Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold157
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 491920
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.25
Warning! 108800 characters in sequence are not A, C, G, or T
File 3 of 3
Found at i:369761 original size:21 final size:21
Alignment explanation
Indices: 369728--369800 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
369718 GTTGGGACCC
369728 TGTATCG-TACATTCCACAAA
1 TGTATCGATACATTCCACAAA
*
369748 TGTATCGATACATTCCATAAA
1 TGTATCGATACATTCCACAAA
*
369769 TGTATC-ATAC-TTCTAC-AA
1 TGTATCGATACATTCCACAAA
369787 TGTATCGATACATT
1 TGTATCGATACATT
369801 TGGATAAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.17
19 8 0.17
20 13 0.28
21 18 0.38
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTCCACAAA
Found at i:370451 original size:42 final size:42
Alignment explanation
Indices: 370393--370511 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
370383 TTCTTCTCTC
* * * *
370393 CTCCTCCTGTCGTCCCTCCTCTCTTTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
370435 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
370477 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
370512 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:370452 original size:12 final size:11
Alignment explanation
Indices: 370426--370501 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
370416 TTTATTATCT
*
370426 CTCCTGTCTCTC
1 CTCCTATCTC-C
370438 CTCCTATCATCC
1 CTCCTATC-TCC
370450 CTCCTATCT--
1 CTCCTATCTCC
*
370459 CTACTATCT--
1 CTCCTATCTCC
*
370468 CTCCTGTCTCTC
1 CTCCTATCTC-C
370480 CTCCTATCATCC
1 CTCCTATC-TCC
*
370492 CTCCTCTCTC
1 CTCCTATCTC
370502 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:375973 original size:52 final size:51
Alignment explanation
Indices: 375903--376072 Score: 196
Period size: 52 Copynumber: 3.3 Consensus size: 51
375893 GAAATAACGA
* *
375903 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGGAAATAAAATCGG
* * * * * * *
375955 TGTTGGAGCATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTGGTATTTTGGAAATAAAATCGG
* *** *
376007 GGTTGGAGTATCCCCGATTATTAAAAATCAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAATCGG
376058 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
376073 TCGGAAATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
51 37 0.39
52 49 0.51
53 10 0.10
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGGAAATAAAATCGG
Found at i:376090 original size:28 final size:28
Alignment explanation
Indices: 376055--376153 Score: 144
Period size: 28 Copynumber: 3.5 Consensus size: 28
376045 GAAATAAAGT
376055 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCTCGGAAATAA
* *
376083 CGGGGTTGGAGTATTCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCTCGGAAATAA
***
376111 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCTCGGAAATAA
*
376139 CGAGGTTGGAGTATC
1 CGGGGTTGGAGTATC
376154 TTCGATTGTG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.24, C:0.18, G:0.34, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAA
Found at i:376205 original size:52 final size:51
Alignment explanation
Indices: 376143--376479 Score: 184
Period size: 52 Copynumber: 6.4 Consensus size: 51
376133 AAATAACGAG
** * * *
376143 GTTGGAGTATCTTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGG-AGTTTTGAAAATAAAACCGGA
** * * *
376195 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGAGTTTTGAAAATAAAACCGGA
* * * ** *
376247 GTTGGAGTATCCCCGATTGTGAAAAAATTAGTGCTTT-AGCGATAAAACCGGG
1 GTTGGAGTATCCCCGATTGTG-AAAAATTGGAGTTTTGA-AAATAAAACCGGA
* ** ** * *
376299 GTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGGAGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGAGT-T--TTGAAAATAAAACCGGA
* * *
376354 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTGGAG--TTTTGAAAATAAAACCGGA
* * * * *
376408 GTTAGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGAGTTTTGAAAATAAAACCGGA
*
376459 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
376480 GAGAATTGAG
Statistics
Matches: 220, Mismatches: 42, Indels: 46
0.71 0.14 0.15
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 2 0.01
51 37 0.17
52 89 0.40
53 25 0.11
54 27 0.12
55 20 0.09
56 2 0.01
57 5 0.02
58 6 0.03
59 1 0.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGAGTTTTGAAAATAAAACCGGA
Found at i:376257 original size:104 final size:103
Alignment explanation
Indices: 376137--376479 Score: 293
Period size: 104 Copynumber: 3.3 Consensus size: 103
376127 CCGATGAAAT
* **
376137 AACGAGGTTGGAGTATCTTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
*
376202 TATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAA
66 TATCCCCGATTAAAGGAAAATTGGAGTTTTGAAAATAA
* ** * * *
376240 AACCGGGGTTGGAGTATCCCCGATTGTGAAAAAATTAGTGCTTTAGCG--ATAAAACCGGGGTTG
1 AA-CGGGGTTGGAGTATCCCCGATTGTG-AAAAATTGGTATTTTTG-GAAATAAAATCGGAGTTG
* * ** ** ** *
376303 GAGTATCCCCTCGGAAATAACGG--GGTTGGAGTATCCCCGATGAT-T
63 GAGTAT-CCC-C-G-ATTAAAGGAAAATTGGAGT-T--TTGAAAATAA
* *
376348 AACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAG
1 AACGGGGTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTGG
* * *
376413 AGTATCCCCGATTATA-GAAAATTAGTGTTTTGAAAATAA
64 AGTATCCCCGATTAAAGGAAAATTGGAGTTTTGAAAATAA
* *
376452 AATCGGAGTTGGAATATCCCCGATTGTG
1 AA-CGGGGTTGGAGTATCCCCGATTGTG
376480 GAGAATTGAG
Statistics
Matches: 182, Mismatches: 40, Indels: 34
0.71 0.16 0.13
Matches are distributed among these distances:
103 6 0.03
104 44 0.24
105 43 0.24
106 16 0.09
107 36 0.20
108 15 0.08
109 22 0.12
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (103 bp):
AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAG
TATCCCCGATTAAAGGAAAATTGGAGTTTTGAAAATAA
Found at i:376258 original size:239 final size:240
Alignment explanation
Indices: 375839--376370 Score: 856
Period size: 239 Copynumber: 2.2 Consensus size: 240
375829 TTTTGGAGAT
* *
375839 AATAACGGGGTTGGAGTGTTCCCTCGGAAGTAATGGGGTTGGAGTATCCCCGATGAAATAACGAG
1 AATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
*
375904 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGTGTTGGAGCATCCC
66 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGCATCCC
* *
375969 CGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTAT-TAAAA
131 CGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAA
* * **
376033 ATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCTCGGA
196 ATCAATACTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGA
376078 AATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
1 AATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
* *
376143 GTTGGAGTATCTTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCC
66 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGCATCCC
*
376208 CGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGAAAAA
131 CGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAA
* * * **
376273 ATTAGTGCTTTAGCGATAAAACCGGGGTTGGAGTATCCCCTCGGA
196 ATCAATACTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGA
*
376318 AATAACGGGGTTGGAGTA-TCCC-C-GATGATTAACGGGGTTGGAGTATCCCCGAT
1 AATAACGGGGTTGGAGTATTCCCTCGGA--AGTAACGGGGTTGGAGTATCCCCGAT
376371 TGTGAAGAAA
Statistics
Matches: 272, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
237 2 0.01
238 1 0.00
239 211 0.78
240 58 0.21
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.27
Consensus pattern (240 bp):
AATAACGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAG
GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGCATCCC
CGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTATGAAAAA
ATCAATACTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGGA
Found at i:376358 original size:27 final size:28
Alignment explanation
Indices: 376295--376370 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
376285 GCGATAAAAC
***
376295 CGGGGTTGGAGTATCCCCTCGGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
376323 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
376350 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
376371 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:376450 original size:212 final size:212
Alignment explanation
Indices: 376083--376479 Score: 636
Period size: 212 Copynumber: 1.9 Consensus size: 212
376073 TCGGAAATAA
* *
376083 CGGGGTTGGAGTATTCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
** *
376148 AGTATCTTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATT
66 AGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATT
* * *
376213 AAAGGAAAATTGGCGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTGTGAAAAAATTAG
131 AAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGAAAAAATTAG
376278 TGCTTTAGCGATAAAAC
196 TGCTTTAGCGATAAAAC
* *
376295 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACGGGGTTGG
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
*
376359 AGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGA
66 AGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGA
* * *
376424 TTATA-GAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTG
129 TTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTG
376480 GAGAATTGAG
Statistics
Matches: 169, Mismatches: 14, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
211 28 0.17
212 102 0.60
213 39 0.23
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (212 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGG
AGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATCCCCGATT
AAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGAAAAAATTAG
TGCTTTAGCGATAAAAC
Found at i:376454 original size:51 final size:53
Alignment explanation
Indices: 376358--376476 Score: 154
Period size: 51 Copynumber: 2.3 Consensus size: 53
376348 AACGGGGTTG
* * *
376358 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
376412 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
*
376463 GAATATCCCCGATT
1 GAGTATCCCCGATT
376477 GTGGAGAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
51 34 0.58
52 2 0.03
53 8 0.14
54 15 0.25
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.32
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:378868 original size:13 final size:13
Alignment explanation
Indices: 378850--378875 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
378840 ACAAAGATCC
378850 ATGTATCGATACA
1 ATGTATCGATACA
378863 ATGTATCGATACA
1 ATGTATCGATACA
378876 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:378871 original size:33 final size:33
Alignment explanation
Indices: 378829--378895 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
378819 AAAATTTCCA
***
378829 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
378862 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
378895 A
1 A
378896 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:378939 original size:19 final size:18
Alignment explanation
Indices: 378915--378982 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
378905 CAGTAGCTAA
378915 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
378934 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
378949 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
378966 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
378983 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:378955 original size:13 final size:13
Alignment explanation
Indices: 378937--378961 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
378927 ACAATACTTA
378937 TGTATCGATACAT
1 TGTATCGATACAT
378950 TGTATCGATACA
1 TGTATCGATACA
378962 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:378959 original size:32 final size:32
Alignment explanation
Indices: 378918--378980 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
378908 TAGCTAATTA
*
378918 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
378950 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
378981 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:379044 original size:21 final size:21
Alignment explanation
Indices: 379018--379094 Score: 127
Period size: 21 Copynumber: 3.7 Consensus size: 21
379008 GTTGGGACCC
379018 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCCACAAA
*
379039 TGTATCGATACATTCCATAAA
1 TGTATCGATACATTCCACAAA
* *
379060 TGTATCAATACATTCTACAAA
1 TGTATCGATACATTCCACAAA
379081 TGTATCGATACATT
1 TGTATCGATACATT
379095 TGGATAAATT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (21 bp):
TGTATCGATACATTCCACAAA
Found at i:381018 original size:50 final size:50
Alignment explanation
Indices: 380964--381219 Score: 316
Period size: 50 Copynumber: 5.1 Consensus size: 50
380954 AGGTGTTGCC
*
380964 ATTGTTGACCATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTA
* * * * *
381014 ATTGTTAACTATTCTTCACTAACCTTTGACAATCAAAAGAGGTGGCCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTA
* *
381064 ATTGTTGACTATTTTTCACCAACCTTTGACAATCGAGAGAGGTGACCATA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTA
* * * * *
381114 ATTGTTGACGATTCTTCACCAATCTTTGATAATTGAGAGAGGTGGTCC-TA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGT-GACCGTA
* * * * * * *
381164 ATTGTTGACTATTTTTCACAAACTTTTGACAATAGAAAGAAGTGGCCGTA
1 ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTA
381214 ATTGTT
1 ATTGTT
381220 AACTCTAAAC
Statistics
Matches: 175, Mismatches: 29, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 3 0.02
50 169 0.97
51 3 0.02
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (50 bp):
ATTGTTGACTATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTA
Found at i:381141 original size:100 final size:100
Alignment explanation
Indices: 380964--381222 Score: 349
Period size: 100 Copynumber: 2.6 Consensus size: 100
380954 AGGTGTTGCC
* * *
380964 ATTGTTGACCATTCTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTAATTGTTAACTATTCT
1 ATTGTTGACTATTTTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTAATTGTTAACGATTCT
*
381029 TCACTAACCTTTGACAATCAAAAGAGGTGG-CCGTA
66 TCACCAACCTTTGACAATCAAAAGAGGTGGTCC-TA
* *
381064 ATTGTTGACTATTTTTCACCAACCTTTGACAATCGAGAGAGGTGACCATAATTGTTGACGATTCT
1 ATTGTTGACTATTTTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTAATTGTTAACGATTCT
* * ** *
381129 TCACCAATCTTTGATAATTGAGAGAGGTGGTCCTA
66 TCACCAACCTTTGACAATCAAAAGAGGTGGTCCTA
* * * * * *
381164 ATTGTTGACTATTTTTCACAAACTTTTGACAATAGAAAGAAGTGGCCGTAATTGTTAAC
1 ATTGTTGACTATTTTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTAATTGTTAAC
381223 TCTAAACAAC
Statistics
Matches: 139, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 137 0.99
101 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (100 bp):
ATTGTTGACTATTTTTCACCAACCTTTGACAATCGAGAGAGGTGACCGTAATTGTTAACGATTCT
TCACCAACCTTTGACAATCAAAAGAGGTGGTCCTA
Found at i:381455 original size:17 final size:17
Alignment explanation
Indices: 381433--381466 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
381423 TTTACCCATC
381433 AATGCACTAACATATAT
1 AATGCACTAACATATAT
* *
381450 AATGCATTAATATATAT
1 AATGCACTAACATATAT
381467 TTTATAATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.35
Consensus pattern (17 bp):
AATGCACTAACATATAT
Found at i:385509 original size:24 final size:24
Alignment explanation
Indices: 385475--385520 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
385465 AAACTTTATC
* *
385475 ATTTAATAAATAATAAGAATTACT
1 ATTTAAAAAATAATAAAAATTACT
385499 ATTTAAAAAATAATAAAAATTA
1 ATTTAAAAAATAATAAAAATTA
385521 AAAATATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (24 bp):
ATTTAAAAAATAATAAAAATTACT
Found at i:385574 original size:54 final size:53
Alignment explanation
Indices: 385492--385770 Score: 320
Period size: 53 Copynumber: 5.3 Consensus size: 53
385482 AAATAATAAG
* *
385492 AATTACTATTTAAAAAATAATAAAAATTAAAAATATATTTTATATTAAACCTTA
1 AATTATTATTTAAAAAATAATAAAAATTAAAAA-ATATTTTATATTAAATCTTA
* * *
385546 AATTATTATTTAAAAAATAATAAAAATTAAAAAA-ATATTTGTATTAAATTTTG
1 AATTATTATTTAAAAAATAATAAAAATTAAAAAATAT-TTTATATTAAATCTTA
* * * *
385599 AATTGCTT-TCTAAAAAATAATAAAAATT-AAAAATACTTTATTAATAAATCTTA
1 AATT-ATTATTTAAAAAATAATAAAAATTAAAAAATATTTTA-TATTAAATCTTA
* *
385652 AATTATTATTTAAAAAGTAATTAAAAATT-AAAAATATTTTATATTAAATCTCA
1 AATTATTATTTAAAAAATAA-TAAAAATTAAAAAATATTTTATATTAAATCTTA
* * **
385705 AATTATT-TTTTAAAAATAATAAAAATT-AAAACTATTTTAT-TTAAATCCCA
1 AATTATTATTTAAAAAATAATAAAAATTAAAAAATATTTTATATTAAATCTTA
*
385755 AATTATTTTTTAAAAA
1 AATTATTATTTAAAAA
385771 TTTAAATATT
Statistics
Matches: 195, Mismatches: 23, Indels: 17
0.83 0.10 0.07
Matches are distributed among these distances:
50 16 0.08
51 27 0.14
52 22 0.11
53 77 0.39
54 53 0.27
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (53 bp):
AATTATTATTTAAAAAATAATAAAAATTAAAAAATATTTTATATTAAATCTTA
Found at i:385719 original size:106 final size:105
Alignment explanation
Indices: 385492--385770 Score: 334
Period size: 107 Copynumber: 2.6 Consensus size: 105
385482 AAATAATAAG
* *
385492 AATTACTATTTAAAAAATAATAAAAATTAAAAATATATT-TTATATTAAACCTTAAATTATTATT
1 AATTACTTTTTAAAAAATAATAAAAATTAAAAATAT-TTATTA-A-TAAATCTTAAATTATTATT
* * **
385556 TAAAAAATAATAAAAATTAAAAAAATATTTGTATTAAATTTTG
63 TAAAAAATAATAAAAATTAAAAAAATATTTATATTAAATCTCA
* *
385599 AATTGCTTTCTAAAAAATAATAAAAATTAAAAATACTTTATTAATAAATCTTAAATTATTATTTA
1 AATTACTTTTTAAAAAATAATAAAAATTAAAAATA-TTTATTAATAAATCTTAAATTATTATTTA
* *
385664 AAAAGTAATTAAAAATTAAAAATAT-TTTATATTAAATCTCA
65 AAAAATAA-TAAAAATTAAAAAAATATTTATATTAAATCTCA
* * ** *
385705 AATTA-TTTTTTAAAAATAATAAAAATTAAAACTATTTTATT--TAAATCCCAAATTATTTTTTA
1 AATTACTTTTTAAAAAATAATAAAAATTAAAAATA-TTTATTAATAAATCTTAAATTATTATTTA
385767 AAAA
65 AAAA
385771 TTTAAATATT
Statistics
Matches: 151, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
103 22 0.15
105 32 0.21
106 43 0.28
107 50 0.33
108 4 0.03
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (105 bp):
AATTACTTTTTAAAAAATAATAAAAATTAAAAATATTTATTAATAAATCTTAAATTATTATTTAA
AAAATAATAAAAATTAAAAAAATATTTATATTAAATCTCA
Found at i:385930 original size:122 final size:120
Alignment explanation
Indices: 385679--385934 Score: 304
Period size: 122 Copynumber: 2.1 Consensus size: 120
385669 TAATTAAAAA
* * * * *
385679 TTAAAAATATTTTATATTAAATCTCAAATTATTTTTTAAAAATAATAAAAATTAAAACTATTTTA
1 TTAAAAATAATTTATAATAAATCTAAAATTATTTTTAAAAAATAATAAAAATTAAAAATATTTTA
* * * * *
385744 TTTAAATCCCAAATTATTTTTTAAAAATTTAAATATTTTATATTAAATTTTGAAATA-
66 TATAAATCCCAAATTAATATTTAAAAATATAAATA---TATATTAAATGTTGAAATAT
*
385801 TTAAAAAAAATTTATAATAAATCTAAAATTATTTTTAAAAAATAATAAAAATTGAAAAATATTTT
1 TTAAAAATAATTTATAATAAATCTAAAATTATTTTTAAAAAATAATAAAAATT-AAAAATATTTT
385866 ATAATAAATCCCAAATTAATATTTAAAAATAATAAA-A-A-ATTAAATGTTGAATTACTAT
65 AT-ATAAATCCCAAATTAATATTTAAAAAT-ATAAATATATATTAAATGTTGAA--A-TAT
385924 TTAAAAATAAT
1 TTAAAAATAAT
385935 AAAAAATTAT
Statistics
Matches: 115, Mismatches: 12, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
119 12 0.10
120 1 0.01
121 1 0.01
122 50 0.43
123 22 0.19
124 25 0.22
125 4 0.03
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (120 bp):
TTAAAAATAATTTATAATAAATCTAAAATTATTTTTAAAAAATAATAAAAATTAAAAATATTTTA
TATAAATCCCAAATTAATATTTAAAAATATAAATATATATTAAATGTTGAAATAT
Found at i:386131 original size:22 final size:22
Alignment explanation
Indices: 386106--386148 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
386096 TGTATATGAC
386106 TATAAT-GTAATGTACATATAAA
1 TATAATAGT-ATGTACATATAAA
*
386128 TATAATAGTATGTACGTATAA
1 TATAATAGTATGTACATATAA
386149 CTTTAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.37
Consensus pattern (22 bp):
TATAATAGTATGTACATATAAA
Found at i:386547 original size:22 final size:22
Alignment explanation
Indices: 386501--386551 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
386491 TGAATGTATG
* * *
386501 TATAACTATAATTAAATGCATA
1 TATAATTATAATTAAATACACA
*
386523 TATAATTATAATTAAATATACA
1 TATAATTATAATTAAATACACA
386545 TATAATT
1 TATAATT
386552 TTAACATGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.41
Consensus pattern (22 bp):
TATAATTATAATTAAATACACA
Found at i:386806 original size:52 final size:51
Alignment explanation
Indices: 386637--386950 Score: 292
Period size: 52 Copynumber: 6.1 Consensus size: 51
386627 TAAACCCAAT
*
386637 ATATATAAAATATTTTAAATTTTTATTATTTTTAAATAGAAATT-AGAGATTTA
1 ATATA-AAAATATTTTAAATTTTTATTA-TTTTAAATAGTAATTCA-AGATTTA
* * * * * **
386690 TTAT-AAAATATTCTTTAA-TTTTATT-TTTAAAAAAATAATTTGAGATTTA
1 ATATAAAAATATT-TTAAATTTTTATTATTTTAAATAGTAATTCAAGATTTA
* *
386739 ATGT-AGAATATTTTTAAAATTTTTATTATTTTAAGA-AGTAATTCAAGATTTA
1 ATATAAAAATA-TTTT-AAATTTTTATTATTTTAA-ATAGTAATTCAAGATTTA
* * *
386791 ACATAAAAATATTTTAAATTTTTAGTATTTTTTAAATAGTAATTTAAGATTTA
1 ATATAAAAATATTTTAAATTTTTA-T-TATTTTAAATAGTAATTCAAGATTTA
*
386844 ATATAAAATATATTTT-AATTTTTATTATTTTTAAATAGTAATTTGAA-ATTTA
1 ATATAAAA-ATATTTTAAATTTTTATTA-TTTTAAATAGTAA-TTCAAGATTTA
*
386896 ATATAAAAATATATTT---TTATTA-TATTTTAAATAGTAATTCAAGATTTA
1 ATATAAAAATAT-TTTAAATTTTTATTATTTTAAATAGTAATTCAAGATTTA
386944 ATATAAA
1 ATATAAA
386951 TATTTATTAG
Statistics
Matches: 220, Mismatches: 25, Indels: 37
0.78 0.09 0.13
Matches are distributed among these distances:
47 4 0.02
48 25 0.11
49 29 0.13
50 9 0.04
51 36 0.16
52 60 0.27
53 50 0.23
54 7 0.03
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.49
Consensus pattern (51 bp):
ATATAAAAATATTTTAAATTTTTATTATTTTAAATAGTAATTCAAGATTTA
Found at i:386814 original size:153 final size:153
Alignment explanation
Indices: 386643--386950 Score: 380
Period size: 153 Copynumber: 2.0 Consensus size: 153
386633 CAATATATAT
* *
386643 AAAATATTTTAAATTTTTATTA-TTTTTAAATAG-AAATTAGAGATTTATTATAAAATAT-TCTT
1 AAAATATTTTAAATTTTTAGTATTTTTTAAATAGTAAATTA-AGATTTAATATAAAATATAT-TT
* * * * *
386705 TAA-TTTTA-T-TTTTAAAAAAATAATTTGAGATTTAATGT-AGAATATTTTTAAAATTTTTATT
64 TAATTTTTATTATTTTAAAAAAATAATTTGAAATTTAATATAAAAATATATTT----TTATTA-T
386766 ATTTTAAGA-AGTAATTCAAGATTTAACATA
124 ATTTTAA-ATAGTAATTCAAGATTTAACATA
*
386796 AAAATATTTTAAATTTTTAGTATTTTTTAAATAGTAATTTAAGATTTAATATAAAATATATTTTA
1 AAAATATTTTAAATTTTTAGTATTTTTTAAATAGTAAATTAAGATTTAATATAAAATATATTTTA
* * *
386861 ATTTTTATTATTTTTAAATAGTAATTTGAAATTTAATATAAAAATATATTTTTATTATATTTTAA
66 ATTTTTATTATTTTAAAAAAATAATTTGAAATTTAATATAAAAATATATTTTTATTATATTTTAA
*
386926 ATAGTAATTCAAGATTTAATATA
131 ATAGTAATTCAAGATTTAACATA
386949 AA
1 AA
386951 TATTTATTAG
Statistics
Matches: 135, Mismatches: 12, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
152 1 0.01
153 51 0.38
154 38 0.28
155 11 0.08
156 1 0.01
157 24 0.18
158 9 0.07
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (153 bp):
AAAATATTTTAAATTTTTAGTATTTTTTAAATAGTAAATTAAGATTTAATATAAAATATATTTTA
ATTTTTATTATTTTAAAAAAATAATTTGAAATTTAATATAAAAATATATTTTTATTATATTTTAA
ATAGTAATTCAAGATTTAACATA
Found at i:386822 original size:60 final size:55
Alignment explanation
Indices: 386769--386876 Score: 132
Period size: 53 Copynumber: 2.0 Consensus size: 55
386759 TTTTATTATT
* *
386769 TTAAGAAGTAATTCAAGATTTAACATAAAA-ATATTTTAAATTTTTAGTA-TTTT-
1 TTAAAAAGTAATTCAAGATTTAACATAAAATATATTTT-AATTTTTAATATTTTTA
* * * *
386822 TTAAATAGTAATTTAAGATTTAATATAAAATATATTTTAATTTTTATTATTTTTA
1 TTAAAAAGTAATTCAAGATTTAACATAAAATATATTTTAATTTTTAATATTTTTA
386877 AATAGTAATT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 36 0.77
54 11 0.23
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.50
Consensus pattern (55 bp):
TTAAAAAGTAATTCAAGATTTAACATAAAATATATTTTAATTTTTAATATTTTTA
Found at i:388251 original size:10 final size:10
Alignment explanation
Indices: 388236--388261 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
388226 TTTTCTTACT
388236 TATATACATA
1 TATATACATA
388246 TATATACATA
1 TATATACATA
388256 TATATA
1 TATATA
388262 TAAACTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (10 bp):
TATATACATA
Found at i:389126 original size:20 final size:19
Alignment explanation
Indices: 389101--389230 Score: 89
Period size: 13 Copynumber: 7.7 Consensus size: 19
389091 TTTCAATGAT
389101 TTGTATCGATACATAAAGAG
1 TTGTATCGATACAT-AAGAG
389121 TTGTATCGATAC---A-A-
1 TTGTATCGATACATAAGAG
389135 -TGTATCGATACATAAAGAG
1 TTGTATCGATACAT-AAGAG
389154 TTGTATCGAT--AT-A-A-
1 TTGTATCGATACATAAGAG
*
389168 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGAG
389186 TTGTATCGATAC---A-A-
1 TTGTATCGATACATAAGAG
**
389200 -TGTATCGATACATAAGTT
1 TTGTATCGATACATAAGAG
389218 TTGTATCGATACA
1 TTGTATCGATACA
389231 ATGTAAGCTA
Statistics
Matches: 88, Mismatches: 3, Indels: 39
0.68 0.02 0.30
Matches are distributed among these distances:
13 31 0.35
15 4 0.05
16 5 0.06
17 1 0.01
18 3 0.03
19 23 0.26
20 21 0.24
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.35
Consensus pattern (19 bp):
TTGTATCGATACATAAGAG
Found at i:389194 original size:32 final size:33
Alignment explanation
Indices: 389102--389235 Score: 218
Period size: 32 Copynumber: 4.1 Consensus size: 33
389092 TTCAATGATT
389102 TGTATCGATACATAAAGAGTTGTATCGATACAA
1 TGTATCGATACATAAAGAGTTGTATCGATACAA
*
389135 TGTATCGATACATAAAGAGTTGTATCGATATAA
1 TGTATCGATACATAAAGAGTTGTATCGATACAA
*
389168 TGTATCGATACAT-AAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGAGTTGTATCGATACAA
**
389200 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGAGTTGTATCGATACAA
389232 TGTA
1 TGTA
389236 AGCTACTGCC
Statistics
Matches: 97, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
32 52 0.54
33 45 0.46
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (33 bp):
TGTATCGATACATAAAGAGTTGTATCGATACAA
Found at i:389256 original size:65 final size:65
Alignment explanation
Indices: 389102--389263 Score: 168
Period size: 65 Copynumber: 2.5 Consensus size: 65
389092 TTCAATGATT
* ** *
389102 TGTATCGATACATAAAGAGTTGTATCGATACAATGTATCGATACATAAAGAGTTGTATCGATATA
1 TGTATAGATACAT-AAGAAATGTATCGATACAATGTATCGATACATAAAGAGTTGTATCGATACA
389167 A
65 A
* *** **
389168 TGTATCGATACATAAGTGTTGTATCGATACAATGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATAGATACATAAGAAATGTATCGATACAATGTATCGATACATAAAGAGTTGTATCGATACAA
*
389232 TGTA-AGCTAC-TGCCAAGAAATGTATCGATACA
1 TGTATAGATACAT---AAGAAATGTATCGATACA
389264 CTACTCAAAT
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
62 1 0.01
63 4 0.05
64 20 0.24
65 46 0.55
66 13 0.15
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (65 bp):
TGTATAGATACATAAGAAATGTATCGATACAATGTATCGATACATAAAGAGTTGTATCGATACAA
Found at i:389291 original size:13 final size:13
Alignment explanation
Indices: 389273--389297 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
389263 ACTACTCAAA
389273 TGTATCGATACAT
1 TGTATCGATACAT
389286 TGTATCGATACA
1 TGTATCGATACA
389298 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:389321 original size:86 final size:85
Alignment explanation
Indices: 389187--389370 Score: 223
Period size: 86 Copynumber: 2.2 Consensus size: 85
389177 ACATAAGTGT
* **
389187 TGTATCGATACAATGTATCGATACATAAGTTTTGTATCGATACAATGTA-AGCTA-CTGCCAAGA
1 TGTATCGATACATTGTATCGATACATAAGTTTTGTATCGATACAATGTAGAGAAATCTGCCAAG-
*
389250 AATGTATCGATACACTACTCAAA
65 -ATGTATCGATACACTA-TAAAA
* * * *
389273 TGTATCGATACATTGTATCGATACACTGA-TCTTTGTATCGATAC-ATGTAGGGAAATTTGCCCA
1 TGTATCGATACATTGTATCGATACA-TAAGT-TTTGTATCGATACAATGTAGAGAAATCTGCCAA
389336 GATGTATCGATACACTATAAAA
64 GATGTATCGATACACTATAAAA
389358 TGTATCGATACAT
1 TGTATCGATACAT
389371 GTAGGCAAAT
Statistics
Matches: 86, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
85 17 0.20
86 46 0.53
87 17 0.20
88 6 0.07
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (85 bp):
TGTATCGATACATTGTATCGATACATAAGTTTTGTATCGATACAATGTAGAGAAATCTGCCAAGA
TGTATCGATACACTATAAAA
Found at i:389349 original size:52 final size:50
Alignment explanation
Indices: 389286--389434 Score: 208
Period size: 52 Copynumber: 2.9 Consensus size: 50
389276 ATCGATACAT
* *
389286 TGTATCGATACACTGATCTTTGTATCGATACATGTAGGGAAATTTGCCCAGA
1 TGTATCGATACACT-AT-TATGTATCGATACATGTAGGCAAATTTGCCCAGA
*
389338 TGTATCGATACACTATAAAATGTATCGATACATGTAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT--TATGTATCGATACATGTAGGCAAATTTGCCCAGA
*
389390 TGTATCGATACATTATTAAATGTATCGATACATGTAGGCAAATTT
1 TGTATCGATACACTATT--ATGTATCGATACATGTAGGCAAATTT
389435 TCATATTTCG
Statistics
Matches: 88, Mismatches: 6, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (50 bp):
TGTATCGATACACTATTATGTATCGATACATGTAGGCAAATTTGCCCAGA
Found at i:403310 original size:16 final size:17
Alignment explanation
Indices: 403291--403345 Score: 67
Period size: 18 Copynumber: 3.2 Consensus size: 17
403281 CATTCTCCGC
*
403291 AAAAAAAAAAACAAAGA
1 AAAAAAAAAAACAAACA
*
403308 AAAAACAAAAAAAAAACA
1 AAAAA-AAAAAACAAACA
*
403326 AAACAAAAAAAC-AACA
1 AAAAAAAAAAACAAACA
403342 AAAA
1 AAAA
403346 GGGTCCGGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
16 7 0.22
17 11 0.34
18 14 0.44
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAAAAAAAACAAACA
Found at i:403312 original size:11 final size:11
Alignment explanation
Indices: 403292--403345 Score: 72
Period size: 11 Copynumber: 4.6 Consensus size: 11
403282 ATTCTCCGCA
403292 AAAAAAAAAAC
1 AAAAAAAAAAC
*
403303 AAAGAAAAAAC
1 AAAAAAAAAAC
403314 AAAAAAAAAAC
1 AAAAAAAAAAC
403325 AAAACAAAAAAAC
1 -AAA-AAAAAAAC
403338 AACAAAAA
1 AA-AAAAA
403346 GGGTCCGGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
11 20 0.53
12 9 0.24
13 9 0.24
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:403321 original size:27 final size:27
Alignment explanation
Indices: 403291--403345 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 27
403281 CATTCTCCGC
403291 AAAAAAAAAAACAAAGAAAA-AACAAAA
1 AAAAAAAAAAACAAA-AAAACAACAAAA
*
403318 AAAAAACAAAACAAAAAAACAACAAAA
1 AAAAAAAAAAACAAAAAAACAACAAAA
403345 A
1 A
403346 GGGTCCGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 4 0.15
27 22 0.85
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (27 bp):
AAAAAAAAAAACAAAAAAACAACAAAA
Found at i:404819 original size:29 final size:28
Alignment explanation
Indices: 404787--404851 Score: 71
Period size: 28 Copynumber: 2.3 Consensus size: 28
404777 CCCCAAGTTG
*
404787 GTGGCACTCGTTTTAAAGCCCACAAGC-CA
1 GTGGCACTC-TTCTAAAGCCCACAA-CTCA
*
404816 GTGGCAAC-CTTCTAAAGTCCACAACTCA
1 GTGGC-ACTCTTCTAAAGCCCACAACTCA
404844 GTGGCACT
1 GTGGCACT
404852 TTTTTTTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
27 3 0.10
28 20 0.65
29 6 0.19
30 2 0.06
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.22
Consensus pattern (28 bp):
GTGGCACTCTTCTAAAGCCCACAACTCA
Found at i:404943 original size:34 final size:33
Alignment explanation
Indices: 404856--404995 Score: 147
Period size: 34 Copynumber: 4.2 Consensus size: 33
404846 GGCACTTTTT
* *
404856 TTTTTCTTTTTAAAGCCCACAACTCTGTGGCA-C
1 TTTTTCCTTTT-AAGCCCACAACTCCGTGGCACC
* * *
404889 TCTTTTCCTTCTAAGTCCACAGCTCCGTGGCACC
1 T-TTTTCCTTTTAAGCCCACAACTCCGTGGCACC
* *
404923 TTTCTTCCTTTTAAGCCCACAACTCCGTGCCATTC
1 TTT-TTCCTTTTAAGCCCACAACTCCGTGGCA-CC
* *
404958 TTTTTCCTTTTAAGTCCACAACTCTGTGGCACC
1 TTTTTCCTTTTAAGCCCACAACTCCGTGGCACC
*
404991 CTTTT
1 TTTTT
404996 AAGCCCACAA
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
33 25 0.28
34 59 0.67
35 4 0.05
ACGTcount: A:0.17, C:0.33, G:0.11, T:0.39
Consensus pattern (33 bp):
TTTTTCCTTTTAAGCCCACAACTCCGTGGCACC
Found at i:404972 original size:68 final size:68
Alignment explanation
Indices: 404823--404990 Score: 194
Period size: 68 Copynumber: 2.4 Consensus size: 68
404813 CCAGTGGCAA
* * * * * *
404823 CCTTCTAAAGTCCACAACTCAGTGGCACTTTTTTTTTTCTTTTTAAAGCCCACAACTCTGTGGCA
1 CCTTCT-AAGTCCACAACTCCGTGGCAC---CTTTCTTCCTTTTAAAGCCCACAACTCCGTGCCA
404888 CTCTTTT
62 CTCTTTT
* *
404895 CCTTCTAAGTCCACAGCTCCGTGGCACCTTTCTTCCTTTT-AAGCCCACAACTCCGTGCCATTCT
1 CCTTCTAAGTCCACAACTCCGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCCGTGCCACTC-
404959 TTTT
65 TTTT
* *
404963 CCTTTTAAGTCCACAACTCTGTGGCACC
1 CCTTCTAAGTCCACAACTCCGTGGCACC
404991 CTTTTAAGCC
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
67 20 0.24
68 39 0.46
71 19 0.23
72 6 0.07
ACGTcount: A:0.19, C:0.33, G:0.12, T:0.36
Consensus pattern (68 bp):
CCTTCTAAGTCCACAACTCCGTGGCACCTTTCTTCCTTTTAAAGCCCACAACTCCGTGCCACTCT
TTT
Found at i:405042 original size:29 final size:27
Alignment explanation
Indices: 404963--405042 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
404953 CATTCTTTTT
* * *
404963 CCTTTTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGCCCACAAGTCAGTGGCAC
**
404990 CCTTTTAAGCCCACAAGTTGGTGGCACC
1 CCTTTTAAGCCCACAAGTCAGTGGCA-C
405018 CCTTTTAAAGCCCACAAGTCAGTGG
1 CCTTTT-AAGCCCACAAGTCAGTGG
405043 AAACCTTCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 22 0.49
28 7 0.16
29 16 0.36
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (27 bp):
CCTTTTAAGCCCACAAGTCAGTGGCAC
Found at i:405253 original size:49 final size:48
Alignment explanation
Indices: 405078--405884 Score: 775
Period size: 43 Copynumber: 17.1 Consensus size: 48
405068 GATGGCGTCT
* * * * *
405078 TCTTCTAAGTCCAATATCGTTGGCCTTGAACCAGCATATTGGCACTTTTA
1 TCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCAC-CTCA
** *
405128 TCTTTAAAACTCAATATCGCTGGCCTTGAATCAGCATATT-G-A---CA
1 TCTTTAAGTC-CAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
* * * *
405172 CCTTGAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTCA
* * * *
405221 ACTTTAAGTCCAATATAGTTGGCCTTGAATCAGCACATTGGCATCTTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTCA
* * * *
405270 CCTTTAAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCACCTTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCA
* * *
405319 TCTTTAAGTCCAATGTAGCTGGTCTTGAATCAGCACATTGGCA---C-
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
* *
405363 -CTTTAAGTCCAATATCGCTGGCTTTGAATCAGCATATTGGCACCTTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCA
* *
405411 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C-
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
*
405455 -CTTTAAGTCCAATAACGCTGGCCTTGAATCAGCACATTGGCA---C-
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
* *
405498 -CTTTAAGTCCAATATCACTGGCCTTGAATGAGCACATTGGCA---C-
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
* * *
405541 -CTTTAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACCATCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCA
* *
405589 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC-
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
*
405636 -C---AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTCA
* * *
405681 TCTTTTAAGCCCAATGTCGCTGGCCTTGAACCAGCACATTGGCA---C-
1 TC-TTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
* * *
405726 -CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTTTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC----TCA
* * *
405777 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGC-AC---CTCA
* *
405829 TCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCA
1 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCA
405878 TCTTTAA
1 TCTTTAA
405885 CATTCCTAAG
Statistics
Matches: 641, Mismatches: 75, Indels: 83
0.80 0.09 0.10
Matches are distributed among these distances:
43 252 0.39
44 14 0.02
45 3 0.00
46 3 0.00
47 2 0.00
48 4 0.01
49 213 0.33
50 66 0.10
51 1 0.00
52 82 0.13
53 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (48 bp):
TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCA
Found at i:405408 original size:92 final size:92
Alignment explanation
Indices: 405083--405884 Score: 970
Period size: 92 Copynumber: 8.6 Consensus size: 92
405073 CGTCTTCTTC
* * * * ** *
405083 TAAGTCCAATATCGTTGGCCTTGAACCAGCATATTGGCACTTTTATCTTTAAAACTCAATATCGC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTC-CAATATAGC
* *
405148 TGGCCTTGAATCAGCATATTGACACCTT
65 TGGCCTTGAATCAGCACATTGGCACCTT
* * * * * * *
405176 GAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCCTCAACTTTAAGTCCAATATAGTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
405241 GGCCTTGAATCAGCACATTGGCATCTTCACCTT
66 GGCCTTGAATCAGCACATTGG------CACCTT
* * *
405274 TAAGTCCAATATCGTTGGCCTTGAATAAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
*
405339 GGTCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* *
405366 TAAGTCCAATATCGCTGGCTTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
405431 GGCCTTGAATCAGCACATTGGCACCTT
66 GGCCTTGAATCAGCACATTGGCACCTT
* *
405458 TAAGTCCAATAACGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCA-C
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATAT-AGC
*
405516 TGGCCTTGAATGAGCACATTGGCACCTT
65 TGGCCTTGAATCAGCACATTGGCACCTT
* * * *
405544 TAAGTCCAATATCGCTAGCCTTGAATTAGCATATTGGCACCATCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
*
405609 GGCCTTGAATCAGCACATTGGCACCTC
66 GGCCTTGAATCAGCACATTGGCACCTT
* * * * *
405636 CAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAATGTCGC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TTTAAGTCCAATATAGC
*
405701 TGGCCTTGAACCAGCACATTGGCACCTT
65 TGGCCTTGAATCAGCACATTGGCACCTT
* * *
405729 TAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTTTCATCTTTAAGTCCAATATC
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC---TTCATCTTTAAGTCCAATATA
* *
405794 GCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCATCTT
63 GCTGGCCTTGAATCAGCACATT---G-----G-CACCTT
* * *
405833 TAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAA
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAA
405885 CATTCCTAAG
Statistics
Matches: 617, Mismatches: 65, Indels: 46
0.85 0.09 0.06
Matches are distributed among these distances:
86 77 0.12
87 1 0.00
88 1 0.00
90 1 0.00
91 1 0.00
92 241 0.39
93 122 0.20
95 33 0.05
96 5 0.01
98 82 0.13
101 11 0.02
103 1 0.00
104 41 0.07
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (92 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAGCT
GGCCTTGAATCAGCACATTGGCACCTT
Found at i:405457 original size:21 final size:21
Alignment explanation
Indices: 405433--405543 Score: 50
Period size: 21 Copynumber: 5.2 Consensus size: 21
405423 ATGTAGCTGG
405433 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** **
405454 CCTTTAAGTCCAATAACGCTGGC-
1 CCTTGAA-T-C-AGCACATTGGCA
405477 -CTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* ** *
405497 CCTTTAAGTCCAATATCACTGG--
1 CCTTGAA-T-CAGCA-CATTGGCA
*
405519 CCTTGAATGAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
405540 CCTT
1 CCTT
405544 TAAGTCCAAT
Statistics
Matches: 61, Mismatches: 19, Indels: 20
0.61 0.19 0.20
Matches are distributed among these distances:
19 12 0.20
20 3 0.05
21 17 0.28
22 13 0.21
23 4 0.07
24 12 0.20
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.27
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:405765 original size:43 final size:43
Alignment explanation
Indices: 405684--405818 Score: 135
Period size: 52 Copynumber: 2.9 Consensus size: 43
405674 ACCCTCATCT
* * * *
405684 TTTAAGCCCAATGTCGCTGGCCTTGAACCAGCACATTGGCACC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
405727 TTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-G-------CACC
405779 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
405819 GTCTTTGTCA
Statistics
Matches: 76, Mismatches: 7, Indels: 18
0.75 0.07 0.18
Matches are distributed among these distances:
43 33 0.43
44 1 0.01
45 1 0.01
50 1 0.01
51 1 0.01
52 39 0.51
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (43 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
Found at i:405804 original size:52 final size:52
Alignment explanation
Indices: 405726--405875 Score: 237
Period size: 52 Copynumber: 2.9 Consensus size: 52
405716 ACATTGGCAC
* *
405726 CTTTAAGTCCAATATCGTTGGCCTTGAATCAGCATATTGGCGCCTTTTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
*
405778 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * * *
405830 CTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
405876 CATCTTTAAC
Statistics
Matches: 90, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 90 1.00
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:406776 original size:32 final size:32
Alignment explanation
Indices: 406717--406817 Score: 159
Period size: 32 Copynumber: 3.1 Consensus size: 32
406707 TTCAACGATT
*
406717 TGTATCGATACATAAAGAGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
*
406750 TGTATAGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
406782 TGTATCGATACATAAGT-TCTGTATCGATACAA
1 TGTATCGATACATAAGTGT-TGTATCGATACAA
406814 TGTA
1 TGTA
406818 AGCTACTGCC
Statistics
Matches: 64, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
31 1 0.02
32 51 0.80
33 12 0.19
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:406778 original size:19 final size:17
Alignment explanation
Indices: 406716--406812 Score: 66
Period size: 19 Copynumber: 5.8 Consensus size: 17
406706 TTTCAACGAT
406716 TTGTATCGATACATAAAGAG
1 TTGTATCGATACAT--A-AG
406736 TTGTATCGATAC--AA-
1 TTGTATCGATACATAAG
*
406750 -TGTATAGATACATAAGTG
1 TTGTATCGATACATAA--G
406768 TTGTATCGATAC--AA-
1 TTGTATCGATACATAAG
406782 -TGTATCGATACATAAG
1 TTGTATCGATACATAAG
406798 TTCTGTATCGATACA
1 -T-TGTATCGATACA
406813 ATGTAAGCTA
Statistics
Matches: 63, Mismatches: 2, Indels: 25
0.70 0.02 0.28
Matches are distributed among these distances:
13 21 0.33
15 5 0.08
16 1 0.02
17 2 0.03
19 22 0.35
20 12 0.19
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (17 bp):
TTGTATCGATACATAAG
Found at i:406787 original size:13 final size:13
Alignment explanation
Indices: 406769--406793 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
406759 ACATAAGTGT
406769 TGTATCGATACAA
1 TGTATCGATACAA
406782 TGTATCGATACA
1 TGTATCGATACA
406794 TAAGTTCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:406917 original size:52 final size:50
Alignment explanation
Indices: 406849--407003 Score: 211
Period size: 52 Copynumber: 3.0 Consensus size: 50
406839 CGATACACTA
* *
406849 CCCAAATGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTG
1 CCCAGATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTG
*
406901 CCCAGATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTG
1 CCCAGATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTG
* *
406953 CCCAGATGTATCGATACATTATTAAATGTATCGATACATGTAGGCAAATTT
1 CCCAGATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
407004 TCATATTTCG
Statistics
Matches: 93, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 91 0.98
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (50 bp):
CCCAGATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTG
Found at i:414966 original size:20 final size:20
Alignment explanation
Indices: 414913--414967 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
414903 AAATTCCCAG
**
414913 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
414933 ATGTATCGATACATTGAAT-A
1 ATGTATCGATACATTG-ATCA
414953 ATGTATCGATACATT
1 ATGTATCGATACATT
414968 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.94
21 2 0.06
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:415021 original size:19 final size:19
Alignment explanation
Indices: 414997--415059 Score: 75
Period size: 19 Copynumber: 3.6 Consensus size: 19
414987 AGCGATACAT
*
414997 TGTATCAATACAACACTTA
1 TGTATCGATACAACACTTA
415016 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
415029 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
415048 TGTATCGATACA
1 TGTATCGATACA
415060 TTTACTGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
16 6 0.16
18 1 0.03
19 20 0.54
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:415030 original size:32 final size:32
Alignment explanation
Indices: 414984--415061 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
414974 GCAGTAGCTT
*
414984 TGTAGCGATACATTGTATCAATACAACACTTA
1 TGTATCGATACATTGTATCAATACAACACTTA
*
415016 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCAATACAACACTTA
415048 TGTATCGATACATT
1 TGTATCGATACATT
415062 TACTGTTTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATTGTATCAATACAACACTTA
Found at i:415034 original size:13 final size:13
Alignment explanation
Indices: 415016--415040 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
415006 ACAACACTTA
415016 TGTATCGATACAT
1 TGTATCGATACAT
415029 TGTATCGATACA
1 TGTATCGATACA
415041 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:415950 original size:49 final size:49
Alignment explanation
Indices: 415779--416118 Score: 311
Period size: 49 Copynumber: 7.2 Consensus size: 49
415769 CTCGAAGATG
* * * *
415779 TGAAGAATGACAATGTGCTGATTCATGGCCAGCGACATTAGACTTGAAGA
1 TGAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
* ** * *
415829 -GGA-ATGCCAATGTGCTGAGACAAGGCCAGCGACATTGGGCTTAGGAATGT
1 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA--AA-GA
* * * *
415879 TAAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGA
1 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
* *
415928 TGAAGATACCAATGTGCTGATTCAAGGCCGGCGACATTGGACTT-AA-A
1 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
* * *
415975 -G--G-TGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGA
1 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
*
416020 TGAAGATGCCAATGTGCTGATTCAAGG-CAGCGACATTGG--TTTAA-A
1 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
* * *
416065 -G--G-TGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT--AGA
1 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
*
416108 AGAAGATGCCA
1 TGAAGATGCCA
416119 CCAACTTGTG
Statistics
Matches: 235, Mismatches: 36, Indels: 41
0.75 0.12 0.13
Matches are distributed among these distances:
41 19 0.08
42 13 0.06
43 34 0.14
44 7 0.03
45 2 0.01
46 7 0.03
47 39 0.17
48 14 0.06
49 62 0.26
50 3 0.01
51 1 0.00
52 34 0.14
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
Found at i:416035 original size:92 final size:90
Alignment explanation
Indices: 415878--416118 Score: 378
Period size: 92 Copynumber: 2.7 Consensus size: 90
415868 CTTAGGAATG
* * *
415878 TTAAAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGATACCAATGT
1 TTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGT
*
415943 GCTGATTCAAGGCCGGCGACATTGGAC
66 GCTGATTCAAGG-CAGCGACATTGG-C
*
415970 TTAAAGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGT
1 TTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGT
*
416035 GCTGATTCAAGGCAGCGACATTGGT
66 GCTGATTCAAGGCAGCGACATTGGC
* *
416060 TTAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGGACTT--AGAAGAAGATGCCA
1 TTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCA
416119 CCAACTTGTG
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
88 13 0.09
90 43 0.31
91 11 0.08
92 73 0.52
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (90 bp):
TTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGCCAATGT
GCTGATTCAAGGCAGCGACATTGGC
Found at i:416312 original size:87 final size:86
Alignment explanation
Indices: 416153--416394 Score: 344
Period size: 87 Copynumber: 2.8 Consensus size: 86
416143 AGTTACACCA
* * * * * * *
416153 ACTTGTGTGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTA
1 ACTTGTGGGCTTTGGAAAGGATGCCACTGACTTGTAGGCTTTGGAAAGGATGCCACTGACTTGTG
416217 GGCTTTTGAAGGTTGCCACTG
66 GGCTTTTGAAGGTTGCCACTG
* *
416238 ACTTGTGGGCTTTGGAAAGGATGCCACTGACTTGTAGGCTTTGGGAAAGGGTGCCACTAACTTGT
1 ACTTGTGGGCTTTGGAAAGGATGCCACTGACTTGTAGGCTTT-GGAAAGGATGCCACTGACTTGT
416303 GGGCTTTTGAAGGTTGCCACTG
65 GGGCTTTTGAAGGTTGCCACTG
* * * *
416325 ACTTGTGGGCTTTGGAAAAGATGCCACTGACTTGTAGGCTTTTG-AAGGTTGCCACTGACTTGGG
1 ACTTGTGGGCTTTGGAAAGGATGCCACTGACTTGTAGGCTTTGGAAAGGATGCCACTGACTTGTG
416389 GGCTTT
66 GGCTTT
416395 GGAAAAGATG
Statistics
Matches: 141, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
85 36 0.26
86 25 0.18
87 80 0.57
ACGTcount: A:0.19, C:0.17, G:0.31, T:0.32
Consensus pattern (86 bp):
ACTTGTGGGCTTTGGAAAGGATGCCACTGACTTGTAGGCTTTGGAAAGGATGCCACTGACTTGTG
GGCTTTTGAAGGTTGCCACTG
Found at i:416400 original size:57 final size:58
Alignment explanation
Indices: 416173--416404 Score: 292
Period size: 57 Copynumber: 4.0 Consensus size: 58
416163 TTTTGAAGGT
* * * *
416173 TGCCACTGACTTGTGGGC-TTTGAAAAAGATGCCACTGACTTGTAGGCTTTTG-AAGGT
1 TGCCACTGACTTGTGGGCTTTTG-AAAGGATGCCACTGACTTGTAGGCTTTGGAAAAGA
* * *
416230 TGCCACTGACTTGTGGGCTTTGGAAAGGATGCCACTGACTTGTAGGCTTTGGGAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTGACTTGTAGGCTTT-GGAAAAGA
* * *
416289 TGCCACTAACTTGTGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTGACTTGTAGGCTTTGGAAAAGA
* * **
416346 TGCCACTGACTTGTAGGCTTTTG-AAGGTTGCCACTGACTTGGGGGCTTTGGAAAAGA
1 TGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTGACTTGTAGGCTTTGGAAAAGA
416403 TG
1 TG
416405 AGGAATGTCT
Statistics
Matches: 159, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
57 106 0.67
58 28 0.18
59 25 0.16
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.30
Consensus pattern (58 bp):
TGCCACTGACTTGTGGGCTTTTGAAAGGATGCCACTGACTTGTAGGCTTTGGAAAAGA
Found at i:417855 original size:25 final size:24
Alignment explanation
Indices: 417821--417885 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 24
417811 ATTCGGACCC
*
417821 TTTTTGTTGTTTGTTTATT-TGTTTT
1 TTTTTGTTGTTT-TTT-TTCTCTTTT
417846 TTTTTGTTGTTTTTTTTCTCTTTT
1 TTTTTGTTGTTTTTTTTCTCTTTT
417870 TTTGTT-TTGTTTTTTT
1 TTT-TTGTTGTTTTTTT
417886 GCGGAGGACG
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
23 2 0.05
24 21 0.57
25 14 0.38
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.83
Consensus pattern (24 bp):
TTTTTGTTGTTTTTTTTCTCTTTT
Found at i:417869 original size:22 final size:22
Alignment explanation
Indices: 417821--417885 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 22
417811 ATTCGGACCC
* *
417821 TTTTTGTTGTTTGTTTATTTGTTTT
1 TTTTTGTTG-TT-TTT-TTTCTCTT
417846 TTTTTGTTGTTTTTTTTCTCTT
1 TTTTTGTTGTTTTTTTTCTCTT
*
417868 TTTTTGTTTTGTTTTTTT
1 TTTTTGTTGT-TTTTTTT
417886 GCGGAGGACG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
22 15 0.42
23 10 0.28
24 2 0.06
25 9 0.25
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.83
Consensus pattern (22 bp):
TTTTTGTTGTTTTTTTTCTCTT
Found at i:417886 original size:13 final size:12
Alignment explanation
Indices: 417821--417885 Score: 60
Period size: 12 Copynumber: 5.3 Consensus size: 12
417811 ATTCGGACCC
*
417821 TTTTTGTTGTTT
1 TTTTTTTTGTTT
* *
417833 GTTTATTTGTTT
1 TTTTTTTTGTTT
417845 TTTTTTGTTGTTT
1 TTTTTT-TTGTTT
*
417858 TTTTTCTCT-TTT
1 TTTTT-TTTGTTT
*
417870 TTTGTTTTGTTT
1 TTTTTTTTGTTT
417882 TTTT
1 TTTT
417886 GCGGAGGACG
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
11 2 0.05
12 26 0.63
13 12 0.29
14 1 0.02
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.83
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:431912 original size:13 final size:13
Alignment explanation
Indices: 431894--431953 Score: 57
Period size: 13 Copynumber: 4.2 Consensus size: 13
431884 ATCAACACTT
431894 ATGTATCGATACA
1 ATGTATCGATACA
431907 ATGTATCGATACAACA
1 ATGTATCGAT---ACA
431923 CTTATGTATCGATACA
1 ---ATGTATCGATACA
*
431939 TTGTATCGATACA
1 ATGTATCGATACA
431952 AT
1 AT
431954 ACTTATGTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 12
0.74 0.04 0.23
Matches are distributed among these distances:
13 23 0.59
16 6 0.15
19 10 0.26
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:431927 original size:32 final size:32
Alignment explanation
Indices: 431870--432032 Score: 265
Period size: 32 Copynumber: 5.1 Consensus size: 32
431860 GCTTTGTAGT
*
431870 GATACATTGTATAGAT-CAACACTTATGTATC
1 GATACATTGTATCGATACAACACTTATGTATC
*
431901 GATACAATGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAACACTTATGTATC
*
431933 GATACATTGTATCGATACAATACTTATGTATC
1 GATACATTGTATCGATACAACACTTATGTATC
* *
431965 GATAAATTATATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAACACTTATGTATC
*
431997 GATACATTGTATCGATACAATACTTATGTATC
1 GATACATTGTATCGATACAACACTTATGTATC
432029 GATA
1 GATA
432033 AATTTACTAT
Statistics
Matches: 121, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
31 14 0.12
32 107 0.88
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (32 bp):
GATACATTGTATCGATACAACACTTATGTATC
Found at i:432009 original size:13 final size:13
Alignment explanation
Indices: 431991--432015 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
431981 ACAACACTTA
431991 TGTATCGATACAT
1 TGTATCGATACAT
432004 TGTATCGATACA
1 TGTATCGATACA
432016 ATACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:432049 original size:21 final size:19
Alignment explanation
Indices: 431908--432056 Score: 75
Period size: 19 Copynumber: 8.7 Consensus size: 19
431898 ATCGATACAA
* *
431908 TGTATCGATACAACACTTA
1 TGTATCGATACAATACTTT
431927 TGTATCGATAC---A---T
1 TGTATCGATACAATACTTT
*
431940 TGTATCGATACAATACTTA
1 TGTATCGATACAATACTTT
431959 TGTATCGAT--AA-A---T
1 TGTATCGATACAATACTTT
* * *
431972 TATATCGATACAACACTTA
1 TGTATCGATACAATACTTT
431991 TGTATCGATAC---A---T
1 TGTATCGATACAATACTTT
*
432004 TGTATCGATACAATACTTA
1 TGTATCGATACAATACTTT
432023 TGTATCGATA-AATTTACTATT
1 TGTATCGATACAA--TACT-TT
432044 TGTATCGATACAA
1 TGTATCGATACAA
432057 ATTGTTGAAA
Statistics
Matches: 99, Mismatches: 9, Indels: 41
0.66 0.06 0.28
Matches are distributed among these distances:
13 30 0.30
15 2 0.02
16 6 0.06
17 2 0.02
18 2 0.02
19 40 0.40
20 4 0.04
21 11 0.11
22 2 0.02
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TGTATCGATACAATACTTT
Found at i:434415 original size:464 final size:460
Alignment explanation
Indices: 433534--434427 Score: 1120
Period size: 464 Copynumber: 1.9 Consensus size: 460
433524 ACTAATCCCC
* *
433534 ATTCTTTTCCAGATTAGGCATAATAAACATAGTCTTCTCACTCGGATAAATGATATTGATGCTTT
1 ATTCTTTTCCAGATTAGGCACAATAAACATAGTCTTCTCACTAGGATAAATGATATTGATGCTTT
*
433599 GGTTTCGCAAGAAAGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAACAGAAA
66 GGTTTCACAAGAAAGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAACAGAAA
* **
433664 CAAAGACAAATTATAGTAATGATCTTCATTCATTTTGTGATTAGTCACTATAAACACATTCTCCC
131 CAAACACAAATTATAGTAATGATCTTCATTCATTTTGTGATTAAACACTATAAACACATTCTCCC
* * * *
433729 CATTAGGAAAATGATATTGATGGCTTTTGTTTCCATGGAATCTTTTCTTTGCCCTATTTTTCTTA
196 CATTAGGAAAATGATACTGAAGACTTTTGTTTCCATGAAATCTTTTCTTTGCCCTATTTTTCTTA
* ** * *
433794 AAATCAAAGTTCTTCCCTTAAATATGACAAGCATCGATTCTCATAACAGTTTCCATTCTTTTCAA
261 AAACCAAAGTTCTTCCCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTCCAATCTTTTCAA
* * ** * * **
433859 GATTGAGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGTTGCTTTGGTGTCGCTTG
326 GATTGAGAACCAAAAACACATTCCCATCATTAAGATACATGACATTGACGATTTGGTGTCACAAG
* * *
433924 GAAAGCTCTTCTTTGCACTGGTTTTGATATATTCAAAGTTTAGCTGTTAAACAAGACAAACATTA
391 AAAAGCTCTTCTTTGCACT-GTTTTGATAGAATCAAAGTTTAGCTGTTAAACAAGACAAACATTA
433989 ATCTCG
455 ATCTCG
* * *
433995 ATTCTTTT-CAGGATTAGGCACCATAAACATAGTCTTCTTA-TAAGGATACATGATATTGATGCT
1 ATTCTTTTCCA-GATTAGGCACAATAAACATAGTCTTCTCACT-AGGATAAATGATATTGATGCT
* * *
434058 TTGGTTTCATAAGAAAGGC-TTTCTTCCCACCAGTTTTTGGT-AAGTCTAAGTTCATGCCTTAA-
64 TTGGTTTCACAAGAAA-GCATTT-TTCCCACCAATTTTT-GTAAAGTCTAAGTTCATGCCTCAAC
** *** * *
434120 ATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTTATTAAACACTATAAACACAT
126 A-GAAACAAACACAAATTATAGTAATGATCTTCATTCATTTTGTGATTAAACACTATAAACACAT
* * * * *
434185 TCTCCTCATTAGGATAAATGATACTGAAGATTTTTTTTTGCTTGAAAATCTTTTCTTTGCCCTAT
190 TCTCCCCATTAGGA-AAATGATACTGAAGACTTTTGTTTCCATG-AAATCTTTTCTTTGCCCTAT
* ** * *
434250 TTTTCTTAAAGCCAAAGTT-TATCCCTTAAATAAAACAATTATCGATTCTCATAATAGTCTCTAA
253 TTTTCTTAAAACCAAAGTTCT-TCCCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTCCAA
* * * *
434314 TCTTTTCAAGATTGGGAAGCAAAAATACGTTCCCATCATTAAGATACATGACATTGACGATTTGG
317 TCTTTTCAAGATTGAGAACCAAAAACACATTCCCATCATTAAGATACATGACATTGACGATTTGG
* *
434379 TGTCACAAGAAAATCTTTTCTTTCTGC-CAT-TTTTGATAGAATCAAAGTT
382 TGTCACAAGAAAAGCTCTTC-TT-TGCAC-TGTTTTGATAGAATCAAAGTT
434428 CATCCTTCAA
Statistics
Matches: 366, Mismatches: 55, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
460 3 0.01
461 71 0.19
462 102 0.28
463 25 0.07
464 158 0.43
465 3 0.01
466 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (460 bp):
ATTCTTTTCCAGATTAGGCACAATAAACATAGTCTTCTCACTAGGATAAATGATATTGATGCTTT
GGTTTCACAAGAAAGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAACAGAAA
CAAACACAAATTATAGTAATGATCTTCATTCATTTTGTGATTAAACACTATAAACACATTCTCCC
CATTAGGAAAATGATACTGAAGACTTTTGTTTCCATGAAATCTTTTCTTTGCCCTATTTTTCTTA
AAACCAAAGTTCTTCCCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTCCAATCTTTTCAA
GATTGAGAACCAAAAACACATTCCCATCATTAAGATACATGACATTGACGATTTGGTGTCACAAG
AAAAGCTCTTCTTTGCACTGTTTTGATAGAATCAAAGTTTAGCTGTTAAACAAGACAAACATTAA
TCTCG
Found at i:437503 original size:464 final size:465
Alignment explanation
Indices: 436610--437515 Score: 1275
Period size: 464 Copynumber: 2.0 Consensus size: 465
436600 TTACTCATAC
* *
436610 TAATCCGCATTCTTTTCCAAATTAGGCACCATAAACATAGTCTTCTCACTAGGATACATGATATT
1 TAATCCGCATTCTTTTCCAAATTAGGCACAATAAACATAGTCTTCTCACTAGGATACATGAAATT
* * * ** * *
436675 GCTGTTTTTGTTTCGCAAGAAAGGCATTTTTCCTACCAATTTTTGTAAAGTCAAAGTTCATGCCT
66 GATGCTTTGGTTTCGCAAGAAAGGCATTCATCCTACCAATTTTTATAAAGTCAAAGTTCATACCT
* * *
436740 CAAAAGAAACAAACACGAATTCTAGTATTAATCTTCATTCATTTTGTGATTAGTCACTATAAACA
131 CAAAAGAAACAAACACGAATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACAATAAACA
* * *
436805 CATTCTCCCCATTAGGATAAATGATATTGATGGTTTTTTTTTTCCATGGAATCTTTTCTTTGCCC
196 CATTCTCCCCATTAGGATAAATGATACTAATGGATTTTTTTTTCCATGGAATCTTTTCTTTGCCC
* * * ** * *
436870 TATTTTCCTTAAAATCTAAGTTCTTCCCCTTAAATATGACAAGCATCGATTCTCATAACATTTTC
261 TATTTTCCTTAAAACCAAAGTTCATCCCCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTC
** *
436935 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGTTGCTT
326 CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGATT
* * * *
437000 TGGTGTCACAAGGAAAGCTCTTCTTTGCATCGGTTTTGATAGATTCAAAGTTTACCTATTAAACA
391 TGGTGTCAAAAGAAAAGCTCTTCTTTCCATCGGTTTTGATAGAATCAAAGTTTACCTATTAAACA
437065 AGACAAACAT
456 AGACAAACAT
*
437075 TAATCCG-ATTCTTTT-CAGGATTAGGCACAATAAACATAGTCTTCTCA-TAAGGATACATGAAA
1 TAATCCGCATTCTTTTCCA-AATTAGGCACAATAAACATAGTCTTCTCACT-AGGATACATGAAA
*
437137 TTGATGCTTTGGTTTCGCAAGAAAGGCATTCATCCTACCAATTTTTATAAAGTCTAAGTTCATAC
64 TTGATGCTTTGGTTTCGCAAGAAAGGCATTCATCCTACCAATTTTTATAAAGTCAAAGTTCATAC
* ** * * * *
437202 CTCAAATGAGCCAAACATGGATTCTAGTAATGATCTTCATTTATTTTGTGATTAGGCACAATAAA
129 CTCAAAAGAAACAAACACGAATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACAATAAA
* * *
437267 CACATTCTCCTCATTAGGATAGATGATACTAAT-GATTTTTTTTTGCATGGAAATCTTTTCTTTG
194 CACATTCTCCCCATTAGGATAAATGATACTAATGGATTTTTTTTTCCATGG-AATCTTTTCTTTG
* ** *
437331 CCTTATTTTCCTTAAAACCAAAGTTCAT-CCCTTAAATAAAACAATTATCGATTCTCATAATAGT
258 CCCTATTTTCCTTAAAACCAAAGTTCATCCCCTTAAATAAAACAAGCATCGATTCTCATAACAGT
* *
437395 CTCCA-TCTTTTTCAAGATTGGGAAGCAAAAACACATTCCTTTCATTAGGATACATGACATTAAT
323 CTCCATTC-TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAAT
* **
437459 GATTTGGTGTCAAAAGAAAAGCTTTTCTTTCCATCTTTTTTTGATAGAATCAAAGTT
387 GATTTGGTGTCAAAAGAAAAGCTCTTCTTTCCATC-GGTTTTGATAGAATCAAAGTT
437516 CATCCTTCAA
Statistics
Matches: 386, Mismatches: 50, Indels: 11
0.86 0.11 0.02
Matches are distributed among these distances:
462 2 0.01
463 134 0.35
464 243 0.63
465 7 0.02
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (465 bp):
TAATCCGCATTCTTTTCCAAATTAGGCACAATAAACATAGTCTTCTCACTAGGATACATGAAATT
GATGCTTTGGTTTCGCAAGAAAGGCATTCATCCTACCAATTTTTATAAAGTCAAAGTTCATACCT
CAAAAGAAACAAACACGAATTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACAATAAACA
CATTCTCCCCATTAGGATAAATGATACTAATGGATTTTTTTTTCCATGGAATCTTTTCTTTGCCC
TATTTTCCTTAAAACCAAAGTTCATCCCCTTAAATAAAACAAGCATCGATTCTCATAACAGTCTC
CATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTAATGATT
TGGTGTCAAAAGAAAAGCTCTTCTTTCCATCGGTTTTGATAGAATCAAAGTTTACCTATTAAACA
AGACAAACAT
Found at i:439144 original size:767 final size:761
Alignment explanation
Indices: 437656--439311 Score: 2043
Period size: 767 Copynumber: 2.2 Consensus size: 761
437646 TTGACACATC
* * ** ** *** * *
437656 TTCCTTAAAATCAAAGTTCATCCCTCAAATGAGACAAATATTGATTCTTGTAATAGTCTCCATTC
1 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCAATTCACATAACAATCTCCATTC
* * ** * * * *
437721 ATTTCGAGATTGAAAACCAAAAACACTTTCACTTCTTTAGGATACAAGACATTGATGCTTTAGTG
66 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTG
* * * * *
437786 CCATAAGGAACCTTTTTTTTCTCCATTTTTGACAAAATCAACGTTTGTCCCTCAAATTACATGAA
131 CCATAAGGAACCTTTTCTTTATCCATTTTCGACAAAATCAAAGTTTCTCCCTCAAATTACATGAA
* * * * *
437851 TTTGTATTGTTGGAACAATCTCCACCTTTTCATGATTGGGGCCAGCAAACAAGTTCTCCTCATTG
196 TTTGGATTGTTGGAACAAGCTCCACATTTTCATGATTAGGGCCAGCAAACAAGTTCTCCTCAATG
* * *
437916 ATATTGATGCTTTGGTTTCGAAAGAAAAGCTTTTCTTTGACTTATTTTGCTATAAATCAATGTTC
261 ATATTGATGCTTTGGTTTCAAAAGAAAAGCATTTCTTTGACTGATTTTGCTATAAATCAATGTTC
* * * *
437981 ACCCCTTAAATGAGATAAATATAGATTATGGTAAAAGTCTCCATTGTTTTTGTGATTGGGCACCA
326 ACCCCTTAAATAAGATAAATATAGATTATGGTAAAAGTCTCCAATCTTTTTGGGATTGGGCACCA
* * *
438046 AAAATCTTTATTGAGGTGACGGTCTGGCTTTGCAAGAAAGGGTTTCTTTACCACCAGTTTTCATA
391 AAAATCCTTATTGAGATGACAGTCTGGCTTTGCAAGAAAGGGTTTCTTTACCACCAGTTTTCATA
* * *
438111 AAATCAAAATTTGTCTCTTAAATAAGATAAACATGAATACTGAGACTAATCCCCATTATTTTTAG
456 AAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACTCAGACTAATCCCAATTATTTTTAG
* * **
438176 GATTAGGCACCACAAACATATCTTCTCATTAGGATACACGATATTGATGTTTTGGTTTCGTAAGA
521 GATTAGGCACCACAAACAAATCTTCTCATTAGGATACACGATACTGATGTTTTGGTTTCACAAGA
*
438241 AAGGCATGTTTCGCACTAATTTTTGAAAGTCCAAGTTCATGCCTCAAAAAAGACAAACATGGATT
586 AAGGCATGTTTCGCACCAATTTTTGAAAGTCCAAGTTCAT-CCTCAAAAAAGACAAACATGGATT
* *
438306 CTAGTAATGATCTTCATTTATTTTGTGATTAGTCACTATAAACACATTCTCCCCATTAGGATAAC
650 CTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAAC
**
438371 TGATATTAATGGTTTT-TTTCCATGG-AATCTTTTCTTTGTCCTATT
715 TGATATTAATGGTTTTCTTTCCATGGAAATCTTTTCTTTGTAATATT
* * * * * *
438416 TTCCTTAAAATCAAAGTTCTTCCCTTATATATGACAAGCATCTATTCTCATAACAATCTCCATT-
1 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCAATTCACATAACAATCTCCATTC
* *
438480 TTTTCAAGATTGGGAACCAAAAATACATTCCCTTCATTAGGATACATGACATTGTTGCTTT-GAT
66 TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAG-T
*
438544 GCCATAAAGGAACCTTTTCTTTATGCCATTTTCGA-ATGAATCAAAGTTTCTCCCTCAAATTACA
130 GCCAT-AAGGAACCTTTTCTTTAT-CCATTTTCGACA-AAATCAAAGTTTCTCCCTCAAATTACA
* * *
438608 TGAATTTGGATTGTTGTAACAAGCTCCACATTTTCATGATTAGGGCCA-TAAATAAG-T-T-CTC
192 TGAATTTGGATTGTTGGAACAAGCTCCACATTTTCATGATTAGGGCCAGCAAACAAGTTCTCCTC
* * *
438669 AATGATATTGATTCTTTGGTTTCAAAAGAAAAG-ATTTCTTTGACATGA-TTTGTTTTAAATCAA
257 AATGATATTGATGCTTTGGTTTCAAAAGAAAAGCATTTCTTTGAC-TGATTTTGCTATAAATCAA
* * *
438732 TGTTCATCCCTCT-AATAAGATAAATATAGATTCTGGTAATAGTCTCCAATCTTTTTGGGATTGG
321 TGTTCACCCCT-TAAATAAGATAAATATAGATTATGGTAAAAGTCTCCAATCTTTTTGGGATTGG
* * *
438796 GCACCAAAAATCCTTATTGAGATACATGACATTAACTATTTGGCTTTGCAAGAAAAGGTTTTTTT
385 GCACCAAAAATCCTTATTGAG----ATGACAGT--C----TGGCTTTGCAAG-AAAGGGTTTCTT
* * * * * *
438861 TACCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAA-ACAAACATTAGTACTCATACTA
439 TACCACCAGTTTTCATAAAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACTCAGACTA
* *
438925 ATCCCAATTCA-TTTTAGGATTAGGCACCATAAACACAATCTTCTCATTAGGATACATGATACTG
504 ATCCCAATT-ATTTTTAGGATTAGGCACCACAAACA-AATCTTCTCATTAGGATACACGATACTG
** * * *
438989 ATGTTTTGG-TTCACAAGAGTGGCATTTTTCTCACCAATTTTTGTGAAGTCCAAGTTTGCAT-CT
567 ATGTTTTGGTTTCACAAGAAAGGCATGTTTCGCACCAATTTTTG-AAAGTCCAAG-TT-CATCCT
* ** *
439052 TAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTTGGCAC-ATAAACA
629 CAAAAAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * *
439116 CATTCTCCTCATTAGGATAAATTGATATTGATGGTTTTCGTTTCTATGGAAATCTTTTCTTTGTA
694 CATTCTCCCCATTAGGAT-AACTGATATTAATGGTTTTC-TTTCCATGGAAATCTTTTCTTTGTA
439181 ATATT
757 ATATT
* * * * * *
439186 TTCCTTAAAATGAAAGTTCATCGCTTAAATAAGACAACCATCAATTCACGTAATAGTCTCCATTG
1 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCAATTCACATAACAATCTCCATTC
* *
439251 TTTTCAAGAATT-GGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTT
66 TTTTCAAG-ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
439312 TGTGTCGCAA
Statistics
Matches: 764, Mismatches: 104, Indels: 45
0.84 0.11 0.05
Matches are distributed among these distances:
756 98 0.13
757 36 0.05
758 2 0.00
759 58 0.08
760 79 0.10
761 76 0.10
762 1 0.00
766 111 0.15
767 163 0.21
768 2 0.00
769 11 0.01
770 71 0.09
771 53 0.07
772 3 0.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (761 bp):
TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCAATTCACATAACAATCTCCATTC
TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTAGTG
CCATAAGGAACCTTTTCTTTATCCATTTTCGACAAAATCAAAGTTTCTCCCTCAAATTACATGAA
TTTGGATTGTTGGAACAAGCTCCACATTTTCATGATTAGGGCCAGCAAACAAGTTCTCCTCAATG
ATATTGATGCTTTGGTTTCAAAAGAAAAGCATTTCTTTGACTGATTTTGCTATAAATCAATGTTC
ACCCCTTAAATAAGATAAATATAGATTATGGTAAAAGTCTCCAATCTTTTTGGGATTGGGCACCA
AAAATCCTTATTGAGATGACAGTCTGGCTTTGCAAGAAAGGGTTTCTTTACCACCAGTTTTCATA
AAATCAAAATTTGTCTCTTAAATAAGACAAACATGAATACTCAGACTAATCCCAATTATTTTTAG
GATTAGGCACCACAAACAAATCTTCTCATTAGGATACACGATACTGATGTTTTGGTTTCACAAGA
AAGGCATGTTTCGCACCAATTTTTGAAAGTCCAAGTTCATCCTCAAAAAAGACAAACATGGATTC
TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCCCATTAGGATAACT
GATATTAATGGTTTTCTTTCCATGGAAATCTTTTCTTTGTAATATT
Found at i:439642 original size:475 final size:470
Alignment explanation
Indices: 438843--440275 Score: 1727
Period size: 475 Copynumber: 3.0 Consensus size: 470
438833 ATTTGGCTTT
* * ** * * *
438843 GCAAGAAAAGGTTTTTTTTACCACCATTTTTCATAGAATCAAAGTTTGTCTCTTAAATAAACAAA
1 GCAAGAAAAGCTTTTATTT-CCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAGACAAA
* * * * * *
438908 CATTAGTACTCATACTAATCCCAATTCATTTT-AGGATTAGGCACCATAAACACAATCTTCTCAT
65 CATAAATACTCATACTAATCCC-ATTC-TTTTCAGGATTAGGCATCATAAACATAGTTTTCTCAT
* * *
438972 TAGGATACATGATACTGATGTTTTGG-TTCACAAGAGTGGCATTTTTCTCACCAATTTTTGTGAA
128 TAGGATACATGATATTGATGTTTTGGTTTCGCAAGAAT-GCATTTTTCTCACCAATTTTTGTGAA
* *
439036 GTCCAAGTTTGCATCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
192 GTCCAAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGA
* *
439101 TTTGGCAC-ATAAACACATTCTCCTCATTAGGATAAATTGATATTGATGGTTTTCGTTTCTATGG
257 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAA-TGATATTGAT-GTTTTCTTTTC-ATGG
* * *
439165 AAATCTTTTCTTTGTAATATTTTCCTTAAAATGAAAGTTCATCGCTTAAATAAGACAACCATCAA
319 AAATCTTTTCTTTGTAATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAA
*
439230 TTCACGTAATAGTCTCCATTGTTTTCAAGAATTGGAACCTAAAACACATTCCCTTCATTAGGATA
384 TTCAAGTAATAGTCTCCATTGTTTTCAAGAATTGGAACCTAAAACACATT-CCTTCATTAGGATA
* *
439295 CATGACATTAATGCTTTTGTGTC
448 CATGACATTGATGCTTTAGTGTC
*
439318 GCAAGAAAAGCTTTTATTTCCACTGTTTTTGATAGAATCAAAGCTTATCTCTTAAATATGACAAA
1 GCAAGAAAAGCTTTTATTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATA-GACAAA
* * **
439383 CATAAATACTCATACCAATCCTCATTCTTTTCAGGATTAGGCATCGTAAACATAGTTTTCTTGTT
65 CATAAATACTCATACTAATCC-CATTCTTTTCAGGATTAGGCATCATAAACATAGTTTTCTCATT
* *
439448 AGGATACATGATATTGATGTTTTGGTTTTGCAAGAACTGCATTTTTCTCACCAATTTTTGTAAAG
129 AGGATACATGATATTGATGTTTTGGTTTCGCAAGAA-TGCATTTTTCTCACCAATTTTTGTGAAG
* * * *
439513 TCCAAGTTTGCACCTCAAATTAGACAAACATTGATTCCAGTAATGATCTTCATTCATGTTGTGAT
193 TCCAAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
*
439578 TAGGCACTATAAACACATTTTCCTCATTAGGATAAATGATATTGATGTTTTCTTTTGCATGGAAA
258 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGTTTTCTTTT-CATGGAAA
* * *
439643 TCTTTT-TTT-TACCCTATTTACCTTAAAATCAAAGTTCATCCCTTAAATCAGACAAGCATCAAT
322 TCTTTTCTTTGTA--ATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAAT
* * *
439706 TCAAGTAATAGTCTCCATTGTTTTCAGGAATGGGAACCTAAAACACATTGCTTTCATTAGGATAC
385 TCAAGTAATAGTCTCCATTGTTTTCAAGAATTGGAACCTAAAACACATT-CCTTCATTAGGATAC
* *
439771 ATGACATCGATGCTTTGGTGTC
449 ATGACATTGATGCTTTAGTGTC
*
439793 GCAAGAAAAGCTTTTATTTCCA-TCGTTTTTGATAGAATCAAA-C-TGTCTCTTAAATAAGATAA
1 GCAAGAAAAGCTTTTATTTCCACT-GTTTTTGATAGAATCAAAGCTTGTCTCTTAAAT-AGACAA
* * * * * * * * *
439855 ACATGAATACTCATACTAATCCAACTCTTTTCCGAATTAGGCTTAATGAACATAGTTTTCTCACT
64 ACATAAATACTCATACTAATCCCATTCTTTTCAGGATTAGGCATCATAAACATAGTTTTCTCATT
* ** * * * * * * *
439920 AGGATGCACAATATTGGTGCTCTGGTTTCGCAAGAAAGGATTTTTC-CTGCCAATTTTTATGAAG
129 AGGATACATGATATTGATGTTTTGGTTTCGCAAGAATGCATTTTTCTC-ACCAATTTTTGTGAAG
* * ** * * *
439984 TCTAGGTTCACGCCTCAAATGATACAAACATGGATTCTAGTAATGATCTTCATCCATTTTGTGAT
193 TCCAAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGAT
* * * * *
440049 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATTATACTGACGATTTT-TTTCCTTGGAAA
258 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATG-TTTTCTTTTCATGGAAA
* *** * *
440113 TCTTCTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGACAAGCATCGATTC
322 TCTTTTCTTTGTAATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTC
** * * * * * * * * *
440178 TTGTAACAATTTCTATTCTTTCCAA-TATTGGGAACCAAAAACACATTCCTTCATTAGGATATAT
387 AAGTAATAGTCTCCATTGTTTTCAAGAATT-GGAACCTAAAACACATTCCTTCATTAGGATACAT
*
440242 GACATTGATGCTTTAGTTTC
451 GACATTGATGCTTTAGTGTC
* *
440262 ACAAGAAATGCTTT
1 GCAAGAAAAGCTTT
440276 CTTTCCCCAA
Statistics
Matches: 825, Mismatches: 117, Indels: 38
0.84 0.12 0.04
Matches are distributed among these distances:
469 46 0.06
470 92 0.11
471 124 0.15
472 65 0.08
473 37 0.04
474 44 0.05
475 279 0.34
476 110 0.13
477 28 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (470 bp):
GCAAGAAAAGCTTTTATTTCCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTAAATAGACAAAC
ATAAATACTCATACTAATCCCATTCTTTTCAGGATTAGGCATCATAAACATAGTTTTCTCATTAG
GATACATGATATTGATGTTTTGGTTTCGCAAGAATGCATTTTTCTCACCAATTTTTGTGAAGTCC
AAGTTTGCACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAG
GCACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGTTTTCTTTTCATGGAAATCTT
TTCTTTGTAATATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCAAGT
AATAGTCTCCATTGTTTTCAAGAATTGGAACCTAAAACACATTCCTTCATTAGGATACATGACAT
TGATGCTTTAGTGTC
Found at i:443797 original size:33 final size:32
Alignment explanation
Indices: 443752--443820 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 32
443742 CTACCACTGT
443752 TTGTATCGATACATGGA-ATATTGTATCGATACA
1 TTGTATCGATACAT-GATA-ATTGTATCGATACA
*
443785 TTGTATCTATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGAT-AATTGTATCGATACA
443818 TTG
1 TTG
443821 CTTGTAACTG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
32 2 0.06
33 30 0.91
34 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.39
Consensus pattern (32 bp):
TTGTATCGATACATGATAATTGTATCGATACA
Found at i:450121 original size:20 final size:21
Alignment explanation
Indices: 450085--450123 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
450075 TTACAAATTT
*
450085 CTTCATTTTTACTTCAAAACA
1 CTTCATTTTTACATCAAAACA
450106 CTTCATTTTT-CATCAAAA
1 CTTCATTTTTACATCAAAA
450124 TCACCAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (21 bp):
CTTCATTTTTACATCAAAACA
Found at i:452502 original size:19 final size:19
Alignment explanation
Indices: 452478--452514 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
452468 TGTATCGATG
452478 CATTGTATCGATACATGAT
1 CATTGTATCGATACATGAT
452497 CATTGTATCGATACATGA
1 CATTGTATCGATACATGA
452515 AACTGGCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
CATTGTATCGATACATGAT
Found at i:452567 original size:20 final size:20
Alignment explanation
Indices: 452542--452595 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
452532 TTACCACTGT
*
452542 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
452562 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
452582 TTGTATCGATACAT
1 TTGTATCGATACAT
452596 TGCTTGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:456912 original size:476 final size:473
Alignment explanation
Indices: 453577--462362 Score: 9275
Period size: 476 Copynumber: 18.7 Consensus size: 473
453567 TTGATATGCA
* * *
453577 ATATTGAT-ATTTTTGTTTCGCAAGAAAGGCATTTTTCC-ACCAATTTTTATAAAGTCTGAGTTC
1 ATATTGATGA-TTTGGTTTCGCAAGAAAGGC-TTTTTCCTACCAATTTTTATAATGTCTAAGTTC
* * * * *
453640 ATGCCTTAAATGAGACAAACATGGATTTTAGTAATTTTCTTCTCTT--TTTTATGATTTA-GCAC
64 GTGCCTCAAATGAGACAAACATGGATTCTAGTAA-TGTCTT-TATTCATTTTATGA-TTAGGCAC
* * * * *
453702 TTTAAACACATTCGCCTCATTAGGATAAATGATATTGATGA-TTTCTTTTGCGTGGAAATCTTTT
126 TTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTT
* * * *
453766 CTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCACATAAATAAGACAAGCATCGATTCTCGTAA
191 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * * * * *
453831 CAGTCTCTACTATTTTCTAGATTGGAAACCTAAAATACA-TTCATTTCATCAGGATACATGACAT
256 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTC-CTTCATTAGGATACATGACAT
453895 TGATGCTTTGGTGTCACAAGAAAAGCTTTT-TTTCCACC-TATTTTGATAGAATCAAAGTTTGTC
320 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGT-TTTTGATAGAATCAAAGTTTGTC
* * * * *
453958 TCTTAAAAAAGA-AAAGCATAAATACTCATACTAATCTCCATTTTTTCAGGATTAGGCATCATAA
384 TCTTAAATAAGACAAA-CATGAATACTCATACTAATCACCATTCTTTCAGGATTAGGCACCATAA
*
454022 ACATAGTCTTCTCATAAGGATACATG
448 ACATAGTCTTCTCATAAGGATACACG
* ** * * *
454048 ATATTGAT-ATTTTGTTTTTACACA-AAAGGCTTTCTTCCCACTAATTTTTGTAATGTCTAAGTT
1 ATATTGATGA-TTTGGTTTCGCA-AGAAAGGCTTT-TTCCTACCAATTTTTATAATGTCTAAGTT
* * * * * **
454111 TGTGCCTCAAATGAG-CTAAACAAGGATTCTAGTAATGGTCTTCAATCATTTTGTGATTAGGCTG
63 CGTGCCTCAAATGAGAC-AAACATGGATTCTAGTAAT-GTCTTTATTCATTTTATGATTAGGCAC
* * * * * * *
454175 TATAAACAGATTCTCCTCATTAGGATAAATGTTGCAAATGGTTTTCTTTTGCATGGAAATCTTTT
126 TTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTT
** * *
454240 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAATTATCGATTCTCCTTA
191 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * * * * *
454305 CAGTCTCCATAATTTTTAGGATTGGTAACCTAAAACATATTCCCATT-ATTAAGATACATGACAT
256 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC-TTCATTAGGATACATGACAT
* * *
454369 TGATGC-TTGGTGTCACAAAAAAAGCTTTTCTATCCACCGTTTTTGATAAAATCAAAGTTTGTCT
320 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * *
454433 CTTAAGTAAGACAAACATGAATAC-CATACTAGT-ACACATTCTATTTAGGATTAGGCACCATAA
385 CTTAAATAAGACAAACATGAATACTCATACTAATCAC-CATTCT-TTCAGGATTAGGCACCATAA
* *
454496 ACATAGTCTTCTCATATGGATACATG
448 ACATAGTCTTCTCATAAGGATACACG
* * * * * * **
454522 ATATTAATGCTTTGGCTTT-GTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTGA
1 ATATTGATGATTTGG-TTTCGCAAGAAAGGCTTT-TTCCTACCAATTTTTATAATGTCTAAGTTC
* * * * * * * *
454586 GTGCCTCAGATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCAATTTGTGATTAGACAGTA
64 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATG-TCTTTATTCATTTTATGATTAGGCACTT
* * * * *
454651 TAAACACATTCTGCTCACTAGGATAAAAGATACTAGTGTTTTTCTTTTACATGGAAATCTTTTCT
128 TAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCT
* * * * * *
454716 TTGCCCTATTTTTTCTTAAAATCAAAGTTAATCCCTTAAATAAAATAAGCATCTATTCTCGTAAT
193 TTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * *
454781 AGTCTCCATTATTTTCAGGATTAGGAACCTAAAACACATTCCCTTC-TTCAGGATACATGACATT
257 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATT-AGGATACATGACATT
*
454845 GATGCTTTGGTGTCGCAAGAAAAGCTTTTAC-TTCCACCGTTTTTGATAGAATCAAAG--T-T-T
321 GATGCTTTGGTGTCACAAGAAAAGCTTTT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
* * * * *
454905 ATT---T----CAAAAATGAATACTCACACTAATCACCACTT-TTTTAGGATTAGGCACTATAAA
385 CTTAAATAAGACAAACATGAATACTCATACTAATCACCA-TTCTTTCAGGATTAGGCACCATAAA
* * * **
454962 TATGGGCTTCTCATAAGGATACGTG
449 CATAGTCTTCTCATAAGGATACACG
* * * * *
454987 ATATTGAT-ACTTTGGTTTCACAAGAAAGGCTTTTTTCATACCAATTTTTGTAATGTCTAATTTT
1 ATATTGATGA-TTTGGTTTCGCAAGAAAGGC-TTTTTCCTACCAATTTTTATAATGTCTAAGTTC
*
455051 GTGCCTCAAATGAGACAAACATGGATTCTACTAGTAATGATCTTTATTCATTTTATGATTTGGCA
64 GTGCCTCAAATGAGACAAACATGGA-T-T-CTAGTAATG-TCTTTATTCATTTTATGATTAGGCA
* * * * *
455116 CTTTAAGCACATTCTCCTTAGTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTT
125 CTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTT
* * *
455181 TCTTTGCCTTACTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGT
190 TCTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGT
* * * * * ** * *
455246 AACAGTCTCCATTCTTTTTAGGATTGAGAACCTAAAACACATTCCCTTTTTTGGGATACCTGACA
254 AACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACA
* * * * **
455311 TTGATGCTTTGGAGTCACAAGAAAACCTTTTTTTTCCAGCAATTTTGATAGAATCAAAGTTTGTC
319 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * * *
455376 TCTTAAATATGACAAACATGAATACTCACACTAATTCTA--ATTCTTTTCAAGATTTGGCACTAT
384 TCTTAAATAAGACAAACATGAATACTCATACTAA-TC-ACCATTC-TTTCAGGATTAGGCACCAT
** *
455439 AAACATAGTAGTCTCATAAGGATGCACG
446 AAACATAGTCTTCTCATAAGGATACACG
* * *
455467 AT-TTAGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCCACAAATTTTTATTAA-GTCTAAGTTC
1 ATATT-GATGATTTGGTTTCGCAAGAAAGGCTTTTTCCTACCAATTTTTA-TAATGTCTAAGTTC
* * * * * * * *
455530 ATCCCTCAAAAGAGGCAAACATTGATTCTAGT-ATTTCTCTTCTTTCATTTTACGATTAGGCACT
64 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGTCT-TT-ATTCATTTTATGATTAGGCACT
* * * * * *
455594 TTGAACACATTCGCCTCATTAGGATAATTGATACTAATGATTTT-TTTTGCATAGAAATCTTTTA
127 TTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTC
* * * *
455658 TTTGCCCTATTTTCCTTAAAATTAAATTTCATCCCTTAAATAAGATAAGTATCGATTCTCGTAAC
192 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * *
455723 AGTTTCCATTATTTCCAAGATTGGGAACCTAAAACACATTTCCTTCATT---A-AGAT-ACATTG
257 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTG
* ** * * *
455783 ATGCTTTGATGTTGCAAGAAAAGATCTTCTTTCCACCGGTTTTGATAGAATCAAAGTTTGTCTCT
322 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
455848 TAAATAAAATAAACATGAATACTCATACTAATCACCATTCTTTTCAGGATTAGGCACCATAAACA
387 TAAATAAGACAAACATGAATACTCATACTAATCACCATTC-TTTCAGGATTAGGCACCATAAACA
* ** *
455913 TAGCCCCCCCATAAGGATACACG
451 TAGTCTTCTCATAAGGATACACG
* * * *
455936 ATATTGAT-ACTTTGGTTTCGCAAGAAACGG-TTTTTGCCCACCATTTTTTGTAATATCTAAGTT
1 ATATTGATGA-TTTGGTTTCGCAAGAAA-GGCTTTTT-CCTACCAATTTTTATAATGTCTAAGTT
*
455999 CGTGCCTCAAATGAG--AAACATGGATTCTAGTAATGATCTTTATTCATTTTATGATTTGGCACT
63 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG-TCTTTATTCATTTTATGATTAGGCACT
* * * * * * * *
456062 TTAAGCACATTCTCCTCAATAGGATAAATGATATTGATCAATTTATTTTACATAGAAATCTTTTC
127 TTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTC
* ** * ** *
456127 TTGGCCCTATTTTCCTTAAAATCAAAGTTCATCTTTTAAATAAGACAAACATTAATTCTTGTAAC
192 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * * ** * * *
456192 AGTCTCCATTATTTTCAGGATTGAGAACCTAAAACACGTTCCCTTCATTATTATACAAGAAAATG
257 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTG
* * **
456257 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCTTTTTTAATAGAATCAAAGTTACTCTCT
322 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * * *
456322 TAAATAAGA-AACACACGAATACTCGTACTAATCCCCATTTTTTTCAAGATTAGGCACCATAAAC
387 TAAATAAGACAA-ACATGAATACTCATACTAATCACCA-TTCTTTCAGGATTAGGCACCATAAAC
* * *
456386 ATTGTCTTCTAATAAGGCTACACG
450 ATAGTCTTCTCATAAGGATACACG
* * * * **
456410 ATATTGATGTTTTGGTTTCGCAAGAAAGGCTTTCTTCCTAACAATTTTTATAATGTTTATGTTTA
1 ATATTGATGATTTGGTTTCGCAAGAAAGGCTTT-TTCCTACCAATTTTTATAATGTCTAAGTTCG
* * * * ** *
456475 TGCCTCAAATGAGCCAAACAAGGATTCTAGTAATAGTTTTTATTCATTTTGTGATTAGGCTGTAT
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GTCTTTATTCATTTTATGATTAGGCACTTT
* *
456540 AAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGAAAATCTATTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCTT
* * *
456605 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAACCATCGACTCTCGTAATAG
194 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* *
456670 TCTCCATTATTTTCAAGATTGGGAACCTAAAACATATTTCCTTCATTAAGATACATGACATTGAT
259 TCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTGAT
* *
456735 GCTTTGGTGTCTCAAGAAAAGCTTTTCTTTCAACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
324 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
*
456800 AATAAGGCAAACATGAATACTCATACTAATCACCATTACTTTCAGGATTAGGCACCATAAACATA
389 AATAAGACAAACATGAATACTCATACTAATCACCATT-CTTTCAGGATTAGGCACCATAAACATA
456865 GTCTTCTCATAAGGATACACG
453 GTCTTCTCATAAGGATACACG
* *
456886 ATATTGATGATTTGGTTTCGCAAGAAAGGCTTTTTTTCTACCAA--TTT-T--TG--TAA--T-A
1 ATATTGATGATTTGGTTTCGCAAGAAAGGC-TTTTTCCTACCAATTTTTATAATGTCTAAGTTCG
* * * *
456941 T---T----T---------AT-G-TT-T-GTAATAGTATTTATTCATTTTGTGATTAGGCTCTAT
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GTCTTTATTCATTTTATGATTAGGCACTTT
* * *
456986 AAACACATTCTCCTCAGTAGGATAAATGATAGTAATAATTTTCTTTTACATGGAAATCTTTTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCTT
* * * * * *
457051 TGCCTTATTTTCTTTAAAATCAGAGTTCATCTCTTAAAAAAGACAAGCATCGATTCTCGTAATAG
194 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * *
457116 TCTCCATTATTTTCAGGATTGGGAACCTAAAACACA-TTCCATTCATTGGGATACATAACATTGA
259 TCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC-TTCATTAGGATACATGACATTGA
* * * * * * * *
457180 TGCTTTCGAGTCACAACAAAAGCTTTTCTTTTCACCGATTTTGATAGAATCAAAGTTTATCGCCT
323 TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* ** * * * *
457245 AAATACGACAAACACAAATACTCACACTAATTC-CAATTCTTTTCAAGATTAGGCACCGTAAACA
388 AAATAAGACAAACATGAATACTCATACTAA-TCACCATTC-TTTCAGGATTAGGCACCATAAACA
** * *
457309 TAGTAGTCTCATCAGGATACAAG
451 TAGTCTTCTCATAAGGATACACG
* * ** * * **
457332 AT-TTAGATGCTTTGGTTTCGCAAGAGAGGCTTTTTCCCCCCAATTTTTATAAAGTCTAATTTTA
1 ATATT-GATGATTTGGTTTCGCAAGAAAGGCTTTTTCCTACCAATTTTTATAATGTCTAAGTTCG
* * * * * * *
457396 TCCCTTAAAAGAGGCAAACATCGATTCCAGTAATTATCTTCT-TTCATTTTATGATTAGGCACTT
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAA-TGTCTT-TATTCATTTTATGATTAGGCACTT
* * * * * * ** *
457460 TAAACACATTCGCCTCATTAGGATAATTAATACTAGTGATTTTTTTTTGCATAAAAATCTTTTAT
128 TAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCT
* **
457525 TTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTAATAACA
193 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
457590 GTCTCCATTATTTCCAAGATTGGGAACCTAAAACACATTTCCTTCATTAAGATACATGACATTGA
258 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTGA
* *** * * *
457655 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTTATAAAATCAAATTTTGTCTCTT
323 TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * *
457720 AAATAAGACAAATATGAATACTCATACTAATCACCATTCTTTTCAGCAATAGGCACCATAAACAT
388 AAATAAGACAAACATGAATACTCATACTAATCACCATTC-TTTCAGGATTAGGCACCATAAACAT
*
457785 AGTCTTCTAATAAGGATACACG
452 AGTCTTCTCATAAGGATACACG
* * * * *
457807 TTATTGAT-ACTTTGATTTCGCAAGAAAGGTTTTCTTCCCA-CAATTTTTTGTAATGTCTAAGTT
1 ATATTGATGA-TTTGGTTTCGCAAGAAAGGCTTT-TTCCTACCAA-TTTTTATAATGTCTAAGTT
* * *
457870 CGTGCCTCAAATGAGACAAACATGGATTCTAGCAATGATCTTTATTCGTTTTATGATTTGGCACT
63 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG-TCTTTATTCATTTTATGATTAGGCACT
* * * * *
457935 TTAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTTTCTTTTACAAGGAAATATTTTC
127 TTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTC
* * ** *
458000 TTTGCCCTATTTTGCATAAAATCAAAGTTCATCTTTTAAATAAGACAAGCATTGATTCTCGTAAC
192 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* ** * * * * *
458065 AGTCTCCATTATTTTCAGGATTGGGAACCTAAAACATGTTCCCTTCGTTAGGATACAAGATAATG
257 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTG
* * * * * * *
458130 ATGTTTTGGTGTCGCAAGAAAAGCTTTTCATTCCCCCTTTTTTGATAGAATTAAAGTTAGTCTCT
322 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * *
458195 TAAATAAGA-AACATATGAATACTCCTACTAATCCCCATTTTTTCAGGATTAGGCACCATAAACA
387 TAAATAAGACAA-ACATGAATACTCATACTAATCACCATTCTTTCAGGATTAGGCACCATAAACA
* *
458259 TAGCCTTCTAATAAGGATACACG
451 TAGTCTTCTCATAAGGATACACG
* * * * *
458282 ATATTAATGGTTTAGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTTTTATAATGCCTATGTTCG
1 ATATTGATGATTTGGTTTCGCAAGAAAGGC-TTTTTCCTACCAATTTTTATAATGTCTAAGTTCG
* * * * ** *
458347 TGCCTCAAATGAG-CTAAACAAGGATTCTAGTAATAATTTTTATTCATTTTGTGATTAGGCTGTA
65 TGCCTCAAATGAGAC-AAACATGGATTCTAGTAAT-GTCTTTATTCATTTTATGATTAGGCACTT
* ** *
458411 TAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTTTCTTTCGCATGGAAATCTATTCT
128 TAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCT
* * * * * *
458476 TTACCCTGTTTTCCTAAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCATAATA
193 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * * * *
458541 GTCTCCAATATTTT-AAGATTGGGAACCTAAAACATATTTCCTTCATTAAGATAAATGAAATTGG
258 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTGA
* * * *
458605 TGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTATCTCTT
323 TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * *
458670 GAAA-AAGATAAACATGAATACTTATACTAATTACCATTGTTTTCAGGATTAGGCACCATAAACA
388 -AAATAAGACAAACATGAATACTCATACTAATCACCATT-CTTTCAGGATTAGGCACCATAAACA
*
458734 TAGTCTTCTCATATGGATACACG
451 TAGTCTTCTCATAAGGATACACG
* * * * * *
458757 ATATTGATGCTTTGGTTTCGCAAGAAAGGGTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCA
1 ATATTGATGATTTGGTTTCGCAAGAAAGGCTTTTTCCT-ACCAATTTTTATAATGTCTAAGTTCG
* * * * * *
458822 TCCCTC-AATAAAGGCAAACATGGATTTTAGTAATTATCTTTTTTCATTTTATGATTAGGCACTT
65 TGCCTCAAAT-GAGACAAACATGGATTCTAGTAA-TGTCTTTATTCATTTTATGATTAGGCACTT
* * * * * * * * *
458886 TAAGCACATGCACCTCATTAGGATAAATGATACTAACGATTAT-ATTTGCTTGGAAATCTTTTAT
128 TAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCT
* *
458950 CTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
193 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* *
459015 TTCTCCATCATTTT-AAGATTGGGAACCTAAAACACATTTCCTTCATTCA-GATACATGACATTG
258 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATT-AGGATACATGACATTG
* * *
459078 ATACTTTGGTGTCGCAAGAAAA-CATTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCAC
322 ATGCTTTGGTGTCACAAGAAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
*
459142 TTAAATAAGACAAACATGAATACTCATACTATTCACCATTCTTTTCAGGATTAGGCACCATAAAC
386 TTAAATAAGACAAACATGAATACTCATACTAATCACCATTC-TTTCAGGATTAGGCACCATAAAC
* * *
459207 ATAGTCTTGTTATAATGATACACG
450 ATAGTCTTCTCATAAGGATACACG
* * * * *
459231 ATATTGA-CACTTTGTTTTCGCAAGAAAGGCTTTTTTTCCCACCATTTTTTGTAATGTCTAAGTT
1 ATATTGATGA-TTTGGTTTCGCAAGAAAGGC--TTTTTCCTACCAATTTTTATAATGTCTAAGTT
* * *
459295 CGTGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTTATTCATTTTATGATTTGGCATT
63 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG-TCTTTATTCATTTTATGATTAGGCACT
* * ** * ** *
459360 TTAAGCACATTCTCCTCATTAGGATAAATGATATTGGTCATTTTCTTTTGTATGGAATTCTTTTC
127 TTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTC
* * * ** *
459425 TTGGCCCTATTTTTCTTTAAATCAAAGTTCATCTTTTAAATAAGACAAGCACCGATTCTCGTAAC
192 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * * *
459490 AGTCTCCATTA-TTTCAAGATTGAGAACCTAAAACACGTTCCCTTCATTAGGATACAAGACAATG
257 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTG
* * ** * *
459554 ATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACTTTTTTTTATAGAATCAAAGTTAGTCTCT
322 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* * * * *
459619 TAAATAAGA-AACACATGAATACTTATACTAATCCCCATTTTTTTTCTGGATTAGGCACCACAAA
387 TAAATAAGACAA-ACATGAATACTCATACTAATCACCA--TTCTTTCAGGATTAGGCACCATAAA
* *
459683 CATAGTCTTCTAATAAGGCTACACG
449 CATAGTCTTCTCATAAGGATACACG
* * * * *
459708 ATGTTGATGTTTTGGTTTCGCAAAAAAGGCTTTCTTCCTACCAATTTTTATAATGTCTATGTTTG
1 ATATTGATGATTTGGTTTCGCAAGAAAGGCTTT-TTCCTACCAATTTTTATAATGTCTAAGTTCG
* * * * ** *
459773 TGCCTCAAATGAGCCAAACAAGGATTCTAGTAATAGTTTTTTATTCATTTTGTGATTAGGCTGTA
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAAT-G-TCTTTATTCATTTTATGATTAGGCACTT
* * *
459838 TAAACACATTCTCCTCATTAGGATAAATGGTACTAATGATTTTCTTTTACATGAAAATCTATTCT
128 TAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCT
* * *
459903 TTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACTCTCGTAATA
193 TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * *
459968 GTCTCCATTATTTTCAAGGTTGGGAACCTAAAACATATTTCCTTCATTAAGATACATGGCATTGA
258 GTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTGA
*** * * *
460033 TGCTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCATCTTTTTTGATAGAATCAAAGTTTTTCTCTT
323 TGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* * * * *
460098 AAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTTAGGATTAGGCACTACAAGCAT
388 AAATAAGACAAACATGAATACTCATACTAATCACCATTC-TTTCAGGATTAGGCACCATAAACAT
* * *
460163 TGTCTTCTCATTAGGATACGCG
452 AGTCTTCTCATAAGGATACACG
* * * *
460185 ATATTGAT-ATTTTTGTTTCGCAAGAAAGGCATTTTCC-ACCAATTTTTGA-AAAGTCTAAGTTT
1 ATATTGATGA-TTTGGTTTCGCAAGAAAGGCTTTTTCCTACCAATTTTT-ATAATGTCTAAGTTC
* * * * * * * *
460247 GTGCCTCAAATGAGACAAATATAGATTCTAGTAATGATCTTCAATCATTTTGTAATTTGGCACTA
64 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATG-TCTTTATTCATTTTATGATTAGGCACTT
* * * * * *
460312 TAATCACATTTTCCTTATTAGGGTAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCT
128 TAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCT
* *
460377 TTGCCCTATATTTTCCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTGTAA
193 TTGCCC--TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * * * * * *
460442 TAGTCTCCATTATTTTCAGGATTGGGAACCTAAAATACCTTCCCTTTATTTGGACACATGACATT
256 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATT
* * * *
460507 GATGCTTTGGAGTCACAAGAAAAGCTTTTCTCTCCACTGATTTTGATAGAATCAAAGTTTGTCTC
321 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * ** *
460572 TTAAAGACGACAAATATGAATACTCATACTAATTC-CAATTCTTTTCATTATTAGGCACCGTAAA
386 TTAAATAAGACAAACATGAATACTCATACTAA-TCACCATTC-TTTCAGGATTAGGCACCATAAA
* ** *
460636 CATAATAGTCTCATAAGGATACATG
449 CATAGTCTTCTCATAAGGATACACG
* * * * * * * *
460661 GTATTGA-GCTTTGGTTTTGCAAGAAAAGCTTTCTTCGTACCAATTTTTATAAAGCCTAAGTTCA
1 ATATTGATGATTTGGTTTCGCAAGAAAGGCTTT-TTCCTACCAATTTTTATAATGTCTAAGTTCG
* * * *
460725 T-CTCTCAAAGGAGACAAACATTGATTCTAGTAATTATCCTCT-TTCATTTTATGATTAGGCACT
65 TGC-CTCAAATGAGACAAACATGGATTCTAGTAA-TGT-CTTTATTCATTTTATGATTAGGCACT
* * * *
460788 TTAAAGACATTCGCCTCTTTGGGATAAATGATACTAATG-TTTT-TTTTGA-ATGGAAATCTTTT
127 TTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTT-ACATGGAAATCTTTT
* * *
460850 ATTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAAGACAAGCATCAATTCTCGTAA
191 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* *
460915 CAG-CTTCCATTACTTTT-AGGATTGGGAACCTAAAACA-ATTTCCTTCATTAGGATACATGACC
256 CAGTC-TCCATTA-TTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACA
* * * * *
460977 TTGATGCATTGGTATCGCAAGAAAAGCTTTTCTTTCGACC----TTGAT---A-C--A---TGAC
319 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTC
* * * * * ** *** *
461029 -CTT-GAT--G-C--A-TTG-GTA-TC---GTAA-CAGC-TTCCAGT-ACTTTTAGGCACCGTAA
384 TCTTAAATAAGACAAACATGAATACTCATACTAATCACCATT-CTTTCAGGATTAGGCACCATAA
** *
461078 ACATAGTAGTCTCATCAA-GATACAAG
448 ACATAGTCTTCTCAT-AAGGATACACG
* ** *
461104 AT-TTAGATGCTTTGGTTTCGCAA-AAATGGCTTTTTTCCCCCCAATTTTTATAAAGTCTAAGTT
1 ATATT-GATGATTTGGTTTCGCAAGAAA-GGC-TTTTTCCTACCAATTTTTATAATGTCTAAGTT
** * * * * * * * **
461167 TATCCCTTAAAAGAGGCAAACATCGATTCCAGTAATTATCTTCT-TTCATTTTATGAGCAGGCAC
63 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAA-TGTCTT-TATTCATTTTATGATTAGGCAC
* * * * * *
461231 TTTAAACACATTCACCTCATTAGGATAATTAATACTAATGATTTTTTTTTGCATAGAAATCTTTT
126 TTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTT
* * * *
461296 ATTTGCCCAATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCATAA
191 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * *
461361 TAGTCTCCATTATTTCCAAGATTGGGAACCTAAAGCACATTTCCTTCATTAAGATACATGACATT
256 CAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATT
* * * ** * *
461426 TACGCTTTGGAGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCATAGTTTG----
321 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
461487 -T---TAAGACAAACATGAATACTCATACTAATCACCATTCCTTTCAGGATTAGGCACCATAAAC
386 TTAAATAAGACAAACATGAATACTCATACTAATCACCATT-CTTTCAGGATTAGGCACCATAAAC
461548 ATAGTCTTCTCATAAGGATACCACG
450 ATAGTCTTCTCATAAGGATA-CACG
** * * *
461573 ATATTGAT-ACTTCAGTTTTGCAAGAAAGGCTTTTTTCCCA-CAATTTTTCGTAATGTCTAAGTT
1 ATATTGATGA-TTTGGTTTCGCAAGAAAGGC-TTTTTCCTACCAATTTTT-ATAATGTCTAAGTT
* * * *
461636 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCATTATTCATTTTGTGATTTGGCACT
63 CGTGCCTCAAATGAGACAAACATGGATTCTAGTAATG-TCTTTATTCATTTTATGATTAGGCACT
* * * * *
461701 TTAAACACATTCTCCTCCTTAGGATAAATGATATTAACGATTTTCTTTTACAAGGAAATATTTTC
127 TTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTC
* ** * *
461766 TTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTTTTAAATAAGACAAGCATCGATTCTGGCAAC
192 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * * * * *
461831 AGTCT--ATTATTTTCAGGATTGGGAACCTAAAACACGTTCCCCTCATTAGGATACAAGATAATG
257 AGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTG
** * * *
461894 ATGCTTTGGTGTCGGAAGAAAAGCTTTTCTTTCCACCTTTTTTGATAGAATCAAAGTTAGTCTAT
322 ATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT
* *
461959 TAAATAAGA-AACACATGAATACTCATACCAATCCCCATTTCTTTCAGGATTAGGCACCATAAAC
387 TAAATAAGACAA-ACATGAATACTCATACTAATCACCA-TTCTTTCAGGATTAGGCACCATAAAC
*
462023 ATAGTCTTCTAATAAGGATACACG
450 ATAGTCTTCTCATAAGGATACACG
* * * * *
462047 ATAATAATGTTTTGGTTTCACAAGAAAGGCTTTCTTCCTACCAA-TTTTATAATGTCTATGTTCG
1 ATATTGATGATTTGGTTTCGCAAGAAAGGCTTT-TTCCTACCAATTTTTATAATGTCTAAGTTCG
** * * * * ** *
462111 TGCCTCAAATGATCCAAACAAGGATTCTAGTAATAGTTTTTATTCATTTTGTGATTACGCTGTAT
65 TGCCTCAAATGAGACAAACATGGATTCTAGTAAT-GTCTTTATTCATTTTATGATTAGGCACTTT
* * *
462176 AAACACATTCTCCTCATTAGGATAAATAATACTAATGATTTTCTTTCACATGGAAATCTATTCTT
129 AAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCTT
* * *
462241 TGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGACT-TCGTAATAG
194 TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
* * * *
462305 TCTCCCTTATTTTCAAGATTAGGAACCTAAAACATATTTCCTTCATTAAGATACATGA
259 TCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGA
462363 TGATGAAAAC
Statistics
Matches: 6947, Mismatches: 1124, Indels: 485
0.81 0.13 0.06
Matches are distributed among these distances:
442 2 0.00
443 44 0.01
444 131 0.02
445 29 0.00
446 462 0.07
447 63 0.01
448 3 0.00
449 3 0.00
450 4 0.00
451 6 0.00
452 4 0.00
454 4 0.00
455 4 0.00
456 2 0.00
457 3 0.00
458 4 0.00
459 5 0.00
460 4 0.00
461 2 0.00
462 3 0.00
463 1 0.00
464 4 0.00
465 124 0.02
466 19 0.00
467 125 0.02
468 349 0.05
469 488 0.07
470 49 0.01
471 37 0.01
472 128 0.02
473 349 0.05
474 1251 0.18
475 1236 0.18
476 1349 0.19
477 379 0.05
478 142 0.02
479 69 0.01
480 65 0.01
481 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (473 bp):
ATATTGATGATTTGGTTTCGCAAGAAAGGCTTTTTCCTACCAATTTTTATAATGTCTAAGTTCGT
GCCTCAAATGAGACAAACATGGATTCTAGTAATGTCTTTATTCATTTTATGATTAGGCACTTTAA
ACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTACATGGAAATCTTTTCTTTG
CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTC
TCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCTTCATTAGGATACATGACATTGATGC
TTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
TAAGACAAACATGAATACTCATACTAATCACCATTCTTTCAGGATTAGGCACCATAAACATAGTC
TTCTCATAAGGATACACG
Found at i:457853 original size:475 final size:475
Alignment explanation
Indices: 456963--462362 Score: 5867
Period size: 475 Copynumber: 11.4 Consensus size: 475
456953 ATAGTATTTA
* * * * * *
456963 TTCATTTTGTGATTAGGCTCTATAAACACATTCTCCTCAGTAGGATAAATGATAGTAATAATTTT
1 TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
* * * * *
457028 CTTTTACATGGAAATCTTTTCTTTGCCTTATTTTCTTTAAAATCAGAGTTCATCTCTTAAAAAAG
66 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* *
457093 ACAAGCATCGATTCTCGTAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACA-TTCCA
131 ACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC-
** * * * * * * *
457157 TTCATTGGGATACATAACATTGATGCTTTCGAGTCACAACAAAAGCTTTTCTTTTCACCGA-TTT
195 TTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTT
* * * * ** * *
457221 TGATAGAATCAAAGTTTATCGCCTAAATACGACAAACACAAATACTCACACTAATTC-CAATTCT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA-TCACCATTCT
* * ** * *
457285 TTTCAAGATTAGGCACCGTAAACATAGTAGTCTCATCAGGATACAAGAT-TTAGATGCTTTGGTT
323 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATT-GATGCTTTGGTT
* * * * * ** * * * *
457349 TCGCAAGAGAGGCTTTTTCCCCCCAATTTTTATAAAGTCTAATTTTATCCCTTAAAAGAGGCAAA
387 TCGCAAGAAAGGTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA
* *
457414 CATCGATTCCAGTAATTATCTTCT
452 CATGGATTCTAGTAATTATCTTCT
* * * *
457438 TTCATTTTATGATTAGGCACTTTAAACACATTCGCCTCATTAGGATAATTAATACTAGTGATTTT
1 TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
* * ** * *
457503 TTTTTGCATAAAAATCTTTTATTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAG
66 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
** *
457568 ACAAGCATCGATTCTAATAACAGTCTCCATTATTTCCAAGATTGGGAACCTAAAACACATTTCCT
131 ACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCT
* *
457633 TCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTT
196 TCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTG
* * *
457698 ATAAAATCAAATTTTGTCTCTTAAATAAGACAAATATGAATACTCATACTAATCACCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCACCATTCTTTT
* * * * * *
457763 CAGCAATAGGCACCATAAACATAGTCTTCTAATAAGGATACACGTTATTGATACTTTGATTTCGC
326 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
*
457828 AAGAAAGGTTTTCTTCCCA-CAATTTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAACA
391 AAGAAAGGTTTT-TTCCCACCAA-TTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
457892 TGGATTCTAGCAATGATCTT-T
454 TGGATTCTAGTAATTATCTTCT
* * * * *
457913 ATTCGTTTTATGATTTGGCACTTTAAACACATTCTCCTCATTAGGATAAATGTTATTGATGATTT
1 -TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTT
* * * * **
457978 TCTTTTACAAGGAAATATTTTCTTTGCCCTATTTTGCATAAAATCAAAGTTCATCTTTTAAATAA
65 TCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * ** *
458043 GACAAGCATTGATTCTCGTAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACATGTTCCC
130 GACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC
* * * * * * * *
458108 TTCGTTAGGATACAAGATAATGATGTTTTGGTGTCGCAAGAAAAGCTTTTCATTCCCCCT-TTTT
195 TTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTTCCACTATTTT
* * * * *
458172 TGATAGAATTAAAGTTAGTCTCTTAAATAAGA-AACATATGAATACTCCTACTAATCCCCATT-T
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA-ACATGAATACTCATACTAATCACCATTCT
* * * * *
458235 TTTCAGGATTAGGCACCATAAACATAGCCTTCTAATAAGGATACACGATATTAATGGTTTAGTTT
323 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * *
458300 CGCAAGAAAGGCTTTTTTCCTACCAATTTTTATAATGCCTATGTTCGTGCCTCAAATGAG-CTAA
388 CGCAAGAAAGG-TTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGAC-AA
* * *
458364 ACAAGGATTCTAGTAATAAT-TTTT
451 ACATGGATTCTAGTAATTATCTTCT
* ** * *
458388 ATTCATTTTGTGATTAGGCTGTATAAACACATTCTCCTCATTAGGATAAATGATATTAATGATTT
1 -TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTT
** * * * *
458453 TCTTTCGCATGGAAATCTATTCTTTACCCTGTTTTCCTAAAAATCAAAGTTCATCCCTTAAATAA
65 TCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * *
458518 GACAAGCATCGACTCTCATAATAGTCTCCAATATTTT-AAGATTGGGAACCTAAAACATATTTCC
130 GACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC
* * * ** *
458582 TTCATTAAGATAAATGAAATTGGTGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCATTTTT
195 TTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTT
* * * * * *
458647 AATAGAATCAAAGTTTATCTCTTGAAA-AAGATAAACATGAATACTTATACTAATTACCATTGTT
260 GATAGAATCAAAGTTTGTCTCTT-AAATAAGACAAACATGAATACTCATACTAATCACCATTCTT
*
458711 TTCAGGATTAGGCACCATAAACATAGTCTTCTCATATGGATACACGATATTGATGCTTTGGTTTC
324 TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
* * * * * * *
458776 GCAAGAAAGGGTTTTTTCTCACCAATTTTTGTAAAGTCTAAGTTCATCCCTC-AATAAAGGCAAA
389 GCAAGAAA-GGTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAAT-GAGACAAA
* *
458840 CATGGATTTTAGTAATTATCTTTT
452 CATGGATTCTAGTAATTATCTTCT
* * * * *
458864 TTCATTTTATGATTAGGCACTTTAAGCACATGCACCTCATTAGGATAAATGATACTAACGATTAT
1 TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
* * * * * *
458929 -ATTTGCTTGGAAATCTTTTATCTGCCCTATTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAG
66 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* *
458993 ACAAGCATCGATTCTCGTAACATTCTCCATCATTTT-AAGATTGGGAACCTAAAACACATTTCCT
131 ACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCT
* * **
459057 TCATTCAGATACATGACATTGATACTTTGGTGTCGCAAGAAAA-CATTTTCTTTCCACCGTTTTT
196 TCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTCCACTATTTTT
* *
459121 GATAGAATCAAAGTTTGTCACTTAAATAAGACAAACATGAATACTCATACTATTCACCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCACCATTCTTT
* * * ** *
459186 TCAGGATTAGGCACCATAAACATAGTCTTGTTATAATGATACACGATATTGACACTTTGTTTTCG
325 TCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCG
* *
459251 CAAGAAAGGCTTTTTTTCCCACCATTTTTTGTAATGTCTAAGTTCGTGCCTCAAATGAGACAAAC
390 CAAGAAAGG--TTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
459316 ATAGATTCTAGTAATGATCTT-T
453 ATGGATTCTAGTAATTATCTTCT
* * * * ** *
459338 ATTCATTTTATGATTTGGCATTTTAAGCACATTCTCCTCATTAGGATAAATGATATTGGTCATTT
1 -TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTT
** * * * * **
459403 TCTTTTGTATGGAATTCTTTTCTTGGCCCTATTTTTCTTTAAATCAAAGTTCATCTTTTAAATAA
65 TCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
459468 GACAAGCACCGATTCTCGTAACAGTCTCCATTA-TTTCAAGATTGAGAACCTAAAACACGTTCCC
130 GACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC
* * * * *
459532 TTCATTAGGATACAAGACAATGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTCCACTTTTTTT
195 TTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTT
* * * * *
459597 TATAGAATCAAAGTTAGTCTCTTAAATAAGA-AACACATGAATACTTATACTAATCCCCATTTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAA-ACATGAATACTCATACTAATCACCA-TTCT
* * * * * *
459661 TTTCTGGATTAGGCACCACAAACATAGTCTTCTAATAAGGCTACACGATGTTGATGTTTTGGTTT
323 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * * *
459726 CGCAAAAAAGGCTTTCTTCCTACCAATTTTTATAATGTCTATGTTTGTGCCTCAAATGAGCCAAA
388 CGCAAGAAAGG-TTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * *
459791 CAAGGATTCTAGTAA-TAGTTTTTT
452 CATGGATTCTAGTAATTA-TCTTCT
* ** * *
459815 ATTCATTTTGTGATTAGGCTGTATAAACACATTCTCCTCATTAGGATAAATGGTACTAATGATTT
1 -TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTT
* * *
459880 TCTTTTACATGAAAATCTATTCTTTGCCCTGTTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
65 TCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * *
459945 GACAAGCATCGACTCTCGTAATAGTCTCCATTATTTTCAAGGTTGGGAACCTAAAACATATTTCC
130 GACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC
* * *
460010 TTCATTAAGATACATGGCATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTCTTTCCATCT-TTTT
195 TTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTT
* *
460074 TGATAGAATCAAAGTTTTTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCACCATTCTT
* * * * * * * ** *
460139 TTTAGGATTAGGCACTACAAGCATTGTCTTCTCATTAGGATACGCGATATTGATATTTTTGTTTC
324 TTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTC
** * * *
460204 GCAAGAAAGGCATTTT-CCACCAATTTTTGA-AAAGTCTAAGTTTGTGCCTCAAATGAGACAAAT
389 GCAAGAAAGGTTTTTTCCCACCAATTTTT-ATAATGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * *
460267 ATAGATTCTAGTAATGATCTTCA
453 ATGGATTCTAGTAATTATCTTCT
* * * * * * * * * * *
460290 ATCATTTTGTAATTTGGCACTATAATCACATTTTCCTTATTAGGGTAAATGATATTGATGATTTT
1 TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
*
460355 CTTTTACATGGAAATCTTTTCTTTGCCCTATATTTTCCTTAAAATCAAAGTTCATCCATTAAATA
66 CTTTTACATGGAAATCTTTTCTTTGCCC--TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATA
* * * * * *
460420 AGACAAGCATCGATTCTTGTAATAGTCTCCATTATTTTCAGGATTGGGAACCTAAAATACCTTCC
129 AGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTC
* ** * * * *
460485 CTTTATTTGGACACATGACATTGATGCTTTGGAGTCACAAGAAAAGCTTTTCTCTCCACTGA-TT
194 CTTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT-ATTT
* * * *
460549 TTGATAGAATCAAAGTTTGTCTCTTAAAGACGACAAATATGAATACTCATACTAATTC-CAATTC
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAA-TCACCATTC
** * * ** * *
460613 TTTTCATTATTAGGCACCGTAAACATAATAGTCTCATAAGGATACATGGTATTGA-GCTTTGGTT
322 TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTT
* * * ** * * * *
460677 TTGCAAGAAAAGCTTTCTTCGTACCAATTTTTATAAAGCCTAAGTTCAT-CTCTCAAAGGAGACA
387 TCGCAAG-AAAGGTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGC-CTCAAATGAGACA
* *
460741 AACATTGATTCTAGTAATTATCCTCT
450 AACATGGATTCTAGTAATTATCTTCT
* * * *
460767 TTCATTTTATGATTAGGCACTTTAAAGACATTCGCCTCTTTGGGATAAATGATACTAATG-TTTT
1 TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
* *
460831 -TTTTGA-ATGGAAATCTTTTATTTGCCCTATTTTCCTTAAAATCAAAGTTCAACCCTTAAATAA
66 CTTTT-ACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* *
460894 GACAAGCATCAATTCTCGTAACAG-CTTCCATTACTTTT-AGGATTGGGAACCTAAAACA-ATTT
130 GACAAGCATCGATTCTCGTAACAGTC-TCCATTA-TTTTCAAGATTGGGAACCTAAAACACATTT
* * * * * *
460956 CCTTCATTAGGATACATGACCTTGATGCATTGGTATCGCAAGAAAAGCTTTTCTTTCGAC----C
193 CCTTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTT
* * * * * * *
461017 TTGAT---A-C--A---TGAC-CTT-GAT--G-C--A-TTG-GTA-TC---GTAA-CAGC-TTCC
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCACCATTCT
** *** * ** *
461058 AGT-ACTTTTAGGCACCGTAAACATAGTAGTCTCATCAA-GATACAAGAT-TTAGATGCTTTGGT
323 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT-AAGGATACACGATATT-GATGCTTTGGT
* * ** * * * *
461120 TTCGCAA-AAATGGCTTTTTTCCCCCCAATTTTTATAAAGTCTAAGTTTATCCCTTAAAAGAGGC
386 TTCGCAAGAAA-GG-TTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGAC
* *
461184 AAACATCGATTCCAGTAATTATCTTCT
449 AAACATGGATTCTAGTAATTATCTTCT
** * * *
461211 TTCATTTTATGAGCAGGCACTTTAAACACATTCACCTCATTAGGATAATTAATACTAATGATTTT
1 TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
* * * * * *
461276 TTTTTGCATAGAAATCTTTTATTTGCCCAATTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAG
66 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * *
461341 ACAAGCATCGATTCTCATAATAGTCTCCATTATTTCCAAGATTGGGAACCTAAAGCACATTTCCT
131 ACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCT
* * * * ** *
461406 TCATTAAGATACATGACATTTACGCTTTGGAGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTT
196 TCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTG
* *
461471 ATAGAATCATAGTTTG-----T---TAAGACAAACATGAATACTCATACTAATCACCATTCCTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCACCATTCTTTT
* ** *
461528 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACCACGATATTGATACTTCAGTTTTG
326 CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATA-CACGATATTGATGCTTTGGTTTCG
* *
461593 CAAGAAAGGCTTTTTTCCCA-CAATTTTTCGTAATGTCTAAGTTCATGCCTCAAATGAGACAAAC
390 CAAGAAAGG-TTTTTTCCCACCAATTTTT-ATAATGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
461657 ATGGATTCTAGTAATGATCATT-A
453 ATGGATTCTAGTAATTATC-TTCT
* * * * *
461680 TTCATTTTGTGATTTGGCACTTTAAACACATTCTCCTCCTTAGGATAAATGATATTAACGATTTT
1 TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
* * * **
461745 CTTTTACAAGGAAATATTTTCTTTGCCCTATTTTCCTTAAAATCAAAGCTCATCTTTTAAATAAG
66 CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
* * * * * *
461810 ACAAGCATCGATTCTGGCAACAGTCT--ATTATTTTCAGGATTGGGAACCTAAAACACGTTCCCC
131 ACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCT
* * * * *
461873 TCATTAGGATACAAGATAATGATGCTTTGGTGTCGGAAGAAAAGCTTTTCTTTCCACCT-TTTTT
196 TCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTTT
* * * *
461937 GATAGAATCAAAGTTAGTCTATTAAATAAGA-AACACATGAATACTCATACCAATCCCCATT-TC
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAA-ACATGAATACTCATACTAATCACCATTCT-
* * * *
462000 TTTCAGGATTAGGCACCATAAACATAGTCTTCTAATAAGGATACACGATAATAATGTTTTGGTTT
323 TTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTT
* * * * **
462065 CACAAGAAAGGCTTTCTTCCTACCAA-TTTTATAATGTCTATGTTCGTGCCTCAAATGATCCAAA
388 CGCAAGAAAGG-TTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAA
* *
462129 CAAGGATTCTAGTAA-TAGT-TTTT
452 CATGGATTCTAGTAATTA-TCTTCT
* * ** * *
462152 ATTCATTTTGTGATTACGCTGTATAAACACATTCTCCTCATTAGGATAAATAATACTAATGATTT
1 -TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTT
* * *
462217 TCTTTCACATGGAAATCTATTCTTTGCCTTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
65 TCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA
* * * * *
462282 GACAAGCATCGACT-TCGTAATAGTCTCCCTTATTTTCAAGATTAGGAACCTAAAACATATTTCC
130 GACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCC
462346 TTCATTAAGATACATGA
195 TTCATTAAGATACATGA
462363 TGATGAAAAC
Statistics
Matches: 4118, Mismatches: 693, Indels: 229
0.82 0.14 0.05
Matches are distributed among these distances:
442 5 0.00
443 40 0.01
444 136 0.03
445 8 0.00
446 106 0.03
447 56 0.01
449 2 0.00
450 2 0.00
451 6 0.00
452 1 0.00
454 3 0.00
455 2 0.00
456 2 0.00
457 3 0.00
458 3 0.00
459 4 0.00
460 4 0.00
461 2 0.00
462 3 0.00
464 1 0.00
465 4 0.00
466 3 0.00
467 104 0.03
468 44 0.01
469 206 0.05
470 7 0.00
471 2 0.00
472 64 0.02
473 261 0.06
474 575 0.14
475 1072 0.26
476 870 0.21
477 380 0.09
478 133 0.03
479 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (475 bp):
TTCATTTTATGATTAGGCACTTTAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTT
CTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAG
ACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCAAGATTGGGAACCTAAAACACATTTCCT
TCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCACCATTCTTTT
CAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACGATATTGATGCTTTGGTTTCGC
AAGAAAGGTTTTTTCCCACCAATTTTTATAATGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
GATTCTAGTAATTATCTTCT
Found at i:464006 original size:12 final size:11
Alignment explanation
Indices: 463984--464059 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
463974 AGAGAAAGAA
*
463984 GAGAGAGGAGG
1 GAGATAGGAGG
463995 GATGATAGGAGG
1 GA-GATAGGAGG
*
464007 AGAGACAGGA--
1 -GAGATAGGAGG
*
464017 GAGATAGTA--
1 GAGATAGGAGG
464026 GAGATAGGAGG
1 GAGATAGGAGG
464037 GATGATAGGAGG
1 GA-GATAGGAGG
*
464049 AGAGACAGGAG
1 -GAGATAGGAG
464060 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:464016 original size:24 final size:24
Alignment explanation
Indices: 463983--464068 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
463973 AAGAGAAAGA
*
463983 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
464007 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
464025 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
464049 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
464069 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:464035 original size:42 final size:42
Alignment explanation
Indices: 463974--464092 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
463964 TAGCCCTCAA
* *
463974 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
464016 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
464058 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
464093 TAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:469375 original size:20 final size:21
Alignment explanation
Indices: 469339--469377 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
469329 TTACAAATTT
*
469339 CTTCATTTTTACTTCAAAACA
1 CTTCATTTTTACATCAAAACA
469360 CTTCATTTTT-CATCAAAA
1 CTTCATTTTTACATCAAAA
469378 TCACCAACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.44
Consensus pattern (21 bp):
CTTCATTTTTACATCAAAACA
Found at i:471756 original size:19 final size:19
Alignment explanation
Indices: 471732--471768 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
471722 TGTATCGATG
471732 CATTGTATCGATACATGAT
1 CATTGTATCGATACATGAT
471751 CATTGTATCGATACATGA
1 CATTGTATCGATACATGA
471769 AACTGGCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
CATTGTATCGATACATGAT
Found at i:471821 original size:20 final size:20
Alignment explanation
Indices: 471796--471849 Score: 83
Period size: 20 Copynumber: 2.7 Consensus size: 20
471786 TTACCACTGT
*
471796 TTGTATCGATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
471816 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
471836 TTGTATCGATACAT
1 TTGTATCGATACAT
471850 TGCTTGTAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:474509 original size:468 final size:466
Alignment explanation
Indices: 472831--474625 Score: 1971
Period size: 474 Copynumber: 3.8 Consensus size: 466
472821 TTGATATGCA
* * * * * *
472831 ATATTGATATTTTTGTTTCGCAAGAAAGGCATTT-TT-CCACCAATTTTTATAAAGTCTGAGTTC
1 ATATTGATACTTTGGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTT
* * * ** *
472894 ATGCCTTAAATGAGACAAACATGGATTTTAGTAATTTTCTTC--TCTTTTTTATGATTTA-GCAC
65 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-ATTTTATGA-TTAGGCAC
* * * * *
472956 TTTAAACACATTCGCCTCATTAGGATAAATGATATTGATGA-TTTCTTTTGCGTGGAAATCTTTT
128 TATAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTGCATGGAAATCTTTT
* * * *
473020 CTTTGCCTTATTTTCTTTAAAATCAAAGTTCATCACATAAATAAGACAAGCATCGATTCTCGTAA
193 CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * * ** *
473085 CAGTCTCTACTATTTTCTA-GATTGGAAACCTAAAATACATTCATTTCATCAGGATACATGACAT
258 CAGTCTCCATTATTTTC-AGGATTGGAAACCTAAAACACATTCCCTTCTTCAGGATACATGACAT
*
473149 TGATGCTTTGGTGTCACAAGAAAAGCTTTTTTTCCACC-TATTTTGATAGAATCAAAGTTTGTCT
322 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTCCACCGT-TTTTGATAGAATCAAAG-TT-TCT
* * * *
473213 CTTAAAAAAGAAAAGCATAAATACTCATACTAATCTCCA-TTTTTTCAGGATTAGGCA-TCATAA
384 CTT----TACAAAA--ATGAATACTCATACTAATCACCACTTTTTT-AGGATTAGGCACT-ATAA
473276 ACATAGTCTTCTCATAAGGATACATG
441 ACATAGTCTTCTCATAAGGATACATG
* * * * *
473302 ATATTGATATTTTGTTTTTACACA-AAAGGCTTTCTTCCCACTAATTTTTGTAATGTCTAAGTTT
1 ATATTGATACTTTGGTTTCACA-AGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTT
* * * * **
473366 GTGCCTCAAATGAG-CTAAACAAGGATTCTAGTAATGGTCTTCAATCATTTTGTGATTAGGCTGT
65 GTGCCTCAAATGAGAC-AAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACT
* * * * *
473430 ATAAACAGATTCTCCTCATTAGGATAAATGTTGCAAATGGTTTTCTTTTGCATGGAAATCTTTTC
129 ATAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTGCATGGAAATCTTTTC
** * *
473495 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAATTATCGATTCTCCTTAC
194 TTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
* * * * * *
473560 AGTCTCCATAATTTTTAGGATTGGTAACCTAAAACATATTCCCATTATT-AAGATACATGACATT
259 AGTCTCCATTATTTTCAGGATTGGAAACCTAAAACACATTCCC-TTCTTCAGGATACATGACATT
* *
473624 GATGC-TTGGTGTCACAAAAAAAGCTTTTCTATCCACCGTTTTTGATAAAATCAAAGTTTGTCTC
323 GATGCTTTGGTGTCACAAGAAAAGCTTTTCT-TCCACCGTTTTTGATAGAATCAAAG-TT-TCTC
* * *
473688 TTAAGTAAGACAAACATGAATAC-CATACTAGT-A-CACATTCTATTTAGGATTAGGCACCATAA
385 TT---T---ACAAAAATGAATACTCATACTAATCACCAC-TT-T-TTTAGGATTAGGCACTATAA
*
473750 ACATAGTCTTCTCATATGGATACATG
441 ACATAGTCTTCTCATAAGGATACATG
* * ** **
473776 ATATTAATGCTTTGGCTTT-GTAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTGA
1 ATATTGATACTTTGG-TTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTT
* * * * * *
473840 GTGCCTCAGATGAGCCAAACATGGATTCTAGTAATGATCTTCATTCAATTTGTGATTAGACAGTA
65 GTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTA
* * * * * *
473905 TAAACACATTCTGCTCACTAGGATAAAAGATACTAGTGTTTTTCTTTTACATGGAAATCTTTTCT
130 TAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTGCATGGAAATCTTTTCT
* * * * * *
473970 TTGCCCTATTTTTTCTTAAAATCAAAGTTAATCCCTTAAATAAAATAAGCATCTATTCTCGTAAT
195 TTGCCCTA-TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAAC
474035 AGTCTCCATTATTTTCAGGATTAGG-AACCTAAAACACATTCCCTTCTTCAGGATACATGACATT
259 AGTCTCCATTATTTTCAGGATT-GGAAACCTAAAACACATTCCCTTCTTCAGGATACATGACATT
* *
474099 GATGCTTTGGTGTCGCAAGAAAAGCTTTTACTTCCACCGTTTTTGATAGAATCAAAG-TT-TATT
323 GATGCTTTGGTGTCACAAGAAAAGCTTTT-CTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTT
* * * *
474162 T-CAAAAATGAATACTCACACTAATCACCACTTTTTTAGGATTAGGCACTATAAATATGGGCTTC
387 TACAAAAATGAATACTCATACTAATCACCACTTTTTTAGGATTAGGCACTATAAACATAGTCTTC
*
474226 TCATAAGGATACGTG
452 TCATAAGGATACATG
* ** * *
474241 ATATTGATACTTTGGTTTCACAAGAAAGGCTTTTTTCATACCAATTTTTGTAATGTCTAATTTTG
1 ATATTGATACTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTG
* *
474306 TGCCTCAAATGAGACAAACATGGATTCTACTAGTAATGATCTTTATTCATTTTATGATTTGGCAC
66 TGCCTCAAATGAGACAAACATGGA-T-T-CTAGTAATGATCTTCATTCATTTTATGATTAGGCAC
* * * * *
474371 TTTAAGCACATTCTCCTTAGTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTT
128 TATAAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTGCATGGAAATCTTTT
* * *
474436 CTTTGCCTTACTTTCCTTAAAATCAAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTA
193 CTTTGCCCTATTTTCCTTAAAATC-AAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTA
* * * ** *
474501 ACAGTCTCCATTCTTTTTAGGATT-GAGAACCTAAAACACATTCCCTTTTTTGGGATACCTGACA
257 ACAGTCTCCATTATTTTCAGGATTGGA-AACCTAAAACACATTCCCTTCTTCAGGATACATGACA
* * * * **
474565 TTGATGCTTTGGAGTCACAAGAAAACCTTTTTTTTCCAGCAATTTTGATAGAATCAAAGTT
321 TTGATGCTTTGGTGTCACAAGAAAAGC-TTTTCTTCCACCGTTTTTGATAGAATCAAAGTT
474626 ATGCTTTACT
Statistics
Matches: 1117, Mismatches: 167, Indels: 82
0.82 0.12 0.06
Matches are distributed among these distances:
464 3 0.00
465 124 0.11
466 10 0.01
467 16 0.01
468 233 0.21
469 6 0.01
470 3 0.00
471 29 0.03
472 63 0.06
473 79 0.07
474 385 0.34
475 113 0.10
476 51 0.05
477 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.37
Consensus pattern (466 bp):
ATATTGATACTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTG
TGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTAT
AAACACATTCTCCTCATTAGGATAAATGATACTAATGATTTTCTTTTGCATGGAAATCTTTTCTT
TGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
TCTCCATTATTTTCAGGATTGGAAACCTAAAACACATTCCCTTCTTCAGGATACATGACATTGAT
GCTTTGGTGTCACAAGAAAAGCTTTTCTTCCACCGTTTTTGATAGAATCAAAGTTTCTCTTTACA
AAAATGAATACTCATACTAATCACCACTTTTTTAGGATTAGGCACTATAAACATAGTCTTCTCAT
AAGGATACATG
Found at i:477807 original size:19 final size:21
Alignment explanation
Indices: 477764--477816 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
477754 CACACCTAGA
*
477764 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGTATGCAT
477784 TGTATCGATACATGT-T-CAT
1 TGTATCGATACATGTATGCAT
477803 TGTATCGATACATG
1 TGTATCGATACATG
477817 GACAAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATGTATGCAT
Found at i:477891 original size:20 final size:21
Alignment explanation
Indices: 477866--477921 Score: 80
Period size: 20 Copynumber: 2.8 Consensus size: 21
477856 CTACCACTAT
* *
477866 TTGTATCGATAAATGATAC-A
1 TTGTATCGATACATGAGACAA
477886 TTGTATCGATACATG-GACAA
1 TTGTATCGATACATGAGACAA
477906 TTGTATCGATACATGA
1 TTGTATCGATACATGA
477922 AACTGACAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (21 bp):
TTGTATCGATACATGAGACAA
Found at i:477921 original size:83 final size:84
Alignment explanation
Indices: 477782--477982 Score: 316
Period size: 83 Copynumber: 2.4 Consensus size: 84
477772 TACATTATGC
* *
477782 TTTGTATCGATACATG-TTCATTGTATCGATACATGGACAAATAATATCGATACATGAAACTGGC
1 TTTGTATCGATACATGATACATTGTATCGATACATGGACAAATAATATCGATACATGAAACTGAC
477846 AGTAGCTACCCTACCACTA
66 AGTAGCTACCCTACCACTA
* **
477865 TTTGTATCGATAAATGATACATTGTATCGATACATGGAC-AATTGTATCGATACATGAAACTGAC
1 TTTGTATCGATACATGATACATTGTATCGATACATGGACAAATAATATCGATACATGAAACTGAC
*
477929 AGTAGCTACCCTACCACTG
66 AGTAGCTACCCTACCACTA
* *
477948 TTTGTATCGATACATTATACATTGTATCCATACAT
1 TTTGTATCGATACATGATACATTGTATCGATACAT
477983 TGTATCGATA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
83 87 0.81
84 21 0.19
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32
Consensus pattern (84 bp):
TTTGTATCGATACATGATACATTGTATCGATACATGGACAAATAATATCGATACATGAAACTGAC
AGTAGCTACCCTACCACTA
Found at i:477982 original size:13 final size:13
Alignment explanation
Indices: 477964--477995 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
477954 TCGATACATT
477964 ATACATTGTATCC
1 ATACATTGTATCC
*
477977 ATACATTGTATCG
1 ATACATTGTATCC
477990 ATACAT
1 ATACAT
477996 GATGAATTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (13 bp):
ATACATTGTATCC
Found at i:478512 original size:9 final size:9
Alignment explanation
Indices: 478498--478522 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
478488 CTTTAAAAGA
478498 TAAGGTTTG
1 TAAGGTTTG
478507 TAAGGTTTG
1 TAAGGTTTG
478516 TAAGGTT
1 TAAGGTT
478523 ATATCTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (9 bp):
TAAGGTTTG
Found at i:479629 original size:9 final size:9
Alignment explanation
Indices: 479611--479654 Score: 72
Period size: 9 Copynumber: 4.9 Consensus size: 9
479601 AGTCAACTAT
479611 TAATGATGA
1 TAATGATGA
479620 TGAA-GATGA
1 T-AATGATGA
479629 TAATGATGA
1 TAATGATGA
479638 TAATGATGA
1 TAATGATGA
479647 TAATGATG
1 TAATGATG
479655 GTGACTCGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
8 2 0.06
9 29 0.88
10 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.25, T:0.32
Consensus pattern (9 bp):
TAATGATGA
Found at i:483676 original size:42 final size:42
Alignment explanation
Indices: 483623--483732 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
483613 AAGAGAAAGA
*
483623 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
* *
483665 AGTGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
483707 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
483733 GAGAGAAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.40, C:0.03, G:0.47, T:0.10
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:488268 original size:51 final size:50
Alignment explanation
Indices: 488151--488268 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 50
488141 GATAACAATG
** *
488151 GGGTTGGAGTATCCTTGATTGTGAAAAATTGATGTTTTGAAAATAAAATC
1 GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACC
* * *
488201 GGAGTTAGAGTTTCCCCGATTGTGGAAAATTGATGTTTT-AGAAATAAAACC
1 GG-GTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGA-AAATAAAACC
488252 GAGGTTGGAGTATCCCC
1 G-GGTTGGAGTATCCCC
488269 TTGGAAATAA
Statistics
Matches: 57, Mismatches: 8, Indels: 5
0.81 0.11 0.07
Matches are distributed among these distances:
50 3 0.05
51 53 0.93
52 1 0.02
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.32
Consensus pattern (50 bp):
GGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACC
Found at i:488342 original size:51 final size:51
Alignment explanation
Indices: 488279--488396 Score: 191
Period size: 51 Copynumber: 2.3 Consensus size: 51
488269 TTGGAAATAA
* *
488279 CGGGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAAC
* * *
488330 CGGGGTTGGAGTATCTCCGATTGTGGAAAATTGATGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAAC
488381 CGGGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
488397 ACTTGGAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATGGTGGAAAATCGATGTTTTAGAAATAAAAC
Found at i:488413 original size:79 final size:78
Alignment explanation
Indices: 488330--488537 Score: 274
Period size: 79 Copynumber: 2.6 Consensus size: 78
488320 GAAATAAAAC
* * **
488330 CGGGGTTGGAGTATCTCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATC-CCGATTGTGAAAAATTGATGTTTTAAAAATAAAACCAAGGTTGGAGTAT
*
488395 CCACTTGGAAATAA
65 CCACTCGGAAATAA
* *
488409 CGGGGTTGGAGTATCCTCGATTATGAAAAATT-AGTGTTTTAAAAATAAAACTAAGGTTGGAGTA
1 CGGGGTTGGAGTATCC-CGATTGTGAAAAATTGA-TGTTTTAAAAATAAAACCAAGGTTGGAGTA
*
488473 TCCCCTCGGAAATAA
64 TCCACTCGGAAATAA
* * *
488488 CGGGGTGGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTAAAAATAAAA
1 CGGGGTTGGAGTAT-CCCGATTGTGAAAAATTGATGTTTTAAAAATAAAA
488538 ACATGAATGA
Statistics
Matches: 113, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
78 2 0.02
79 109 0.96
80 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.29
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCGATTGTGAAAAATTGATGTTTTAAAAATAAAACCAAGGTTGGAGTATC
CACTCGGAAATAA
Found at i:488467 original size:130 final size:130
Alignment explanation
Indices: 488150--488477 Score: 462
Period size: 130 Copynumber: 2.5 Consensus size: 130
488140 AGATAACAAT
* * * *
488150 GGGGTTGGAGTATCCTTGATTGTGAAAAATTGATGTTTTGAAAATAAAA-TCGGAGTTAGAGTTT
1 GGGGTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACTAGG-GTTGGAGTAT
*
488214 CCCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTTGGAAATAA
65 CCCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCACTTGGAAATAA
488279 C
130 C
* * * * * * **
488280 GGGGTTAGAGTATCCCCGATGGTGGAAAATCGATGTTTTGGAAATAAAACCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACTAGGGTTGGAGTATC
* *
488345 TCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCACTTGGAAATAAC
66 CCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCACTTGGAAATAAC
* * *
488410 GGGGTTGGAGTATCCTCGATTATGAAAAATT-AGTGTTTTAAAAATAAAACTAAGGTTGGAGTAT
1 GGGGTTGGAGTATCCTCGATTGTGAAAAATTGA-TGTTTTGAAAATAAAACTAGGGTTGGAGTAT
488474 CCCC
65 CCCC
488478 TCGGAAATAA
Statistics
Matches: 170, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
129 1 0.01
130 167 0.98
131 2 0.01
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (130 bp):
GGGGTTGGAGTATCCTCGATTGTGAAAAATTGATGTTTTGAAAATAAAACTAGGGTTGGAGTATC
CCCGATTGTGGAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTATCCACTTGGAAATAAC
Found at i:490937 original size:13 final size:13
Alignment explanation
Indices: 490919--490943 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
490909 AAACCCATAA
490919 TGTATCGATACAT
1 TGTATCGATACAT
490932 TGTATCGATACA
1 TGTATCGATACA
490944 ATGAATAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Done.