Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1563
Parameters: 2 7 7 80 10 50 1000
Length:  63362

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
560--589
3
10.0
3
100
0
60
66
0
33
0
0.92
1466--1504
17
2.3
17
86
8
53
53
2
0
43
1.14
10069--10150
39
2.1
39
97
0
155
37
18
7
36
1.79
10573--10616
16
2.9
15
86
6
54
65
0
0
34
0.93
11027--11055
15
1.9
15
100
0
58
41
0
10
48
1.37
11890--11940
21
2.5
21
83
3
59
58
0
0
41
0.98
12161--12250
44
2.0
44
100
0
180
33
17
13
35
1.89
13777--13822
24
1.9
24
86
0
65
45
2
36
15
1.58
14034--14111
26
3.0
25
78
14
86
41
5
1
52
1.32
14034--14131
25
3.8
25
74
17
76
41
4
1
53
1.27
16278--16366
26
3.4
26
82
4
99
48
15
6
29
1.71
18068--18127
19
3.0
20
76
9
61
41
15
13
30
1.85
18157--18209
20
2.7
20
88
5
72
30
16
15
37
1.90
32142--32206
4
16.5
4
80
15
57
80
15
1
3
0.92
32130--32211
13
6.4
13
75
2
58
81
12
3
2
0.91
32149--32211
9
7.3
9
75
7
51
82
12
1
3
0.86
32130--32211
38
2.1
39
84
6
105
81
12
3
2
0.91
33644--33755
28
4.0
28
82
2
143
33
29
16
20
1.95
33736--33927
34
5.8
33
80
5
190
19
32
13
34
1.90
33735--33924
66
2.8
68
78
10
203
20
32
13
33
1.91
33924--34408
49
9.8
49
82
6
505
24
25
17
32
1.97
33924--34408
101
4.9
101
86
2
592
24
25
17
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33924--34408
150
3.3
148
84
6
588
24
25
17
32
1.97
36921--37009
26
3.4
26
84
4
99
47
15
7
29
1.74
46733--46763
2
15.5
2
100
0
62
51
0
0
48
1.00
52087--52145
5
11.6
5
77
15
59
77
0
18
3
0.90
52093--52147
9
5.7
9
79
12
56
78
0
20
1
0.85
52093--52156
21
3.2
19
80
13
67
76
0
21
1
0.87
52653--52782
20
6.2
20
67
16
68
41
2
2
53
1.26
52617--52782
82
2.0
83
94
3
291
42
4
1
51
1.32
52773--52830
29
2.0
29
80
12
66
60
1
1
36
1.17
52971--53001
15
2.1
15
100
0
62
38
6
0
54
1.26
56461--56500
19
2.1
19
95
0
71
40
17
15
27
1.89
58105--58158
21
2.6
21
82
11
67
40
11
18
29
1.85
58214--58350
52
2.6
52
92
0
220
32
15
13
39
1.86

Tables:   1

The End!