genome.fa.s1560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1560
Parameters: 2 7 7 80 10 50 1000
Length:  50739

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2702--2761	20	3.0	20	71	20	54	36	0	3	60	1.14
3433--3520	46	1.9	46	88	0	131	44	12	3	39	1.59
5114--5335	42	5.5	39	72	18	143	39	27	13	19	1.89
5114--5341	123	1.9	123	92	0	384	39	27	13	19	1.89
6147--6213	21	3.2	21	72	16	59	37	0	2	59	1.13
6605--6656	2	26.0	2	100	0	104	50	0	0	50	1.00
7713--7758	2	23.0	2	100	0	92	50	0	0	50	1.00
9107--9154	21	2.3	22	82	13	66	41	0	2	56	1.11
9107--9156	20	2.5	21	87	9	70	42	0	2	56	1.11
10158--10379	42	5.4	41	72	18	162	19	15	27	36	1.93
10152--10379	123	1.9	123	89	1	359	19	15	27	37	1.92
11868--11906	21	1.9	21	84	5	53	25	7	0	66	1.18
13545--13582	18	2.2	18	86	13	53	31	2	2	63	1.22
14687--14749	11	5.2	12	74	12	58	60	0	1	38	1.07
14690--14790	26	4.0	25	73	19	68	54	0	3	40	1.26
14800--14855	30	2.0	27	86	10	76	58	5	1	33	1.31
16772--16860	46	1.9	46	81	4	108	42	14	3	39	1.62
18449--18670	42	5.5	39	72	18	143	38	27	13	19	1.90
18449--18676	123	1.9	123	92	0	384	39	27	14	19	1.90
23216--23261	22	2.0	24	87	12	69	43	0	2	54	1.12
23568--23611	16	2.7	16	82	10	54	38	0	2	59	1.10
26001--26185	42	4.5	39	73	18	146	37	28	14	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25964--26191	123	1.9	123	90	0	366	38	26	14	20	1.91
29890--29937	21	2.3	22	82	13	66	41	0	2	56	1.11
29890--29939	20	2.5	21	87	9	70	42	0	2	56	1.11
30942--31163	42	5.4	41	72	18	162	19	15	27	36	1.93
30936--31163	123	1.9	123	89	1	359	19	15	27	37	1.92
32652--32691	20	2.0	20	85	4	55	25	7	0	67	1.16
34328--34365	18	2.2	18	86	13	53	31	2	2	63	1.22
35472--35530	11	5.5	11	74	11	50	59	0	1	38	1.08
35473--35572	25	4.0	25	73	21	68	54	1	4	41	1.26
35582--35637	30	2.0	27	86	10	76	58	5	1	33	1.31
39229--39456	42	5.6	38	72	17	158	39	27	13	19	1.89
39229--39456	123	1.9	123	91	0	375	39	27	13	19	1.89
40271--40345	38	1.9	39	87	12	111	48	0	1	50	1.09
40283--40350	21	3.5	20	67	20	54	48	0	1	50	1.10
40378--40429	15	3.4	16	76	7	63	46	0	0	53	1.00
40756--40781	2	13.0	2	100	0	52	50	0	0	50	1.00
43606--43695	17	5.1	18	69	25	50	56	2	0	41	1.11
43577--43675	32	3.4	28	74	14	85	56	3	2	38	1.26
46537--46657	39	3.0	38	77	13	118	38	27	15	19	1.92
47750--47977	42	5.6	39	71	19	155	19	15	26	38	1.91
47750--47977	123	1.9	123	92	1	386	19	15	26	38	1.91
49701--49762	25	2.4	25	78	15	63	50	4	6	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49772--49826	29	2.0	27	82	13	67	54	5	5	34	1.46

Tables:   1

The End!