Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1568

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8597
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Found at i:3376 original size:18 final size:19

Alignment explanation


    Indices: 3342--3381  Score: 64
    Period size: 19  Copynumber: 2.2  Consensus size: 19

       3332 TATAATTAAA

                               
       3342 TTTAAATAAAATATATTAT
          1 TTTAAATAAAATATATTAT

                 *             
       3361 TTTAATTAAAAT-TATTAT
          1 TTTAAATAAAATATATTAT

               
       3379 TTT
          1 TTT

       3382 GGGTCAGATC


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  18    9  0.45
  19   11  0.55

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (19 bp):   
TTTAAATAAAATATATTAT
Done.