Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1566
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 9581
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Found at i:1367 original size:472 final size:475
Alignment explanation
Indices: 1--9581 Score: 13984
Period size: 471 Copynumber: 20.3 Consensus size: 475
** * *
1 AAGAGACAAACTTTGGTTCTATC-AAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAATGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
*
65 TCAATGTCATGTATCC-TATGAAGGGAATG-GTTCTTAGCTCCCAAGCTCGAAAAGCATGGAGCC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
** * * * * *
128 TCTTAC-AAAAACGAAGCTTGTCATAATTACGGGATGAATTTTGATATTACGGAAAATAGCGTAA
131 TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTAAGGAAAATAG-GAAA
* * * *
192 AGAAAAGATTTCCATTCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAGAATGTGTTTA
195 AGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTTA
* * ** * *
257 TAGTGCCTAATCTCAAAAAGAATGAAGATCATTACTAGAATCCTTATTTGTCTTATTTGAGGCAC
260 TAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGCAC
* *
322 GAACTTAGACTCTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGAATC---AAT
324 GAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAAT
* * * *
384 CGTGTATCCTTACGAGAAGACAAAGTTTATGGTGCATAATCATGAAAA-AATGGGGATTAGCATG
389 CGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATG
448 ACAATTCTTGTTTGTCTT-TTT
454 ACAATTCTTGTTTGTCTTATTT
* *
469 AATAGACAAAC-TTACTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
* * * *
533 TCAATCTCATGTATCCTTATGAA-GGAACG-GTTCTTAGCTCCTAATCTC-AAAAGCATGGGGCC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
* * * *
595 TCTTATGAGAATCGATGCTTGTCATAATTATGGGATG-AATTTGGATATTAAGGAAAAAAGGTAA
131 TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTT-GATATTAAGGAAAATAGG-AA
* * *
659 AAGAAAAAGATTTCCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATCTGTT
194 AAG-AAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTT
** * *
724 TATAGTCCTAATCACAAAAAGAATGAAGATCGCGACTAGAATCCT-GTTTGTCTCATTTGAAGCA
258 TATAGTCCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGCA
*
788 CGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCTTTTCTTACGAAA-CAAAGCATCAATAA
323 CGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAA
*
852 TCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAA-AATGGGGATTAGCAT
388 TCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCAT
*
916 GACAATTCTTGTTCGTCTTATTT
453 GACAATTCTTGTTTGTCTTATTT
* * *
939 AAGAGACAAAC-TTAGTTCTATCAAAAATGGTGGAAAGAAAACATTTTCTTGCGACACCAATGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
1003 TCAATGTCATGTATCCTTATGAAGGG-ATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
* * * * *
1067 TCTTACGAGAATCGAAGCTTGTCATAATTACGGGATGAATTTTGATATGAAGGAAAATAGCATAA
131 TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTAAGGAAAATAGGA-AA
* * * *
1132 AGAAAAGATTTCCATGCGAAAGAAAATCGTGAATATCGGTTATCCTAATGAGGAGAATGTG-TTA
195 AGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTTA
* * * * **
1196 TAGTGCCTAA-CTCGAAAAGAATGAAGATCATTACTAGAATCCTCATTAT-TCTCGTTTGAGGCA
260 TAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTT-TGTCTCACTTGAGGCA
*
1259 CGAACTTAGACTCTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAA
323 CGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAA
* *
1324 TCGTGTATACTTATGAGAAGACAAAGTTTATGGTGCATAATCATGAAAAGAAT-GGGATTAGCAT
388 TCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCAT
*
1388 GACAATTCTTCTTTTGTCTTA-TT
453 GACAATTCTT-GTTTGTCTTATTT
*
1411 AATAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
* *
1476 TC-ATGTCAT-TATCCTTATGAAGGGAACGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGGGCC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
* * * *
1539 TCTTATGAGAATCGATGCTTGTCATAATTATGGGATG-AATTTAGATATTAAGGAAAAATGGGGA
131 TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTT-GATATTAAGG-AAAAT-AGGA
*
1603 AAAG-AAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATCTGTT
193 AAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTT
*
1667 TATAGTCCCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGCCTCACTTGAGGC
258 TATAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGC
1732 ACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
322 ACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
* * *
1797 ATCGTGTATACTTATGAGAAGAC-AAGTTTATGGTGCATAATCATGAAAAGAATGGGGATTAGCA
387 ATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCA
*
1861 TGACAATTCTTGTTTGTCTTAATT
452 TGACAATTCTTGTTTGTCTTATTT
* * * *
1885 AAGAGACACA-TTTACTTCTATAAAAAACGGTGGGAAGAAAA-ATTTTCTTGCAACACCAAAGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
* * * * * * *
1948 CCAACGTCAAGTATCCTTATGAAGGGAATGGCGTTTTTAACTCCCCATCTCG-AAAGCATGGAGC
66 TCAATGTCATGTATCCTTATGAAGGGAAT-GTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGC
* * * *
2012 CTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAGTTGGATATTAAGGAAAAAAGGGAA
130 CTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTAAGGAAAATAGGAAA
* * * *
2077 AGAAAAGATTTTCATGCAAAAGAAAATCGTG-A-ATCGTTTATCCTAATGAGGAGAATCTGTTTA
195 AGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTTA
*
2140 TAGTCCCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGCCTCACTTGAGGCAC
260 TAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGCAC
2205 GAACTTAGACTTTACAAAAA-TGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAAT
324 GAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAAT
*
2269 CGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGCATG
389 CGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATG
*
2334 ACAATTC--GTTTGTCTTGTTT
454 ACAATTCTTGTTTGTCTTATTT
2354 AAGAGAC-AACTTTACTTCTATCAAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGC
1 AAGAGACAAACTTTACTTCTATC-AAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGC
*
2418 ATCAATGTCATGTATCCTTATGAGGGGAATGTGTTTCTTAGCTCCCAATCTCGAAAAGCATGGAG
65 ATCAATGTCATGTATCCTTATGAAGGGAATGTG-TTCTTAGCTCCCAATCTCGAAAAGCATGGAG
*
2483 CCTCTTACGTGAATCGAAGCTTGTCATAA-T-TGGGATGAAATTTGATATTATA-GAAAATGGGG
129 CCTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAAT-AGG
2545 AAAAGAAAAGATTTCCATGCAAAAGAAAATCGCG-A-ATCGTTTATCCCT-ACGAGGAGAATGTG
192 AAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTAT-CCTAACGAGGAGAATGTG
* * * *
2607 TTTATAGTCCTAATCACAAAAAGAATGAAGATCGTGGCTAGAATCCTCTTTTGTCTCAGTTGAGG
256 TTTATAGTCCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGG
* *
2672 CCCAAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTTACGAAACC-AAGCATCAA
321 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTC-TTACGAAACCAAAGCATCAA
2736 TAATCGTGTA-TC-TATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAG
385 TAATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAG
*
2799 CATGACAATTCTTGTTTGTCTTGTTT
450 CATGACAATTCTTGTTTGTCTTATTT
2825 AAGAGACAAACTTTACTTCTATCACAAAACGGGTGGAAAGAAAACA-TTTCTTGCGACACCAAAG
1 AAGAGACAAACTTTACTTCTATCA-AAAAC-GGTGGAAAGAAAACATTTTCTTGCGACACCAAAG
*
2889 CATCAATGTCATGTATCCTTATGAGGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGG-G
64 CATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAG
* *
2953 CCTCTTACGTG-ATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTATAGAAAAATGGGG
129 CCTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAAT-AGG
*
3017 AAAATAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAAGAATGTG
192 AAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGG-AGAATGTG
*
3082 TTTATAGTCCTTAATCACAAAAAGAATGAAGATCATCGTACTAGAATCCTCGTTTGCCTCACTTG
256 TTTATAGTCC-TAATCACAAAAAGAATGAAGATCAT-G-ACTAGAATCCTCGTTTGTCTCACTTG
* *
3147 AGGCACGCACTTAAGACTTTACAAAAATTGGTGACAAGATAGCCTTTCTTACGAAACCAAAGCAT
318 AGGCACGAACTT-AGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCAT
3212 CAATAATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAG-ATAGGGAT
382 CAATAATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGAT
3276 TAGCATGACAATTCTTGTTTGTCTTGATTT
447 TAGCATGACAATTCTTGTTTGTCTT-ATTT
3306 AAGAGGACAAACTTTAGCTTCTATC-AAAACTGGTGGAAAGAAAACATTTTCTTGCGACA-CAAA
1 AAGA-GACAAACTTTA-CTTCTATCAAAAAC-GGTGGAAAGAAAACATTTTCTTGCGACACCAAA
3369 TGCATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGG
63 -GCATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGG
* *
3434 AGCCTCTTACGTAGAATCGAAGCTTGTCATAATTACGGGATG-AATTTGATATGAAGGAAAATAG
127 AGCCTCTTACGT-GAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTAAGGAAAATAG
* * * *
3498 GCTAAAGAAAAGATTTCCATGCGAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATGT
191 G-AAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATG-
* * * *
3563 TGTTTATAGTGCCTAATCTCAAAAAG-ATGAAGATCAGTG-CTAGAATCCTCATATGTCTCAGTT
254 TGTTTATAGT-CCTAATCACAAAAAGAATGAAGATCA-TGACTAGAATCCTCGTTTGTCTCA-CT
*
3626 TGAGGCACGAACTTAGACTCTACAAAAATTGGTGACAAGAAAGCC-TTCTTACG-AACCAAAGCA
316 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCA
3689 TCAATAATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGA
381 TCAATAATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGA
*
3754 TTAGCATGACAATTCTTGTTTGTCTTGTTT
446 TTAGCATGACAATTCTTGTTTGTCTTATTT
3784 AAG-GACAAAC-TTACTTCTATCAAAACAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAG
1 AAGAGACAAACTTTACTTCTATC-AAA-AACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAG
*
3847 CATCAATGTCATGTATCCTTATG-AGGGGATGTGTTTCTTAGCTCCCAATCTCGAAAAGCATGGA
64 CATCAATGTCATGTATCCTTATGAAGGGAATGTG-TTCTTAGCTCCCAATCTCGAAAAGCATGGA
*
3911 GCCTCTTACGTGAATCGAAGCTTGTCATAATTAT-GGATGAAATTTGATATTATA-GAAAATGGG
128 GCCTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAAT-AG
3974 GAAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTG
191 GAAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTG
* * * *
4039 TTTTATAGTCCTTAATCACAAAAAGAATGAAGATCGTGGCTAGAATCCTCCTTTGTCTCAGTTGA
256 -TTTATAGTCC-TAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGA
* *
4104 GGCCCAAACTTAGACTTTACAAAAATT-GTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
319 GGCACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCA
4168 ATAATCGTGTATTCTTATGAGAAGGACAAAGTTTATGGTGCCTTAATCATG-AAAGAATAGGGAT
384 ATAATCGTGTATTCTTATGAGAA-GACAAAGTTTATGGTGCC-TAATCATGAAAAGAATAGGGAT
*
4232 TAGCATGAACAATTCTTGTTTGTCTTGTTT
447 TAGCATG-ACAATTCTTGTTTGTCTTATTT
4262 AAGAGACAAACTTTACTTCTATC-AAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
* *
4326 TCAATGTCATGTATCCTTATGAGGGGATGTGTGTTCTTTAGCTCCCAATCTCGAAAAGCATGGAG
66 TCAATGTCATGTATCCTTATGAAGGGA-ATGTGTTC-TTAGCTCCCAATCTCGAAAAGCATGGAG
*
4391 CCTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTATA-GAAAATGGGG
129 CCTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAAT-AGG
*
4455 AAAATAAAAGATTTCCATGCAAAAG-AAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGT
192 AAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGT
*
4519 TTATAGTCCTTAATCAC-AAAAGAATGAAGATCATGACTAGAATCCTCGTTTGCCTCACTTGA-G
257 TTATAGTCC-TAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGG
*
4582 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAATCAAAGCATCAAT
321 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
*
4647 AATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATC-TGAAAAAAATA-GGATTAGC
386 AATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGC
4710 ATGACAATTCTTGTTTGTCTT-TTT
451 ATGACAATTCTTGTTTGTCTTATTT
* *
4734 AAGAGACAAACTTTACTTCTATTAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAACGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
*
4799 TCAATGTCATGTATCCTTATGAGGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
* *
4864 TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTATA-GAAAATGGGGAA
131 TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAATAGGAAA
4928 AGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCG-TTATCCTAACGAGGAGAATGTG-TTA
195 AGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTTA
* * * * * *
4991 TAGTCCTTAATCACAAAAAGAATGAATATCGTGGCTAGAATCCTCCTTTGTCTCAGTTGAGGCCC
260 TAGTCC-TAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGCAC
*
5056 AAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAAT
324 GAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAAT
5121 CGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATG
389 CGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATG
*
5186 ACAATTCTTGTTTGTCTTGTTT
454 ACAATTCTTGTTTGTCTTATTT
5208 AAGAG-C-AACTTTACTTCTATCAAAAACGGTGGAAAGAAAAACATTTTCTTGCGACACCAAAGC
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAG-AAAACATTTTCTTGCGACACCAAAGC
*
5271 ATCAATGTCATGTATCCTTATGAGGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGC-TGGAGC
65 ATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGC
* * *
5335 CTCTTACGTGAATCGACGCTTGTCATAATTATGGAATGAAATTTGATATTATA-GAAAATGGGGA
130 CTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAAT-AGGA
5399 AAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTT
193 AAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTT
* * * *
5464 TATAGTCCTTAATCACAAAAAAGAATGAAGATCGTGGCTAGAATCCTCCTTTGTCTCAGTTGAGG
258 TATAGTCC-TAATCAC-AAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGG
* *
5529 CCCAAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
321 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
*
5594 AATCGTGTATTCTTATGAGAAGAC-AAGTTTATGGTGCTTAATCATGAAAAGAATA-GGATTAGC
386 AATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGC
*
5657 ATGAC-ATTCTTGTTTGTCTTGTTT
451 ATGACAATTCTTGTTTGTCTTATTT
5681 AAGAGAC-AACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
*
5745 TCAATGTCATGTATCCTTATGAGGGGAATG-GTTCTTAGCTCCCAATCTCGAAAAGCA-GGAGCC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
**
5808 TCTTACGTGAAATCGAAGCTTGTCATAATTAT-GGATGAAATTTGATATTATA-GAAAAT-GGGG
131 TCTTACGTG-AATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAATAGGAA
* *
5870 AATAAAAGATTTCCATGC--AAG-AAATCGCGAATATCGTTTATCCTAACGAGGAGAATCTGTTT
194 AAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTT
* * * *
5932 ATAGTCCTTAATCACAAAAAGAATGAAGATCGTGGCTAGAATCCTCTTTTTGTCTCAGTTGAGGC
259 ATAGTCC-TAATCACAAAAAGAATGAAGATCATGACTAGAATCCTC-GTTTGTCTCACTTGAGGC
* *
5997 CCAAACTTAGACTTTAC-AAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
322 ACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
6061 ATCGTGTATTCTTATGAGAAGAC-AAGTTTATGGTGCCTAATCATGAAAAAGAATAGGGATTAGC
387 ATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATG-AAAAGAATAGGGATTAGC
*
6125 ATGACAATTCTTGTTTGTCTTGTTTT
451 ATGACAATTCTTGTTTGTCTT-ATTT
6151 AAGAGACAAACTTTACTTCTAATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACC-AAGC
1 AAGAGACAAACTTTACTTCT-ATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGC
*
6215 ATCAATGTCCATGTATCCTTATGAGGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAG
65 ATCAATGT-CATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAG
*
6280 CCTCTTACGTGGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTATA-GAAAATGGG
129 CCTCTTACGT-GAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAAT-AG
*
6344 GAAAA-TAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGA-AATGTG
191 GAAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTG
* *
6407 TTTATAGT-CTAATC-CACAAA-AA-GAAGATCAATGACTAGAATCCTCGTTTGCCTCACTTGAG
256 TTTATAGTCCTAATCACAAAAAGAATGAAGATC-ATGACTAGAATCCTCGTTTGTCTCACTTGAG
6468 GCACGAACTTAGACTTTAC-AAAATTGGTGACAAGAAAAGCC-TTCTTACGAAACCAAAGCATCA
320 GCACGAACTTAGACTTTACAAAAATTGGTGACAAG-AAAGCCTTTCTTACGAAACCAAAGCATCA
*
6531 ATAATC--G--TTCTTATGAGAAGACAAAG-TTATGGTGCCTAATCATG-AAAGAATGGGGATTA
384 ATAATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTA
*
6590 GCATGACAA-TCTTGTTCGTCTTATTT
449 GCATGACAATTCTTGTTTGTCTTATTT
** * *
6616 AAGAGACAAACTTTGGTTCTATCAAAAATGGTGGAAAGAAAAAACA-TTTCTTGCGACACCAATG
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAG--AAAACATTTTCTTGCGACACCAAAG
6680 CATCAATGTCATGTAT-C-TATGAAGGGAATGTGTTCTTAGCTCCCAATCTCG-AAAGCATGGAG
64 CATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAG
** * * * *
6742 CCTCTTACAAGAAACGAAGC-TGTCATAATTACGGGGATGAATTTTGATATTACGGAAAATAGCG
129 CCTCTTACGTGAATCGAAGCTTGTCATAATTA-TGGGATGAAATTTGATATTAAGGAAAATAG-G
* * * * *
6806 TAAAGAAAAGATTTCCATTCAAAAGAAAATCGTGAATATCATTTATCCTAATGAGGAG-ATGTGT
192 AAAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGT
* ** *
6870 TTATAGTGCCTAATCTCAAAAAG-ATGAA-ATCAT-ACTAGAATCCTTATTTGTCTTA-TTGAGG
257 TTATAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGG
* *
6931 CACGAACTTAGACTCTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAAAACCAAAGAATCA
321 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACG--AAACCAAAGCATCA
* * * * *
6996 AT-ATCGTGTATCCTTACGAGAAGACAAAGTTTATGGTGCATAATCAGGAAAAGAATGGGGATTA
384 ATAATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTA
7060 GCATGACAATTCTTGTTTGTCTTATTT
449 GCATGACAATTCTTGTTTGTCTTATTT
* *
7087 AATAGACAAACTTTTACTTCTATC-AAAATGGTGGAAAGAAAACATTTTCTTGCGACACC-AAGC
1 AAGAGACAAAC-TTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGC
* * * *
7150 ATCAATCTCA-GTATCCTTATGAAGGGAACGTGTTCTTAGCTCCTAATCTCAAAAAGCATGG-GC
65 ATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGC
* * * * * *
7213 CCCTTATGAGAATCGATGCTTGTCATAATTATGGGATG-AATTTGGATATTAAGGAAAAAAGTAA
130 CTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTT-GATATTAAGGAAAATAGGAA
* * *
7277 AAGAAAAGATTTCCATGC--AA-AAAATCGTGAATA-CGTTTATCC-AATGAGGA-AATCTGTTT
194 AAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTT
** * * *
7336 ATAGTCCCTAATCACAAAAA-AATGAAGATCGCGACTAG-ATCCTTGTTTGTCTCATTTGAAGCA
259 ATAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGCA
*
7399 CGAACTTAG--TTTACAAAAATTGGTGACAAAAAAG-CTTTCTTACGAAA-CAAAGCATC-A-AA
323 CGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAA
* *
7458 TCGTGTATTCGTATGAGAAGACAAAGTTTATGGTGGCCTAATCATG-AAAGAATGGGGATTAGCA
388 TCGTGTATTCTTATGAGAAGACAAAGTTTATGGT-GCCTAATCATGAAAAGAATAGGGATTAGCA
*
7522 TGACAATTC-TGTTTCT-TCTATTT
452 TGACAATTCTTGTTTGTCT-TATTT
* * *
7545 AAGAGACAAACTTTAGTTCTATCAAAAATGGTGGAAAG-AAACATTTTCTTGCGACACCAATGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
7609 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
* * * * * * *
7674 TATTTCGAGAATCGAAGCTTGTCATAATTACGGGATGAATTTTGATATGAAGGAAAATAGCATAA
131 TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTAAGGAAAATAGGA-AA
* * *
7739 AGAAAAGATTTCCATGCGAAAGAAAAATCG-GAATATCGGTTATCCTAATGAGGAGAATGTGTTT
195 AGAAAAGATTTCCATGCAAAAG-AAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTT
* * * * **
7803 ATAGTGCCTAATCTC-GAAAGAATGAAGATCATTACTAGAATCCTCATTAT-TCTCGTTTGAGGC
259 ATAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTT-TGTCTCACTTGAGGC
*
7866 AC-AACTTAGACTCTACAAAAATTGGTGACAAG-AAGCCTTTCTTACGAAACCAAAGCATC-ATA
322 ACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
* * *
7928 ATCGTGTATACCTTATGAGAAGACAAAGTTTTAT-GTGCATAATCATGAAAAGAATGGGGA-TAG
387 ATCGTGTAT-TCTTATGAGAAGACAAAG-TTTATGGTGCCTAATCATGAAAAGAATAGGGATTAG
*
7991 CATGAACAATTCTTCTTTGTCTTATTT
450 CATG-ACAATTCTTGTTTGTCTTATTT
*
8018 AATAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACA-TTTCTTGCGACACCAAAGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
* *
8082 TCAATGTCATGTATCCTTATGAAGGGAACGTGTTTCTTAGCTCCCAATCTCGAAAAG-ATGGGGC
66 TCAATGTCATGTATCCTTATGAAGGGAATGTG-TTCTTAGCTCCCAATCTCGAAAAGCATGGAGC
* * * * * *
8146 ATCTTATGAGAATCGATGCTTGTCATAATTAGGGGATG-AATTTAGATATTAAGGAAAATGGGGA
130 CTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTT-GATATTAAGGAAAAT-AGGA
*
8210 AAAGAAAAGATTTCCATGCAAAAG-AAATCGCGAATATCG-TTATCCTAACGAGGAGAATCTGTT
193 AAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTT
*
8273 TATAGTCCCTAATCACAAAAAGAATGAAGAT-ATGACTAGAATCCTCGTTT-CCTCACTTGAGGC
258 TATAGT-CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGC
* *
8336 CCGAACTTAGACTTTACAAAAATGGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
322 ACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATA
* *
8401 ATCGTGTATAC-TATGAGAAGACAAAG-TTATGGTGCCATAATCATGAAAAGAATGGGGATTAGC
387 ATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCC-TAATCATGAAAAGAATAGGGATTAGC
*
8464 ATGACAATTCTTGTTTGTCTTA-AT
451 ATGACAATTCTTGTTTGTCTTATTT
* * * *
8488 AAGA-ACACACTTTACTTCTATAAAAAACGGTGGGAAG-AAACATTTTCTTGCAACAACC-AAGC
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGAC-ACCAAAGC
* * * * * *
8550 AACCAACGTCAAGTATCCTTA-GAAGGGAATGCGTTTTTAACTCCCAATCTCGAAAAGCATGGAG
65 -ATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAG
8614 CCTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATG-AATTTGGATATTAAGGAAAA-AGGA
129 CCTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTT-GATATTAAGGAAAATAGGA
* * * *
8677 AAAGAAAAGATTTTCATGCAAAAGAAAATCGTGAATATCGTTTATCCTAATGAGGAGAATCTGTT
193 AAAGAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTT
*
8742 TATAGTCCCCTAATCACAAAAAGAA-GAAGATCATGACTAGAATCCTCG-TTGCCTCACTTGAGG
258 TATAGT--CCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGG
8805 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTC-TACGAAACCAAAGCATCAAT
321 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
*
8869 AATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCTTG-AAAGAATAGGGATTAGC
386 AATCGTGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGC
*
8933 ATGACAATTCTTGTTTGTCTTGTTTT
451 ATGACAATTCTTGTTTGTCTT-ATTT
8959 AAGAGAC-AACTTTACTTCTATCAAAAACGGTGGAAAG-AAACATTTTCTTGCGACACC-AAGCA
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
9021 TCAAT-TCA-GTATCCTTA-G-AGGGAAATGTGTTCTTAGCTCCCAATCTCGAAAAGCA-GGAGC
66 TCAATGTCATGTATCCTTATGAAGGG-AATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGC
* *
9081 CTCTTACGTGAATTGAAGCTTGTCATAATTATGGGATGAAATTTGATATTATA-GAAAATGGGGA
130 CTCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTA-AGGAAAAT-AGGA
9145 AAAGAAAAGATTTCCATGCAAAAG-AAATCGCGATATATCGTTTATCCTAACGAGGAGAATGTGT
193 AAAGAAAAGATTTCCATGCAAAAGAAAATCGCGA-ATATCGTTTATCCTAACGAGGAGAATGTGT
* * * *
9209 TTATAGTCCTTAATCACAAAAAGAATGAAGATCGTGGCTA-AATCCTCCTTTGTCTCAGTTGAGG
257 TTATAGTCC-TAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGG
* *
9273 CCCAAACTTAGAC-TTAC-AAAATTGGTGACAAGAAAGCCTTTCTTACG-AACCAAAGCATCAAT
321 CACGAACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAAT
*
9335 AATCGTGTATTCTTATGAGAAGACAAAGTTTAT-GTGGCTTAATCATGAAAAGAATAGGGATTAG
386 AATCGTGTATTCTTATGAGAAGACAAAGTTTATGGT-GCCTAATCATGAAAAGAATAGGGATTAG
*
9399 CATGACAATTCTTGTTTGTCTTGTTT
450 CATGACAATTCTTGTTTGTCTTATTT
9425 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAGAGC
1 AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAA-AGC
*
9490 AATCAA-GTCATGTATCCTTATGAGGGGAATGTG-T-TTAGCT-CCAATCTCGAAAAGCATGGAG
65 -ATCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAG
*
9551 CCTCTTAAGTGAATCGAAGCTTGTCATAATT
129 CCTCTTACGTGAATCGAAGCTTGTCATAATT
Statistics
Matches: 8402, Mismatches: 457, Indels: 505
0.90 0.05 0.05
Matches are distributed among these distances:
457 32 0.00
458 47 0.01
459 108 0.01
460 79 0.01
461 63 0.01
462 108 0.01
463 86 0.01
464 95 0.01
465 108 0.01
466 360 0.04
467 439 0.05
468 389 0.05
469 639 0.08
470 729 0.09
471 1130 0.13
472 877 0.10
473 855 0.10
474 461 0.05
475 297 0.04
476 390 0.05
477 210 0.02
478 189 0.02
479 235 0.03
480 147 0.02
481 84 0.01
482 105 0.01
483 100 0.01
484 14 0.00
485 26 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (475 bp):
AAGAGACAAACTTTACTTCTATCAAAAACGGTGGAAAGAAAACATTTTCTTGCGACACCAAAGCA
TCAATGTCATGTATCCTTATGAAGGGAATGTGTTCTTAGCTCCCAATCTCGAAAAGCATGGAGCC
TCTTACGTGAATCGAAGCTTGTCATAATTATGGGATGAAATTTGATATTAAGGAAAATAGGAAAA
GAAAAGATTTCCATGCAAAAGAAAATCGCGAATATCGTTTATCCTAACGAGGAGAATGTGTTTAT
AGTCCTAATCACAAAAAGAATGAAGATCATGACTAGAATCCTCGTTTGTCTCACTTGAGGCACGA
ACTTAGACTTTACAAAAATTGGTGACAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATAATCG
TGTATTCTTATGAGAAGACAAAGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAGCATGAC
AATTCTTGTTTGTCTTATTT
Done.