 Consensus size: 16 2153873 ATTTAATTAG * 2153883 ATAATATAAATAAAAAAA 1 ATAATATAAAT--ATAAA 2153901 ATAATATAAATATAAA 1 ATAATATAAATATAAA 2153917 ATAATATAAATATATAA 1 ATAATATAAATATA-AA * * * * 2153934 ATAATTTAAATTTTAT 1 ATAATATAAATATAAA 2153950 ATAATATAAATTATTAAA 1 ATAATATAAA-TA-TAAA 2153968 ATA 1 ATA 2153971 TTAATTTTTA Statistics Matches: 58, Mismatches: 9, Indels: 6 0.79 0.12 0.08 Matches are distributed among these distances: 16 28 0.48 17 14 0.24 18 16 0.28 ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36 Consensus pattern (16 bp): ATAATATAAATATAAA Found at i:2153944 original size:33 final size:34 Alignment explanation
Indices: 2153883--2153960 Score: 95 Period size: 33 Copynumber: 2.3 Consensus size: 34 2153873 ATTTAATTAG 2153883 ATAATATAAATAAAAAAAATAATATAAATATAAA 1 ATAATATAAATAAAAAAAATAATATAAATATAAA * * * * * * 2153917 ATAATATAAAT-ATATAAATAATTTAAATTTTAT 1 ATAATATAAATAAAAAAAATAATATAAATATAAA 2153950 ATAATATAAAT 1 ATAATATAAAT 2153961 TATTAAAATA Statistics Matches: 38, Mismatches: 6, Indels: 1 0.84 0.13 0.02 Matches are distributed among these distances: 33 27 0.71 34 11 0.29 ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36 Consensus pattern (34 bp): ATAATATAAATAAAAAAAATAATATAAATATAAA Found at i:2154004 original size:33 final size:30 Alignment explanation
Indices: 2153917--2154019 Score: 82 Period size: 32 Copynumber: 3.1 Consensus size: 30 2153907 TAAATATAAA 2153917 ATAATATAAATATATAAATAATTTAAATTTTAT 1 ATAATAT-AATATATAAAT-A-TTAAATTTTAT * 2153950 ATAATATAA-ATTATTAAAATATTAATTTTTATTT 1 ATAATATAATA-TA-T-AAATATTAAATTTTA--T * * 2153984 ATAATTATAATATATAAATATATAAATATAAT 1 ATAA-TATAATATATAAATAT-TAAATTTTAT 2154016 ATAA 1 ATAA 2154020 ATACTTGAAT Statistics Matches: 58, Mismatches: 4, Indels: 17 0.73 0.05 0.22 Matches are distributed among these distances: 31 1 0.02 32 18 0.31 33 15 0.26 34 16 0.28 35 7 0.12 36 1 0.02 ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46 Consensus pattern (30 bp): ATAATATAATATATAAATATTAAATTTTAT Found at i:2164125 original size:2 final size:2 Alignment explanation
Indices: 2164114--2164156 Score: 79 Period size: 2 Copynumber: 22.0 Consensus size: 2 2164104 TTCAAGCTTG 2164114 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2164155 AT 1 AT 2164157 TATTCTCTTT Statistics Matches: 40, Mismatches: 0, Indels: 2 0.95 0.00 0.05 Matches are distributed among these distances: 1 1 0.03 2 39 0.98 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): AT Found at i:2168978 original size:2 final size:2 Alignment explanation
Indices: 2168971--2169002 Score: 64 Period size: 2 Copynumber: 16.0 Consensus size: 2 2168961 AATAAGTGTT 2168971 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA 2169003 AGAGGATCTG Statistics Matches: 30, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 30 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): TA Found at i:2169820 original size:20 final size:18 Alignment explanation
Indices: 2169797--2169843 Score: 60 Period size: 18 Copynumber: 2.5 Consensus size: 18 2169787 ATAAAAACTT 2169797 ATAATTTTATATTTATTTTA 1 ATAATTTT-TATTT-TTTTA 2169817 ATAATTTTTATTTTTTT- 1 ATAATTTTTATTTTTTTA 2169834 ATAAATTTTT 1 AT-AATTTTT 2169844 TAATTAAATT Statistics Matches: 26, Mismatches: 0, Indels: 4 0.87 0.00 0.13 Matches are distributed among these distances: 17 2 0.08 18 11 0.42 19 5 0.19 20 8 0.31 ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68 Consensus pattern (18 bp): ATAATTTTTATTTTTTTA Found at i:2169843 original size:19 final size:20 Alignment explanation
Indices: 2169795--2169845 Score: 56 Period size: 19 Copynumber: 2.7 Consensus size: 20 2169785 ATATAAAAAC * 2169795 TTAT-AATTTTATATTTATT 1 TTATAAATTTTTTATTTATT 2169814 TTA-ATAA-TTTTTATTT-TT 1 TTATA-AATTTTTTATTTATT 2169832 TTATAAATTTTTTA 1 TTATAAATTTTTTA 2169846 ATTAAATTAA Statistics Matches: 27, Mismatches: 1, Indels: 8 0.75 0.03 0.22 Matches are distributed among these distances: 18 7 0.26 19 18 0.67 20 2 0.07 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (20 bp): TTATAAATTTTTTATTTATT Found at i:2171561 original size:2 final size:2 Alignment explanation
Indices: 2171554--2171590 Score: 74 Period size: 2 Copynumber: 18.5 Consensus size: 2 2171544 CATGAAAGTG 2171554 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T 2171591 TACTATAAAC Statistics Matches: 35, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 35 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (2 bp): TA Found at i:2172661 original size:2 final size:2 Alignment explanation
Indices: 2172654--2172731 Score: 122 Period size: 2 Copynumber: 39.5 Consensus size: 2 2172644 GGTGGAAACC * * * 2172654 AT AT AT AT -T AT AT AT AC AT AC AT AC AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2172695 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 2172732 AGCATGCCTC Statistics Matches: 69, Mismatches: 6, Indels: 2 0.90 0.08 0.03 Matches are distributed among these distances: 1 1 0.01 2 68 0.99 ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46 Consensus pattern (2 bp): AT Found at i:2174020 original size:21 final size:22 Alignment explanation
Indices: 2173972--2174023 Score: 61 Period size: 21 Copynumber: 2.4 Consensus size: 22 2173962 ATATTTAATA * * * 2173972 AATAAAAAATTATTTAAATTTT 1 AATATAAAATTATATAAATATT * 2173994 ATTATAAAA-TATATAAATATT 1 AATATAAAATTATATAAATATT 2174015 AATATAAAA 1 AATATAAAA 2174024 CTAGATTTTT Statistics Matches: 25, Mismatches: 5, Indels: 1 0.81 0.16 0.03 Matches are distributed among these distances: 21 18 0.72 22 7 0.28 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (22 bp): AATATAAAATTATATAAATATT Found at i:2176610 original size:24 final size:23 Alignment explanation
Indices: 2176576--2176621 Score: 65 Period size: 24 Copynumber: 2.0 Consensus size: 23 2176566 TATTATAATT 2176576 ATAAAAATAATTAATAATTAAAA 1 ATAAAAATAATTAATAATTAAAA * * 2176599 ATAAAAATTAATTATTATTTAAA 1 ATAAAAA-TAATTAATAATTAAA 2176622 TATTTAATTT Statistics Matches: 20, Mismatches: 2, Indels: 1 0.87 0.09 0.04 Matches are distributed among these distances: 23 7 0.35 24 13 0.65 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (23 bp): ATAAAAATAATTAATAATTAAAA Found at i:2176641 original size:16 final size:15 Alignment explanation
Indices: 2176619--2176669 Score: 50 Period size: 16 Copynumber: 3.2 Consensus size: 15 2176609 ATTATTATTT 2176619 AAATATTTAATTTTA 1 AAATATTTAATTTTA * 2176634 AAATTATTT-ATTTATC 1 AAA-TATTTAATTT-TA 2176650 AAATATATTATATTTTA 1 AAATAT-TTA-ATTTTA 2176667 AAA 1 AAA 2176670 ATAAATAAAT Statistics Matches: 29, Mismatches: 2, Indels: 8 0.74 0.05 0.21 Matches are distributed among these distances: 15 10 0.34 16 11 0.38 17 4 0.14 18 4 0.14 ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51 Consensus pattern (15 bp): AAATATTTAATTTTA Found at i:2176645 original size:31 final size:33 Alignment explanation
Indices: 2176602--2176669 Score: 88 Period size: 31 Copynumber: 2.1 Consensus size: 33 2176592 ATTAAAAATA * 2176602 AAAATTAATTA-TTATTTAAATAT-TTA-ATTTT 1 AAAATTAATTATTTA-TCAAATATATTATATTTT * 2176633 AAAATTATTTATTTATCAAATATATTATATTTT 1 AAAATTAATTATTTATCAAATATATTATATTTT 2176666 AAAA 1 AAAA 2176670 ATAAATAAAT Statistics Matches: 32, Mismatches: 2, Indels: 4 0.84 0.05 0.11 Matches are distributed among these distances: 31 17 0.53 32 6 0.19 33 9 0.28 ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51 Consensus pattern (33 bp): AAAATTAATTATTTATCAAATATATTATATTTT Found at i:2176675 original size:22 final size:24 Alignment explanation
Indices: 2176650--2176693 Score: 65 Period size: 22 Copynumber: 1.9 Consensus size: 24 2176640 TTTATTTATC * 2176650 AAATATATTATAT-T-TTAAAAAT 1 AAATAAATTATATATATTAAAAAT 2176672 AAATAAATTATATATATTAAAA 1 AAATAAATTATATATATTAAAA 2176694 TTTTATTTTC Statistics Matches: 19, Mismatches: 1, Indels: 2 0.86 0.05 0.09 Matches are distributed among these distances: 22 12 0.63 23 1 0.05 24 6 0.32 ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41 Consensus pattern (24 bp): AAATAAATTATATATATTAAAAAT Found at i:2177542 original size:15 final size:16 Alignment explanation
Indices: 2177524--2177559 Score: 56 Period size: 15 Copynumber: 2.3 Consensus size: 16 2177514 TAAATGAGTC * 2177524 TTTTTTTAATTTAA-A 1 TTTTTTTAACTTAATA 2177539 TTTTTTTAACTTAATA 1 TTTTTTTAACTTAATA 2177555 TTTTT 1 TTTTT 2177560 ATTTAAGCTC Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 15 13 0.68 16 6 0.32 ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69 Consensus pattern (16 bp): TTTTTTTAACTTAATA Found at i:2177729 original size:17 final size:17 Alignment explanation
Indices: 2177709--2177749 Score: 57 Period size: 17 Copynumber: 2.4 Consensus size: 17 2177699 AATGAATCTA 2177709 TTTTTTACTTAAT-TTT 1 TTTTTTACTTAATATTT 2177725 TTTTTTAACTTAATATTT 1 TTTTTT-ACTTAATATTT * 2177743 TTATTTA 1 TTTTTTA 2177750 TATTCTTCTA Statistics Matches: 22, Mismatches: 1, Indels: 3 0.85 0.04 0.12 Matches are distributed among these distances: 16 6 0.27 17 8 0.36 18 8 0.36 ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71 Consensus pattern (17 bp): TTTTTTACTTAATATTT Found at i:2178722 original size:2 final size:2 Alignment explanation
Indices: 2178715--2178748 Score: 68 Period size: 2 Copynumber: 17.0 Consensus size: 2 2178705 AAGTAACCCA 2178715 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT 2178749 GTGTGTAGAT Statistics Matches: 32, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 32 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (2 bp): AT Found at i:2180047 original size:19 final size:17 Alignment explanation
Indices: 2180015--2180053 Score: 60 Period size: 19 Copynumber: 2.2 Consensus size: 17 2180005 CAGACTTTTA 2180015 ATTTAATATTTTTAAAT 1 ATTTAATATTTTTAAAT 2180032 ATTTAATATATATTTAAAT 1 ATTTAATAT-T-TTTAAAT 2180051 ATT 1 ATT 2180054 AAGTTTAATG Statistics Matches: 20, Mismatches: 0, Indels: 2 0.91 0.00 0.09 Matches are distributed among these distances: 17 9 0.45 18 1 0.05 19 10 0.50 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (17 bp): ATTTAATATTTTTAAAT Found at i:2180697 original size:2 final size:2 Alignment explanation
Indices: 2180690--2180720 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 2180680 TGAAATTCAA 2180690 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A 2180721 AGATAAACCC Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48 Consensus pattern (2 bp): AT Found at i:2181917 original size:16 final size:17 Alignment explanation
Indices: 2181889--2181926 Score: 53 Period size: 16 Copynumber: 2.4 Consensus size: 17 2181879 TATTATATAA 2181889 ATTT-TATTAAATTTAT 1 ATTTATATTAAATTTAT * 2181905 ATTTATATT-AATTTTT 1 ATTTATATTAAATTTAT 2181921 ATTTAT 1 ATTTAT 2181927 TTTTATAGTA Statistics Matches: 20, Mismatches: 1, Indels: 2 0.87 0.04 0.09 Matches are distributed among these distances: 16 16 0.80 17 4 0.20 ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66 Consensus pattern (17 bp): ATTTATATTAAATTTAT Found at i:2181923 original size:27 final size:27 Alignment explanation
Indices: 2181864--2181919 Score: 71 Period size: 26 Copynumber: 2.1 Consensus size: 27 2181854 TAATTTTTAA * 2181864 TTTATTAAAAGTTTTTATTATATAAAT 1 TTTATTAAAAGTTTATATTATATAAAT * 2181891 TTTATT-AAA-TTTATATTTATATTAAT 1 TTTATTAAAAGTTTATA-TTATATAAAT 2181917 TTT 1 TTT 2181920 TATTTATTTT Statistics Matches: 26, Mismatches: 2, Indels: 3 0.84 0.06 0.10 Matches are distributed among these distances: 25 5 0.19 26 15 0.58 27 6 0.23 ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61 Consensus pattern (27 bp): TTTATTAAAAGTTTATATTATATAAAT Found at i:2182458 original size:7 final size:7 Alignment explanation
Indices: 2182448--2182473 Score: 52 Period size: 7 Copynumber: 3.7 Consensus size: 7 2182438 ACCTTTGAGC 2182448 TTTCACA 1 TTTCACA 2182455 TTTCACA 1 TTTCACA 2182462 TTTCACA 1 TTTCACA 2182469 TTTCA 1 TTTCA 2182474 ATGCGATACC Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 19 1.00 ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46 Consensus pattern (7 bp): TTTCACA Found at i:2187026 original size:2 final size:2 Alignment explanation
Indices: 2187019--2187049 Score: 62 Period size: 2 Copynumber: 15.5 Consensus size: 2 2187009 GTTTATTAAT 2187019 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T 1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T 2187050 TGTGTCTGCA Statistics Matches: 29, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 29 1.00 ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52 Consensus pattern (2 bp): TC Found at i:2195955 original size:13 final size:13 Alignment explanation
Indices: 2195939--2195972 Score: 50 Period size: 13 Copynumber: 2.5 Consensus size: 13 2195929 TAAATGTGAA 2195939 AAAAATTAAAAAT 1 AAAAATTAAAAAT * 2195952 AAAAATTAAATAT 1 AAAAATTAAAAAT 2195965 AATAAATT 1 AA-AAATT 2195973 TATGATAAAT Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 13 14 0.74 14 5 0.26 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (13 bp): AAAAATTAAAAAT Found at i:2195970 original size:16 final size:15 Alignment explanation
Indices: 2195919--2195966 Score: 55 Period size: 16 Copynumber: 3.3 Consensus size: 15 2195909 ACGTATACTC 2195919 ATAAAAAAATTAAAT 1 ATAAAAAAATTAAAT * 2195934 GTGAAAAAAATTAAA- 1 AT-AAAAAAATTAAAT * 2195949 A-ATAAAAATTAAAT 1 ATAAAAAAATTAAAT 2195963 ATAA 1 ATAA 2195967 TAAATTTATG Statistics Matches: 26, Mismatches: 4, Indels: 6 0.72 0.11 0.17 Matches are distributed among these distances: 13 11 0.42 14 1 0.04 15 2 0.08 16 12 0.46 ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25 Consensus pattern (15 bp): ATAAAAAAATTAAAT Found at i:2195992 original size:18 final size:20 Alignment explanation
Indices: 2195958--2195999 Score: 61 Period size: 18 Copynumber: 2.2 Consensus size: 20 2195948 AAATAAAAAT 2195958 TAAATATAATAAATTTATGA 1 TAAATATAATAAATTTATGA * 2195978 TAAATAT-AT-AATTTATTA 1 TAAATATAATAAATTTATGA 2195996 TAAA 1 TAAA 2196000 AAATTTAATA Statistics Matches: 21, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 18 12 0.57 19 2 0.10 20 7 0.33 ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43 Consensus pattern (20 bp): TAAATATAATAAATTTATGA Found at i:2196213 original size:17 final size:16 Alignment explanation
Indices: 2196191--2196233 Score: 61 Period size: 16 Copynumber: 2.7 Consensus size: 16 2196181 GAATAATTAA 2196191 AAAATATATAAAAAAAG 1 AAAATA-ATAAAAAAAG * 2196208 AAAATAATTAAAAAAG 1 AAAATAATAAAAAAAG 2196224 AAAA-AATAAA 1 AAAATAATAAA 2196234 GAGTAGTGAA Statistics Matches: 24, Mismatches: 2, Indels: 2 0.86 0.07 0.07 Matches are distributed among these distances: 15 5 0.21 16 13 0.54 17 6 0.25 ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16 Consensus pattern (16 bp): AAAATAATAAAAAAAG Found at i:2196616 original size:16 final size:17 Alignment explanation
Indices: 2196591--2196625 Score: 54 Period size: 17 Copynumber: 2.1 Consensus size: 17 2196581 TTTATTATTT 2196591 AATTTATA-TTTAAATA 1 AATTTATATTTTAAATA * 2196607 AATTTTTATTTTAAATA 1 AATTTATATTTTAAATA 2196624 AA 1 AA 2196626 ATATTAATTT Statistics Matches: 17, Mismatches: 1, Indels: 1 0.89 0.05 0.05 Matches are distributed among these distances: 16 7 0.41 17 10 0.59 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (17 bp): AATTTATATTTTAAATA Found at i:2196636 original size:17 final size:17 Alignment explanation
Indices: 2196598--2196636 Score: 51 Period size: 17 Copynumber: 2.3 Consensus size: 17 2196588 TTTAATTTAT * * 2196598 ATTTAAATAAATTTTTA 1 ATTTAAATAAAATATTA * 2196615 TTTTAAATAAAATATTA 1 ATTTAAATAAAATATTA 2196632 ATTTA 1 ATTTA 2196637 TGTTTAGACA Statistics Matches: 18, Mismatches: 4, Indels: 0 0.82 0.18 0.00 Matches are distributed among these distances: 17 18 1.00 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (17 bp): ATTTAAATAAAATATTA Found at i:2196780 original size:35 final size:36 Alignment explanation
Indices: 2196717--2196790 Score: 98 Period size: 35 Copynumber: 2.1 Consensus size: 36 2196707 AGTTAATCTG * * 2196717 ATTTAAATTATTATTTAATAATAAAAAA-TATTTTT 1 ATTTAAATTATAATTTAAAAATAAAAAATTATTTTT * 2196752 ATTTAAATT-TAATTATAAAAATATAAAATTATTTTT 1 ATTTAAATTATAATT-TAAAAATAAAAAATTATTTTT 2196788 ATT 1 ATT 2196791 ATTTATTCAT Statistics Matches: 34, Mismatches: 3, Indels: 3 0.85 0.08 0.08 Matches are distributed among these distances: 34 4 0.12 35 20 0.59 36 10 0.29 ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51 Consensus pattern (36 bp): ATTTAAATTATAATTTAAAAATAAAAAATTATTTTT Found at i:2197640 original size:22 final size:23 Alignment explanation
Indices: 2197601--2197653 Score: 67 Period size: 22 Copynumber: 2.4 Consensus size: 23 2197591 AATTTTTTAT 2197601 TTAAAT-TTAATTATAAAAATATA 1 TTAAATATTAATTAT-AAAATATA * 2197624 TT-AATATTAA-TATAAAATATT 1 TTAAATATTAATTATAAAATATA 2197645 TTAAATATT 1 TTAAATATT 2197654 TTTAAAAAAA Statistics Matches: 27, Mismatches: 1, Indels: 5 0.82 0.03 0.15 Matches are distributed among these distances: 21 9 0.33 22 12 0.44 23 6 0.22 ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47 Consensus pattern (23 bp): TTAAATATTAATTATAAAATATA Found at i:2197661 original size:21 final size:20 Alignment explanation
Indices: 2197613--2197653 Score: 55 Period size: 21 Copynumber: 1.9 Consensus size: 20 2197603 AAATTTAATT 2197613 ATAAAAATATATTAATATTA 1 ATAAAAATATATTAATATTA * 2197633 ATATAAAATATTTTAAATATT 1 ATA-AAAATATATT-AATATT 2197654 TTTAAAAAAA Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 20 3 0.17 21 9 0.50 22 6 0.33 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (20 bp): ATAAAAATATATTAATATTA Found at i:2197662 original size:22 final size:21 Alignment explanation
Indices: 2197615--2197662 Score: 51 Period size: 22 Copynumber: 2.2 Consensus size: 21 2197605 ATTTAATTAT 2197615 AAAAATATATTAATATTAATA 1 AAAAATATATTAATATTAATA * * ** 2197636 TAAAATATTTTAAATATTTTTA 1 AAAAATATATT-AATATTAATA 2197658 AAAAA 1 AAAAA 2197663 AATTATTTTT Statistics Matches: 21, Mismatches: 5, Indels: 1 0.78 0.19 0.04 Matches are distributed among these distances: 21 9 0.43 22 12 0.57 ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42 Consensus pattern (21 bp): AAAAATATATTAATATTAATA Found at i:2204994 original size:43 final size:43 Alignment explanation
Indices: 2204933--2205019 Score: 156 Period size: 43 Copynumber: 2.0 Consensus size: 43 2204923 AGATTAAATT 2204933 CTTAATAGTAATTTTATGTGTGAAGGAAGATGGAAACCAAAAG 1 CTTAATAGTAATTTTATGTGTGAAGGAAGATGGAAACCAAAAG * * 2204976 CTTAATAGTAGTTTTATGTGTGAAGGAAGATGGAAACGAAAAG 1 CTTAATAGTAATTTTATGTGTGAAGGAAGATGGAAACCAAAAG 2205019 C 1 C 2205020 AAAAACTTCA Statistics Matches: 42, Mismatches: 2, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 43 42 1.00 ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28 Consensus pattern (43 bp): CTTAATAGTAATTTTATGTGTGAAGGAAGATGGAAACCAAAAG Found at i:2209995 original size:3 final size:3 Alignment explanation
Indices: 2209987--2210017 Score: 62 Period size: 3 Copynumber: 10.3 Consensus size: 3 2209977 TCGAACAAGA 2209987 CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT C 1 CGT CGT CGT CGT CGT CGT CGT CGT CGT CGT C 2210018 TTCATCATCA Statistics Matches: 28, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 28 1.00 ACGTcount: A:0.00, C:0.35, G:0.32, T:0.32 Consensus pattern (3 bp): CGT Found at i:2210040 original size:3 final size:3 Alignment explanation
Indices: 2210034--2210071 Score: 67 Period size: 3 Copynumber: 12.7 Consensus size: 3 2210024 ATCATCATCA * 2210034 TCT TCT TCT TCT TCT TCT CCT TCT TCT TCT TCT TCT TC 1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC 2210072 AACAGCGTCG Statistics Matches: 33, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 3 33 1.00 ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63 Consensus pattern (3 bp): TCT Found at i:2210098 original size:18 final size:18 Alignment explanation
Indices: 2210077--2210111 Score: 52 Period size: 18 Copynumber: 1.9 Consensus size: 18 2210067 TCTTCAACAG * * 2210077 CGTCGTCTTCGTTGTCAT 1 CGTCATCTTCGTCGTCAT 2210095 CGTCATCTTCGTCGTCA 1 CGTCATCTTCGTCGTCA 2210112 AGATCAACGG Statistics Matches: 15, Mismatches: 2, Indels: 0 0.88 0.12 0.00 Matches are distributed among these distances: 18 15 1.00 ACGTcount: A:0.09, C:0.31, G:0.20, T:0.40 Consensus pattern (18 bp): CGTCATCTTCGTCGTCAT Found at i:2210333 original size:3 final size:3 Alignment explanation
Indices: 2210312--2210366 Score: 85 Period size: 3 Copynumber: 18.0 Consensus size: 3 2210302 TATGATTTAC 2210312 TAT TATT TACT TAT T-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 1 TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT 2210358 TAT TAT TAT 1 TAT TAT TAT 2210367 ATACATATTT Statistics Matches: 49, Mismatches: 1, Indels: 4 0.91 0.02 0.07 Matches are distributed among these distances: 2 2 0.04 3 41 0.84 4 6 0.12 ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67 Consensus pattern (3 bp): TAT Found at i:2210838 original size:15 final size:16 Alignment explanation
Indices: 2210802--2210841 Score: 55 Period size: 15 Copynumber: 2.5 Consensus size: 16 2210792 TTTAATATTT * 2210802 ATAAAATTTTTAATTAA 1 ATAAAA-TTATAATTAA 2210819 ATAAAATTATAATT-A 1 ATAAAATTATAATTAA 2210834 ATAAAATT 1 ATAAAATT 2210842 TATTTAAAAA Statistics Matches: 22, Mismatches: 1, Indels: 2 0.88 0.04 0.08 Matches are distributed among these distances: 15 9 0.41 16 7 0.32 17 6 0.27 ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42 Consensus pattern (16 bp): ATAAAATTATAATTAA Found at i:2210844 original size:16 final size:17 Alignment explanation
Indices: 2210802--2210844 Score: 63 Period size: 16 Copynumber: 2.6 Consensus size: 17 2210792 TTTAATATTT * 2210802 ATAAAATTTTTAATTAA 1 ATAAAATTTATAATTAA 2210819 ATAAAA-TTATAATT-A 1 ATAAAATTTATAATTAA 2210834 ATAAAATTTAT 1 ATAAAATTTAT 2210845 TTAAAAATAA Statistics Matches: 24, Mismatches: 1, Indels: 3 0.86 0.04 0.11 Matches are distributed among these distances: 15 7 0.29 16 11 0.46 17 6 0.25 ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44 Consensus pattern (17 bp): ATAAAATTTATAATTAA Found at i:2210903 original size:18 final size:18 Alignment explanation
Indices: 2210877--2210912 Score: 54 Period size: 18 Copynumber: 2.0 Consensus size: 18 2210867 ATTAACACAT * * 2210877 AAATTTTTTACTAAATTA 1 AAATATTTTAATAAATTA 2210895 AAATATTTTAATAAATTA 1 AAATATTTTAATAAATTA 2210913 TATACAACAA Statistics Matches: 16, Mismatches: 2, Indels: 0 0.89 0.11 0.00 Matches are distributed among these distances: 18 16 1.00 ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47 Consensus pattern (18 bp): AAATATTTTAATAAATTA Found at i:2211082 original size:18 final size:19 Alignment explanation
Indices: 2211043--2211085 Score: 61 Period size: 19 Copynumber: 2.3 Consensus size: 19 2211033 AACTCAATAT * 2211043 ATATAAAAATTAATACGCA 1 ATATAAAAAATAATACGCA * 2211062 ATATAAAAAATAATATG-A 1 ATATAAAAAATAATACGCA 2211080 ATATAA 1 ATATAA 2211086 CACGAATATA Statistics Matches: 22, Mismatches: 2, Indels: 1 0.88 0.08 0.04 Matches are distributed among these distances: 18 7 0.32 19 15 0.68 ACGTcount: A:0.63, C:0.05, G:0.05, T:0.28 Consensus pattern (19 bp): ATATAAAAAATAATACGCA Found at i:2212190 original size:14 final size:15 Alignment explanation
Indices: 2212167--2212226 Score: 72 Period size: 14 Copynumber: 4.1 Consensus size: 15 2212157 AACACAATTT 2212167 TTTCTC-TTTTTTTC 1 TTTCTCTTTTTTTTC * 2212181 TTTCT-TTTTTCTTTT 1 TTTCTCTTTTT-TTTC * 2212196 TTTCTCTTTATTTT- 1 TTTCTCTTTTTTTTC 2212210 TTTCTCTTTTTTTTC 1 TTTCTCTTTTTTTTC 2212225 TT 1 TT 2212227 GGTTGAACTC Statistics Matches: 39, Mismatches: 3, Indels: 7 0.80 0.06 0.14 Matches are distributed among these distances: 14 22 0.56 15 13 0.33 16 4 0.10 ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82 Consensus pattern (15 bp): TTTCTCTTTTTTTTC Found at i:2212209 original size:19 final size:19 Alignment explanation
Indices: 2212171--2212209 Score: 53 Period size: 19 Copynumber: 2.1 Consensus size: 19 2212161 CAATTTTTTC * 2212171 TCTTTTTTTCTTTCTTTTT 1 TCTTTTTTTCTTTCTATTT 2212190 TCTTTTTTTCTCTT-TATTT 1 TCTTTTTTTCT-TTCTATTT 2212209 T 1 T 2212210 TTTCTCTTTT Statistics Matches: 18, Mismatches: 1, Indels: 2 0.86 0.05 0.10 Matches are distributed among these distances: 19 16 0.89 20 2 0.11 ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82 Consensus pattern (19 bp): TCTTTTTTTCTTTCTATTT Found at i:2212213 original size:29 final size:30 Alignment explanation
Indices: 2212164--2212220 Score: 91 Period size: 29 Copynumber: 1.9 Consensus size: 30 2212154 ACAAACACAA 2212164 TTTTTTCTCTTTTTTTCTTTCT-TTTTTCT 1 TTTTTTCTCTTTTTTTCTTTCTCTTTTTCT 2212193 TTTTTTCTCTTTATTTT-TTTCTCTTTTT 1 TTTTTTCTCTTT-TTTTCTTTCTCTTTTT 2212221 TTTCTTGGTT Statistics Matches: 26, Mismatches: 0, Indels: 3 0.90 0.00 0.10 Matches are distributed among these distances: 29 17 0.65 30 9 0.35 ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82 Consensus pattern (30 bp): TTTTTTCTCTTTTTTTCTTTCTCTTTTTCT Found at i:2212222 original size:10 final size:10 Alignment explanation
Indices: 2212164--2212209 Score: 60 Period size: 10 Copynumber: 4.6 Consensus size: 10 2212154 ACAAACACAA 2212164 TTTTTTCTCT 1 TTTTTTCTCT 2212174 TTTTTTCT-T 1 TTTTTTCTCT 2212183 TCTTTTT-TCT 1 T-TTTTTCTCT 2212193 TTTTTTCTCT 1 TTTTTTCTCT 2212203 TTATTTT 1 TT-TTTT 2212210 TTTCTCTTTT Statistics Matches: 32, Mismatches: 0, Indels: 7 0.82 0.00 0.18 Matches are distributed among these distances: 9 8 0.25 10 20 0.62 11 4 0.12 ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83 Consensus pattern (10 bp): TTTTTTCTCT Found at i:2213034 original size:6 final size:7 Alignment explanation
Indices: 2213016--2213043 Score: 56 Period size: 7 Copynumber: 4.0 Consensus size: 7 2213006 AACCTTTTAA 2213016 TAAAAAT 1 TAAAAAT 2213023 TAAAAAT 1 TAAAAAT 2213030 TAAAAAT 1 TAAAAAT 2213037 TAAAAAT 1 TAAAAAT 2213044 AATTAATAAA Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 7 21 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (7 bp): TAAAAAT Found at i:2213612 original size:25 final size:25 Alignment explanation
Indices: 2213550--2213616 Score: 59 Period size: 24 Copynumber: 2.6 Consensus size: 25 2213540 TGATTTCAAC 2213550 AAAAATACACAAATATAAAAAAATTATT 1 AAAAATA-A-AAATAT-AAAAAATTATT * * 2213578 -AAAACAAAAATATAAAATATT-TT 1 AAAAATAAAAATATAAAAAATTATT 2213601 AAAAATATAAAA-ATAA 1 AAAAATA-AAAATATAA 2213617 TATAAATGAA Statistics Matches: 34, Mismatches: 3, Indels: 8 0.76 0.07 0.18 Matches are distributed among these distances: 23 2 0.06 24 16 0.47 25 10 0.29 26 1 0.03 27 5 0.15 ACGTcount: A:0.70, C:0.04, G:0.00, T:0.25 Consensus pattern (25 bp): AAAAATAAAAATATAAAAAATTATT Found at i:2213622 original size:19 final size:18 Alignment explanation
Indices: 2213583--2213622 Score: 53 Period size: 19 Copynumber: 2.2 Consensus size: 18 2213573 TTATTAAAAC * * 2213583 AAAAATATAAAATATTTT 1 AAAAATATAAAATAATAT 2213601 AAAAATATAAAAATAATAT 1 AAAAATAT-AAAATAATAT 2213620 AAA 1 AAA 2213623 TGAAACATGA Statistics Matches: 19, Mismatches: 2, Indels: 1 0.86 0.09 0.05 Matches are distributed among these distances: 18 8 0.42 19 11 0.58 ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30 Consensus pattern (18 bp): AAAAATATAAAATAATAT Found at i:2214055 original size:26 final size:26 Alignment explanation
Indices: 2214020--2214078 Score: 68 Period size: 26 Copynumber: 2.3 Consensus size: 26 2214010 ATATCAAGAC * * * 2214020 ATAATAAAAATACAACATAAATAAA-A 1 ATAATTAAAACACAACACAAA-AAATA 2214046 ATAATTAAAACACAACACAAAAAATA 1 ATAATTAAAACACAACACAAAAAATA 2214072 AT-ATTAA 1 ATAATTAA 2214079 CACAATATAA Statistics Matches: 29, Mismatches: 3, Indels: 3 0.83 0.09 0.09 Matches are distributed among these distances: 25 8 0.28 26 21 0.72 ACGTcount: A:0.69, C:0.10, G:0.00, T:0.20 Consensus pattern (26 bp): ATAATTAAAACACAACACAAAAAATA Found at i:2214091 original size:24 final size:24 Alignment explanation
Indices: 2214064--2214128 Score: 62 Period size: 24 Copynumber: 2.7 Consensus size: 24 2214054 AACACAACAC * 2214064 AAAAAATAATATTAACACAATATA 1 AAAAAATAATATTAACAAAATATA * * 2214088 AAAACATAA-ACTTATCAAAATATA 1 AAAAAATAATA-TTAACAAAATATA * 2214112 TAAAAA-AATAATTAACA 1 AAAAAATAAT-ATTAACA 2214129 TCAAAATTTT Statistics Matches: 32, Mismatches: 6, Indels: 6 0.73 0.14 0.14 Matches are distributed among these distances: 23 3 0.09 24 28 0.88 25 1 0.03 ACGTcount: A:0.66, C:0.09, G:0.00, T:0.25 Consensus pattern (24 bp): AAAAAATAATATTAACAAAATATA Found at i:2214174 original size:20 final size:21 Alignment explanation
Indices: 2214151--2214214 Score: 85 Period size: 22 Copynumber: 3.0 Consensus size: 21 2214141 ATAAATTTTT * 2214151 AATATTTTAAATAT-ATAAAA 1 AATAATTTAAATATAATAAAA * 2214171 AATAATATAAATATAATATAAA 1 AATAATTTAAATATAATA-AAA * 2214193 AATAATTAAAATATAATAAAA 1 AATAATTTAAATATAATAAAA 2214214 A 1 A 2214215 TTAAATATGA Statistics Matches: 38, Mismatches: 4, Indels: 3 0.84 0.09 0.07 Matches are distributed among these distances: 20 12 0.32 21 7 0.18 22 19 0.50 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (21 bp): AATAATTTAAATATAATAAAA Found at i:2214185 original size:6 final size:6 Alignment explanation
Indices: 2214174--2214322 Score: 73 Period size: 6 Copynumber: 25.7 Consensus size: 6 2214164 TATAAAAAAT * * * 2214174 AATATA AATAT- AATATA AAAATA ATTA-A AATAT- AATAAA AAT-TA 1 AATATA AATATA AATATA AATATA AATATA AATATA AATATA AATATA * * * * * * 2214218 AATAT- GACATA AATATA AA-A-A CATAAA ATATATA AATATTA TATAAA 1 AATATA AATATA AATATA AATATA AATATA A-ATATA AATA-TA AATATA * * * * * 2214265 AATTTA AA-AT- ACTTTA AATAATA AAAAAA TAATATA AATATA AATATA 1 AATATA AATATA AATATA AAT-ATA AATATA -AATATA AATATA AATATA 2214313 AATATA AATA 1 AATATA AATA 2214323 CCTCTTCCCG Statistics Matches: 103, Mismatches: 27, Indels: 26 0.66 0.17 0.17 Matches are distributed among these distances: 4 3 0.03 5 24 0.23 6 58 0.56 7 18 0.17 ACGTcount: A:0.66, C:0.02, G:0.01, T:0.32 Consensus pattern (6 bp): AATATA Found at i:2214205 original size:17 final size:17 Alignment explanation
Indices: 2214166--2214219 Score: 58 Period size: 17 Copynumber: 3.2 Consensus size: 17 2214156 TTTAAATATA * * 2214166 TAAAAAATAATATAAA- 1 TAAAATATAATAAAAAT * 2214182 TATAATATAA-AAATAAT 1 TAAAATATAATAAA-AAT 2214199 TAAAATATAATAAAAAT 1 TAAAATATAATAAAAAT 2214216 TAAA 1 TAAA 2214220 TATGACATAA Statistics Matches: 31, Mismatches: 4, Indels: 5 0.77 0.10 0.12 Matches are distributed among these distances: 15 2 0.06 16 10 0.32 17 16 0.52 18 3 0.10 ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30 Consensus pattern (17 bp): TAAAATATAATAAAAAT Found at i:2214215 original size:11 final size:11 Alignment explanation
Indices: 2214159--2214215 Score: 66 Period size: 11 Copynumber: 5.4 Consensus size: 11 2214149 TTAATATTTT 2214159 AAATAT-ATAA 1 AAATATAATAA * 2214169 AAA-ATAATAT 1 AAATATAATAA 2214179 AAATATAATATA 1 AAATATAATA-A * 2214191 AAA-ATAATTA 1 AAATATAATAA 2214201 AAATATAATAA 1 AAATATAATAA 2214212 AAAT 1 AAAT 2214216 TAAATATGAC Statistics Matches: 39, Mismatches: 4, Indels: 7 0.78 0.08 0.14 Matches are distributed among these distances: 9 2 0.05 10 13 0.33 11 21 0.54 12 3 0.08 ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30 Consensus pattern (11 bp): AAATATAATAA Found at i:2214262 original size:28 final size:29 Alignment explanation
Indices: 2214230--2214284 Score: 76 Period size: 28 Copynumber: 1.9 Consensus size: 29 2214220 TATGACATAA 2214230 ATATAAAAACATAAAATA-TATAAATATT 1 ATATAAAAACATAAAATACTATAAATATT ** * 2214258 ATATAAAAATTTAAAATACTTTAAATA 1 ATATAAAAACATAAAATACTATAAATA 2214285 ATAAAAAAAT Statistics Matches: 23, Mismatches: 3, Indels: 1 0.85 0.11 0.04 Matches are distributed among these distances: 28 16 0.70 29 7 0.30 ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35 Consensus pattern (29 bp): ATATAAAAACATAAAATACTATAAATATT Found at i:2216834 original size:38 final size:37 Alignment explanation
Indices: 2216792--2216874 Score: 107 Period size: 38 Copynumber: 2.3 Consensus size: 37 2216782 TTGTTAATCT * 2216792 TAAAATAATAA-TAATAAAAT-AAATTTATATTAATA 1 TAAAATAATAATTAATAAAATAAAATTTATATAAATA * * * 2216827 TAATAAAAATAATTAATATATTAAAATTTATATAAATA 1 TAA-AATAATAATTAATAAAATAAAATTTATATAAATA 2216865 TAAAATAATA 1 TAAAATAATA 2216875 TAAATTTAAT Statistics Matches: 40, Mismatches: 5, Indels: 4 0.82 0.10 0.08 Matches are distributed among these distances: 35 3 0.08 36 7 0.17 37 13 0.32 38 17 0.43 ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37 Consensus pattern (37 bp): TAAAATAATAATTAATAAAATAAAATTTATATAAATA Found at i:2216840 original size:24 final size:26 Alignment explanation
Indices: 2216797--2216850 Score: 69 Period size: 24 Copynumber: 2.1 Consensus size: 26 2216787 AATCTTAAAA 2216797 TAATAATAATAAAATAAATT-TATAT 1 TAATAATAATAAAATAAATTATATAT 2216822 TAAT-ATAATAAAA-ATAATTAATATAT 1 TAATAATAATAAAATA-AATT-ATATAT 2216848 TAA 1 TAA 2216851 AATTTATATA Statistics Matches: 26, Mismatches: 0, Indels: 5 0.84 0.00 0.16 Matches are distributed among these distances: 23 1 0.04 24 13 0.50 25 4 0.15 26 8 0.31 ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39 Consensus pattern (26 bp): TAATAATAATAAAATAAATTATATAT Found at i:2216865 original size:18 final size:19 Alignment explanation
Indices: 2216791--2216877 Score: 60 Period size: 18 Copynumber: 4.8 Consensus size: 19 2216781 TTTGTTAATC * 2216791 TTAAAA-TAATAATAATAAA 1 TTAAAATTAAT-ATAATATA * * 2216810 AT-AAATTTATATTAATATA 1 TTAAAATTAATA-TAATATA * * 2216829 ATAAAAATAAT-TAATATA 1 TTAAAATTAATATAATATA * 2216847 TTAAAATTTATATAA-ATA 1 TTAAAATTAATATAATATA 2216865 -TAAAA-TAATATAA 1 TTAAAATTAATATAA 2216878 ATTTAATTAT Statistics Matches: 55, Mismatches: 9, Indels: 11 0.73 0.12 0.15 Matches are distributed among these distances: 16 7 0.13 17 5 0.09 18 22 0.40 19 15 0.27 20 6 0.11 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (19 bp): TTAAAATTAATATAATATA Found at i:2216888 original size:30 final size:30 Alignment explanation
Indices: 2216794--2216888 Score: 79 Period size: 33 Copynumber: 3.0 Consensus size: 30 2216784 GTTAATCTTA * 2216794 AAATAATAATAATAAAATAAATTTATATTA-AT 1 AAAT-ATAA-AATAATATAAATTTA-ATTATAT 2216826 ATAATA-AAAATAAT-TAATATATTAAAATTTATAT 1 A-AATATAAAATAATATAA-AT-TT--AA-TTATAT 2216860 AAATATAAAATAATATAAATTTAATTATA 1 AAATATAAAATAATATAAATTTAATTATA 2216889 ATTTAATGAA Statistics Matches: 53, Mismatches: 1, Indels: 20 0.72 0.01 0.27 Matches are distributed among these distances: 29 3 0.06 30 12 0.23 31 6 0.11 32 3 0.06 33 13 0.25 34 13 0.25 35 3 0.06 ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39 Consensus pattern (30 bp): AAATATAAAATAATATAAATTTAATTATAT Found at i:2219862 original size:14 final size:13 Alignment explanation
Indices: 2219838--2219876 Score: 51 Period size: 14 Copynumber: 2.8 Consensus size: 13 2219828 TAACATAATT 2219838 ATATAATATAAAAA 1 ATAT-ATATAAAAA 2219852 ATAATATATAAAAA 1 AT-ATATATAAAAA * 2219866 ATTTATATAAA 1 ATATATATAAA 2219877 TATATAAATA Statistics Matches: 23, Mismatches: 1, Indels: 3 0.85 0.04 0.11 Matches are distributed among these distances: 13 8 0.35 14 13 0.57 15 2 0.09 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (13 bp): ATATATATAAAAA Found at i:2219872 original size:13 final size:14 Alignment explanation
Indices: 2219843--2219876 Score: 52 Period size: 14 Copynumber: 2.5 Consensus size: 14 2219833 TAATTATATA 2219843 ATATAAAAAATAAT 1 ATATAAAAAATAAT * 2219857 ATATAAAAAAT-TT 1 ATATAAAAAATAAT 2219870 ATATAAA 1 ATATAAA 2219877 TATATAAATA Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 13 8 0.42 14 11 0.58 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (14 bp): ATATAAAAAATAAT Found at i:2219878 original size:21 final size:21 Alignment explanation
Indices: 2219854--2219895 Score: 75 Period size: 21 Copynumber: 2.0 Consensus size: 21 2219844 TATAAAAAAT 2219854 AATATATAAAAAATTTATATA 1 AATATATAAAAAATTTATATA * 2219875 AATATATAAATAATTTATATA 1 AATATATAAAAAATTTATATA 2219896 TAATTATCCT Statistics Matches: 20, Mismatches: 1, Indels: 0 0.95 0.05 0.00 Matches are distributed among these distances: 21 20 1.00 ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40 Consensus pattern (21 bp): AATATATAAAAAATTTATATA Found at i:2220379 original size:3 final size:3 Alignment explanation
Indices: 2220371--2220406 Score: 63 Period size: 3 Copynumber: 12.0 Consensus size: 3 2220361 AAGCAATTTA * 2220371 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT TTT ATT 1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT 2220407 TTAAATTCAA Statistics Matches: 31, Mismatches: 2, Indels: 0 0.94 0.06 0.00 Matches are distributed among these distances: 3 31 1.00 ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69 Consensus pattern (3 bp): ATT Found at i:2221624 original size:4 final size:4 Alignment explanation
Indices: 2221615--2221639 Score: 50 Period size: 4 Copynumber: 6.2 Consensus size: 4 2221605 TGATGTCATG 2221615 ATAA ATAA ATAA ATAA ATAA ATAA A 1 ATAA ATAA ATAA ATAA ATAA ATAA A 2221640 AGCACTTGAC Statistics Matches: 21, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 21 1.00 ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24 Consensus pattern (4 bp): ATAA Found at i:2222751 original size:24 final size:24 Alignment explanation
Indices: 2222724--2222803 Score: 88 Period size: 24 Copynumber: 3.2 Consensus size: 24 2222714 TTTAAGCAGG * 2222724 TATAATTATATAACATTAATTTAA 1 TATAATTATATAACATTAATATAA * * ** 2222748 TATAAAAATAATAAAACATTAATACGA 1 TAT---AATTATATAACATTAATATAA 2222775 TATAATTATATAACATTAATATAA 1 TATAATTATATAACATTAATATAA 2222799 TATAA 1 TATAA 2222804 AAATAATAAA Statistics Matches: 44, Mismatches: 9, Indels: 6 0.75 0.15 0.10 Matches are distributed among these distances: 24 25 0.57 27 19 0.43 ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38 Consensus pattern (24 bp): TATAATTATATAACATTAATATAA Found at i:2222798 original size:19 final size:18 Alignment explanation
Indices: 2222774--2222821 Score: 55 Period size: 16 Copynumber: 2.7 Consensus size: 18 2222764 CATTAATACG * 2222774 ATATAATTATATAACATTA 1 ATATAATTATATAA-AATA 2222793 ATATAA-TATA-AAAATA 1 ATATAATTATATAAAATA * 2222809 ATAAAATTATATA 1 ATATAATTATATA 2222822 TGATATAAAA Statistics Matches: 25, Mismatches: 2, Indels: 5 0.78 0.06 0.16 Matches are distributed among these distances: 16 8 0.32 17 6 0.24 18 5 0.20 19 6 0.24 ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38 Consensus pattern (18 bp): ATATAATTATATAAAATA Found at i:2222827 original size:26 final size:25 Alignment explanation
Indices: 2222733--2222841 Score: 96 Period size: 26 Copynumber: 4.3 Consensus size: 25 2222723 GTATAATTAT * * * 2222733 ATAACATTAATTTAATATAAAAATA 1 ATAAAATTAATATGATATAAAAATA * ** 2222758 ATAAAACATTAATACGATATAATTAT- 1 AT-AAA-ATTAATATGATATAAAAATA * * 2222784 ATAACATTAATATAATATAAAAATA 1 ATAAAATTAATATGATATAAAAATA 2222809 ATAAAATTATATATGATATAAAAA-A 1 ATAAAATTA-ATATGATATAAAAATA 2222834 ATATAAAT 1 ATA-AAAT 2222842 ACAATATTAA Statistics Matches: 66, Mismatches: 13, Indels: 9 0.75 0.15 0.10 Matches are distributed among these distances: 24 15 0.23 25 16 0.24 26 21 0.32 27 14 0.21 ACGTcount: A:0.61, C:0.04, G:0.02, T:0.34 Consensus pattern (25 bp): ATAAAATTAATATGATATAAAAATA Found at i:2222840 original size:27 final size:27 Alignment explanation
Indices: 2222782--2222884 Score: 88 Period size: 27 Copynumber: 3.9 Consensus size: 27 2222772 CGATATAATT * * 2222782 ATATAACATTA-ATATAATATAAAAAT 1 ATATAAAATTATATATAATATAAAAAA * 2222808 A-ATAAAATTATATATGATATAAAAAA 1 ATATAAAATTATATATAATATAAAAAA ** * 2222834 ATATAAATACAATAT-TAATATATAAAA 1 ATATAAA-ATTATATATAATATAAAAAA * * 2222861 ATATTAAAATT-TCTATAAAATAAA 1 ATA-TAAAATTATATATAATATAAA 2222885 TTATTATCAT Statistics Matches: 60, Mismatches: 12, Indels: 9 0.74 0.15 0.11 Matches are distributed among these distances: 25 8 0.13 26 17 0.28 27 26 0.43 28 9 0.15 ACGTcount: A:0.62, C:0.03, G:0.01, T:0.34 Consensus pattern (27 bp): ATATAAAATTATATATAATATAAAAAA Found at i:2222848 original size:26 final size:26 Alignment explanation
Indices: 2222782--2222864 Score: 82 Period size: 26 Copynumber: 3.2 Consensus size: 26 2222772 CGATATAATT 2222782 ATATAACATT-AATATAATATAAAAATA 1 ATATAA-ATTAAATATAATATAAAAA-A * * 2222809 ATA-AAATTATATATGATATAAAAAA 1 ATATAAATTAAATATAATATAAAAAA * 2222834 ATATAAA-TACAATATTAATATATAAAA 1 ATATAAATTA-AATA-TAATATAAAAAA 2222861 ATAT 1 ATAT 2222865 TAAAATTTCT Statistics Matches: 47, Mismatches: 5, Indels: 8 0.78 0.08 0.13 Matches are distributed among these distances: 25 9 0.19 26 21 0.45 27 17 0.36 ACGTcount: A:0.63, C:0.02, G:0.01, T:0.34 Consensus pattern (26 bp): ATATAAATTAAATATAATATAAAAAA Found at i:2222913 original size:17 final size:17 Alignment explanation
Indices: 2222860--2222913 Score: 51 Period size: 17 Copynumber: 3.3 Consensus size: 17 2222850 AATATATAAA * 2222860 AATATTAAAATTTCTAT 1 AATATTAAAATTTATAT * 2222877 AA-AAT-AAA-TTATTAT 1 AATATTAAAATTTA-TAT * 2222892 CATATTAAAATTTATAT 1 AATATTAAAATTTATAT 2222909 AATAT 1 AATAT 2222914 ATAATAACTT Statistics Matches: 28, Mismatches: 5, Indels: 8 0.68 0.12 0.20 Matches are distributed among these distances: 14 2 0.07 15 7 0.25 16 4 0.14 17 12 0.43 18 3 0.11 ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44 Consensus pattern (17 bp): AATATTAAAATTTATAT Found at i:2223829 original size:10 final size:12 Alignment explanation
Indices: 2223801--2223845 Score: 58 Period size: 12 Copynumber: 3.8 Consensus size: 12 2223791 TTTTGACTTA * 2223801 ATTTATTATTTAT 1 ATTTATTA-TAAT 2223814 ATTTATTATAA- 1 ATTTATTATAAT 2223825 A-TTATTATAAT 1 ATTTATTATAAT 2223836 ATTTATTATA 1 ATTTATTATA 2223846 TTTATAATCA Statistics Matches: 29, Mismatches: 1, Indels: 5 0.83 0.03 0.14 Matches are distributed among these distances: 10 9 0.31 11 2 0.07 12 10 0.34 13 8 0.28 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (12 bp): ATTTATTATAAT Found at i:2223840 original size:22 final size:23 Alignment explanation
Indices: 2223803--2223845 Score: 70 Period size: 22 Copynumber: 1.9 Consensus size: 23 2223793 TTGACTTAAT * 2223803 TTATTATTTATATTTATTATAAA 1 TTATTATTAATATTTATTATAAA 2223826 TTATTA-TAATATTTATTATA 1 TTATTATTAATATTTATTATA 2223846 TTTATAATCA Statistics Matches: 19, Mismatches: 1, Indels: 1 0.90 0.05 0.05 Matches are distributed among these distances: 22 13 0.68 23 6 0.32 ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60 Consensus pattern (23 bp): TTATTATTAATATTTATTATAAA Found at i:2224258 original size:28 final size:29 Alignment explanation
Indices: 2224185--2224263 Score: 106 Period size: 33 Copynumber: 2.6 Consensus size: 29 2224175 GTCTAGCATT 2224185 TATTTTAATGGCTATAAACTACTCCCAGGA 1 TATTTTAATGGCTATAAACTACTCCCA-GA * 2224215 TATTTAATTGATGGCTATAAACTACTCCCA-A 1 TA-TT--TTAATGGCTATAAACTACTCCCAGA 2224246 TATTTTAATGGCTATAAA 1 TATTTTAATGGCTATAAA 2224264 ATTCACATAA Statistics Matches: 44, Mismatches: 2, Indels: 8 0.81 0.04 0.15 Matches are distributed among these distances: 28 13 0.30 30 4 0.09 31 5 0.11 33 22 0.50 ACGTcount: A:0.35, C:0.16, G:0.11, T:0.37 Consensus pattern (29 bp): TATTTTAATGGCTATAAACTACTCCCAGA Found at i:2227373 original size:12 final size:12 Alignment explanation
Indices: 2227356--2227383 Score: 56 Period size: 12 Copynumber: 2.3 Consensus size: 12 2227346 TTTTTATAAT 2227356 AATATTTGGTAA 1 AATATTTGGTAA 2227368 AATATTTGGTAA 1 AATATTTGGTAA 2227380 AATA 1 AATA 2227384 ATTTTGATAC Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 12 16 1.00 ACGTcount: A:0.46, C:0.00, G:0.14, T:0.39 Consensus pattern (12 bp): AATATTTGGTAA Found at i:2228987 original size:19 final size:20 Alignment explanation
Indices: 2228960--2228998 Score: 53 Period size: 20 Copynumber: 2.0 Consensus size: 20 2228950 ATAATTAAAT * 2228960 TTAAATAAA-AATATTTTTA 1 TTAAATAAATAATAATTTTA * 2228979 TTAATTAAATAATAATTTTA 1 TTAAATAAATAATAATTTTA 2228999 AATCAAATTT Statistics Matches: 17, Mismatches: 2, Indels: 1 0.85 0.10 0.05 Matches are distributed among these distances: 19 8 0.47 20 9 0.53 ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49 Consensus pattern (20 bp): TTAAATAAATAATAATTTTA Found at i:2230759 original size:13 final size:13 Alignment explanation
Indices: 2230741--2230766 Score: 52 Period size: 13 Copynumber: 2.0 Consensus size: 13 2230731 AAAAAAATTG 2230741 ATTTTTATTTTTT 1 ATTTTTATTTTTT 2230754 ATTTTTATTTTTT 1 ATTTTTATTTTTT 2230767 GGTCCCCTAC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 13 13 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (13 bp): ATTTTTATTTTTT Found at i:2235396 original size:5 final size:5 Alignment explanation
Indices: 2235370--2235410 Score: 57 Period size: 5 Copynumber: 8.2 Consensus size: 5 2235360 ATTCGAAAAT * 2235370 TTTAA TTTAA ATT-A TTTAAA TTTAA TTTAA TTTAA TTTAA T 1 TTTAA TTTAA TTTAA TTT-AA TTTAA TTTAA TTTAA TTTAA T 2235411 AAAAAAATAA Statistics Matches: 32, Mismatches: 2, Indels: 4 0.84 0.05 0.11 Matches are distributed among these distances: 4 3 0.09 5 25 0.78 6 4 0.12 ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59 Consensus pattern (5 bp): TTTAA Found at i:2235493 original size:16 final size:16 Alignment explanation
Indices: 2235472--2235502 Score: 53 Period size: 16 Copynumber: 1.9 Consensus size: 16 2235462 TAAATCAAAG 2235472 TGATTAAAATTTAAAT 1 TGATTAAAATTTAAAT * 2235488 TGATTAAATTTTAAA 1 TGATTAAAATTTAAA 2235503 ATTCGATAAT Statistics Matches: 14, Mismatches: 1, Indels: 0 0.93 0.07 0.00 Matches are distributed among these distances: 16 14 1.00 ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45 Consensus pattern (16 bp): TGATTAAAATTTAAAT Done.