genome.fa.s1565.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1565
Parameters: 2 7 7 80 10 50 1000
Length:  127326

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216--259	20	2.3	19	84	4	52	50	6	18	25	1.71
2689--2758	27	2.7	26	77	14	81	37	0	5	57	1.23
9628--9748	62	2.0	62	88	3	181	34	17	14	33	1.90
12388--12424	3	12.3	3	100	0	74	32	0	0	67	0.91
13500--13528	13	2.1	14	93	6	51	58	0	0	41	0.98
14354--14483	41	3.2	41	75	4	129	30	13	13	43	1.82
14878--14913	18	1.9	19	94	5	65	16	2	0	80	0.83
15946--15972	2	13.5	2	100	0	54	51	0	0	48	1.00
17009--17105	7	13.6	7	72	19	51	48	2	1	48	1.20
17061--17103	21	2.2	21	88	12	65	58	0	0	41	0.98
17203--17255	19	3.2	16	78	19	56	49	0	0	50	1.00
17220--17258	19	2.1	18	90	4	60	53	0	0	46	1.00
17546--17572	13	2.1	13	100	0	54	51	7	14	25	1.68
19683--19744	14	3.8	16	77	16	56	17	4	4	72	1.20
21968--22011	2	22.0	2	100	0	88	50	0	0	50	1.00
22576--22605	14	2.1	15	93	6	53	33	10	13	43	1.77
22993--23035	16	2.6	17	85	3	61	37	0	2	60	1.10
24822--24878	2	28.5	2	100	0	114	50	0	0	49	1.00
26524--26575	2	26.0	2	92	0	86	50	3	0	46	1.20
26517--26572	18	3.1	18	94	0	94	50	7	0	42	1.30
27077--27101	2	12.5	2	100	0	50	52	0	0	48	1.00
28221--28248	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28757--28837	42	1.9	42	89	0	126	58	0	1	40	1.06
28788--28831	12	3.8	12	78	6	54	56	0	0	43	0.99
28759--28851	42	2.2	42	84	5	118	60	0	1	38	1.04
34526--34595	24	2.8	25	85	6	90	44	24	8	22	1.81
34528--34652	27	4.8	25	77	9	90	46	24	6	22	1.75
34528--34653	24	4.9	24	73	12	74	46	24	6	23	1.75
36137--36191	21	2.6	21	91	2	92	20	23	12	43	1.86
39141--39210	24	2.8	25	85	6	90	44	24	8	22	1.81
39195--39265	27	2.6	27	80	6	72	46	19	7	26	1.75
39688--39721	1	34.0	1	100	0	68	0	0	0	100	0.00
43591--43807	109	2.0	109	90	0	344	41	19	8	30	1.82
45207--45235	2	14.5	2	100	0	58	51	0	0	48	1.00
45593--45620	3	9.3	3	100	0	56	0	0	32	67	0.91
47101--47188	27	3.3	27	82	6	108	45	1	3	50	1.26
47117--47199	27	3.1	25	74	19	71	39	1	4	54	1.30
51641--51709	27	2.6	27	85	0	93	26	7	18	47	1.74
52015--52227	103	2.1	103	99	0	419	41	12	12	34	1.80
54299--54324	12	2.2	12	100	0	52	15	34	26	23	1.94
54327--54377	12	3.9	12	78	16	57	43	5	11	39	1.66
54333--54389	27	2.1	27	90	0	87	40	5	19	35	1.74
59049--59074	12	2.2	12	100	0	52	15	34	26	23	1.94
59077--59127	12	3.9	12	78	16	57	43	5	11	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59083--59139	27	2.1	27	90	0	87	40	5	19	35	1.74
60811--60849	16	2.5	16	87	4	53	23	2	0	74	0.94
62333--62394	22	2.7	24	82	9	76	51	9	1	37	1.45
62829--62874	22	2.1	22	84	8	58	30	13	17	39	1.87
68759--68785	2	13.5	2	100	0	54	0	48	0	51	1.00
69959--69996	2	19.5	2	89	5	60	47	2	0	50	1.15
71626--71659	2	17.0	2	100	0	68	50	0	0	50	1.00
72153--72187	2	17.5	2	100	0	70	51	0	0	48	1.00
72887--72961	20	3.7	20	73	16	73	74	4	8	13	1.18
73700--73743	2	22.0	2	95	0	79	52	0	47	0	1.00
74038--74088	20	2.6	19	78	9	57	66	1	0	31	1.03
74256--74324	30	2.3	30	89	0	111	59	0	1	39	1.06
74310--74346	20	1.9	20	88	5	58	67	0	0	32	0.91
74990--75108	47	2.5	46	80	11	118	52	1	0	45	1.10
78083--78118	3	12.0	3	87	0	54	5	33	0	61	1.19
80251--80934	347	2.0	348	94	2	1210	35	16	8	39	1.80
83355--83424	31	2.3	31	87	5	97	47	24	10	18	1.79
88493--88708	108	2.0	109	89	0	335	40	19	8	30	1.82
90532--90559	3	9.3	3	100	0	56	0	0	32	67	0.91
92296--92338	22	2.0	22	86	9	61	51	0	0	48	1.00
92301--92346	23	2.0	22	84	12	58	54	0	0	45	0.99
92611--92636	9	2.9	9	100	0	52	0	7	0	92	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93938--94070	27	5.0	27	78	10	123	40	3	5	51	1.40
98492--98559	27	2.6	26	88	2	91	26	5	20	47	1.73
98866--99081	103	2.1	104	95	3	391	41	12	12	33	1.80
103384--103409	13	2.0	13	100	0	52	30	23	7	38	1.83
106831--106859	2	14.5	2	100	0	58	0	48	0	51	1.00
109683--109728	2	23.0	2	90	0	74	50	4	0	45	1.21
109676--109728	18	2.9	18	94	0	88	49	7	0	43	1.31
110948--111022	20	3.7	20	73	16	73	74	4	8	13	1.18
111761--111804	2	22.0	2	95	0	79	52	0	47	0	1.00
111982--112021	14	2.9	14	88	0	53	62	0	5	32	1.17
112098--112148	20	2.6	19	78	9	57	66	1	0	31	1.03
112314--112382	30	2.3	30	89	0	111	59	0	1	39	1.06
112368--112404	20	1.9	20	88	5	58	67	0	0	32	0.91
113050--113169	47	2.5	46	80	10	118	53	1	0	45	1.10
121050--121119	31	2.3	31	87	5	97	47	24	10	18	1.79
126183--126399	109	2.0	109	89	0	335	40	19	9	30	1.83

Tables:   1

The End!