genome.fa.s1569.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1569
Parameters: 2 7 7 80 10 50 1000
Length:  75253

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965--1031	33	2.0	33	88	0	98	34	11	13	40	1.81
985--1009	13	1.9	13	100	0	50	36	16	16	32	1.90
4387--4429	21	2.0	21	100	0	86	27	23	20	27	1.99
8086--8129	7	6.1	7	85	15	63	86	13	0	0	0.57
8082--8129	22	2.1	23	92	3	80	85	14	0	0	0.60
8082--8131	16	3.2	16	91	2	75	86	14	0	0	0.58
8370--8401	16	2.0	16	93	0	55	84	9	6	0	0.78
9331--9473	31	4.6	30	89	6	189	25	28	18	27	1.98
9331--9494	62	2.6	62	85	6	217	25	29	16	29	1.97
9328--9815	93	5.0	93	78	13	317	21	32	13	31	1.93
9486--10458	71	14.6	68	79	13	942	20	35	12	31	1.90
9762--9814	27	2.0	26	92	3	88	24	37	16	20	1.93
9455--10445	34	29.9	33	80	13	971	20	35	13	31	1.91
10001--10053	27	2.0	26	92	3	88	24	37	16	20	1.93
9855--10437	33	18.0	29	79	14	280	20	36	13	30	1.91
10156--10458	60	4.8	60	81	12	349	19	37	12	29	1.89
10451--11156	49	14.7	49	85	5	946	25	25	18	30	1.98
10974--11165	95	2.0	93	90	4	296	24	26	17	31	1.97
11066--11204	52	2.6	52	82	4	161	25	25	15	33	1.95
12021--12087	33	2.0	33	88	0	98	34	11	13	40	1.81
12041--12065	13	1.9	13	100	0	50	36	16	16	32	1.90
12107--12131	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12041--12184	66	2.2	63	80	9	148	31	16	15	36	1.90
12141--12262	51	2.4	51	90	5	185	35	19	17	27	1.94
16222--16247	13	2.0	13	100	0	52	38	15	15	30	1.88
16200--16267	33	2.1	32	91	8	111	32	16	16	35	1.91
16336--16360	13	1.9	13	100	0	50	36	16	16	32	1.90
19661--19699	21	1.9	20	94	5	69	35	15	12	35	1.86
19840--19867	13	2.2	13	100	0	56	28	14	17	39	1.89
19820--19885	33	2.0	33	85	5	89	30	13	13	42	1.83
20784--20829	21	2.2	20	82	14	58	21	15	19	43	1.87
27179--27425	97	2.5	97	88	1	361	29	12	29	27	1.94
30560--30600	12	3.2	12	86	10	55	0	2	14	82	0.76
33768--33879	51	2.2	52	82	4	129	34	13	22	29	1.92
33813--34007	79	2.5	79	86	2	275	32	13	25	28	1.94
33980--34034	27	2.0	27	96	0	101	32	14	16	36	1.89
33901--34113	106	2.0	106	89	0	327	33	14	22	29	1.93
33822--34192	185	2.0	185	91	2	602	33	14	23	28	1.94
34034--34092	28	2.0	30	90	9	95	30	16	27	25	1.97
34007--34424	79	5.3	79	92	0	692	32	14	25	27	1.94
35627--35762	35	3.9	34	94	1	236	19	29	5	45	1.73
35627--35762	69	2.0	69	94	2	238	19	29	5	45	1.73
35768--35796	12	2.3	13	94	5	51	27	0	3	68	1.05
36465--36697	61	3.8	61	83	9	289	27	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36645--36821	94	1.9	93	86	5	250	24	18	29	27	1.98
36738--37051	61	5.4	59	80	12	312	25	20	27	26	1.99
36738--37052	122	2.7	114	82	10	356	26	20	27	26	1.99
36976--37156	100	1.8	99	84	7	249	28	18	28	25	1.98
37134--37318	54	3.4	54	96	0	334	21	22	27	28	1.99
37358--37467	55	2.0	54	91	1	175	22	22	28	26	1.99
37185--37758	149	3.8	149	87	5	708	24	21	28	26	1.99
37387--37562	94	1.9	95	89	3	275	23	21	30	25	1.99
37481--38375	55	16.0	54	86	4	1124	23	21	28	27	1.99
37521--37604	29	3.0	29	65	15	68	17	20	28	33	1.95
37759--37844	28	3.1	28	61	6	66	26	19	26	26	1.99
37481--38375	227	4.0	221	86	6	1248	23	21	28	27	1.99
44027--44184	79	2.0	79	90	2	246	31	15	26	26	1.95
44730--44794	20	3.2	20	91	2	94	30	18	12	38	1.88
48116--48150	19	1.9	17	88	11	52	60	0	0	40	0.97
48666--48698	6	5.5	6	100	0	66	15	15	0	69	1.19
50124--50257	67	2.0	67	92	0	223	40	14	8	36	1.76
50887--50939	20	2.6	21	84	3	72	39	15	16	28	1.89
50971--51038	33	2.1	32	86	2	91	35	16	14	33	1.89
57647--57697	20	2.4	21	87	9	68	19	50	25	3	1.64
59661--59685	13	1.9	13	100	0	50	32	16	16	36	1.90
59777--59801	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59757--59824	33	2.1	33	88	2	102	35	17	14	32	1.91
64122--64200	32	2.5	32	87	0	113	41	12	25	20	1.87
64138--64213	32	2.4	32	86	0	98	44	14	17	23	1.85
64253--64340	32	2.7	34	77	10	103	43	10	18	28	1.82
64317--64381	33	2.0	33	84	6	87	55	12	12	20	1.68

Tables:   1

The End!