Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1571
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 244772
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
File 1 of 2
Found at i:682 original size:159 final size:157
Alignment explanation
Indices: 36--682 Score: 357
Period size: 159 Copynumber: 4.1 Consensus size: 157
26 GTAGCCAGTA
* * *
36 AAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATC
1 AAAGAATGGGGATTAGTATGAG-ATTCTTGTTTGTCTCATTTTAGAGACAAACTTTGATTCTAAC
* * *
101 AATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGAA
65 AATAACGGTAGGAAGAAAAGCTTCTCTTGCGA-ACCAAAGCATTAATATCTTGTATCCTAATGAA
* * **
166 AGGAATGTGTTTTTGTTTCCCAATCTTTT
129 AGGAATGTGTTTTTGGTGCCCAATCTTGG
* * * * * ** * * *
195 CAAGATTAGGGACGTT--TATGAGAATCAATGCATGTGTCA-TTTAAAGTACAAACTTTGATTTT
1 AAAGAATGGGGA--TTAGTATGAGATTC-TTGTTTGTCTCATTTTAGAG-ACAAACTTTGATTCT
* * * * * * ** * *
257 AAGGAAAATAA-GGCA--AAGAAAAGATT-TCCATACAAAAAAAAACCATAAATATCATT-TATC
62 -A--ACAATAACGGTAGGAAGAAAAGCTTCT-CTTGC-GAACCAAAGCATTAATATC-TTGTATC
* * *
317 CTAATG-AGGAGAATGTGTTTGTGGTGCCTAAT-TAT-G
121 CTAATGAAAG-GAATGTGTTTTTGGTGCCCAATCT-TGG
** * *
353 AAATGAATGAAGATCCTTGCTA-GA-A-TCTATGTTTGTCTCATTTGAG-GA-ATGAACTTAT-A
1 AAA-GAATGGGGAT--TAG-TATGAGATTCT-TGTTTGTCTCATTTTAGAGACA--AACTT-TGA
* * * * * * *
412 CTT-T-ACAAAAATAGGTGGGAAG-AAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTAT
58 -TTCTAACAATAA-CGGTAGGAAGAAAAGCTTCTCTTGCG-AACCAAAGCATTAATATCTTGTAT
* * * * * * *
474 TCTTATGAGAA--AACTATGTTTATGGTGCCTAATCCTGA
120 CCTAATGA-AAGGAA-TGTGTTTTTGGTGCCCAATCTTGG
* *
512 AAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAAC
1 AAAGAATGGGGATTAGTATGAG-ATTCTTGTTTGTCTCATTTTAGAGACAAACTTTGATTCTAAC
* * *
577 AATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCCTAATGAA
65 AATAACGGTAGGAAGAAAAGCTTCTCTTGCGAACC-AAAGCATTAATATCTTGTATCCTAATGAA
*
642 AGGAATGTGTTTTTGGTTCCCAATCTTGG
129 AGGAATGTGTTTTTGGTGCCCAATCTTGG
*
671 AAAGATTGGGGA
1 AAAGAATGGGGA
683 CTTTTACTAG
Statistics
Matches: 349, Mismatches: 90, Indels: 98
0.65 0.17 0.18
Matches are distributed among these distances:
155 7 0.02
156 4 0.01
157 10 0.03
158 107 0.31
159 192 0.55
160 15 0.04
161 7 0.02
162 7 0.02
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (157 bp):
AAAGAATGGGGATTAGTATGAGATTCTTGTTTGTCTCATTTTAGAGACAAACTTTGATTCTAACA
ATAACGGTAGGAAGAAAAGCTTCTCTTGCGAACCAAAGCATTAATATCTTGTATCCTAATGAAAG
GAATGTGTTTTTGGTGCCCAATCTTGG
Found at i:927 original size:476 final size:476
Alignment explanation
Indices: 35--14891 Score: 21104
Period size: 476 Copynumber: 30.9 Consensus size: 476
25 AGTAGCCAGT
*
35 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
100 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* ** * *
165 AAGGAATGTGTTTTTGTTTCCCAATCTTTTCAAGATTAGGGACGTTTA-TGAGAATCAATGCATG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* *
229 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * * *
294 AAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTGTGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* * *
359 ATGAAGATCCTTGCTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
*
424 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATTCTTATGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
489 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
* *
511 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAA
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
576 CAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
*
641 AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
* *
706 CTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAA
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
771 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
836 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * *
900 TGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
965 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
** * * *
987 AAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
1052 CAATAACGGTAGAAAGAAAGGCTTCTTTTGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * *
1117 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
1182 CTCATTTAAAGTACAAACTTTGATTTTAATG-AAAATAAGGCAAAGAAAAGATTTCCATACAAAA
196 CTCATTTAAAGTACAAACTTTGATTTTAA-GAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * *
1246 GAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGATTATAGTGCCTAATCACGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* * *
1311 ATGAAGATCCTTACTAGAATCCACGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
* * *
1376 AGGTGGGAAGAAAGCGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAAT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
* *
1441 ATGTTTATGGTGCCTAACCCTA
455 ATGTTTATGGTGCCTAATCCTG
* * *
1463 AAAAGAAAGGGGATTAGTATTAGTATTCTTGTTTGTTTTATTTAAAAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
1528 CAATAACGGTAGAAAGAAAGGCTTCCCCTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * ** * * *** * * ** * * *
1593 AATCCCAAAGCATTAATGTCTTGTATCCTAATGAAATGAATGTGTTTTTGGTTCCCAATATTGAA
131 AA--GGAATGTGTT--T-T-TGGT-TCCCAAT-CTTTGAA--AG--ATTGG---GGACT-TTTAC
* * ** * * ***
1658 AAGATTGGGGACTTTTACGA-GAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTTTAAG
180 TAGAAT-----C-AATGC-ATG--TC--T-C-A-T-TTAAAG----TACAAACTTTGATTTTAAG
* * * *
1722 AAAAATAAGGCAAAGAAAAGATTTCCTTACAAAGGAAAACAATAAATCTCATTTATCCTAATGAG
226 AAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAG
* * * *
1787 GAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTC
291 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
1852 TCATTTGAGGAATGAACTTATACTTT-GCAAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAACC
356 TCATTTGAGGAATGAACTTATACTTTAG-AAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAACC
1916 AAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTG
420 AAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTG
*
1973 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
2038 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* ** * *
2103 ATGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGCGACTTTTA-TGAGAATCAATGCATG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* *
2167 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * *
2232 -AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* *
2296 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
*
2361 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTACGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
2426 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
*
2448 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
2513 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTACTGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * *
2578 AAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTTA-TGAGAATCAATGCTTG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* *
2642 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * *
2707 -AAAACCATAAATATCATTTATCCTTATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* *
2771 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
* * * *
2836 AGGTGGGAAGAAAGCGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATAAGAAAAAT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
* *
2901 ATGTTTATGGTGCCTAACCCTA
455 ATGTTTATGGTGCCTAATCCTG
*
2923 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
2988 CAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCTTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* * *
3053 AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGAGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
*
3118 CTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
3183 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
3248 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * * *
3312 TGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
3377 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
** * * * *
3399 AAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAAGTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
3464 CAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * * * *
3529 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAAATTAGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
* *
3594 CTCATTTAAAGTAGAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
* *
3659 AAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* * * * * *
3724 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAGAAATT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATA
* * * * * * *
3789 GGTGGGAAGAAAGTGTTTCCTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTA
391 GGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTA
*
3854 TGTTTATGCTGCCTAATCCTG
456 TGTTTATGGTGCCTAATCCTG
* * *
3875 AAAAGATTAA--GGATTAGTATGAGTATTTTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCT
1 AAAAGA--AAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
*
3938 ATCAGTAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAAT
64 ATCAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAAT
** * ** * * *** * * ** * *
4003 GAAATCCCAAAGCATTAATGTCTTGTATCCTAATGAAATGAATGTGTTTTTGGTTCCCAATATTG
129 GAAA--GGAATGTGTT--T-T-TGGT-TCCCAAT-CTTTGAA--AG--ATTGG---GGACT-TTT
** * ** * * ***
4068 AAAAGATTGGGGACTTTTACGA-GAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTTTA
178 ACTAGAAT-----C-AATGC-ATG--TC--T-C-A-T-TTAAAG----TACAAACTTTGATTTTA
* *
4132 AGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAAAAAACCATAAATATAATTTATCCTAATG
224 AGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATG
4197 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
289 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
* * * * * *
4262 TCACTTTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAGAAAGCGTATGTTGCAAAAT
354 TCTCATTTGAGGAATGAACTTATACTTTAGAAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAAC
* * * *
4327 GAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTA
419 CAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTG
* *
4385 AAAAGAAAGGGGATTAGTATTAGTATTCTTGTTTGTCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
4450 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* * * *
4515 AATGAATGTGTTTTTGGTTCCCAAT-ATTGAAAAGATTGGGGACTTTTACGAGAATCAATGCAAG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACTAGAATCAATGCATG
* *
4579 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCTTACAAAG
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * * *
4644 GAAAACAATAAATCTCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
*
4709 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTT-GCAAAAA
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAG-AAAAA
4773 TAGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAC
389 TAGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAC
4838 TATGTTTATGGTGCCTAATCCTG
454 TATGTTTATGGTGCCTAATCCTG
*
4861 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
4926 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGCAGCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* * ** * *
4991 ATGGAATGTGTTTTTGGTTCCCAAGCTTTTCAAGATTAGCGACTTTTA-TGAGAATCAATGCATG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* *
5055 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * * *
5120 AAAAACCATAAATATCATTTATCGTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* * *
5185 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATAAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
5250 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
5315 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
*
5337 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
5402 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* ** * *
5467 AAGGAATGCGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACGTTTA-TGAGAATCAATGCATG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* *
5531 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * * *
5596 AAAAACCATAAATATCATTTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* * *
5661 ATGAAGATCCTTACTAGAATCTATGTTGGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
5726 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
5791 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
*
5813 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
5878 CAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCTTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* *
5943 AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
*
6008 CTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
6073 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
6138 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * * *
6202 TGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
6267 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
** * * * *
6289 AAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAAGTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
6354 CAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * * *
6419 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTAGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
*
6484 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
* *
6549 AAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* * * * * *
6614 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTAGAGAAATT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATA
* * * * * * *
6679 GGTGGGAAGAAAGTGTTTCCTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTA
391 GGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTA
*
6744 TGTTTATGCTGCCTAATCCTG
456 TGTTTATGGTGCCTAATCCTG
** * * * *
6765 AAAAGATTGAGGATTAGTATGAGTATTTTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
6830 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * ** * * *** * * ** * * *
6895 AATCCCAAAGCATTAATGTCTTGTATCCTAATGAAATGAATGTGTTTTTGGTTCCCAATATTGAA
131 AA--GGAATGTGTT--T-T-TGGT-TCCCAAT-CTTTGAA--AG--ATTGG---GGACT-TTTAC
* * ** * * ***
6960 AAGATTGGGGACTTTTACGA-GAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTTTAAG
180 TAGAAT-----C-AATGC-ATG--TC--T-C-A-T-TTAAAG----TACAAACTTTGATTTTAAG
* * * *
7024 AAAAATAAGGCAAAGAAAAGATTTCCTTACAAAGGAAAACAATAAATCTCATTTATCCTAATGAG
226 AAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAG
* * * *
7089 GAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTC
291 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
7154 TCATTTGAGGAATGAACTTATACTTT-GCAAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAACC
356 TCATTTGAGGAATGAACTTATACTTTAG-AAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAACC
* * *
7218 AAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTA
420 AAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTG
* *
7275 AAAAGAAAGGGGATTAGTATTAGTATTCTTGTTTGTCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
7340 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* * * * *
7405 AATGAATGTGTTTTTGGTTCCCAAT-ATTGAAAAGATTGGGGACTTTTACGAGAATCAATACAAG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACTAGAATCAATGCATG
* * *
7469 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCTTCCAAAG
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * * *
7534 GAAAACAATAAATCTCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* *
7599 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
7664 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
7729 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
* *
7751 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAA
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
7816 CAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
*
7881 AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
* * *
7946 CTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTTCATACAAAAA
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
8011 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
8076 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * * *
8140 TGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
8205 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
* ** * * *
8227 AAAGGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
8292 CAATAACGGTAGAAAGAAAGGCTTCTTTTGAGACCCCAAAGCATTAAAGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * *
8357 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
*
8422 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
* * *
8487 AAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGATTATAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* * * * *
8552 TGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAGAATTTAGAGAAATT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATA
* * * * * * *
8617 GGTGGGAAGAAAGTGTTTCCTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTA
391 GGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTA
*
8682 TGTTTATGCTGCCTAATCCTG
456 TGTTTATGGTGCCTAATCCTG
** * * * *
8703 AAAAGATTGAGGATTAGTATGAGTATTTTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
8768 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * ** * * *** * * ** * * *
8833 AATCCCAAAGCATTAATGTCTTGTATCCTAATGAAATGAATGTGTTTTTGGTTCCCAATATTGAA
131 AA--GGAATGTGTT--T-T-TGGT-TCCCAAT-CTTTGAA--AG--ATTGG---GGACT-TTTAC
* * ** * * ***
8898 AAGATTGGGGACTTTTACGA-GAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTTTAAG
180 TAGAAT-----C-AATGC-ATG--TC--T-C-A-T-TTAAAG----TACAAACTTTGATTTTAAG
* * * *
8962 AAAAATAAGGCAAAGAAAAGATTTCCTTACAAAGGAAAACAATAAATCTCATTTATCCTAATGAG
226 AAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAG
* * * *
9027 GAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTC
291 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
9092 TCATTTGAGGAATGAACTTATACTTT-GCAAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAACC
356 TCATTTGAGGAATGAACTTATACTTTAG-AAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAACC
* * *
9156 AAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTA
420 AAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTG
* *
9213 AAAAGAAAGGGGATTAGTATTAGTATTCTTGTTTGTCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
9278 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* * * * *
9343 AATGAATGTGTTTTTGGTTCCCAAT-ATTGAAAAGATTGGGGACTTTTACGAGAATCAATACAAG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACTAGAATCAATGCATG
* * *
9407 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCTTCCAAAG
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * * *
9472 GAAAACAATAAATCTCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* *
9537 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
9602 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
9667 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
* *
9689 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAA
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
9754 CAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
*
9819 AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
*
9884 CTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTT-CATACAAAA-
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
9947 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
10012 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * * *
10076 TGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
10141 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
* ** * * *
10163 AAAGGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
10228 CAATAACGGTAGAAAGAAAGGCTTCT-TTGAGACCCCAAAGCATTAAAGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * *
10292 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
*
10357 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
* * *
10422 AAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGATTATAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
10487 TGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAATA
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATA
* * *
10552 GGTGGGAAGAAAGCGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAATA
391 GGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTA
* *
10617 TGTTTATGGTGCCTAACCCTA
456 TGTTTATGGTGCCTAATCCTG
* * *
10638 AAAAGAAAGGGGATTAGTATTAGTATTCTTGTTTGTTTTATTTAAAAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * *
10703 CAATAACGGTAGAAAGAAAGGCTTCCCTTGCGACCCGAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** *
10768 AAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTTA-TGAGAATCAATGCATG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* *
10832 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * *
10897 -AAAACCATAAATATCATTTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* * *
10961 ATGAAGATCCTTACTAGAATCTATGTTGGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
11026 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
11091 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
*
11113 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
11178 CAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* *
11243 AAGGAATGTGTTTTTGGTTCCAAATCTTGGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
* *
11308 CTCATTTAAATTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
11373 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
11438 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * * *
11502 TGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
11567 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
** * * * *
11589 AAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTATGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
11654 CAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * *
11719 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
*
11784 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
* * *
11849 AAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGATTATAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
11914 TGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAATA
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATA
* * * *
11979 GGTGGGAAGAAAACGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAATA
391 GGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTA
* *
12044 TGTTTATGGTGCCTAACCCTA
456 TGTTTATGGTGCCTAATCCTG
* * *
12065 AAAAGAAAGGGGATTAGTATTAGTATTCTTGTTTGTCTTATTTAAAAGGCAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * * * *
12130 CAATAACGGTAGAAAGAAAGGCTTCCCTTGCGACCCGAAAGCATTACTGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** *
12195 AAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTTA-TGAGAATCAATGCATG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* * *
12259 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATAGAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * * *
12324 AAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGGCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* *
12389 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
*
12454 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTACGAGAAAACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
12519 ATGTTTATGGTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
*
12541 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
12606 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* *** * *
12671 AAGGAATGTGTTTTTGGTTCCCAATATTTTCGAGATTAGGGACTTTTA-TGAGAATCAATGCTTG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACT-AGAATCAATGCATG
* *
12735 TGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * * *
12800 -AAAACCATAAATATCATTTATCCTTATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGA
260 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
* *
12864 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
325 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAAT
* * * *
12929 AGGTGGGAAGAAAGCATATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAAT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
* *
12994 ATGTTTATGGTGCCTAACCCTA
455 ATGTTTATGGTGCCTAATCCTG
*
13016 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
13081 CAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCAATAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* *
13146 AAGGAATGTGTTTTTGGTTCCAAATCTTGGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
* *
13211 CTCATTTAAATTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
13276 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
13341 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * * *
13405 TGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
13470 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
** * * * * *
13492 AAAAGATTGGGGATTAGAATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTATGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
13557 CAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGC----ATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * *
13618 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
* *
13683 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGAAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
*
13748 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* *
13813 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAAT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAAT
* * * * * * *
13877 TGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACT
390 AGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACT
*
13942 ATGTTTATGCTGCCTAATCCTG
455 ATGTTTATGGTGCCTAATCCTG
** * * *
13964 AAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
14029 CAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * * * *
14094 AAGGAATAAGGTTTTGGTTCCCAAT-ATTGAAAATATTGGGGACTTTTACGAGAATCAATGCATG
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACTAGAATCAATGCATG
14158 TCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAATAAGGCAAAGAAAAGATTTCCATACAAA
195 TCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAAATAAGGCAAAGAAAAGATTTCCATACAAA
* * * * * *
14223 AAAAAACCCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTATGGTGCCTAATTATGAAAT
259 AGAAAA-CCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAAT
* *
14288 GAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAA
323 GAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAA
* * *
14353 ATAGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGA
388 ATAGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAA
*
14418 CTATGTTTATGCTGCCTAATCCTG
453 CTATGTTTATGGTGCCTAATCCTG
** * * * * *
14442 AAAAGATTGGGGATTAGAATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTATGATTCTAT
1 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* *
14507 CAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
66 CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
** * *
14572 AAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGT
131 AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
* *
14637 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGAAAAGAAAAGATTTCCATACAAAAG
196 CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
* * * *
14702 AAAACCATAAATATAATTTATCCTCACGAGAAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
261 AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
* * * * * *
14767 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTAGAGAAATT
326 TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATA
** * * * *
14832 GGTGGGAAGAAATTGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAA
391 GGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA
14892 GACTTTGATT
Statistics
Matches: 13087, Mismatches: 1093, Indels: 402
0.90 0.07 0.03
Matches are distributed among these distances:
472 460 0.04
473 147 0.01
474 287 0.02
475 2097 0.16
476 7747 0.59
477 96 0.01
478 423 0.03
479 3 0.00
480 12 0.00
481 8 0.00
482 16 0.00
483 28 0.00
484 20 0.00
486 10 0.00
487 4 0.00
488 28 0.00
489 4 0.00
491 8 0.00
492 28 0.00
494 28 0.00
495 9 0.00
497 4 0.00
498 27 0.00
499 4 0.00
500 12 0.00
501 9 0.00
502 12 0.00
503 28 0.00
504 16 0.00
505 8 0.00
506 12 0.00
508 22 0.00
509 3 0.00
510 1467 0.11
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
CAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
AAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACTAGAATCAATGCATGT
CTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
TGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATA
GGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTA
TGTTTATGGTGCCTAATCCTG
Found at i:1605 original size:34 final size:34
Alignment explanation
Indices: 1562--1629 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
1552 CCCCTGTGAC
1562 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1596 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1630 GAATGTGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (34 bp):
CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
Found at i:1965 original size:158 final size:158
Alignment explanation
Indices: 1770--2917 Score: 539
Period size: 158 Copynumber: 7.2 Consensus size: 158
1760 ACAATAAATC
* * *
1770 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTAC
1 TCATGTATCCTTATGA-GAAAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTA-
1835 T-AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTGCAAAAATAGGTGGGAAG-AA
64 TGAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTGCAAAAATAGGTGGGAAGAAA
1898 AGCGTATCTTGCGAAACCAAAGCATCAATA
129 AGCGTATCTTGCGAAACCAAAGCATCAATA
* ** * * ** ***
1928 TCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTAT
1 TCATGTATCCTTATGAGAAAA-TGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTAT
* * * * * * * *
1993 GAGTATTCT-TGTTTGTCTTATTTTAGAGACA--AACTTTGATTCTAT-CAATAA-CGGTAGGAA
65 GAG-AATCTATGTTTGTCTCATTTGAG-GA-ATGAAC-TT-ATACTTTGCAAAAATAGGTGGGAA
* * ** * * *
2053 GAAAAGCTTCTCTTGCGACCCCAAAGTATTAATG
125 GAAAAGCGTATCTTGCGAAACCAAAGCATCAATA
* * * * * * * ** * * *
2087 TCTTGTATCCTAATGA-ATGGAATGTGTTTTTGGTTCCCAATCTTTTCAA-G-ATTAGCGA-CTT
1 TCATGTATCCTTATGAGA--AAATGTGTTTATGGTGCCTAAT-TATGAAATGAATGA-AGATC-C
* ** * * * * ** * * * **
2148 TTATGAGAATCAATGCATGTGTCATTTAAAGTACAAACTT-TGATTTTAAG-GAAAATAAG-GCA
61 TTATGAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTT--GCAAAAATAGGTGGG
* * * * ** * *
2210 AAGAAAAG-ATTTCCATAC-AAAAAAAACCATAAATA
123 AAGAAAAGCGTAT-CTTGCGAAACCAAAGCATCAATA
* * *
2245 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTAC
1 TCATGTATCCTTATGA-GAAAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTA-
*
2310 T-AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAG-AA
64 TGAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTGCAAAAATAGGTGGGAAGAAA
2373 AGCGTATCTTGCGAAACCAAAGCATCAATA
129 AGCGTATCTTGCGAAACCAAAGCATCAATA
* * ** * * ** ***
2403 TCATGTATCCTTACGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTAT
1 TCATGTATCCTTATGAGAAAA-TGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTAT
* * * * * * * *
2468 GAGTATTCT-TGTTTGTCTTATTTTAGAGACA--AACTTTGATTCTAT-CAATAA-CGGTAGGAA
65 GAG-AATCTATGTTTGTCTCATTTGAG-GA-ATGAAC-TT-ATACTTTGCAAAAATAGGTGGGAA
* * ** * * *
2528 GAAAAGCTTCTCTTGCGACCCCAAAGTATTAATG
125 GAAAAGCGTATCTTGCGAAACCAAAGCATCAATA
* * * * * ** * *
2562 TCTTGTATCC-TACTGA-AAGGAATGTGTTTTTGGTTCCCAATCTTTTCAA-G-ATTAGGGA-CT
1 TCATGTATCCTTA-TGAGAA--AATGTGTTTATGGTGCCTAAT-TATGAAATGAATGA-AGATC-
* * * * * * * ** * * * *
2622 TTTATGAGAATCAATGCTTGTGTCATTTAAAGTACAAACTT-TGATTTTAAG-GAAAATAAG-GC
60 CTTATGAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTT--GCAAAAATAGGTGG
* * * * * ** * *
2684 AAAGAAAAG-ATTTCCATAC-AAAAAAAACCATAAATA
122 GAAGAAAAGCGTAT-CTTGCGAAACCAAAGCATCAATA
* *
2720 TCATTTATCCTTATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTAC
1 TCATGTATCCTTATGA-GAAAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTA-
*
2785 T-AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAG-AA
64 TGAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTGCAAAAATAGGTGGGAAGAAA
* *
2848 AGCGTATCTTGCAAAACGAAAGCATCAATA
129 AGCGTATCTTGCGAAACCAAAGCATCAATA
* *
2878 TCATGTATCCTTATAAGAAAAATATGTTTATGGTGCCTAA
1 TCATGTATCCTTATGAG-AAAATGTGTTTATGGTGCCTAA
2918 CCCTAAAAAG
Statistics
Matches: 697, Mismatches: 224, Indels: 138
0.66 0.21 0.13
Matches are distributed among these distances:
156 2 0.00
157 53 0.08
158 395 0.57
159 221 0.32
160 26 0.04
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (158 bp):
TCATGTATCCTTATGAGAAAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTATG
AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTGCAAAAATAGGTGGGAAGAAAAG
CGTATCTTGCGAAACCAAAGCATCAATA
Found at i:2956 original size:158 final size:158
Alignment explanation
Indices: 1836--13058 Score: 855
Period size: 159 Copynumber: 70.1 Consensus size: 158
1826 GATCCTTACT
*
1836 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
1899 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
1964 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
1994 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * ** * *
2055 AAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGA-ATGGAATGTGTTTTTG
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AAAATATGTTTATG
* * * *** * * *
2119 GTTCCCAATCTTTTCAAGATTA-GCGACTT-TTATG
125 GTGCCTAATCCTGAAAAGA-AAGGGGA-TTAGTATG
* ** * * * * ** * * **
2153 AGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * * * * * * * * *
2216 AG-ATTTCCATACAAAA-AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
2279 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
2311 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* * *
2374 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTACGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
2439 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
2469 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * * *
2530 AAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCC-TACTGA-AAGGAATGTGTTTTT
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTA-TGAGAA-AAATATGTTTAT
* * * *** * *
2593 GGTTCCCAATCTTTTCAAGATTA-GGGACTT-TTATG
124 GGTGCCTAATCCTGAAAAGA-AAGGGGA-TTAGTATG
* * * * * * ** * * **
2628 AGAATCAATGCTTGTGTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * * * * * * * *
2691 AG-ATTTCCATACAAAA-AAAACCATAAATATCATTTATCCTTATGAGGAGAATGTGTTTATGGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
2754 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
2786 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
2849 GCGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATAAGAAAAATATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* *
2914 CTAACCCTAAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
2944 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** * * * * * * *
3005 AAAGCTTCTCTTG-TGACCCTAAAGCATTAATGTCTTGTAT-CTTAATGA-AAGGAATGTGTTTT
61 AAAGCGTATCTTGCAAAACC-AAAGCATCAATATCATGTATCCTT-ATGAGAA-AAATATGTTTA
* * * * ** * * *
3067 TGGTTCCCAATCTTGGAAAGATTGGAGACTT-TTACG
123 TGGTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTATG
* ** * * * ** * * **
3103 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTAC-AAAAATAGGTGGGAAGAAAA
* * * * ** * * * * * * * **
3167 G-ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG
64 GCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTG
* * ** ***
3231 CCTAATCAC-GAAATGAATGAAGATCCTTACT-
128 CCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* ** * * *
3262 AGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGGAAG-AAA
1 AGAAT-CTTGTTTGTCTCATTTGAGG-AATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAA
* * * * * * * * *
3325 GTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTATGCTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
**
3390 CTAATCCTGAAAAGATTGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * * *
3420 AGTATTCATGTTTGCCTTATTTAAGTGACA--AAGTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * *
3481 AAGGCTTCTCTTG-AGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAGGTTT-
61 AAAGCGTATCTTGCA-AAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAAT-ATGTTTA
* * * * * *
3543 TGGTTCCCAATCTTTGAAAA-ATTA-GGGACTT-TTACG
123 TGGTGCCTAATC-CTGAAAAGA-AAGGGGA-TTAGTATG
* ** * * * * * **
3579 AGAATCAATGCATGTCTCATTTAAAGTA-GAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATG-AACTTTGACTTTACA--AAAATAGGTGGGAAGAA
* * * * ** * * * * * * * * * *
3641 AAG-ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTATAG
62 AAGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGG
* * ** ***
3705 TGCCTAATCAC-GAAATGAATGAAGATCCTTACT-
126 TGCCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* * * * * * * *
3738 AGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAGAAATTGGTGGGAAG-AAAG
1 AGAAT-CTTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAAG
* * * * * * * * * *
3802 TGTTTCCTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTATGTTTATGCTGCC
65 CGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCC
3867 TAATCCTGAAAAGATTAA--GGATTAGTATG
130 TAATCCTGAAAAGA--AAGGGGATTAGTATG
* * * * * ** * * *
3896 AGTATTTTTGTTTGCCTTATTTAAGTGACA--AACTTTGA-TTCTATCAGTAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** ** * * * * *
3957 AAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAATCCCAAAGCATTAAT
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGA----AAA--A-T-AT
* * * * *
4022 GTCT-T-GTATCCTAA---TGAAATGAATGTGTTTTTGG-TTCCCAATATTG
118 GTTTATGGT-GCCTAATCCTGAAAAGAAAG-G-----GGATT---AGTA-TG
* ** ** * *
4068 AAAAGATTG-GGGACT--TTTACGAGAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTT
1 AGAATCTTGTTTGTCTCATTT--GAG---GAATG-AA----C-TTT---G-----ACTTT-A---
* * * ** * * * * ** * * * *
4130 TAAGAAAAATAAG-GCAAAGAAAAG-ATTTCCATACAAAAAAAAACCATAAATATAATTTATCCT
43 CAAAA---ATAGGTGGGAAGAAAAGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCT
* * * * * * * ** ***
4193 AATGAGGAGAATGTGTTTATAGTGCCTAATCAC-GAAATGAATGAAGATCCTTACT-
104 TATGAGAAAAATATGTTTATGGTGCCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* * *
4248 AGAATCCATGTTTGTCACTTTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAAT-CTTGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* **
4311 GCGTATGTTGCAAAATGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* * *
4376 CTAACCCTAAAAAGAAAGGGGATTAGTATT
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * *
4406 AGTATTCTTGTTTGTCTTATTTAAGTGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** ** * * * * * * *
4467 AAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AATGAATGTGTTTTTG
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTATG
* * ** ** * *
4531 GTTCCCAATATTGAAAAGATTGGGGACTT-TTACG
125 GTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTATG
* *** * * * ** * * * **
4565 AGAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTT-ACAAAAATAGGTGGGAAGAAAA
* * * ** * * * * * * * *
4629 G-ATTTCCTTAC-AAAGGAAAACAATAAATCTCATTTATCCTAATGAGGAGAATGTGTTTATGGT
64 GCGTAT-CTTGCAAAACCAAAGC-ATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
4692 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
*
4724 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
4787 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
4852 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
4882 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * * * ** * *
4943 AAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGCAGCCTAATGA-ATGGAATGTGTTTTTG
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AAAATATGTTTATG
* * * * *** * * *
5007 GTTCCCAAGCTTTTCAAGATTA-GCGACTT-TTATG
125 GTGCCTAATCCTGAAAAGA-AAGGGGA-TTAGTATG
* ** * * * * ** * * **
5041 AGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * ** * * * * * * * *
5104 AG-ATTTCCATACAAAAAAAAACCATAAATATCATTTATCGTAATGAGGAGAATGTGTTTATGGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
5168 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
*
5200 AGAATCTATGTTTGTCTCATTTGAGGAATAAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
5263 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
5328 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
5358 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * * ** *
5419 AAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGA-AAGGAATGCGTTTTTG
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTATG
* * * *** *
5483 GTTCCCAATCTTTTCAAGATTA-GGGACGTT--TATG
125 GTGCCTAATCCTGAAAAGA-AAGGGGA--TTAGTATG
* ** * * * * ** * * **
5517 AGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * ** * * * * * * * *
5580 AG-ATTTCCATACAAAAAAAAACCATAAATATCATTTATCCTAATAAGGAGAATGTGTTTATGGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
5644 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
*
5676 AGAATCTATGTTGGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
5739 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
5804 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
5834 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** * * * * * * *
5895 AAAGCTTCTCTTG-TGACCCTAAAGCATTAATGTCTTGTAT-CTTAATGA-AAGGAATGTGTTTT
61 AAAGCGTATCTTGCAAAACC-AAAGCATCAATATCATGTATCCTT-ATGAGAA-AAATATGTTTA
* * * * ** * *
5957 TGGTTCCCAATCTTGGAAAGATTGGGGACTT-TTACG
123 TGGTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTATG
* ** * * * ** * * **
5993 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTAC-AAAAATAGGTGGGAAGAAAA
* * * * ** * * * * * * * **
6057 G-ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG
64 GCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTG
* * ** ***
6121 CCTAATCAC-GAAATGAATGAAGATCCTTACT-
128 CCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* ** * * *
6152 AGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGGAAG-AAA
1 AGAAT-CTTGTTTGTCTCATTTGAGG-AATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAA
* * * * * * * * *
6215 GTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTATGCTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
**
6280 CTAATCCTGAAAAGATTGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * * *
6310 AGTATTCATGTTTGCCTTATTTAAGTGACA--AAGTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * *
6371 AAGGCTTCTCTTG-AGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAGGTTT-
61 AAAGCGTATCTTGCA-AAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAAT-ATGTTTA
* * * * * *
6433 TGGTTCCCAATCTTTG-AAAGATTA-GGGACTT-TTACG
123 TGGTGCCTAATC-CTGAAAAGA-AAGGGGA-TTAGTATG
* ** * * * ** * * **
6469 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * ** * * * * * * * * * *
6532 AG-ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTATAGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
* * ** ***
6596 GCCTAATCAC-GAAATGAATGAAGATCCTTACT-
127 GCCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* * * * * * * *
6628 AGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTAGAGAAATTGGTGGGAAG-AAAG
1 AGAAT-CTTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAAG
* * * * * * * * * *
6692 TGTTTCCTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTATGTTTATGCTGCC
65 CGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCC
** *
6757 TAATCCTGAAAAGATTGAGGATTAGTATG
130 TAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * *
6786 AGTATTTTTGTTTGCCTTATTTAAGTGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** ** * * * * *
6847 AAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAATCCCAAAGCATTAAT
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGA----AAA--A-T-AT
* * * * *
6912 GTCT-T-GTATCCTAA---TGAAATGAATGTGTTTTTGG-TTCCCAATATTG
118 GTTTATGGT-GCCTAATCCTGAAAAGAAAG-G-----GGATT---AGTA-TG
* ** ** * *
6958 AAAAGATTG-GGGACT--TTTACGAGAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTT
1 AGAATCTTGTTTGTCTCATTT--GAG---GAATG-AA----C-TTT---G-----ACTTT-A---
* * * ** * * * ** * * * *
7020 TAAGAAAAATAAG-GCAAAGAAAAG-ATTTCCTTAC-AAAGGAAAACAATAAATCTCATTTATCC
43 CAAAA---ATAGGTGGGAAGAAAAGCGTAT-CTTGCAAAACCAAAGC-ATCAATATCATGTATCC
* * * * ** * * ** ***
7082 TAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACT-
103 TTATGAGAAAAATATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
*
7138 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
*
7201 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* * *
7266 CTAACCCTAAAAAGAAAGGGGATTAGTATT
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * *
7296 AGTATTCTTGTTTGTCTTATTTAAGTGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** ** * * * * * * *
7357 AAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AATGAATGTGTTTTTG
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTATG
* * ** ** * *
7421 GTTCCCAATATTGAAAAGATTGGGGACTT-TTACG
125 GTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTATG
* **** * * * ** * * * **
7455 AGAATCAATACAAGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTT-ACAAAAATAGGTGGGAAGAAAA
* * * ** * * * * * * * *
7519 G-ATTTCCTT-CCAAAGGAAAACAATAAATCTCATTTATCCTAATGAGGAGAATGTGTTTATGGT
64 GCGTAT-CTTGCAAAACCAAAGC-ATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
7582 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
7614 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
7677 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
7742 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
7772 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTAACAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-T-ACAAAAATAGGTGGGAAGA
* * ** * * * * * * * *
7833 AAAGCTTCTCTTG-TGACCCTAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTT
61 AAAGCGTATCTTGCAAAACC-AAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTAT
* * * * ** *
7896 GGTTCCCAATCTTGGAAAGATTGGGGACTT-TTACT-
124 GGTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTA-TG
* ** * * * ** * * **
7931 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTAC-AAAAATAGGTGGGAAGAAAA
** * * * ** * * * * * * * **
7995 GATTTTCATACAAAAAAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* * ** ***
8060 CTAATCAC-GAAATGAATGAAGATCCTTACT-
129 CTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* ** * * *
8090 AGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGGAAG-AAA
1 AGAAT-CTTGTTTGTCTCATTTGAGG-AATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAA
* * * * * * * * *
8153 GTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTATGCTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* **
8218 CTAATCCTGAAAGGATTGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * *
8248 AGTATTCATGTTTGCCTTATTTAAGTGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * * ** * * * * *
8309 AAGGCTTCTTTTG-AGACCCCAAAGCATTAA-AGTCTTGTATCCTAATGA-AAGGAATAAGGTTT
61 AAAGCGTATCTTGCA-AAACCAAAGCATCAATA-TCATGTATCCTTATGAGAA-AAAT-ATGTTT
* * * ** * *
8371 -TGGTTCCCAATCTTTG-AAAGATTGGGGACTT-TTACG
122 ATGGTGCCTAATC-CTGAAAAGAAAGGGGA-TTAGTATG
* ** * * * ** * * **
8407 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * ** * * * * * * * * * * *
8470 AG-ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGATTATAGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
* * ** ***
8534 GCCTAATCAC-GAAATGAATGAAGATCCTTACT-
127 GCCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* * * * * * *
8566 AGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAGAATTTAGAGAAATTGGTGGGAAG-AAAG
1 AGAAT-CTTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAAG
* * * * * * * * * *
8630 TGTTTCCTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTATGTTTATGCTGCC
65 CGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCC
** *
8695 TAATCCTGAAAAGATTGAGGATTAGTATG
130 TAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * *
8724 AGTATTTTTGTTTGCCTTATTTAAGTGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** ** * * * * *
8785 AAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAATCCCAAAGCATTAAT
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGA----AAA--A-T-AT
* * * * *
8850 GTCT-T-GTATCCTAA---TGAAATGAATGTGTTTTTGG-TTCCCAATATTG
118 GTTTATGGT-GCCTAATCCTGAAAAGAAAG-G-----GGATT---AGTA-TG
* ** ** * *
8896 AAAAGATTG-GGGACT--TTTACGAGAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTT
1 AGAATCTTGTTTGTCTCATTT--GAG---GAATG-AA----C-TTT---G-----ACTTT-A---
* * * ** * * * ** * * * *
8958 TAAGAAAAATAAG-GCAAAGAAAAG-ATTTCCTTAC-AAAGGAAAACAATAAATCTCATTTATCC
43 CAAAA---ATAGGTGGGAAGAAAAGCGTAT-CTTGCAAAACCAAAGC-ATCAATATCATGTATCC
* * * * ** * * ** ***
9020 TAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACT-
103 TTATGAGAAAAATATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
*
9076 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
*
9139 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* * *
9204 CTAACCCTAAAAAGAAAGGGGATTAGTATT
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * *
9234 AGTATTCTTGTTTGTCTTATTTAAGTGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** ** * * * * * * *
9295 AAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AATGAATGTGTTTTTG
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTATG
* * ** ** * *
9359 GTTCCCAATATTGAAAAGATTGGGGACTT-TTACG
125 GTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTATG
* **** * * * ** * * * **
9393 AGAATCAATACAAGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTT-ACAAAAATAGGTGGGAAGAAAA
* * * ** * * * * * * * *
9457 G-ATTTCCTT-CCAAAGGAAAACAATAAATCTCATTTATCCTAATGAGGAGAATGTGTTTATGGT
64 GCGTAT-CTTGCAAAACCAAAGC-ATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
9520 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
9552 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
9615 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
9680 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
9710 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTAACAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-T-ACAAAAATAGGTGGGAAGA
* * ** * * * * * * * *
9771 AAAGCTTCTCTTG-TGACCCTAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTT
61 AAAGCGTATCTTGCAAAACC-AAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTAT
* * * * ** *
9834 GGTTCCCAATCTTGGAAAGATTGGGGACTT-TTACT-
124 GGTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTA-TG
* ** * * * ** * * **
9869 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTAC-AAAAATAGGTGGGAAGAAAA
* * * * * * * * * * * * **
9933 G-ATTTCATACAAAA-AAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* * ** ***
9996 CTAATCAC-GAAATGAATGAAGATCCTTACT-
129 CTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* ** * * *
10026 AGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGGAAG-AAA
1 AGAAT-CTTGTTTGTCTCATTTGAGG-AATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAA
* * * * * * * * *
10089 GTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTATGCTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* **
10154 CTAATCCTGAAAGGATTGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * *
10184 AGTATTCATGTTTGCCTTATTTAAGTGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* ** * * * * *
10245 AAGGC-T-TCTTTG-AGACCCCAAAGCATTAA-AGTCTTGTATCCTAATGA-AAGGAATAAGGTT
61 AAAGCGTATC-TTGCA-AAACCAAAGCATCAATA-TCATGTATCCTTATGAGAA-AAAT-ATGTT
* * * ** * *
10305 T-TGGTTCCCAATCTTTG-AAAGATTGGGGACTT-TTACG
121 TATGGTGCCTAATC-CTGAAAAGAAAGGGGA-TTAGTATG
* ** * * * ** * * **
10342 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * ** * * * * * * * * * * *
10405 AG-ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGATTATAGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
* * ** ***
10469 GCCTAATCAC-GAAATGAATGAAGATCCTTACT-
127 GCCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* *
10501 AGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAAT-CTTGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
*
10564 GCGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* * *
10629 CTAACCCTAAAAAGAAAGGGGATTAGTATT
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * *
10659 AGTATTCTTGTTTGTTTTATTTAAAAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTT-GAGGA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** * * * * * * * * *
10720 AAGGCTTCCCTTGC-GACCCGAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTT
61 AAAGCGTATCTTGCAAAACC-AAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTAT
* * * *** * *
10783 GGTTCCCAATCTTTTCAAGATTA-GGGACTT-TTATG
124 GGTGCCTAATCCTGAAAAGA-AAGGGGA-TTAGTATG
* ** * * * * ** * * **
10818 AGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * * * * * * * * * *
10881 AG-ATTTCCATACAAAA-AAAACCATAAATATCATTTATCCTAATAAGGAGAATGTGTTTATGGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
10944 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
*
10976 AGAATCTATGTTGGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
11039 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
11104 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
11134 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** * * * * * * * *
11195 AAAGCTTCTCTTG-TGACCCTAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTT
61 AAAGCGTATCTTGCAAAACC-AAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTAT
* * * * ** *
11258 GGTTCCAAATCTTGGAAAGATTGGGGACTT-TTACT-
124 GGTGCCTAATCCTGAAAAGAAAGGGGA-TTAGTA-TG
* ** * *** ** * * **
11293 AGAATCAATGCATGTCTCATTTAAATTACAAACTTTGATTTTACGAAAAATAAG-GCAAAGAAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTAC-AAAAATAGGTGGGAAGAAAA
* * * * ** * * * * * * * **
11357 G-ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTG
64 GCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTG
* * ** ***
11421 CCTAATCAC-GAAATGAATGAAGATCCTTACT-
128 CCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* ** * * *
11452 AGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGGAAG-AAA
1 AGAAT-CTTGTTTGTCTCATTTGAGG-AATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAA
* * * * * * * * *
11515 GTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTATGCTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
**
11580 CTAATCCTGAAAAGATTGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * * * *
11610 AGTATTCATGTTTGCCTTATTTAAGTGACA--AACTATGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * *
11671 AAGGCTTCTCTTG-AGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAGGTTT-
61 AAAGCGTATCTTGCA-AAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAAT-ATGTTTA
* * * ** * *
11733 TGGTTCCCAATCTTTG-AAAGATTGGGGACTT-TTACG
123 TGGTGCCTAATC-CTGAAAAGAAAGGGGA-TTAGTATG
* ** * * * ** * * **
11769 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * ** * * * * * * * * * * *
11832 AG-ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGATTATAGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
* * ** ***
11896 GCCTAATCAC-GAAATGAATGAAGATCCTTACT-
127 GCCTAATC-CTGAAAAGAAAGGGGATTAGTA-TG
* *
11928 AGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAGAAAA
1 AGAAT-CTTGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
*
11992 -CGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* * *
12056 CTAACCCTAAAAAGAAAGGGGATTAGTATT
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * * * *
12086 AGTATTCTTGTTTGTCTTATTT-A-AAAGGCAAACTTTGA-TTCTATCAATAA-CGGTAGAAAGA
1 AG-AATCTTGTTTGTCTCATTTGAGGAATG--AACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * ** * * * * * * * * * *
12147 AAGGCTTCCCTTGC-GACCCGAAAGCATTACTGTCTTGTATCCTAATGA-AAGGAATGTGTTTTT
61 AAAGCGTATCTTGCAAAACC-AAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTAT
* * * *** * *
12210 GGTTCCCAATCTTTTCAAGATTA-GGGACTT-TTATG
124 GGTGCCTAATCCTGAAAAGA-AAGGGGA-TTAGTATG
* ** * * * * ** * * **
12245 AGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * ** * * * * * * *
12308 AG-ATTTCCATAG-AAAAAAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGG
63 AGCGTAT-C-TTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGG
* ** * * ** ***
12371 TGGCTAATTATGAAATGAATGAAGATCCTTACT-
126 TGCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
12404 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* * *
12467 GCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTACGAGAAAACTATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
12532 CTAATCCTGAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* * * * * *
12562 AGTATTCTTGTTTGTCTTATTTTAGAGACA--AACTTTGA-TTCTATCAATAA-CGGTAGGAAGA
1 AG-AATCTTGTTTGTCTCATTTGAG-GA-ATGAACTTTGACTT-TA-CAAAAATAGGTGGGAAGA
* * * ** * * * * * * * *
12623 AAAGCTTCTCTTGCGACCCCAAAGTATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTG
61 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AAATATGTTTATG
* * ** **** * *
12687 GTTCCCAATATTTTCGAGATTA-GGGACTT-TTATG
125 GTGCCTAATCCTGAAAAGA-AAGGGGA-TTAGTATG
* * * * * * ** * * **
12721 AGAATCAATGCTTGTGTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAGAAA
1 AGAATC-TTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACA--AAAATAGGTGGGAAGAAA
* * * * * * * * * * *
12784 AG-ATTTCCATACAAAA-AAAACCATAAATATCATTTATCCTTATGAGGAGAATGTGTTTATGGT
63 AGCGTAT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGT
** * * ** ***
12847 GCCTAATTATGAAATGAATGAAGATCCTTACT-
127 GCCTAATCCTGAAAAGAAAGGGGATTAGTA-TG
12879 AGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAAATAGGTGGGAAG-AAA
1 AGAATCT-TGTTTGTCTCATTTGAGGAATGAACTT-TGACTTTACAAAAATAGGTGGGAAGAAAA
* *
12942 GCATATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
64 GCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGC
* *
13007 CTAACCCTAAAAAGAAAGGGGATTAGTATG
129 CTAATCCTGAAAAGAAAGGGGATTAGTATG
* *
13037 AGTATTCTTGTTTGTCTTATTT
1 AG-AATCTTGTTTGTCTCATTT
13059 TAGAGACAAA
Statistics
Matches: 7665, Mismatches: 2586, Indels: 1628
0.65 0.22 0.14
Matches are distributed among these distances:
156 17 0.00
157 309 0.04
158 2987 0.39
159 3619 0.47
160 226 0.03
161 13 0.00
163 31 0.00
164 1 0.00
165 18 0.00
166 21 0.00
167 15 0.00
168 15 0.00
169 6 0.00
170 15 0.00
171 24 0.00
172 15 0.00
173 6 0.00
174 12 0.00
178 9 0.00
179 21 0.00
180 11 0.00
181 15 0.00
182 20 0.00
183 3 0.00
184 12 0.00
185 12 0.00
186 21 0.00
187 15 0.00
188 9 0.00
189 38 0.00
190 11 0.00
192 16 0.00
193 99 0.01
194 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
AGAATCTTGTTTGTCTCATTTGAGGAATGAACTTTGACTTTACAAAAATAGGTGGGAAGAAAAGC
GTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCT
AATCCTGAAAAGAAAGGGGATTAGTATG
Found at i:4017 original size:34 final size:34
Alignment explanation
Indices: 3974--4041 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
3964 CTCTTGTGAC
3974 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
4008 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
4042 GAATGTGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (34 bp):
CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
Found at i:6907 original size:34 final size:34
Alignment explanation
Indices: 6864--6931 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
6854 CTCTTGTGAC
6864 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
6898 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
6932 GAATGTGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (34 bp):
CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
Found at i:7517 original size:159 final size:155
Alignment explanation
Indices: 6899--19297 Score: 2207
Period size: 159 Copynumber: 77.7 Consensus size: 155
6889 TAATGAAATC
* * * *
6899 CCAAAGCATTAATGTCTTGTATCCTAATGA-AATGAATGTGTTTTTGGTTCCCAATATTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ***
6963 ATTGGGGACTTTTACGAGAATCAATGCAAGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAA
65 AATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAAA
* *
7028 ATAAGGCAAAGAAAAGATTTCCTTAC-AAA
127 ATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * *
7057 GGAAAACAATAAATCTCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAA
1 CCAAAGC-ATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAA
* ** * * * * * ** *
7120 TGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAA
63 AGAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTG-AA
* ** *
7184 AAATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
125 AAATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * * * *
7216 CCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * **
7281 AAGGGGATTAGTATTAGTATTC-TTGTTTGTCTTATTT-AAGTGACAAACTTTGATTCT-ATCAA
66 ATGGGGATT-TTACTAG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAAAA
* * **
7343 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACC
128 TAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * * *
7375 CCAAAGCATTAATGTCTTGTATCCTAATGA-AATGAATGTGTTTTTGGTTCCCAATATTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ****
7439 ATTGGGGACTTTTACGAGAATCAATACAAGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAA
65 AATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAAA
* *
7504 ATAAGGCAAAGAAAAGATTTCCTT-CCAAA
127 ATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * *
7533 GGAAAACAATAAATCTCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAA
1 CCAAAGC-ATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAA
* ** * * * * * ** **
7596 TGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAA
63 AGAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAA
* ** *
7660 AAATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
125 AAATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * *
7692 CCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * *
7756 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-AAC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* * *
7817 AATAACGGTAGGAAGAAAAGCTTCTCTTGTG-AC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * *
7850 CCTAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* **
7914 GATTGGGGACTTTTACTAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAA
64 GAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * * *
7979 AATAAGGCAAAGAAAAGATTTTCATACAAAA
126 AATAAGGCAAAGAAAAG-CTTTCTTGCGAAA
** * * * * ** ** *
8010 AAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
8074 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
8138 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * * *
8168 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAGG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * **
8232 ATTGGGGATTAGTA-TGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAA
* * * * **
8293 AATAACGGTAGAAAGAAAGGCTTCTTTTGAGACC
126 AATAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * *
8327 CCAAAGCATTAAAGTCTTGTATCCTAATGA-AAGGAATAAG-GTTT-TGGTTCCCAATCTTTG-A
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAAT--GTGTTTATGGTGCCTAATC-TTGAA
* * ** *
8388 AAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
62 AAGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GA
* * * *
8453 AAAATAAGGCAAAGAAAAGATTTCCATACAAAA
124 AAAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * * * * ** *
8486 GAAAACCATAAATATAATT-TATCCTAACGAGGAGAATGTGATTATAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * * * ** * * *
8550 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAGAATTTAGAGAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG-ATTTTGAAAAA
** ** * *
8615 TTGGTGGGAAG-AAAGTGTTTCCTGCGAAA
128 TAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * * * * *
8644 CCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * *** * * * **
8709 TTGAGGATTAGTA-TGAGTATTTTTGTTTGCCTTATTT-AAGTGACAAACTTTGATTCT-ATCAA
66 ATGGGGATT-TTACT-AGAATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAAAA
* * **
8771 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACC
128 TAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * ** * * *
8803 CCAAAGCATTAATGTCTTGTATCCTAATGA-AATCCCAAAGCATTAAT-GT-CTTGTATCCTAAT
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA---GAATGTGTTTATGGTGCCT-AAT-CT--T
* *** * * * * * *** * *
8865 GAAATGAATGTGTTTTTGGTTCCCA-ATATTGAAAAGATTGGGGACTTTTACGAGAATCAATGCA
59 GAAAAGAATG-GGGATT--TTACTAGA-A-T-CAATG-TTTGTCTCATTTA--A-AGT--A--CA
* * * * *
8929 AGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCTTAC-A
110 A---AC-TTT---G-----ATTTTGA----AA-AATA---AGGCAAAGAAAAGCTTT-CTTGCGA
8993 AA
154 AA
** * * * *
8995 GGAAAACAATAAATCTCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAA
1 CCAAAGC-ATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAA
* ** * * * * * ** *
9058 TGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAA
63 AGAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTG-AA
* ** *
9122 AAATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
125 AAATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * * * *
9154 CCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * **
9219 AAGGGGATTAGTATTAGTATTC-TTGTTTGTCTTATTT-AAGTGACAAACTTTGATTCT-ATCAA
66 ATGGGGATT-TTACTAG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAAAA
* * **
9281 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACC
128 TAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * * *
9313 CCAAAGCATTAATGTCTTGTATCCTAATGA-AATGAATGTGTTTTTGGTTCCCAATATTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ****
9377 ATTGGGGACTTTTACGAGAATCAATACAAGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAA
65 AATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAAA
* *
9442 ATAAGGCAAAGAAAAGATTTCCTT-CCAAA
127 ATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * *
9471 GGAAAACAATAAATCTCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAA
1 CCAAAGC-ATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAA
* ** * * * * * ** **
9534 TGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAA
63 AGAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAA
* ** *
9598 AAATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
125 AAATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * *
9630 CCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * *
9694 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-AAC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* * *
9755 AATAACGGTAGGAAGAAAAGCTTCTCTTGTG-AC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * *
9788 CCTAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* **
9852 GATTGGGGACTTTTACTAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAA
64 GAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * *
9917 AATAAGGCAAAGAAAAGATTTCATAC-AAA
126 AATAAGGCAAAGAAAAGCTTTCTTGCGAAA
** * * * * ** ** *
9946 AAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
10010 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
10074 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * * *
10104 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAGG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * **
10168 ATTGGGGATTAGTA-TGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAA
* * * **
10229 AATAACGGTAGAAAGAAAGGC-TTCTTTGAGACC
126 AATAA-GG--CAAAGAAAAGCTTTC-TTGCGAAA
* * *
10262 CCAAAGCATTAAAGTCTTGTATCCTAATGA-AAGGAATAAG-GTTT-TGGTTCCCAATCTTTG-A
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAAT--GTGTTTATGGTGCCTAATC-TTGAA
* * ** *
10323 AAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
62 AAGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GA
* * * *
10388 AAAATAAGGCAAAGAAAAGATTTCCATACAAAA
124 AAAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * * * * ** *
10421 GAAAACCATAAATATAATT-TATCCTAACGAGGAGAATGTGATTATAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * * * ** **
10485 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAT-ACTTTACAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAAAA
* ** * *
10549 ATAGGTGGGAAG-AAAGCGTATCTTGCAAAA
127 ATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * * * * *
10579 CGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * * **
10644 AAGGGGATTAGTATTAGTATTC-TTGTTTGTTTTATTTAAAAG-ACAAACTTTGATTCT-ATCAA
66 ATGGGGATT-TTACTAG-AATCAATGTTTGTCTCATTT-AAAGTACAAACTTTGATTTTGAAAAA
* * * *
10706 TAACGGTAGAAAGAAAGGCTTCCCTTGCG-AC
128 TAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * * ***
10737 CCGAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTTTCAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * ** * *
10801 GATTAGGGACTTTTA-TGAGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTAAGGA
64 GAATGGGGA-TTTTACT-AGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAA
* * *
10865 AAATAAGGCAAAGAAAAGATTTCCATAC-AAA
125 AAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * *
10896 AAAAACCATAAATATCATT-TATCCTAATAAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAAT
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAAA
** * * * * * * ** **
10959 GAATGAAGATCCTTACTAGAATCTATGTTGGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAA
64 GAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAAA
* ** *
11023 AATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
126 AATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * *
11054 CCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * **
11118 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* * *
11179 AATAACGGTAGGAAGAAAAGCTTCTCTTGTG-AC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * *
11212 CCTAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCAAATCTTGGAAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* ** *
11276 GATTGGGGACTTTTACTAGAATCAATGCATGTCTCATTTAAATTACAAACTTTGATTTTACGAAA
64 GAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * * *
11341 AATAAGGCAAAGAAAAGATTTCCATACAAAA
126 AATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * ** ** *
11372 GAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
11436 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
11500 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * *
11530 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * **
11594 ATTGGGGATTAGTA-TGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTATGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAA
* * * **
11655 AATAACGGTAGAAAGAAAGGCTTCTCTTGAGACC
126 AATAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* *
11689 CCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAG-GTTT-TGGTTCCCAATCTTTG-A
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAAT--GTGTTTATGGTGCCTAATC-TTGAA
* * ** *
11750 AAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
62 AAGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GA
* * * *
11815 AAAATAAGGCAAAGAAAAGATTTCCATACAAAA
124 AAAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * * * * ** *
11848 GAAAACCATAAATATAATT-TATCCTAACGAGGAGAATGTGATTATAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * * * ** **
11912 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAT-ACTTTACAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAAAA
* ** * *
11976 ATAGGTGGGAAGAAAA-CGTATCTTGCAAAA
127 ATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * * * * *
12006 CGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * * **
12071 AAGGGGATTAGTATTAGTATTC-TTGTTTGTCTTATTTAAAAG-GCAAACTTTGATTCT-ATCAA
66 ATGGGGATT-TTACTAG-AATCAATGTTTGTCTCATTT-AAAGTACAAACTTTGATTTTGAAAAA
* * * *
12133 TAACGGTAGAAAGAAAGGCTTCCCTTGCG-AC
128 TAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * * * ***
12164 CCGAAAGCATTACTGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTTTCAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * ** * *
12228 GATTAGGGACTTTTA-TGAGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTAAGGA
64 GAATGGGGA-TTTTACT-AGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAA
* * *
12292 AAATAAGGCAAAGAAAAGATTTCCATAG-AAAA
125 AAATAAGGCAAAGAAAAGCTTT-C-TTGCGAAA
** * * * * * *
12324 AAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGGCTAAT-TATGAAAT
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAAA
** * * * * * ** **
12387 GAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAA
64 GAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAAA
* ** *
12451 AATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
126 AATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * *
12482 CCAAAGCATCAATATCATGTATCCTTACGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * **
12546 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* **
12607 AATAACGGTAGGAAGAAAAGCTTCTCTTGCGACC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * * * ****
12641 CCAAAGTATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATATTTTCGAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * *
12705 ATTAGGGACTTTTA-TGAGAATCAATGCTTGTGTCATTTAAAGTACAAACTTTGATTTTAAGGAA
65 AATGGGGA-TTTTACT-AGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * *
12769 AATAAGGCAAAGAAAAGATTTCCATAC-AAA
126 AATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * *
12799 AAAAACCATAAATATCATT-TATCCTTATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAAT
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAAA
** * * * * * ** **
12862 GAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAA
64 GAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAAA
* ** * *
12926 AATAGGTGGGAAG-AAAGCATATCTTGCAAAA
126 AATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * * * * *
12957 CGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * **
13022 AAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATCA
66 ATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAAA
* * *
13083 ATAACGGTAGGAAGAAAAGCTTCTCTTGTG-AC
127 ATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * * *
13115 CCTAAAGCAATAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCAAATCTTGGAAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* ** *
13179 GATTGGGGACTTTTACTAGAATCAATGCATGTCTCATTTAAATTACAAACTTTGATTTTACGAAA
64 GAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * * *
13244 AATAAGGCAAAGAAAAGATTTCCATACAAAA
126 AATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * ** ** *
13275 GAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
13339 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
13403 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * *
13433 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* ** * * * * * * **
13497 ATTGGGGATTAGAATGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTATGATTCT-ATCA
65 AATGGGGATTTTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAAA
* * * **
13559 ATAACGGTAGAAAGAAAGGCTTCTCTTGAGACC
127 ATAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* *
13592 CCAAAGC----ATGTCTTGTATCCTAATGA-AAGGAATAAG-GTTT-TGGTTCCCAATCTTTG-A
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAAT--GTGTTTATGGTGCCTAATC-TTGAA
* * ** *
13649 AAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
62 AAGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GA
* * * * *
13714 AAAATAAGGAAAAGAAAAGATTTCCATACAAAA
124 AAAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * ** ** *
13747 GAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
13811 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
13875 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * *
13905 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * **
13969 ATTGGGGATTAGTA-TGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAA
* * * **
14030 AATAACGGTAGAAAGAAAGGCTTCTCTTGAGACC
126 AATAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * *
14064 CCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAG-GTTT-TGGTTCCCAATATTGAAA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAAT--GTGTTTATGGTGCCTAATCTTGAAA
* * * **
14126 ATATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
63 AGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT---GA
* * * *
14191 AAAATAAGGCAAAGAAAAGATTTCCATACAAAA
124 AAAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * *
14224 AAAAACCCATAAATATAATT-TATCCTAACGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAA
1 CCAAA-GCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAA
* ** * * * * * ** **
14287 TGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAA
63 AGAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAA
* ** *
14351 AAATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
125 AAATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * * *
14383 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* ** * * * * * * **
14447 ATTGGGGATTAGAATGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTATGATTCT-ATCA
65 AATGGGGATTTTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAAA
* * * **
14509 ATAACGGTAGAAAGAAAGGCTTCTCTTGAGACC
127 ATAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* *
14542 CCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAG-GTTT-TGGTTCCCAATCTTTG-A
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAAT--GTGTTTATGGTGCCTAATC-TTGAA
* * ** *
14603 AAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
62 AAGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GA
* * * * *
14668 AAAATAAGGAAAAGAAAAGATTTCCATACAAAA
124 AAAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * * * ** *
14701 GAAAACCATAAATATAATT-TATCCTCACGAGAAGAATGTGTTTATAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * * * * *
14765 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTAGAGAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG-ATTTTGAAAAA
** ** *
14830 TTGGTGGGAAGAAATTG-TTTCTTGCGAAA
128 TAAG-GCAAAGAAA-AGCTTTCTTGCGAAA
* * * * * * * * * * * * * *
14859 CCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTTTGATTCT-AT-CAATAA-CGGTAGGAA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGC-CTAATC--T-TGAA
**** * * * * * * * *
14921 GAA-AA-GCTTCTTTTGCGACCCCAAAGCATTAATGTCTTGTATC--CTAATG-A-AAGGAATGT
62 -AAGAATGGGGATTTT---A---C-TAGAATCAATGT-TTGTCTCATTTAAAGTACAA--ACTTT
* *** * * * * *
14980 GCTTTTGGTTCCCAATCACG-AAATGAATGAAGATCATTAC-T-AGAAT
116 GATTTT-G--AAAAATAAGGCAAA-GAA--AAG--C-TTTCTTGCGAAA
* * * * ** * * * *
15026 CC-ATG--TT--TGTC--GCAT--T--TGAGGTAAGAAAGTGTTTCGTGCGAAACCAAAGCATCA
1 CCAAAGCATTAATGTCTTGTATCCTAATGA-G-AAGAATGTGTTT-ATG-G-TGCCTAATCTTGA
** ** * * ** * * * * ** * *
15080 CTATCAT--GTATCCTTAAGAGAAGACTATGTTTATGCTGC--CTAATCCTGA-AAAGATTGGGG
61 AAAGAATGGGGAT-TTTACTAGAA-TCAATGTTTGT-CT-CATTTAA-AGT-ACAAA-CTT--TG
** * * *
15140 ATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAA-CTTTGATTCTAT-CAATAA
117 ATT--T-TGAAAAAT-AAG---G-C--A---AA--GA-AAAGC--T--TTCT-TGCGA-AA
* * **** * * * * ** *
15199 CGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAA--AGCATTAATGTCTTGTA---T-CCTAA---
1 C----CAAAG-CATTAATGTCTTG-TATCCTAATGAG-AAGAATGTGTT-TATGGTGCCTAATCT
* ** ** * * * *** * * * *
15255 TGAAAGGAATAAGG-TTTTGGT-GCCCAATCTTTGAAAGAGTGGGGACTTTTACGAGAATCAATG
58 TGAAAAGAATGGGGATTTTACTAG---AATC----AATG-TTTGTCTCATTTA-AAGTA-CAA-A
* * * * *
15318 CATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATAC
112 C-T-T-TGA-------T------TTTGA----AA-A---ATAAGGCAAAGAAAAGCTTT-CTTGC
*
15383 AAAA
152 GAAA
** * * * * * * * *
15387 GAAAACCATAAATATAATT-TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * * ** **
15451 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTACAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAAAA
* ** * *
15515 ATAGGTGGGAAG-AAAGCGTATCTTGCAAAA
127 ATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * * * * *
15545 CGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * **
15610 AAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATCA
66 ATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAAA
* * *
15671 ATAACGGTAGGAAGAAAAGCTTCTCTTGTG-AC
127 ATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * *
15703 CCTAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * **
15767 GATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAA
64 GAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * * *
15832 AATAAGGCAAAGAAAAGATTTCCATACAAAA
126 AATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * ** ** *
15863 GAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
15927 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
15991 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * *
16021 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * *
16085 ATTGGGGATTAGTA-TGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTTTGATTCTATCA
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATT-T-TGA
* * **
16147 ATAACGAT-A-G-AAAGAAAGGCTTCTCTTGAGACC
124 A-AA--ATAAGGCAAAGAAAAGCTT-TCTTGCGAAA
* *
16180 CCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAG-GTTT-TGGTTCCCAATCTTTG-A
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAAT--GTGTTTATGGTGCCTAATC-TTGAA
* * * ** *
16241 AAGATTAGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
62 AAGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GA
* * * *
16306 AAAATAAGGCAAAGAAAAGATTTCCATACAAAA
124 AAAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * * * ** *
16339 GAAAACCATAAATATAATT-TATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** * * *
16403 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAGAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG-ATTTTGAAAAA
** ** * *
16468 TTGGTGGGAAG-AAAGTTTTTCCTGCGAAA
128 TAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * * * *
16497 CCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * * **
16562 TTGAGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTT-AAGTGACAAACTTTGATTCT-ATCA
66 ATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAAA
* * **
16623 ATAACGGTAGAAAGAAAAGCTTCTTTTGCGACC
127 ATAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
* * * * *
16656 CCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATATTGGAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ** * *
16720 ATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTAAAAGTACAAACTTTGATTTTACAAAAA
65 AATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAAA
* * * *
16785 ATAAGGCAAAGAAAAGATTTCCATACAAAA
127 ATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * *
16815 GAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAAT
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAAA
** * * * * * ** *
16878 GAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAAA
64 GAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTG-AAA
* ** * *
16942 AATAGGTGGGAAG-AATGCGTATCTTGCGAAA
126 AATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * *
16973 CGAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * **
17037 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* **
17098 AATAACGGTAGGAAGAAAAGCTTCTCTTGCGACC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * * * ***
17132 CCAAAGTATTAATGTCTTGTATCCTAATGA-ATGGAATGTGTTTTTGGTTCCCAATCTTTTCAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ** * *
17196 ATTAGGGACTTTTA-TGAGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTAAGGAA
65 AATGGGGA-TTTTACT-AGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * * *
17260 AATAAGGCAAAGAAAAGATTTGCATACAAAAA
126 AATAAGGCAAAGAAAAGCTTT-CTTGC-GAAA
** * * * * *
17292 AAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAAT
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAAA
* ** * * * * * * ** *
17355 GACTGAAGATCCTTACTAGAATCTATGTTGGTCTCATTTGAGGAATGAACTTAT-ACTTTGCAAA
64 GAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTG-AAA
* ** *
17419 AATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
126 AATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * * *
17450 CCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGCCTAATCCTAAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * **
17514 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* * *
17575 AATAACGGTAGGAAGAAAAGCTTCTCTTGTG-AC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * * *
17608 CCTAAAGCATTAATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCAAATCTTGGAAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* ** *
17672 GATTGGGGACTTTTACTAGAATCAATGCATGTCTCATTTAAATTACAAACTTTGATTTTACGAAA
64 GAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * * *
17737 AATAAGGCAAAGAAAAGATTTCCATACAAAA
126 AATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * ** ** *
17768 GAAAACCATAAATATCATT-TATCCTAATGAGCAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
17832 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
17896 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * * *
17926 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGGTGCCTAACCCTAAAAAG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * **
17990 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* * *
18051 AATAACGGTAGGAAGAAAAGCTTCTCTTGTG-AC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * * *
18084 CCTAAAGCATTAATGTCTTGTATCTTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAA
1 CC-AAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAA
* * **
18148 GATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAA
64 GAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAA
* * *
18213 AATAAGGCAAAGAAAA-CATTTCCATACAAAA
126 AATAAGGCAAAGAAAAGC-TTT-CTTGCGAAA
** * * * * * * ** ** *
18244 GAAAACCATAAATATAATT-TATCCTAACGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
18308 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTAGAAAA
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTT-TGATTTTGAAAA
** ** * *
18372 ATTGGTGGGAAG-AAAGTGTTTCGTGCGAAA
127 ATAAG-GCAAAGAAAAG-CTTTCTTGCGAAA
* * * * * * * *
18402 CCAAAGCATCACTATCATGTATCCTTAA-GAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCC-TAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* ** * * * * **
18466 AAAGGGGATCAGTA-TGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTTTGATTCT-ATC
65 AATGGGGAT-TTTACT-AG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTGAAA
* * * **
18527 AATAACGGTAGAAAGAAAGGCTTCTCTTGAGACC
126 AATAA-GG--CAAAGAAAAGCTT-TCTTGCGAAA
** * *
18561 CCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATAAGATTT-TGGTTCCCAATCTTTG-AA
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTG-TTTATGGTGCCTAATC-TTGAAA
* * ** *
18623 AGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
63 AGAATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAA
* * * * *
18688 AAATAAGGAAAAGAAAAGATTTCCATACAAAA
125 AAATAAGGCAAAGAAAAGCTTT-CTTGCGAAA
** * * * * * *
18720 GAAAACCATAAATATAATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-TATGAAAT
1 CCAAAGCATTAATGT-CTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-TGAAAA
** * * *** * ** **
18783 GAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGTGGAATGAACTTAT-ACTTTACAAA
64 GAATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGA-TTTTGAAA
* ** *
18847 AATAGGTGGGAAG-AAAGCGTATCTTGCGAAA
126 AATAAG-GCAAAGAAAAGC-TTTCTTGCGAAA
* * * * * *
18878 CCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGCCTAATCCTGAAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * * * * * * **
18942 AAAGGGGATTAGTA-TGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCT-ATC
65 AATGGGGATT-TTACT-AG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTGAAA
* * **
19003 AATAACGGTAGGAAGAAAAGCTTCTTTTGCGACC
126 AATAA-GGCA--AAGAAAAGCTT-TCTTGCGAAA
* * * *
19037 CCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAG
1 CCAAAGCATTAATGTCTTGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * * ** * *
19101 ATTAGGGACTTTTACGAGAATCAATGCATGTCTCATTAAAAGTACAAACTTTGATTTTACAAAAA
65 AATGGGGA-TTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTT--GAAAA
* * *
19166 ATAAGGCAAAGAAAA-CATTTCCATACAAAA
127 ATAAGGCAAAGAAAAGC-TTT-CTTGCGAAA
** * * * * ** ** *
19196 GAAAACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CCAAAGCATTAATGTC-TTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * *
19260 AATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
65 AATGGGGAT-TTTACTAGAATCAATGTTTGTCTCATTT
19298 GAGGTAAGAA
Statistics
Matches: 8445, Mismatches: 2839, Indels: 1913
0.64 0.22 0.14
Matches are distributed among these distances:
153 6 0.00
154 14 0.00
155 84 0.01
156 165 0.02
157 339 0.04
158 2826 0.33
159 3982 0.47
160 397 0.05
161 141 0.02
162 133 0.02
163 28 0.00
164 15 0.00
165 19 0.00
166 8 0.00
167 8 0.00
168 8 0.00
169 3 0.00
170 6 0.00
171 4 0.00
172 6 0.00
173 5 0.00
174 2 0.00
175 3 0.00
177 2 0.00
178 10 0.00
179 8 0.00
180 4 0.00
181 5 0.00
182 11 0.00
183 19 0.00
184 23 0.00
185 8 0.00
186 9 0.00
187 17 0.00
188 10 0.00
189 31 0.00
190 3 0.00
191 13 0.00
192 13 0.00
193 38 0.00
194 5 0.00
195 2 0.00
196 4 0.00
197 2 0.00
199 2 0.00
200 1 0.00
203 2 0.00
204 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (155 bp):
CCAAAGCATTAATGTCTTGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
ATGGGGATTTTACTAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTGAAAAATAA
GGCAAAGAAAAGCTTTCTTGCGAAA
Found at i:8845 original size:34 final size:34
Alignment explanation
Indices: 8802--8869 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
8792 CTCTTGTGAC
8802 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
8836 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
1 CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
8870 GAATGTGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (34 bp):
CCCAAAGCATTAATGTCTTGTATCCTAATGAAAT
Found at i:15940 original size:476 final size:476
Alignment explanation
Indices: 15048--19301 Score: 6812
Period size: 476 Copynumber: 8.9 Consensus size: 476
15038 CATTTGAGGT
*
15048 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
** * *
15113 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
*
15178 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
** * * * *
15243 CTTGTATCCTAATGAAAGGAATAAGGTTTTGGTGCCCAATCTTTGAAAGAGTGGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
*
15308 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
*
15373 ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
*
15438 TAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
* * *
15503 TACTTTACAAAAATAGGTGGG
456 TAATTTAGAAAAATTGGTGGG
* * * * * * * *
15524 AAGAAAGCGTATCTTGCAAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * * * *
15589 TGGTGCCTAACCCTAAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
* * *
15654 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
15719 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
*
15784 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
*
15849 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
15914 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTT
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTT
*
15978 AAAATTTAGAAAAATTGGTGGG
455 ATAATTTAGAAAAATTGGTGGG
*
16000 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
** * *
16065 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
* *
16130 AAACTTTGATTCTATCAATAACGATAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
** * * *
16195 CTTGTATCCTAATGAAAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTAGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
*
16260 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* *
16325 ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTATAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
16390 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTA
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
* *
16455 GAATTTAGAGAAATTGGTGGG
456 TAATTTAGAAAAATTGGTGGG
* * * *
16476 AAGAAAGTTTTTCCTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
** *
16541 TGCTGCCTAATCCTGAAAAGATTGAGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
* *
16606 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTTTTGCGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
*
16671 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATATTGGAAAGATTGGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
*
16736 AGAATCAATGCATGTCTCATTAAAAGTACAAACTTTGATTTTACA-AAAAATAAGGCAAAGAAAA
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAAATAAGGCAAAGAAAA
*
16800 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGC
325 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
16865 CTAATTATGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTT
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTT
* *
16930 ATACTTT-GCAAAAATAGGTGGG
455 ATAATTTAG-AAAAATTGGTGGG
* * * * * * *
16952 AAGAATGCGTATCTTGCGAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * *
17017 TGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
* * *
17082 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
* *** * *
17147 CTTGTATCCTAATGAATGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTTATG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
* *
17212 AGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* * *
17277 ATTTGCATACAAAAAAAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGC
326 ATTTCCATAC-AAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
17342 CTAATTATGAAATGACTGAAGATCCTTACTAGAATCTATGTTGGTCTCATTTGAGGAATGAACTT
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTT
* *
17407 ATACTTT-GCAAAAATAGGTGGG
455 ATAATTTAG-AAAAATTGGTGGG
* * * * *
17429 AAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * * *
17494 TGGTGCCTAATCCTAAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
* * *
17559 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
* * *
17624 CATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCAAATCTTGGAAAGATTGGGGACTTTTACT
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
* *
17689 AGAATCAATGCATGTCTCATTTAAATTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* *
17754 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGCAGAATGTGTTTACAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
17819 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTT
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTT
*
17883 AAAATTTAGAAAAATTGGTGGG
455 ATAATTTAGAAAAATTGGTGGG
*
17905 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * * * *
17970 TGGTGCCTAACCCTAAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
* * *
18035 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
*
18100 CTTGTATCTTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
* *
18165 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAC
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* * *
18230 ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTACAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
18295 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTT
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTT
*
18359 AAAATTTAGAAAAATTGGTGGG
455 ATAATTTAGAAAAATTGGTGGG
*
18381 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * *
18446 TGCTGCCTAATCCTGAAAAGAAAGGGGATCAGTATGAGTATTCATGTTTGCCTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
*
18511 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
** * *
18576 CTTGTATCCTAATGAAAGGAATAAGATTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
* *
18641 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGAAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
* *
18706 ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAATGAGGAGAATGTGTTTATGGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * *
18771 TAATTATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGTGGAATGAACTTA
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
* * *
18836 TACTTTACAAAAATAGGTGGG
456 TAATTTAGAAAAATTGGTGGG
* * * * *
18857 AAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTA
1 AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * *
18922 TGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
* * *
18987 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTTTTGCGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
*
19052 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTAGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
*
19117 AGAATCAATGCATGTCTCATTAAAAGTACAAACTTTGATTTTACA-AAAAATAAGGCAAAGAAAA
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAAATAAGGCAAAGAAAA
* *
19181 CATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGC
325 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
*
19246 CTAATCACGAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG
19302 TAAGAAAGTG
Statistics
Matches: 3521, Mismatches: 247, Indels: 20
0.93 0.07 0.01
Matches are distributed among these distances:
475 5 0.00
476 3056 0.87
477 460 0.13
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AAGAAAGTGTTTCTTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
TGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGTGAC
AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAG
ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
TAATTTAGAAAAATTGGTGGG
Found at i:16892 original size:952 final size:951
Alignment explanation
Indices: 15048--23587 Score: 11781
Period size: 952 Copynumber: 9.1 Consensus size: 951
15038 CATTTGAGGT
15048 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
*
15113 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
*
15178 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
** * * *
15243 CTTGTATCCTAATGAAAGGAATAAGGTTTTGGTGCCCAATCTTTGAAAGAGTGGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACG
15308 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
*
15373 ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
*
15438 TAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
* * * * * *
15503 TACTTTACAAAAATAGGTGGGAAGAAAGCGTATCTTGCAAAACGAAAGCATCAATATCATGTATC
456 TAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * *
15568 CTTATGAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGAAAGGGGATTAGTATGAGTATTCT
521 CTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCT
* *
15633 TGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTT
586 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTT
* *
15698 GTGACCCTAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG
651 GCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG
*
15763 GAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAC
716 GAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
15828 GAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGA
781 G-AAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGA
*
15893 GGAGAATGTGTTTACAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
845 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
15958 CTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
910 CTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
16000 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
*
16065 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
* *
16130 AAACTTTGATTCTATCAATAACGATAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
** * *
16195 CTTGTATCCTAATGAAAGGAATAAGGTTTTGGTTCCCAATCTTTGAAAGATTAGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACG
16260 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
* *
16325 ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTATAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* *
16390 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTA
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
* * * * * * *
16455 GAATTTAGAGAAATTGGTGGGAAGAAAGTTTTTCCTGCGAAACCAAAGCGTCACTATCATGTATC
456 TAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
** *
16520 CTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGAGGATTAGTATGAGTATTCT
521 CTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCT
* *
16585 TGTTTGTCTTATTTAAGTGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTTTT
586 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTT
*
16650 GCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATATTG
651 GCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG
*
16715 GAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTAAAAGTACAAACTTTGATTTTAC
716 GAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-
*
16780 AAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGA
780 AGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGA
* * * *
16845 GGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGT
845 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * *
16910 CTCATTTGAGG-AATGAACTTATACTTT-GCAAAAATAGGTGGG
910 CTCATTTGAGGTAA-GAACTTAAAATTTAG-AAAAATTGGTGGG
* * * * * * * *
16952 AAGAATGCGTATCTTGCGAAACGAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* ** * * *
17017 TGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
* * *
17082 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGTATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
* ** * *
17147 CTTGTATCCTAATGAATGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTTATG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACG
*
17212 AGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
* * *
17277 ATTTGCATACAAAAAAAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGC
326 ATTTCCATAC-AAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
17342 CTAATTATGAAATGACTGAAGATCCTTACTAGAATCTATGTTGGTCTCATTTGAGGAATGAACTT
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTT
* * *
17407 ATACTTT-GCAAAAATAGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTA
455 ATAATTTAG-AAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* * *
17471 TCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTAGTATGAGTATT
519 TCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATT
* *
17536 CTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTC
584 CTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTC
* * * *
17601 TTGTGACCCTAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCAAATCT
649 TTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCT
* *
17666 TGGAAAGATTGGGGACTTTTACTAGAATCAATGCATGTCTCATTTAAATTACAAACTTTGATTTT
714 TGGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTT
*
17731 ACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAAT
779 AAG-AAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAAT
* *
17796 GAGCAGAATGTGTTTACAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTT
843 GAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTT
17861 GTCTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
908 GTCTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
17905 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * * ** * * *
17970 TGGTGCCTAACCCTAAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
* * *
18035 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
* *
18100 CTTGTATCTTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACG
* * *
18165 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAC
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
* * *
18230 ATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACGAGGAGAATGTGTTTACAGTGCC
326 ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
18295 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTT
391 TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTT
* * * *
18359 AAAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTAT
455 ATAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* *
18424 CCTTAAGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATCAGTATGAGTATTC
520 CCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTC
* * * *
18489 ATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCT
585 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCT
* ** *
18554 TGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATAAGATTTTGGTTCCCAATCTT
650 TGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTT
*
18619 TGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
715 GGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
* *
18684 AGGAAAATAAGGAAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAATG
780 A-GAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATG
* * *
18749 AGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
844 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
* * * * *
18814 TCTCATTTGTGG-AATGAACTTATACTTTACAAAAATAGGTGGG
909 TCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGG
* * * * * *
18857 AAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* ** * * *
18922 TGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
* * *
18987 AAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTTTTGCGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
* *
19052 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTAGGGACTTTTACG
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACG
* *
19117 AGAATCAATGCATGTCTCATTAAAAGTACAAACTTTGATTTTACA-AAAAATAAGGCAAAGAAAA
261 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA-AGGAAAATAAGGCAAAGAAAA
* *
19181 CATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGC
325 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
*
19246 CTAATCACGAAATGAATGAAGATCATTACTAGAATCCATGTTTG--TC----------T---C--
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTT
* *
19294 ---ATTT-G------AGGT---AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTAT
455 ATAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* ** *
19346 CCTTAAGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATAAGTATTC
520 CCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTC
* * * *
19411 ATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCT
585 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCT
* ** * *
19476 TGAGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATAAGGTTTTGGTGCCCAATCTT
650 TGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTT
*
19541 TGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
715 GGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
* *
19606 AGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATAATTTATCCTAACG
780 A-GAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATG
19671 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTT
844 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATG-TTT
* * *
19736 GTCTCATTTGAGGTAGGAACTTAGAATTTAGAGAAATTGGTGGG
908 GTCTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
* * *
19780 AAGAAAGTGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * * *
19845 TGCTGCCTAATCCTGAAAAGATTGAGGATTAGTATGAGTATTTTTGTGTGCGTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
*
19910 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
* *
19975 CTTGTATCCTAATGAAATGAATGTGTTTTTGGTTCCCAAT-ATTGAAAAGATTGGGGACTTTTAC
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTAC
* * * *
20039 GAGAATCAATGCAAGTCTAATTTAAAGTACAAACTTTAATTTTAAGAAAAATAAGGCAAAGAAAA
260 GAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
*
20104 GATTTCCATACAAAAGAAAACCATAAATCTCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
325 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * * * *
20169 CTAATCACGAGATGAATGAAGATCCTTACTAGAATCCATGTTTGTTTCAGTTGAGGTAGGAACTT
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTT
* * *
20234 AGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGTGAAACCAAAG---C-A-AT-A---A-
455 ATAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
** * ** *
20289 CGGTA-GA-AAG---A-----A--CAG--T-A----G-AAAGATTGGGGATTCGTATGAGTATTC
520 CCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTC
* * * * * ** * * * ** ** ***
20334 ATGTTTGCCTTCT-TTAAGTGACA-AACTTGGATTCTATCACTAACGGT-A-GAAAGAAAG-GCT
585 TTGTTTGTC-T-TATTTA-AGAGACAAACT---TT-GAT-TCTATCAATAACGGTAGAAAGAAAA
* ** *** * * * * * * *
20394 TCTAT-TGCTACCGCAAAGCATTAATGTC-TT-GTGTCCT-AAT--GAAAGGAATG--TGT-TTT
642 GCT-TCT-CTTGCG-ACCCCA--AA-G-CATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTT
* * * *** *** * *** *** * *
20450 TGGTTCCCATTCT-TGAAAAGA-ATGGGGACTTTTACGGGTATCAATGC-ATG--TCTCAT--TT
700 TTGGTTCC-CAATCTTGGAA-AGATTGGGGACTTT-TACG-A-GAAT-CAATGCATGTC-TCATT
* * ** *** **
20508 AAAGCA-CA-AACTTTGATTTTACGA-AAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAA
758 TAA--AGTACAAACTTTGATTT-TAAGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAA
*
20570 CCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAATGAA
820 CCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAA
20635 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTG
885 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTG
20700 GG
950 GG
*
20702 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGATAAGACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* *
20767 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTACGTGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
* * *
20832 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAGGCATTAATGT
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
* * * *
20897 CTT-TATCCTAATGAAAGGAATGTGTTTTTAGTTCCCATTC-TTGAAAAGAATGGGGACTTTTAT
196 CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTAC
* *
20960 AAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAA
260 GAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
* * * * * *
21025 GACTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAATGTGATTATAGTGC
325 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
** *
21090 CTAATCTTGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTT
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTT
* ** * * *
21155 ATACTTTTCAAAAATAGGTGGGAA-AAAGTGTATCTTGCAAAACCAAAGCATCAATATCCTGTAT
455 ATAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * * * * *
21219 CCTTATAAGAAAAATATGTTTATGGTGCCTAACCCTAAAAAGAAAGGGGATTAGTATGAGTATTC
520 CCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTC
* *
21284 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCCCT
585 TTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCT
* *
21349 TGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTGCCCATTCTT
650 TGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTT
* *
21414 GAAAAGATTGGGGACTCTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
715 GGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
* * * * * * * *
21479 TGGAAAGTAAGGTAAAG-AAAGATTTCTATGCAAAAGAAAACCATCAATATCATGTATCCTGATG
780 -AGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATG
* * * * *
21543 AGGGGAATATGTTTACAGTGCCTAATCACGAAATGAATGAAAATCCTTTCTAGAATCCATGTTTG
844 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
21608 TCTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
909 TCTCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
* *
21651 AAGAAAGAGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTATGAGAAGACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* *
21716 TGCTGCCTAATCCTGAAAAAATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
* *
21781 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGC-T-TC-T---A--TC--A--A-TAAGTG
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAA-TG
* * * * *
21833 TCTT-TGTCCTAATGAATGGAATGTGTTTTTGGTTCCCATTC-TTGAAAAAAATGGGGACTTTTA
195 TCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTA
*
21896 GGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAA
259 CGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAA
* * * * * *
21961 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTG
324 AGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * *
22026 CTTAATCACGAAATGAATGAGGATCCTTACTAGAATCCATGTTTGTCTCATTTGATGAATGAACT
389 CCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACT
* * * ** *
22091 TATACTTTAAAAAAATAGGTGGGAAGAAAGCGCATCTTGCGAAACCAAAGCTTCAATATCATGTA
454 TATAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* *
22156 TCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATT
519 TCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATT
* * * *
22221 CTTGATTGTCTTATTTTAGAGACAAACTTTAATTCTATCAATAACGGTAGGAAGAAAAGCTTCTC
584 CTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTC
22286 TTGCGACCCCAAA-CATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCT
649 TTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCT
*** * * * *
22350 TTTCAAGAATAGGGACTTTTATGAGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTT
714 TGGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTT
22415 AAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAAT
779 AA-GAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAAT
* * * *
22480 GAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAGATCCTTACTAGAATCTATGTTT
843 GAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTT
* * * *
22545 GTCTCATTTGAGG-AATGAACTTATACTTTACAAAAATAGGTGGG
908 GTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGG
* * * * * * * *
22589 AAGAAAGCGTATCTTGCGAAACCAAAGCCTCAATATCATGTATCTTTATGAGAAAACTATGTTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
* * * * ** * * *
22654 AGGTGTCTAATCCTAAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGAC
66 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
* * *
22719 AAACTTTGATTCTATCAATAACGGTAGGAAGTAAAGCTTCTCTTGTA-ACCCTAAAGCATTAATG
131 AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTG-AGACCCCAAAGCATTAATG
* **
22783 TCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGATAAGGGACTTTTAC
195 TCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTAC
* * *
22848 GAGAATCAATGCATGTCTCATTTGAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAA
260 GAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
* * * * *
22913 GATTTCCATACAAAAGAAAACCATAAATATCATGTATCCTGATGAGGGGAATATGTTTACAGTGC
325 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
*
22978 CTAATCACGAAATGAATGAAGATCCTTTCTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACT
390 CTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACT
* * * * * *
23042 TAAAATTTAGAAATATTGGTGGGAAGAAAGTGTTTCGTGCGTAACCAAAGCATCACTATCATGTA
454 TATAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* **
23107 TCCTTAAGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATT
519 TCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATT
* * * *
23172 CATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTC
584 CTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTC
*
23237 TT-CAGACCCCAAAGCATTAATGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCATTC
649 TTGC-GACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATC
* *
23300 TT-GAGAAGAATGGGGACTTTTAGGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
713 TTGGA-AAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
* * * * *
23364 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATG
777 TTAA-GAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTA
* * *
23429 ATGAGGAGAATGTGTTTATACTGCTTAATCACGAAATGAATGAGGATCCTTACTAGAATCCATGT
841 ATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGT
* * * *
23494 TTGTCTCATTTGAGG-AATGAACTTATACTTTAAAAAAATAGGTGGG
906 TTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTGGG
* * * * *
23540 AAGAAAGCGTATCTTGCGAAACCAAAGCTTCAATATCATGTATCCTTA
1 AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTA
23588 CAAAATGTGC
Statistics
Matches: 6797, Mismatches: 638, Indels: 307
0.88 0.08 0.04
Matches are distributed among these distances:
920 21 0.00
921 247 0.04
922 651 0.10
923 589 0.09
924 39 0.01
925 19 0.00
926 6 0.00
927 25 0.00
928 8 0.00
929 9 0.00
930 10 0.00
931 7 0.00
932 7 0.00
933 1 0.00
935 1 0.00
936 3 0.00
937 390 0.06
938 449 0.07
939 1 0.00
940 3 0.00
941 6 0.00
942 6 0.00
943 15 0.00
944 11 0.00
945 8 0.00
946 27 0.00
947 8 0.00
948 18 0.00
949 345 0.05
950 57 0.01
951 717 0.11
952 2192 0.32
953 898 0.13
954 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (951 bp):
AAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTATGTTTA
TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGAC
AAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGT
CTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACG
AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
ATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
TAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTA
TAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
CTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCT
TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTT
GCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG
GAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
GAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAG
GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
TCATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGG
Found at i:21496 original size:159 final size:159
Alignment explanation
Indices: 20407--23504 Score: 939
Period size: 158 Copynumber: 19.6 Consensus size: 159
20397 ATTGCTACCG
* * * * * * *
20407 CAAAGCATTAATGTCTTGTGTCCTAATGAAAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
* * * ** * *
20472 TGGGGACTTTTACGGGTATCAATGCATGTCTCATTTAAAGCACAAACTTTGATTTTACGAAAAAT
66 TGGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAAAT
* ** * * *
20537 AAGG-CAAAGAAAAGATTTCCATACAAAAG
131 AAGGTGAAAG-AAAGGCTTCCTTGCAAAAC
* * * * ** ** *
20566 AAAACCATAAATATCATT-TATCCTAATG-AGGAGAATGTGTTTACAGTGCCTAATCACGAAATG
1 CAAAGCATCAATATC-TTGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAAG
** * * * * ** *
20629 AATGAAGA-TCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTA-GAA
64 AATGGGGACT-CTTACGAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTTTGATTTTATGAA
* * * * *
20691 AAAT-TGGTGGGAAGAAAGTG-TTTCGTGCGAAAC
127 AAATAAGGT-GAAAGAAAG-GCTTCCTTGCAAAAC
* * * * * *
20724 CAAAGCATCACTATCATGTATCCTTAA-GATAA-GACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CAAAGCATCAATATCTTGTATCC-TAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ** * * * * * *
20787 ATTGGGGATTAGTATGAGTATTC-ATGTTTGCCTTATTT-ACGTGACAAACTTTGATTCTAT---
64 AATGGGGACTCTTACGAG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTATGAA
* ** **
20847 CAATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCC
127 AAATAA-GGT-GAAAGAAAGGCTTC-CTTGCAAAAC
* * * * * * * *
20883 CAAGGCATTAATGTCTT-TATCCTAATGAAAGGAATGTGTTTTTAGTTCCCATTCTTGAAAAGAA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
* ** ** *
20947 TGGGGACTTTTATAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAAT
66 TGGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAAAT
* * * *
21012 AAGG-CAAAGAAAAGACTTCCATGCAAAAG
131 AAGGTGAAAG-AAAGGCTTCCTTGCAAAAC
* * * * * * * *
21041 AAAACCATCAATATCATGTATCCTGATG-AGGAGAATGTGATTATAGTGCCTAATCTTGAAATGA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAAGA
** * * * * * * ** * *
21105 ATGAAGA-TCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTAT-ACTTT-TCAAA
65 ATGGGGACT-CTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTATGAAA
*
21167 AAT-AGGTGGGAA-AAAGTG-TAT-CTTGCAAAAC
128 AATAAGGT-GAAAGAAAG-GCT-TCCTTGCAAAAC
* * * * * *
21198 CAAAGCATCAATATCCTGTATCCTTATAAGAAA--AATATGTTTATGGTGCCTAACCCTAAAAAG
1 CAAAGCATCAATATCTTGTATCC-TA-ATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ** * * * * *
21261 AAAGGGGATTAGTATGAGTATTC-TTGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTAT---
64 AATGGGGACTCTTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTATGAA
* * **
21321 CAATAACGGTAGAAAGAAAGGCTTCCCTTGCGACCC
127 AAATAA-GGT-GAAAGAAAGGCTT-CCTTGCAAAAC
* * * * * *
21357 CAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTGCCCATTCTTGAAAAGAT
1 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
** * *
21422 TGGGGACTCTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAGT
66 TGGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAAAT
* * *
21487 AAGGT-AAAGAAA-GATTTCTATGCAAAAG
131 AAGGTGAAAGAAAGGCTTCCT-TGCAAAAC
* * * * ** * ** ** *
21515 AAAACCATCAATATCATGTATCCTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
** * * * * * * ** *
21580 T-GAAAATCCTTTCTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTA-GAAAA
66 TGGGGACT-CTTACGAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTTTGATTTTATGAAAA
* * * * *
21642 AT-TGGTGGGAAGAAAGAG-TTTCGTGCGAAAC
129 ATAAGGT-GAAAGAAAG-GCTTCCTTGCAAAAC
* * * * * * *
21673 CAAAGCATCACTATCATGTATCCTTATGAGAA-GACTATGTTTATGCTGCCTAATCCTGAAAA-A
1 CAAAGCATCAATATCTTGTATCCTAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* ** * * * * *
21736 ATTGGGGATTAGTATGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTTTGATTCTAT---
65 A-TGGGGACTCTTACGAG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTATGAA
* *
21796 CAATAACGGTAGAAAGAAAGGCTT-C-T-----AT
127 AAATAA-GGT-GAAAGAAAGGCTTCCTTGCAAAAC
* * * * * * * *
21824 C--A--AT-AAGTGTCTT-TGTCCTAATGAATGGAATGTGTTTTTGGTTCCCATTCTTGAAAAAA
1 CAAAGCATCAA-TATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * ** * *
21883 ATGGGGACTTTTAGGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
65 ATGGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAAA
* ** * *
21948 TAAGG-CAAAGAAAAGATTTCCATGCAAAAG
130 TAAGGTGAAAG-AAAGGCTTCCTTGCAAAAC
* * * * * * ** * ** *
21978 AAAACCATCAATATCATGTATCATGATG-AGGAGAATGTGTTTATACTGCTTAATCACGAAATGA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * * * * * ** * *
22042 ATGAGGA-TCCTTACTAGAATCCATGTTTGTCTCATTTGATGAATGAACTTAT-ACTTTA-AAAA
65 ATGGGGACT-CTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTATGAAA
* * *
22104 AAT-AGGTGGGAAGAAAGCGCAT-CTTGCGAAAC
128 AATAAGGT-GAAAGAAAG-GCTTCCTTGCAAAAC
* * * * *
22136 CAAAGCTTCAATATCATGTATCCTTATGAGAA--AACTATGTTTATGGTGCCTAATCCTGAAAAG
1 CAAAGCATCAATATCTTGTATCCTAATGA-AAGGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * ** * * * * * * * *
22199 AAAGGGGATTAGTATGAGTATTC-TTGATTGTCTTATTTTAGAG-ACAAACTTTAATTCTAT---
64 AATGGGGACTCTTACGAG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTATGAA
* * * * **
22259 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCC
127 AAATAA-GGT-GAAAGAAAGGCTTC-CTTGCAAAAC
* * * * * ***
22295 CAAA-CATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGAA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
* * * ** * * *
22359 TAGGGACTTTTATGAGAATCAATGCATGTGTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
66 TGGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAAAT
* ** * * *
22424 AAGG-CAAAGAAAAGATTTCCATACAAAAG
131 AAGGTGAAAG-AAAGGCTTCCTTGCAAAAC
* * * * *
22453 AAAACCATAAATATCATT-TATCCTAATG-AGGAGAATGTGTTTATGGTGCCTAAT-TATGAAAT
1 CAAAGCATCAATATC-TTGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCT-TGAAAA
** * * * * * ** * *
22515 GAATGAAGA-TCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTAT-ACTTTA-CA
63 GAATGGGGACT-CTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTATGA
* *
22577 AAAAT-AGGTGGGAAGAAA-GCGTAT-CTTGCGAAAC
126 AAAATAAGGT-GAAAGAAAGGC-T-TCCTTGCAAAAC
* * * * * * * * *
22611 CAAAGCCTCAATATCATGTATCTTTATGAGAA--AACTATGTTTAAGGTGTCTAATCCTAAAAAG
1 CAAAGCATCAATATCTTGTATCCTAATGA-AAGGAA-TGTGTTTATGGTGCCTAATCTTGAAAAG
* * ** * * * * * *
22674 AAAGGGGATTAGTATGAGTATTC-TTGTTTGTCTTATTTTAGAG-ACAAACTTTGATTCTAT---
64 AATGGGGACTCTTACGAG-AATCAATGTTTGTCTCA-TTTAAAGTACAAACTTTGATTTTATGAA
* * * *
22734 CAATAACGGTAGGAAGTAAA-GCTTCTCTTG-TAACC
127 AAATAA-GGT-GAAAG-AAAGGCTTC-CTTGCAAAAC
* * * * * *
22769 CTAAAGCATTAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGGAAAG-
1 C-AAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * ** * *
22833 ATAAGGGACTTTTACGAGAATCAATGCATGTCTCATTTGAAGTACAAACTTTGATTTTACGAAAA
65 AT-GGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAA
* ** * * *
22898 ATAAGG-CAAAGAAAAGATTTCCATACAAAAG
129 ATAAGGTGAAAG-AAAGGCTTCCTTGCAAAAC
* * * * * ** * ** ** *
22929 AAAACCATAAATATCATGTATCCTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
** * * * * * ** * *
22994 TGAAGA-TCCTTTCTAGAATCCATGTTTGTCTCATTTGAGGTA-AGAACTTAAAATTTA-GAAAT
66 TGGGGACT-CTTACGAGAATCAATGTTTGTCTCATTTAAAGTACA-AACTTTGATTTTATGAAAA
* * * * **
23056 AT-TGGTGGGAAGAAAGTG-TTTCGTGCGTAAC
129 ATAAGGT-GAAAGAAAG-GCTTCCTTGCAAAAC
* * * * * *
23087 CAAAGCATCACTATCATGTATCCTTAA-GAGAA-GACTATGTTTATGCTGCCTAATCCTGAAAAG
1 CAAAGCATCAATATCTTGTATCC-TAATGA-AAGGAATGTGTTTATGGTGCCTAATCTTGAAAAG
* * ** * * * * *
23150 ATTGGGGATTAGTATGAGTATTC-ATGTTTGCCTTATTT-AAGTGACAAACTTTGATTCTAT---
64 AATGGGGACTCTTACGAG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTATGAA
* **
23210 CAATAACGGTAGAAAGAAAGGCTTCTCTT-CAGACCC
127 AAATAA-GGT-GAAAGAAAGGCTTC-CTTGCA-AAAC
* * * * * * *
23246 CAAAGCATTAATGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCATTCTTGAGAAGAA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
* * ** * *
23310 TGGGGACTTTTAGGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
66 TGGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAAAT
* ** * *
23375 AAGG-CAAAGAAAAGATTTCCATGCAAAAG
131 AAGGTGAAAG-AAAGGCTTCCTTGCAAAAC
* * * * * * ** * ** *
23404 AAAACCATCAATATCATGTATCATGATG-AGGAGAATGTGTTTATACTGCTTAATCACGAAATGA
1 CAAAGCATCAATATCTTGTATCCTAATGAAAG-GAATGTGTTTATGGTGCCTAATCTTGAAAAGA
* * *
23468 ATGAGGA-TCCTTACTAGAATCCATGTTTGTCTCATTT
65 ATGGGGACT-CTTACGAGAATCAATGTTTGTCTCATTT
23505 GAGGAATGAA
Statistics
Matches: 2062, Mismatches: 689, Indels: 376
0.66 0.22 0.12
Matches are distributed among these distances:
145 4 0.00
146 74 0.04
147 18 0.01
148 3 0.00
149 7 0.00
151 2 0.00
154 1 0.00
155 3 0.00
156 21 0.01
157 180 0.09
158 920 0.45
159 773 0.37
160 27 0.01
161 20 0.01
162 9 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (159 bp):
CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTATGGTGCCTAATCTTGAAAAGAA
TGGGGACTCTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTATGAAAAAT
AAGGTGAAAGAAAGGCTTCCTTGCAAAAC
Found at i:21813 original size:475 final size:476
Alignment explanation
Indices: 20311--23587 Score: 4810
Period size: 475 Copynumber: 6.9 Consensus size: 476
20301 CAGTAGAAAG
* * * *
20311 ATTGGGGATTCGTATGAGTATTCATGTTTGCCTTCTTTAAGTGACAAACTTGGATTCTATCACTA
1 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
* * * *
20376 ACGGTAGAAAGAAAGGCTTCTATTGCTACCGCAAAGCATTAATGTCTTGTGTCCTAATGAAAGGA
66 ACGGTAGAAAGAAAGGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGA
* *
20441 ATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGGGTATCAATGCATGTCTCAT
131 ATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCAT
* * * *
20506 TTAAAGCACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAAC
196 TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAC
* * * *
20571 CATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCCTAATCACGAAATGAATGAAG
261 CATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAG
* * *
20636 ATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGTG
326 ATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAATAGGTG
* * * * * * *
20700 GGAAGAAAGTGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTAAGATAAGACTATGTT
390 GGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTT
*
20765 TATGCTGCCTAATCCTGAAAAG
455 TATGCTGCCTAATCCTGAAAAA
*
20787 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTACGTGACAAACTTTGATTCTATCAATA
1 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
* *
20852 ACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAGGCATTAATGTCTT-TATCCTAATGAAAGGA
66 ACGGTAGAAAGAAAGGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGA
* **
20916 ATGTGTTTTTAGTTCCCATTCTTGAAAAGAATGGGGACTTTTATAAGAATCAATGCATGTCTCAT
131 ATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCAT
* *
20981 TTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGACTTCCATGCAAAAGAAAAC
196 TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAC
* **
21046 CATCAATATCATGTATCCTGATGAGGAGAATGTGATTATAGTGCCTAATCTTGAAATGAATGAAG
261 CATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAG
* **
21111 ATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTTCAAAAATAGGTGG
326 ATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATAGGTGG
* * * * *
21176 GAA-AAAGTGTATCTTGCAAAACCAAAGCATCAATATCCTGTATCCTTATAAGAAAAATATGTTT
391 GAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTT
* *
21240 ATGGTGCCTAACCCT-AAAAA
456 ATGCTGCCTAATCCTGAAAAA
** * * *
21260 GAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAT
1 -ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAAT
*
21325 AACGGTAGAAAGAAAGGCTTCCCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGG
65 AACGGTAGAAAGAAAGGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGG
* * *
21390 AATGTGTTTTTGGTGCCCATTCTTGAAAAGATTGGGGACTCTTACGAGAATCAATGCATGTCTCA
130 AATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCA
* * * *
21455 TTTAAAGTACAAACTTTGATTTTATGGAAAGTAAGGTAAAG-AAAGATTTCTATGCAAAAGAAAA
195 TTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * *
21519 CCATCAATATCATGTATCCTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAATGAA
260 CCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAA
* * * * *
21584 AATCCTTTCTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAAAATTGGT
325 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAATAGGT
* * * * *
21648 GGGAAGAAAGAGTTTCGTGCGAAACCAAAGCATCACTATCATGTATCCTTATGAGAAGACTATGT
389 GGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGT
21713 TTATGCTGCCTAATCCTGAAAAA
454 TTATGCTGCCTAATCCTGAAAAA
21736 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
1 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
* * *
21801 ACGGTAGAAAGAAAGGC-T-TC-T---A--TC--A--A-TAAGTGTCTT-TGTCCTAATGAATGG
66 ACGGTAGAAAGAAAGGCTTCTCTTGCGACCCCAAAGCATTAA-TGTCTTGTATCCTAATGAAAGG
* *
21852 AATGTGTTTTTGGTTCCCATTCTTGAAAAAAATGGGGACTTTTAGGAGAATCAATGCATGTCTCA
130 AATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCA
21917 TTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
195 TTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * *
21982 CCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCTTAATCACGAAATGAATGAG
260 CCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAA
* *
22047 GATCCTTACTAGAATCCATGTTTGTCTCATTTGATGAATGAACTTATACTTTAAAAAAATAGGTG
325 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATAGGTG
* *
22112 GGAAGAAAGCGCATCTTGCGAAACCAAAGCTTCAATATCATGTATCCTTATGAGAAAACTATGTT
390 GGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTT
*
22177 TATGGTGCCTAATCCTGAAAAGA
455 TATGCTGCCTAATCCTGAAAA-A
* * * * * * *
22200 A-AGGGGATTAGTATGAGTATTCTTGATTGTCTTATTTTAGAGACAAACTTTAATTCTATCAATA
1 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
* *
22264 ACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAA-CATTAATGTCTTGTATCCTAATGAAAGGA
66 ACGGTAGAAAGAAAGGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGA
* *** * * *
22328 ATGTGTTTTTGGTTCCCAATCTTTTCAAGAATAGGGACTTTTATGAGAATCAATGCATGTGTCAT
131 ATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCAT
*
22393 TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAAC
196 TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAC
* * * * * *
22458 CATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGAAG
261 CATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAG
* *
22523 ATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGG
326 ATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATAGGTGG
* *
22588 GAAGAAAGCGTATCTTGCGAAACCAAAGCCTCAATATCATGTATCTTTATGAGAAAACTATGTTT
391 GAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTT
* * *
22653 AAGGTGTCTAATCCT-AAAAA
456 ATGCTGCCTAATCCTGAAAAA
** * * * *
22673 GAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAAT
1 -ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAAT
* ** *
22738 AACGGTAGGAAGTAAA-GCTTCTCTTGTAACCCTAAAGCATTAATGTCTTGTATCCTAATGAAAG
65 AACGGTAGAAAG-AAAGGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
* * *
22802 GAATGTGTTTTTGGTTCCCAATCTTGGAAAG-ATAAGGGACTTTTACGAGAATCAATGCATGTCT
129 GAATGTGTTTTTGGTTCCCATTCTTGAAAAGAAT-GGGGACTTTTACGAGAATCAATGCATGTCT
* * * *
22866 CATTTGAAGTACAAACTTTGATTTTACGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
193 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * *
22931 AACCATAAATATCATGTATCCTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAATG
258 AACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATG
* * * * *
22996 AAGATCCTTTCTAGAATCCATGTTTGTCTCATTTGAGGTAA-GAACTTAAAATTTAGAAATATTG
323 AAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTAGAAAAATAG
* * * * * * *
23060 GTGGGAAGAAAGTGTTTCGTGCGTAACCAAAGCATCACTATCATGTATCCTTAAGAGAAGACTAT
387 GTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTAT
*
23125 GTTTATGCTGCCTAATCCTGAAAAG
452 GTTTATGCTGCCTAATCCTGAAAAA
23150 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
1 ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
23215 ACGGTAGAAAGAAAGGCTTCTCTT-CAGACCCCAAAGCATTAATGTCTT-TATCCTAATGAAAGG
66 ACGGTAGAAAGAAAGGCTTCTCTTGC-GACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGG
* *
23278 AATGTGTTTTTGGTTCCCATTCTTGAGAAGAATGGGGACTTTTAGGAGAATCAATGCATGTCTCA
130 AATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCA
23343 TTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
195 TTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * *
23408 CCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCTTAATCACGAAATGAATGAG
260 CCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAA
*
23473 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAAAAAAATAGGTG
325 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATAGGTG
*
23538 GGAAGAAAGCGTATCTTGCGAAACCAAAGCTTCAATATCATGTATCCTTA
390 GGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
23588 CAAAATGTGC
Statistics
Matches: 2517, Mismatches: 250, Indels: 69
0.89 0.09 0.02
Matches are distributed among these distances:
462 116 0.05
463 291 0.12
464 3 0.00
465 3 0.00
466 1 0.00
467 1 0.00
469 2 0.00
471 1 0.00
472 1 0.00
473 7 0.00
474 323 0.13
475 1223 0.49
476 539 0.21
477 6 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
ATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAATA
ACGGTAGAAAGAAAGGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAGGA
ATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCAT
TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAAC
CATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAG
ATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTAGAAAAATAGGTGG
GAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTT
ATGCTGCCTAATCCTGAAAAA
Found at i:25818 original size:45 final size:47
Alignment explanation
Indices: 25769--25863 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 47
25759 TTTCTTTTCC
* * *
25769 TCACTGTTCATGTATCG-ATACATCACTGTTCA-CACTATTCACGTA
1 TCACTATTCATGTATCGTAAAAATCACTGTTCATCACTATTCACGTA
*
25814 TCACTATTCATGTATCGTTAAAAATCACTGTTCATCACTATTCATGTA
1 TCACTATTCATGTATCG-TAAAAATCACTGTTCATCACTATTCACGTA
25862 TC
1 TC
25864 GATACATCAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
45 16 0.37
47 13 0.30
48 14 0.33
ACGTcount: A:0.28, C:0.24, G:0.09, T:0.38
Consensus pattern (47 bp):
TCACTATTCATGTATCGTAAAAATCACTGTTCATCACTATTCACGTA
Found at i:27063 original size:42 final size:40
Alignment explanation
Indices: 26995--27115 Score: 145
Period size: 42 Copynumber: 2.9 Consensus size: 40
26985 TCACTTTTCC
* * *
26995 ATCT-TCTTCTCTCCTCCTCCTGTCATCCCTCTTCTCAGTATT
1 ATCTCTCTTGTCT-CTCCTCCTATCATCCCTCTTCTC--TACT
27037 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCCTATCTCTACT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCT-CT-TCTCTACT
* *
27079 ATCTCTCCTGTCTCTCCTCCTATCATCCCTCCTCTCT
1 ATCTCTCTTGTCTCTCCTCCTATCATCCCTCTTCTCT
27116 CTTCTTTTTC
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
40 5 0.07
41 1 0.01
42 52 0.73
43 9 0.13
44 4 0.06
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.43
Consensus pattern (40 bp):
ATCTCTCTTGTCTCTCCTCCTATCATCCCTCTTCTCTACT
Found at i:27117 original size:42 final size:42
Alignment explanation
Indices: 27008--27117 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
26998 TTCTTCTCTC
* * ** * *
27008 CTCCTCCTGTCATCCCTCTTCTCAGTATTATCTCTCTTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
27050 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
27092 CTCCTCCTATCATCCCTCCTCTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCT
27118 TCTTTTTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.10, C:0.45, G:0.04, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:29631 original size:476 final size:476
Alignment explanation
Indices: 28736--32697 Score: 5589
Period size: 476 Copynumber: 8.4 Consensus size: 476
28726 CATCACTACT
* * * * * * * *
28736 TTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAGAAAGCGTATCTTGCG
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* * *
28801 AAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
** * * *
28866 AGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAA
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
* *
28931 TAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCTAAAGCATTAATGTCTTGTATCCTAATGAAAG
196 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
*
28996 GAATGTGTTTTTGGTTCCCAATCTTGGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTC
261 GAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTC
*
29061 ATTTAAAGTACAAACTTTGATTTTACGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
326 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
** *
29126 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACGGTGCCTAATCATGAAATGAATGA
391 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGA
29191 AGATCCTTACTAGAATCCATG
456 AGATCCTTACTAGAATCCATG
* * * *
29212 TTCGTCTCATTTGTGGTGGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTATTGCG
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* * *
29277 AAACCAAAGCGTCACTGTCATGTATCCTTATGAGAAAACTAAGTTTATGCTACCTAATCCTGAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
* *
29342 AGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACGAACTTTGATTCTATCAA
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
* * * *
29407 TTACAGTAGAAAGAAAAGCTTCTCCTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
196 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
** *
29472 GAATAAGGTTTTGGTTCTCC-ATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCT
261 GAATGTGTTTTTGGTTC-CCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCT
29536 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
325 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
*
29601 AACCATAAATATAATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATG
390 AACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATG
29666 AAGATCCTTACTAGAATCCATG
455 AAGATCCTTACTAGAATCCATG
*
29688 TTTGTCTCATTTGAGGTAGGAACTTAAAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* *
29753 AAACCAAAGCGTCACTATCATGTATCCTTACGAGAAGACTATGTTTATGCTGCCTAATCCTGAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
*
29818 AGATTGAGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
* * *
29883 TAACGGTAGATAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATTCTAATGTAAG
196 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
* *
29948 GAATGTGTTTTTGGTTCCCAATC-TTGAAAAGATCGGGGACTTTTACGAGAATCAATGCAAGTCT
261 GAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACGAGAATCAATGCATGTCT
*
30012 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
325 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
* * *
30077 AACCATAAATATCATTTAGCCTAATGAGGATAATGTGTTTATAGTGCTTAATCACGAAATGAATG
390 AACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATG
30142 AAGATCCTTACTAGAATCCATG
455 AAGATCCTTACTAGAATCCATG
* *
30164 TTTGTTTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGAGGGAAGAAAGTGTTTCTTGCG
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* * * *
30229 AAACCAAA-----AC-A--A--TA-----ACG-GCAGAA--A-G---A-AC-G-GT-A----G-A
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAG-AAAACTATGTTTATGCTGCCTAATCCTGAA
* * ** * *
30263 AAGATTGGGGATAAGTATGAGTATTCATGTTCACCTTCTTTAAGTGACAAACTTGGATTCTATCA
130 AAGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCA
* * *
30328 ATAACGGTAGAAAGAAAGGCTTCTATTGCT-ACCGCAAAGCATTAATGTCTTGTATCCTAATGAA
195 ATAACGGTAGAAAGAAAAGCTTCTCTTG-TGACCCCAAAGCATTAATGTCTTGTATCCTAATGAA
* * * *
30392 AGGAATGTGTTTTTGGTTCCCATTC-TTGAAAAGAATGGAGACTTTTACGGGAATCAATGCATGT
259 AGGAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACGAGAATCAATGCATGT
* * *
30456 TTCATTTAAATTACAAACTTTGATTTTAAGGAAAATAAGGCTAAA-AAAAGATTTCAATACAAAA
323 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC-AAAGAAAAGATTTCCATACAAAA
* * ** * *
30520 GAAAACCATAAATATAATTAATCCTAACAAGGAGAATGTGTTTATAATGCCTAATCCCGAAATGA
387 GAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGA
*
30585 ATGAAGATGCTTACTAGAATCCATG
452 ATGAAGATCCTTACTAGAATCCATG
* *
30610 CTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAGGAAAGTGTTTCTTGCG
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* *
30675 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCTAAACCTGAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
* *
30740 AGATTGGGGATTAGTATGAGTATTCATGTTGGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
* *
30805 TAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAGGCATTAATGTCTT-TATCCTAATGAAAG
196 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
* * * * *
30869 GAATGTGTTTTTAGTTCCCATTC-TTGAAAAGAATGGGGACTTTTATGAGAATCAGTGCATGTCT
261 GAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACGAGAATCAATGCATGTCT
* * * *
30933 CATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGACAAAGAAAAGACTTCCATGCAAAAGAA
325 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
* * * * *
30998 AACCATCAATATCATGTATCCTGATGAGGAGAATGTGATTATAGTGCCTAATCTCGAAATGAATG
390 AACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATG
31063 AAGATCCTTACTAGAATCCATG
455 AAGATCCTTACTAGAATCCATG
* * * * * * * * * * *
31085 TTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAGAAAGCGTATCCTGCA
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* * * * * * *
31150 AAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGCTTATGGTGCCTAACCCTAAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
** * * * *
31215 AGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTATGAGACAGACTTTGATTCTATCAA
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
* * * *
31280 TAACGGTAGAAAGAAAGGCTTCGCTTGCGACCCCAAAGCATCAATGTCTTGTATCCTAATGAAAG
196 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
* * * * *
31345 GAATGTGTTTTTGGTACCCATTC-TTGAAAAGAATAGGGACTCTTACGAGAATCAATGCATGTCT
261 GAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACGAGAATCAATGCATGTCT
* * * *
31409 CATTTAAAGTACAAACTTTGATTTTATGGAAAGTAAGGTAAAG-AAAGATTTCCATGCAAAAGAA
325 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
* * * * * * *
31473 AACCATCAATATCATGTATCTTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAATG
390 AACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATG
*
31538 AAGATCCTTTCTAGAATCCATG
455 AAGATCCTTACTAGAATCCATG
* * * * * *
31560 TTTGTCTTATTTGAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGGAAGAAAGCGTTTCATGCT
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* * *
31625 AAACCAAAGCATCACTATCATTTATCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTGAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
* * * *
31690 AGAATGGGGATTAGTATGAGCATTCTTGTTTTCCTTATCTAAGTGACAAACTTTGATTCTATCAA
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
* * *
31755 TAACGGTGGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAATGTCTT-TATCATAATGAAAG
196 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
* * * *
31819 GAATGTGTTTTTGGTTCCCATTC-TTGAAAAGAATGGGGACTTTTACGAGAATTAATGCATGACT
261 GAATGTGTTTTTGGTTCCCAATCTTTG-AAAGATTGGGGACTTTTACGAGAATCAATGCATGTCT
* *
31883 CATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
325 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
* * * * *
31948 AACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCCTAATCACGAAATGAATG
390 AACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATG
32013 AAGATCCTTACTAGAATCCATG
455 AAGATCCTTACTAGAATCCATG
* * * * * * * **
32035 TTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAGAAAGCGTATCTTAAG
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
* * * * * * *
32100 AAACCAAAGCTTCAATATCATATATCCTTGTCAAAAAACTATGTTTATGGTGCCTAATCCTGAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
** * * *
32165 AGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAA
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
* * * * *
32230 TAACGGTAGGAAGAAAAGCTTCTCTTGTCACCCCAAAACATTAATGTCTTCTATCCTAAAGAAAG
196 TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
* ** * *
32295 GAATGTGTTTTTGGTTCTCAATCTTTTCAAGATTAGGGACTTTTATGAGAATCAATGCATGTCTC
261 GAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTC
32360 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
326 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
* * * *
32425 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATTGA
391 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGA
*
32490 AGATCCTTACTGGAATCCATG
456 AGATCCTTACTAGAATCCATG
* * *
32511 TTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCC
1 TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
*
32576 AAACCAAAGCGTCACTATCATGTATCCTTAT-AGAAGACTATGTTTATGCTGCCTAATCCTGAAA
66 AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
*
32640 AGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATT
131 AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATT
32698 TTATGGAAAG
Statistics
Matches: 3117, Mismatches: 326, Indels: 87
0.88 0.09 0.02
Matches are distributed among these distances:
446 378 0.12
447 5 0.00
451 3 0.00
452 2 0.00
453 1 0.00
454 2 0.00
455 1 0.00
456 2 0.00
458 1 0.00
459 1 0.00
460 1 0.00
461 9 0.00
462 1 0.00
463 1 0.00
464 1 0.00
466 2 0.00
467 1 0.00
468 2 0.00
469 1 0.00
470 2 0.00
471 3 0.00
474 114 0.04
475 1134 0.36
476 1445 0.46
477 4 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
TTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCG
AAACCAAAGCGTCACTATCATGTATCCTTATGAGAAAACTATGTTTATGCTGCCTAATCCTGAAA
AGATTGGGGATTAGTATGAGTATTCTTGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATCAA
TAACGGTAGAAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG
GAATGTGTTTTTGGTTCCCAATCTTTGAAAGATTGGGGACTTTTACGAGAATCAATGCATGTCTC
ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGA
AGATCCTTACTAGAATCCATG
Found at i:31156 original size:475 final size:476
Alignment explanation
Indices: 30262--32697 Score: 3486
Period size: 475 Copynumber: 5.1 Consensus size: 476
30252 AGAACGGTAG
* * ** * *
30262 AAAGATTGGGGATAAGTATGAGTATTCATGTTCACCTTCTTTAAGTGACAAACTTGGATTCTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATC
* *
30327 AATAACGGTAGAAAGAAAGGCTTCTATTGCT-ACCGCAAAGCATTAATGTCTTGTATCCTAATGA
66 AATAACGGTAGAAAGAAAGGCTTCTCTTG-TGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
* *
30391 AAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGAGACTTTTACGGGAATCAATGCATGT
130 AAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGT
* * * *
30456 TTCATTTAAATTACAAACTTTGATTTTAAGGAAAATAAGGCTAAA-AAAAGATTTCAATACAAAA
195 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC-AAAGAAAAGATTTCCATGCAAAA
* * * ** * *
30520 GAAAACCATAAATATAAT-TAATCCTAACAAGGAGAATGTGTTTATAATGCCTAATCCCGAAATG
259 GAAAACCATCAATATCATGT-ATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATG
* * *
30584 AATGAAGATGCTTACTAGAATCCATGCTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAA
323 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTAGAAAAA
* * * * *
30649 TTGGTGGGAGGAAAGTGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGAC
388 TTGGTGGGAAGAAAGCGTTTCCTGCAAAACCAAAGCATCACTATCATGTATCCTTATGAGAAGAC
*
30714 TATGTTTATGCTGCCTAAACCTGA
453 TATGTTTATGCTGCCTAATCCTGA
* *
30738 AAAGATTGGGGATTAGTATGAGTATTCATGTTGGCCTTATTTAAGTGACAAACTTTGATTCTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATC
*
30803 AATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAGGCATTAATGTCTT-TATCCTAATGAA
66 AATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAA
* * *
30867 AGGAATGTGTTTTTAGTTCCCATTCTTGAAAAGAATGGGGACTTTTATGAGAATCAGTGCATGTC
131 AGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTC
* * *
30932 TCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGACAAAGAAAAGACTTCCATGCAAAAGA
196 TCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
30997 AAACCATCAATATCATGTATCCTGATGAGGAGAATGTGATTATAGTGCCTAATCTCGAAATGAAT
261 AAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAAT
* * * * * *
31062 GAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAATAG
326 GAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTAGAAAAATTG
* * * *
31127 GTGGGAAGAAAGCGTATCCTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATAT
391 GTGGGAAGAAAGCGTTTCCTGCAAAACCAAAGCATCACTATCATGTATCCTTATGAGAAGACTAT
* * * *
31192 GCTTATGGTGCCTAACCCTAA
456 GTTTATGCTGCCTAATCCTGA
* * * * * *
31213 AAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTATGAGACAGACTTTGATTCTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATC
* * *
31278 AATAACGGTAGAAAGAAAGGCTTCGCTTGCGACCCCAAAGCATCAATGTCTTGTATCCTAATGAA
66 AATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAA
* * *
31343 AGGAATGTGTTTTTGGTACCCATTCTTGAAAAGAATAGGGACTCTTACGAGAATCAATGCATGTC
131 AGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTC
* * *
31408 TCATTTAAAGTACAAACTTTGATTTTATGGAAAGTAAGGTAAAG-AAAGATTTCCATGCAAAAGA
196 TCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * *
31472 AAACCATCAATATCATGTATCTTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAAT
261 AAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAAT
* * *
31537 GAAGATCCTTTCTAGAATCCATGTTTGTCTTATTTGAGGTAA-GAACTTAAAATTTAGAAAAATT
326 GAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AAGGAACTTAGAATTTAGAAAAATT
* * *
31601 GGTGGGAAGAAAGCGTTTCATGCTAAACCAAAGCATCACTATCATTTATCCTTATGAGAAGACTA
390 GGTGGGAAGAAAGCGTTTCCTGCAAAACCAAAGCATCACTATCATGTATCCTTATGAGAAGACTA
31666 TGTTTATGCTGCCTAATCCTGA
455 TGTTTATGCTGCCTAATCCTGA
* * * *
31688 AAAGAATGGGGATTAGTATGAGCATTCTTGTTTTCCTTATCTAAGTGACAAACTTTGATTCTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATC
* *
31753 AATAACGGTGGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAATGTCTT-TATCATAATGAA
66 AATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAA
* *
31817 AGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATTAATGCATGAC
131 AGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTC
*
31882 TCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
196 TCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* *
31947 AAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCCTAATCACGAAATGAAT
261 AAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAAT
* * * *
32012 GAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTG
326 GAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTAGAAAAATTG
* ** * * * * * * *
32077 GTGGGAAGAAAGCGTAT-CTTAAGAAACCAAAGCTTCAATATCATATATCCTTGTCAAAAAACTA
391 GTGGGAAGAAAGCGTTTCCTGCA-AAACCAAAGCATCACTATCATGTATCCTTATGAGAAGACTA
*
32141 TGTTTATGGTGCCTAATCCTGA
455 TGTTTATGCTGCCTAATCCTGA
* * * * *
32163 AAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGACAAACTTTGATTCTATC
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATC
* * * * * *
32228 AATAACGGTAGGAAGAAAAGCTTCTCTTGTCACCCCAAAACATTAATGTCTTCTATCCTAAAGAA
66 AATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAA
* * *** * * *
32293 AGGAATGTGTTTTTGGTTCTCAATCTTTTCAAGATTAGGGACTTTTATGAGAATCAATGCATGTC
131 AGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTC
*
32358 TCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGA
196 TCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
* * * * * * *
32423 AAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATT
261 AAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAAT
* * * *
32488 GAAGATCCTTACTGGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTG
326 GAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTAGAAAAATTG
* * * *
32553 GTGGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTAT-AGAAGACTAT
391 GTGGGAAGAAAGCGTTTCCTGCAAAACCAAAGCATCACTATCATGTATCCTTATGAGAAGACTAT
32617 GTTTATGCTGCCTAATCCTGA
456 GTTTATGCTGCCTAATCCTGA
*
32638 AAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATT
1 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATT
32698 TTATGGAAAG
Statistics
Matches: 1747, Mismatches: 203, Indels: 21
0.89 0.10 0.01
Matches are distributed among these distances:
474 117 0.07
475 1124 0.64
476 505 0.29
477 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
AAAGAATGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTATC
AATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAATGTCTTGTATCCTAATGAA
AGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTC
TCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
AAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAAT
GAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTAGAAAAATTG
GTGGGAAGAAAGCGTTTCCTGCAAAACCAAAGCATCACTATCATGTATCCTTATGAGAAGACTAT
GTTTATGCTGCCTAATCCTGA
Found at i:31720 original size:158 final size:157
Alignment explanation
Indices: 30600--41854 Score: 2642
Period size: 158 Copynumber: 71.1 Consensus size: 157
30590 GATGCTTACT
* * ** * *
30600 AGAATCCATGCTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAGGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * *
30665 GTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* * *
30730 AAACCTGAAAAGATTGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * * *
30758 AGTATTCATGTTGGCCTTATTT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGTAGAAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** ** * * * * * * *
30820 AGGCTTCTCTTGTGACCCCAAGGCATTAATGTC-TTTATCCTAATGA-AAGGAATGTGTTTTTAG
63 AGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGG
* * * *
30883 TTCCCATTCTTGAAAAGAATGGGGACTT-TTATG
125 TGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * ***
30916 AGAA-TCAGTGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAG-ACAAAGAAA
1 AGAATTCA-TGTTTGTCTCATTTGAGGTACAAACTTAGAATTTA-GAAAAATAGGTGGGAAG-AA
* * ** * * * * * * *
30979 AGACTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAATGTGATTATAGTG
63 AG-GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
* ** **
31044 CCTAAT-CTCGAAATGAATGAAGATCCTTACT-
127 CCTAATCCT-GAAAAGAATGGGGATTATTA-TG
* * * ** * * *
31075 AGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * *
31140 GTATCCTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAAATATGCTTATGGTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* * * *
31205 AACCCTAAAAAGAAAGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
31233 AGTATTCTTGTTTGTCTTATTT-ATGAG-ACAGACTTTG-ATTCTATCAATAA-CGGTAGAAAGA
1 AGAATTCATGTTTGTCTCATTTGA-G-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGA
* * * ** * * * *
31294 AAGGCTTCGCTTGCGACCCCAAAGCATCAATGTC-TTGTATCCTAATGA-AAGGAATGTGTTTTT
62 AAGG-TT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTAT
* * * * * * * *
31357 GGTACCCATTCTTGAAAAGAATAGGGACTCTTACG
123 GGTGCCTAATCCTGAAAAGAATGGGGATTATTATG
** * * * * * * *
31392 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAGTAAGGT--AAAGAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTA-GAAAAAT-AGGTGGGAAGAA
* ** * * ** **
31454 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTAT-CTTGATGAGGGGAATATGTTTACAGT
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTT-ATGAGAAGAATATGTTTATGGT
* ** *
31518 GCCTAATCAC-GAAATGAATGAAGATCCT-TTCT-
126 GCCTAATC-CTGAAAAGAATGGGGAT--TATTATG
* * * *
31550 AGAATCCATGTTTGTCTTATTTGAGGTA-AGAACTTAAAATTTAGAAAAATTGGTGGGAAGAAAG
1 AGAATTCATGTTTGTCTCATTTGAGGTACA-AACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG
* * * *
31614 CGTTTCATGCTAAACCAAAGCATCACTATCATTTATCCTTATGAGAAGACTATGTTTATGCTGCC
65 -GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCC
*
31679 TAATCCTGAAAAGAATGGGGATTAGTATG
129 TAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
31708 AGCATTCTTGTTT-TCCTTATCT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGTGGAAAGA
1 AGAATTCATGTTTGT-CTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGA
* ** ** * * * * * *
31769 AAGGCTTCTCTTGTGACCCCAAAGCATTAATGTC-TTTATCATAATGA-AAGGAATGTGTTTTTG
62 AAGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATG
* * * * *
31832 GTTCCCATTCTTGAAAAGAATGGGGACTT-TTACG
124 GTGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
* ** * * * * * * * **
31866 AGAATTAATGCATGACTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAG-GCAAAGAAAA
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AAA
* ** * * * * * * **
31930 GATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGC
64 GGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGC
* ** **
31995 CTAATCAC-GAAATGAATGAAGATCCTTACT-
128 CTAATC-CTGAAAAGAATGGGGATTATTA-TG
* * ** * * * *
32025 AGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* ** * * * * *
32090 GTATC-TTAAGAAACCAAAGCTTCAATATCATATATCCTTGTCA-AAAAACTATGTTTATGGTGC
65 GTTTCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGC
* *
32153 CTAATCCTGAAAAGAAAGGGGATTAGTATG
128 CTAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * *
32183 AGTATTCTTGTTTGTCTTATTTTAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAA
1 AGAATTCATGTTTGTCTCATTTGAG-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-A
* * ** * * * * * * *
32245 AAGCTTCTCTTGTC-ACCCCAAAACATTAATGTC-TTCTATCCTAAAGA-AAGGAATGTGTTTTT
62 AAGGTT-TCATG-CAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTAT
* * *** * *
32307 GGT-TCTCAATCTTTTCAAGATTAGGGACTT-TTATG
123 GGTGCCT-AATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
32342 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * *
32405 AGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * * ** **
32470 CCTAATTATGAAATGATTGAAGATCCTTACTG
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** * *
32502 -GAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * *
32566 GTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTAT-AGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* *
32630 AATCCTGAAAAGATTGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * *
32658 AGTATTCATGTTTGCCTTATTT-AAGTGACAAACTTTGATTTTATGGAAAGTAAGGT--AAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATTTA-GAAAAAT-AGGTGGGAAGAA
* ** * * ** * **
32720 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTAT-CTTGATGAGGGGAATGTGTTTATACT
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTT-ATGAGAAGAATATGTTTATGGT
* * * *** **
32784 ACCTAATCCCGAAATGAATGAATATCCTTACT-
126 GCCTAATCCTGAAAAGAATGGGGATTATTA-TG
* ** * * * *
32816 AGAA-TCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAGGAAAG
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG
* * * *
32880 CGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGC
65 -GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGC
* *
32944 CTAATCCTGAAAAAAAT-GGGATTAGTATG
128 CTAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * *
32973 AGTATTCTTGTTTGTCTTATTTTAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAA
1 AGAATTCATGTTTGTCTCATTTGAG-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-A
* * ** ** * * * * * * *
33035 AAGCTTCTCTTGTGACCCCAAAACATTAATGTC-TTCTATCCTAAAGA-AAGGAATGTGTTTTTG
62 AAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTATG
* * *** * *
33098 GT-TCTCAATCTTCTCAAGATTAGGGACTT-TTATG
124 GTGCCT-AATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
33132 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * *
33195 AGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * * ** **
33260 CCTAATTATGAAATGATTGAAGATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** * * *
33291 AGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGTCGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * *
33356 GTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTAT-AGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* *
33420 AATCCTGAAAAGATTGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * *
33448 AGTATTCATGTTTGCCTTATTT-AAGTGACAAACTTTGATTTTATGGAAAGTAAGGT--AAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATTTA-GAAAAAT-AGGTGGGAAGAA
* ** * * ** **
33510 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTAT-CTTGATGAGGGGAATATGTTTACAGT
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTT-ATGAGAAGAATATGTTTATGGT
* ** *
33574 GCCTAATCAC-GAAATGAATGAAGATCCT-TTCT-
126 GCCTAATC-CTGAAAAGAATGGGGAT--TATTATG
* * * * *
33606 AGAATCCATGTTTGTCTTATTTAAGGTA-AGAACTTAAAATTTAGAAAAATTGGTGGGAAGAAAG
1 AGAATTCATGTTTGTCTCATTTGAGGTACA-AACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG
* * * *
33670 CGTTTCATGCTAAACCAAAGCATCACTATCATTTATCCTTATGAGAAGACTATGTTTATGCTGCC
65 -GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCC
*
33735 TAATCCTGAAAAGAATGGGGATTAGTATG
129 TAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
33764 AGCATTCTTGTTT-TCCTTATCT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGTGGAAAGA
1 AGAATTCATGTTTGT-CTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGA
* ** ** * * * * * *
33825 AAGGCTTCTCTTGTGACCCCAAAGCATTAATGTC-TTTATCATAATGA-AAGGAATGTGTTTTTG
62 AAGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATG
* * * *
33888 GTTCCCATTCTTGAAAAGAATGGGGACTT-TTACT-
124 GTGCCTAATCCTGAAAAGAATGGGGA-TTATTA-TG
** * * * * * * **
33922 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* ** * * * * * * ** *
33985 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTA
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
* * *** **
34050 CCTAATCCCGAAATGAATGAATATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** * * * *
34081 AGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAGGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * *
34146 GTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTATGTTTATGGTGCC
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGCC
* *
34210 TAATCCTGAAAAAAAT-GGGATTAGTATG
129 TAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * *
34238 AGTATTCTTGTTTGTCTTATTTTAGAGG--CAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGA
1 AGAATTCATGTTTGTCTCA-TTT-GAGGTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGA
* * * ** * * * * *
34299 AAAGTTCTCTTGCGACCCCAAAGCATTAATGTC-TTGTATCCTAATGA-AAGGAATGTGTTTTTG
62 AAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTATG
* * * *** * *
34362 GTTCCCAATCTTTTCAAGATTAGGGACTT-TTATG
124 GTGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
34396 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * * *
34459 AGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * ** *
34524 CCTAATTATGAAATGAATGAAGATTCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* ** *
34555 AGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * *
34620 GTTTCTTGCAAAACCAAAGCGTCACTATCATGTT-TCCTTATGAGAAGACTATGTTTATGCTGCC
65 GTTTCATGCAAAACCAAAGCATCAATATCAT-TTATCCTTATGAGAAGAATATGTTTATGGTGCC
* *
34684 TAATCCTGAAAAGATTGGGGATTAGTATG
129 TAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * * *
34713 AGTATTCATGTTTGCCTTATTT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGTAGAAAGGA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** ** * * * * * * * *
34775 AGGCTTCTCTTGTGACCCCAAGGCATTACTGTC-TTTATCCTAATGA-AAGGAATGTGTTTTTAG
63 AGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGG
* * * *
34838 TTCCCATTCTTGAAAAGAATGGGGACTT-TTATG
125 TGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
34871 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATA--AGCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* ** * * * * * **
34933 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATATGTTTATACTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
* ** **
34998 CCTAATCAC-GAAATGAATGAAGATCCTTACT-
127 CCTAATC-CTGAAAAGAATGGGGATTATTA-TG
* * * ** * * * *
35029 AGAATCCATGTTTATCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* ** * * * * * **
35094 GTATC-TTAAGAAACCAAAGCTTCATTATCATATATCCTTGTGA-AAAAACTATGTGCATGGTGC
65 GTTTCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGC
* * *
35157 CTAATCCTGAAAAGAAAGGGGATTAGTATT
128 CTAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
35187 AGTATTCTTATTTGTCTTATTTTAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAA
1 AGAATTCATGTTTGTCTCATTTGAG-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-A
* * ** ** * * * * * * *
35249 AAGCTTCTCTTGTGACCCCAAAACATTAATGTC-TTCTATCCTAAAGA-AAGGAATGTGTTTTTG
62 AAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTATG
* * *** * *
35312 GT-TCTCAATCTTTTCAAGATTAGGGACTT-TTATG
124 GTGCCT-AATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
35346 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * *
35409 AGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * * ** **
35474 CCTAATTATGAAATGATTGAAGATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** * *
35505 AGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * * *
35570 GTTTCTTGCCAAACCAAAGCGTCATTATCATGTATCCTTATGAGAAGACTCTGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
*
35635 AATCCTGAAAAGAATGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * * * *
35663 AGTATTCTTGTTTGCCTTATCT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGTAGAAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** ** * * * * * * *
35725 AGGCTTCTCTTGTGACCCCAAGGCATTAATGTC-TTTATCCTAATGA-AAGGAATGTGTTTTTAG
63 AGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGG
* * * *
35788 TTCCCATTCTTGAAAAGAATGGGGACTT-TTATG
125 TGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
35821 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATA--AGCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* ** * * * * * **
35883 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATATGTTTATACTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
* ** **
35948 CCTAATCAC-GAAATGAATGAAGATCCTTACT-
127 CCTAATC-CTGAAAAGAATGGGGATTATTA-TG
* * ** * * * *
35979 AGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* ** * * * * * **
36044 GTATC-TTAAGAAACCAAAGCTTCATTATCATATATCCTTGTGA-AAAAACTATGTGCATGGTGC
65 GTTTCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGC
* * *
36107 CTAATCCTGAAAAGAAAGGGGATTAGTATT
128 CTAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
36137 AGTATTCTTATTTGTCTTATTTTAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAA
1 AGAATTCATGTTTGTCTCATTTGAG-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-A
* * ** ** * * * * * * *
36199 AAGCTTCTCTTGTGACCCCAAAACATTAATGTC-TTCTATCCTAAAGA-AAGGAATGTGTTTTTG
62 AAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTATG
* * *** * *
36262 GT-TCTCAATCTTTTCAAGATTAGGGACTT-TTATG
124 GTGCCT-AATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
36296 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * *
36359 AGATTTCCATACAAAAGAAAATCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * * ** **
36424 CCTAATTATGAAATGATTGAAGATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** * *
36455 AGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * *
36520 GTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTAT-AGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* *
36584 AATCCTGAAAAGATTGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * *
36612 AGTATTCATGTTTGCCTTATTT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGTGGAAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** ** * * * * *
36674 AGGCTTCTCTTG-AGACCCCAAAGCATTGATGTC-TTTATCATAATGA-AAGGAATGTGTTTTTG
63 AGG-TT-TCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATG
* * *
36736 GTTCCCAATCTTGAAAAGAATGGGGACTT-TTACT-
124 GTGCCTAATCCTGAAAAGAATGGGGA-TTATTA-TG
** * * * * * * * * **
36770 AGAA-TCAATGCATGACTAATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* ** * * * * * * **
36833 AGATTTCAATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATATTG
63 AGGTTTC-ATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
* * * ** **
36898 CCTAATCATTAAATGAATGAAGATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** * * * * * *
36929 AGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAAAAAAC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGG-AAGAAAG
* * * * * * * **
36994 GTATCTTACGAAACCAAAGCTTCAATATCATGTATCCTTGTGAGAA-AACTATGTGCATGGTGCC
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGCC
* *
37058 TAATCCTGAAAAGAAAGGGGATTAGTATG
129 TAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * *
37087 AGTATTC-TCGTTTGTCTTATTTTAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGA
1 AGAATTCAT-GTTTGTCTCATTTGAG-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-
* * ** ** * * * * *
37148 AAAGCTTCTCTTGTGACCCCAAAACAGT-AATGTC-TTCTATCCTAATGA-AAGGAATGTGTTTT
61 AAAGGTT-TCATGCAAAACCAAAGCA-TCAATATCATT-TATCCTTATGAGAA-GAATATGTTTA
* * * *** * *
37210 TGGTTCCCAATCTTTTCAAGATTAGGGACTT-TTATG
122 TGGTGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
37246 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * *
37309 AGATTTCCATACAAAAGAAAATCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * * ** **
37374 CCTAATTATGAAATGATTGAAGATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* ** * *
37405 AGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATATAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * *
37470 GTTTCTTGCCAAACCAAAGCGTCATTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* *
37535 AATCCTGAAAAGAATAGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * * *
37563 AGTATTCTTGTTTGCCTTATCT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGT-GGAAAAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** ** * * * * * *
37624 AGGCTTCTCTTGTGACCCCAAAGCATTAATGTC-TTTATCATAATGA-AAGGAATGTGTTTTTGG
63 AGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGG
* * * *
37687 TTCCCATTCTTGAAAAGAATGGGGACTT-TTACT-
125 TGCCTAATCCTGAAAAGAATGGGGA-TTATTA-TG
** * * * * * * **
37720 AG-ATTCAATGCATGACTCATTTAAAGTACAAACTTCA-ATTTTAAGGAAAATAAG-GCAAAGAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTT-AGAATTT-AGAAAAATAGGTGGGAAG-A
* ** * * * * * **
37782 AAGATTTCAATGCAAAAGAAAACCATCAATATC-TTGTATCATGATGAGGAGAATGTGTTTATAT
62 AAGGTTTC-ATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAAGAATATGTTTATGG
* * ** **
37846 TGCCTAATCATGAAATGAATGAAGATCCTTACT-
125 TGCCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** *** * *
37879 AGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATTCTTTACAAAAATTGGTGGGAAGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* ** * * * * **
37944 GTATC-TTAAGAAACCAAAGCTTCAATATCATATATCCTTGTGA-AAAAACTATGTGCATGGTGC
65 GTTTCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGC
* *
38007 CTAATCCTGAAAAGAAAGGGGATTAGTATG
128 CTAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
38037 AGTATTCTTATTTGTCTTATTTTAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAA
1 AGAATTCATGTTTGTCTCATTTGAG-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-A
* * ** ** * * * * * * *
38099 AAGCTTCTCTTGTGACCCCAAAACATTAATGTC-TTCTATCCTAAAGA-AAGGAATGTGTTTTTG
62 AAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTATG
* * *** * *
38162 GT-TCTCAATCTTTTCAAGATTAGGGACTT-TTATG
124 GTGCCT-AATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * *
38196 AGAA-TCAATGCATGTCTCA-TTGAAAGTACAAACTTTGATTTTA-ATGAAAATA--AGGCAATG
1 AGAATTC-ATGTTTGTCTCATTTG-AGGTACAAACTTAGAATTTAGA--AAAATAGGTGGGAA-G
* * * ** * * * * *
38256 AAAAGATTTCCATGTACAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTTG
61 -AAAGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATG
** * ** **
38321 GTGCCTAATCAAGAAATGAATGAAGATCCTTACT-
124 GTGCCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * * * * * * *
38355 AGGATCCATGTTTGTCTCATTTAAGGCACGAACTTAGAATTTACAAAAATTGGTGGTAAGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * *
38420 GTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTACGTTTATGGTGCC
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGCC
*
38484 TAATCCTGAAAAGAAAT-GGGATTAGTATG
129 TAATCCTGAAAAG-AATGGGGATTATTATG
* * * * * * * *
38513 AGTATTCTTGTTTGTCTTATTTTAGAGG--CAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGA
1 AGAATTCATGTTTGTCTCA-TTT-GAGGTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGA
** * * ** * * * * *
38574 AAACTTCTCTTGCGACCCCAAAGCATTAATGTC-TTGTATCCTAATGA-AAGGAATGTGTTTTTG
62 AAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTATG
* * * *** * *
38637 GTTCCCAATCTTTTCAAGATTAGGGACTT-TTATG
124 GTGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
38671 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * * * * * * * *
38734 AGATTTCCATAC-AAACGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGT
63 AGGTTT-CATGCAAAAC-CAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGT
** * ** **
38798 GCCTAATTATGAAATGAATGAAGATCCTTACT-
126 GCCTAATCCTGAAAAGAATGGGGATTATTA-TG
* ** *
38830 AGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * *
38895 GTTTCTTGCAAAACCAAAGCGTCACTATCATGTT-TCCTTATGAGAAGACTATGTTTATGCTGCC
65 GTTTCATGCAAAACCAAAGCATCAATATCAT-TTATCCTTATGAGAAGAATATGTTTATGGTGCC
* * *
38959 TAATCCT-AAAATGATTGGGGATCAGTATG
129 TAATCCTGAAAA-GAATGGGGATTATTATG
* * * * ** * * * * * *
38988 AGTATTCATGTTTGCCTTATTT-AAGTGACAAACTT-TCATTCTATCAATAA-CGGTAGAAAGGA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** ** * * * * * * *
39050 AGGCTTCTCTTGTGACCCCAAGGCATTAATGTC-TTTATCCTAATGA-AAGGAATGTGTTTTTAG
63 AGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGG
* * * *
39113 TTCCCATTCTTGAAAAGAATGGGGACTT-TTATG
125 TGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
39146 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATA--AGCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* ** * * * * * **
39208 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATATGTTTATACTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
* ** **
39273 CCTAATCAC-GAAATGAATGAAGATCCTTACT-
127 CCTAATC-CTGAAAAGAATGGGGATTATTA-TG
* * * ** * * * *
39304 AGAATCCAAGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* ** * * * * **
39369 GTATC-TTAAGAAACCAAAGCTTCAATATCATATATCCTTGTGA-AAAAACTATGTGCATGGTGC
65 GTTTCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGC
* *
39432 CTAATCCTGAAAAGAAAGGGGATTAGTATG
128 CTAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
39462 AGTATTCTTATTTGTCTTATTTTAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAA
1 AGAATTCATGTTTGTCTCATTTGAG-GTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-A
* * ** ** * * * * * * *
39524 AAGCTTCTCTTGTGACCCCAAAACATTAATGTC-TTCTATCCTAAAGA-AAGGAATGTGTTTTTG
62 AAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTATG
* * *** * *
39587 GT-TCTCAATCTTCTCAAGATTAGGGACTT-TTATG
124 GTGCCT-AATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * * **
39621 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * *
39684 AGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * * ** ** *
39749 CCTAATTATGAAATGATTGAAGATCCTAACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** * *
39780 AGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * *
39845 GTTTCTTGCCAAACCAAAGCGTCATTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
*
39910 AATCCTGAAAAGAATGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * * *
39938 AGTATTCTTGTTTGCCTTATCT-AAGTGACAAACTTTG-ATTCTATCAATAAT-GGTAGAAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** ** * * * * * *
40000 AGGCTTCTCTTGTGACCCCAAAGCATTAATGTC-TTTATCATAATGA-AAGGAATGTGTTTTTGG
63 AGG-TT-TCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGG
* * * *
40063 TTTCC-ATTCTTAAAAAGAATGGGGACTT-TTACT-
125 -TGCCTAATCCTGAAAAGAATGGGGA-TTATTA-TG
** * * * * * * * **
40096 AGAA-TCAATGCATGACTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* ** * * * * * * **
40159 AGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
* * *** **
40224 CCTAATCCCGAAATGAATGAATATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * *** * * * *
40255 AGAATCCATGTTTGTCTCATTTGAGGAATGGACTTATACTTTACAAAAATAGGTGGGAGGAAAGC
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * ** * *
40320 GTATCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTACGTTTATGGTGCC
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAA-TATGTTTATGGTGCC
* *
40384 TAATCCTGAAAAGAAAGGGGATTAGTATG
129 TAATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * *
40413 AGTATTCTTGTTTGTCTTATTTTAGAGG--CAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGA
1 AGAATTCATGTTTGTCTCA-TTT-GAGGTACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-
* * ** ** * * * * * *
40474 AAAGCTTCTCTTGTGACCCCAAAACATTAATGTC-TTCTATCCTAATGA-AAGGAATGTGTTTTT
61 AAAGGTT-TCATGCAAAACCAAAGCATCAATATCATT-TATCCTTATGAGAA-GAATATGTTTAT
* * * *** * *
40537 GGTTCCCAATCTTTTCAAGATTAGGGACTT-TTATG
123 GGTGCCTAATCCTGAAAAGAATGGGGA-TTATTATG
** * * * * * **
40572 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACATT-GATTTTAAGGAAAATAAG-GCAAAGAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAAC-TTAGAATTT-AGAAAAATAGGTGGGAAG-A
* ** * * * * *
40634 AAGATTTCCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGT
62 AAGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGT
** * ** **
40699 GCCTAATTATGAAATGAATGAAGATCCTTACT-
126 GCCTAATCCTGAAAAGAATGGGGATTATTA-TG
* * ** *
40731 AGAATCCATGTTTGTCTCATTTGTGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* * * * * * *
40796 GTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* *
40861 AATCCTGAAAAGATTGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * *
40889 AGTATTCATGTTTGCCTTATTT-AAGTGAGAAACTTTG-ATTCTATCAATAA-CGGTGGAAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** * * * * * *
40951 AGGCTTCTCTTG-AGACCCCAAAGCATTAATGTC-TTTATCATAATGA-AAGGAATGTGTTTTTG
63 AGG-TT-TCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATG
* * * *
41013 GTTCCCATTCTTGAAAAGAATGGGGACTT-TTACT-
124 GTGCCTAATCCTGAAAAGAATGGGGA-TTATTA-TG
** * * * * * * **
41047 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* * ** * * * * * *
41110 AGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * ** **
41175 CCTAATTATGAAATGAATGAAGATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* ** * *
41206 AGAATCCATGTTTGTCTCATTTGAGGTAGGAACCTAGAATTTAGAAAAATTGGTGGGAAGAAAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* ** * * * * *
41271 GTTTCTTGCCTAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* *
41336 AATCCTGAAAAGATTGGGGATTAGTATG
130 AATCCTGAAAAGAATGGGGATTATTATG
* * * * * * * * * * *
41364 AGTATTCATGTTTGCCTTATTT-AAGTGACAAAGTTTG-ATTCTATCAATAA-CGGTAGAAAGAA
1 AGAATTCATGTTTGTCTCATTTGAGGT-ACAAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAA
* ** * * * * *
41426 AGGCTTCTCTTG-AGACCCCAAAGCATTAATATC-TTTATCATAATGA-AAGGAATGTGTTTTTG
63 AGG-TT-TCATGCA-AAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATG
* * * *
41488 GTTCCCATTCTTGAAAAGAATGGGGACTT-TTACT-
124 GTGCCTAATCCTGAAAAGAATGGGGA-TTATTA-TG
** * * * * * * **
41522 AGAA-TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAA
1 AGAATTC-ATGTTTGTCTCATTTGAGGTACAAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AA
* ** ** * * * * * *
41585 AGATTTCCATATAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTG
63 AGGTTT-CATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTG
** * ** **
41650 CCTAATTATGAAATGAATGAAGATCCTTACT-
127 CCTAATCCTGAAAAGAATGGGGATTATTA-TG
* ** * * *
41681 AGAATCCATGTTTGTCTCATTTGAGGTAGGAACCTAGAATTTAGAAAAATTGGTGGGAAGATAGT
1 AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAG-
* ** * * * * *
41746 GTTTCTTGCCTAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCT
65 GTTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
*
41811 AATCCTGAAAAGAAAT-GGGATTAGTATG
130 AATCCTGAAAAG-AATGGGGATTATTATG
* *
41839 AGTATTCTTGTTTGTC
1 AGAATTCATGTTTGTC
41855 ATATTTTAGA
Statistics
Matches: 7724, Mismatches: 2750, Indels: 1246
0.66 0.23 0.11
Matches are distributed among these distances:
156 65 0.01
157 814 0.11
158 3867 0.50
159 2803 0.36
160 172 0.02
161 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (157 bp):
AGAATTCATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAGG
TTTCATGCAAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
ATCCTGAAAAGAATGGGGATTATTATG
Found at i:32779 original size:315 final size:316
Alignment explanation
Indices: 32360--33012 Score: 898
Period size: 315 Copynumber: 2.1 Consensus size: 316
32350 TGCATGTCTC
32360 ATTTAAAGT-ACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
1 ATTT-AAGTGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAA
* ** * * * *
32424 AACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATTG
65 AACCATAAATATCATGTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACGAAATGAATG
* * * *
32489 AAGATCCTTACTGGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGG
130 AAGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGAAGGAACTTAGAATATACAAAAATAGG
* * * * *
32554 TGGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTAT-AGAAGACTATG
195 TGGGAAGAAAGCGTATCTTGCCAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATG
* *
32618 TTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTT
260 TTTATGCTGCCTAATCCTGAAAAAAAT-GGGATTAGTATGAGTATTCATGTTTGCCTT
* * * *
32676 ATTTAAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAG-AAAGATTTCCATGCAAAAGAAA
1 ATTTAAGTGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
* * * * *
32740 ACCATCAATATCATGTATCTTGATGAGGGGAATGTGTTTATACTACCTAATCCCGAAATGAATGA
66 ACCATAAATATCATGTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACGAAATGAATGA
* * * * * * *
32805 ATATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGAAGGAACTTAGAATATACAAAAATAGGT
* *
32870 GGGAGGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGT
196 GGGAAGAAAGCGTATCTTGCCAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGT
* * *
32935 TTATGGTGCCTAATCCTGAAAAAAATGGGATTAGTATGAGTATTCTTGTTTGTCTT
261 TTATGCTGCCTAATCCTGAAAAAAATGGGATTAGTATGAGTATTCATGTTTGCCTT
* *
32991 ATTTTAGAGACAAACTTTGATT
1 ATTTAAGTGACAAACTTTGATT
33013 CTATCAATAA
Statistics
Matches: 294, Mismatches: 41, Indels: 5
0.86 0.12 0.01
Matches are distributed among these distances:
315 226 0.77
316 68 0.23
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (316 bp):
ATTTAAGTGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
ACCATAAATATCATGTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACGAAATGAATGA
AGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGAAGGAACTTAGAATATACAAAAATAGGT
GGGAAGAAAGCGTATCTTGCCAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGT
TTATGCTGCCTAATCCTGAAAAAAATGGGATTAGTATGAGTATTCATGTTTGCCTT
Found at i:33449 original size:790 final size:790
Alignment explanation
Indices: 31884--34277 Score: 3821
Period size: 790 Copynumber: 3.0 Consensus size: 790
31874 TGCATGACTC
* * * *
31884 ATTTAAAGT-ACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
1 ATTT-AAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAG-AAAGATTTCCATGCAAAAGAA
* *
31948 AACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCCTAATCACGAAATGAATG
64 AACCATCAATATCATGTATCTTGATGAGGGGAATGTGTTTATACTGCCTAATCACGAAATGAATG
32013 AAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGG
129 AAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGG
** * * * *
32078 TGGGAAGAAAGCGTATCTTAAGAAACCAAAGCTTCAATATCATATATCCTTGTCAAAAAACTATG
194 TGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATATATCCTTATGAGAAAACTATG
*
32143 TTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAG
259 TTTATGGTGCCTAATCCTGAAAA-AAATGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAG
*
32208 AGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTCACCCCAAAACATTA
323 AGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTA
*
32273 ATGTCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTTTCAAGATTAGGGACTTT
388 ATGTCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTCTCAAGATTAGGGACTTT
32338 TATGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGA
453 TATGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGA
32403 AAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGG
518 AAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGG
*
32468 TGCCTAATTATGAAATGATTGAAGATCCTTACTGGAATCCATGTTTGTCTCAATTGAGGTAGGAA
583 TGCCTAATTATGAAATGATTGAAGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAA
32533 CTTAGAATATAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATG
648 CTTAGAATATAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATG
32598 TATCCTTATAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTAT
713 TATCCTTATAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTAT
32663 TCATGTTTGCCTT
778 TCATGTTTGCCTT
32676 ATTTAAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAGAAAGATTTCCATGCAAAAGAAAA
1 ATTTAAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAGAAAGATTTCCATGCAAAAGAAAA
* *
32741 CCATCAATATCATGTATCTTGATGAGGGGAATGTGTTTATACTACCTAATCCCGAAATGAATGAA
66 CCATCAATATCATGTATCTTGATGAGGGGAATGTGTTTATACTGCCTAATCACGAAATGAATGAA
* * *
32806 TATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTG
131 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTG
* *
32871 GGAGGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGTT
196 GGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATATATCCTTATGAGAAAACTATGTT
32936 TATGGTGCCTAATCCTGAAAAAAATGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGA
261 TATGGTGCCTAATCCTGAAAAAAATGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGA
33001 CAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTAATG
326 CAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTAATG
33066 TCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTCTCAAGATTAGGGACTTTTAT
391 TCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTCTCAAGATTAGGGACTTTTAT
33131 GAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
456 GAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
33196 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGC
521 GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGC
33261 CTAATTATGAAATGATTGAAGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAACTT
586 CTAATTATGAAATGATTGAAGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAACTT
*
33326 AGAATATAGAAAAATTGGTCGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTAT
651 AGAATATAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTAT
33391 CCTTATAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCA
716 CCTTATAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCA
33456 TGTTTGCCTT
781 TGTTTGCCTT
33466 ATTTAAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAGAAAGATTTCCATGCAAAAGAAAA
1 ATTTAAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAGAAAGATTTCCATGCAAAAGAAAA
* * *
33531 CCATCAATATCATGTATCTTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAATGAA
66 CCATCAATATCATGTATCTTGATGAGGGGAATGTGTTTATACTGCCTAATCACGAAATGAATGAA
* * * * * *
33596 GATCCTTTCTAGAATCCATGTTTGTCTTATTTAAGGTAA-GAACTTAAAATTTAGAAAAATTGGT
131 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG-AATGAACTTATACTTTACAAAAATTGGT
* * * * * *
33660 GGGAAGAAAGCGTTTCATGCTAAACCAAAGCATCACTATCATTTATCCTTATGAGAAGACTATGT
195 GGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATATATCCTTATGAGAAAACTATGT
* * * * *
33725 TTATGCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGCATTCTTGTTT-TCCTTATCTAAG
260 TTATGGTGCCTAATCCTGAAAAAAAT-GGGATTAGTATGAGTATTCTTGTTTGT-CTTATTTTAG
* * *
33789 TGACAAACTTTGATTCTATCAATAACGGT-GGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATT
323 AGACAAACTTTGATTCTATCAATAACGGTAGG-AAGAAAAGCTTCTCTTGTGACCCCAAAACATT
* * * * *** * *
33853 AATGTCTT-TATCATAATGAAAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTT
387 AATGTCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTCTCAAGATTAGGGACTT
*
33917 TTACT-AGAATCAATGCATGTCTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAA
452 TTA-TGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
* * * * *
33981 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTAT
516 GAAAAGATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
** * *** * * * * *
34046 ACTACCTAATCCCGAAATGAATGAATATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATG
581 GGTGCCTAATTATGAAATGATTGAAGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGTAGG
* * * * * * * * * * *
34111 AACTTATACTTTACAAAAATAGGTGGGAGGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCA
646 AACTTAGAATATAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCA
* * * *
34176 TGTATCCTTATGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAAAAT-GGGATTAGTATGAG
711 TGTATCCTTAT-AGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAG
* *
34240 TATTCTTGTTTGTCTT
775 TATTCATGTTTGCCTT
* * *
34256 ATTTTAGAGGCAAACTTTGATT
1 ATTTAAGTGACAAACTTTGATT
34278 CTATCAATAA
Statistics
Matches: 1495, Mismatches: 100, Indels: 16
0.93 0.06 0.01
Matches are distributed among these distances:
790 1099 0.74
791 363 0.24
792 33 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (790 bp):
ATTTAAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAGAAAGATTTCCATGCAAAAGAAAA
CCATCAATATCATGTATCTTGATGAGGGGAATGTGTTTATACTGCCTAATCACGAAATGAATGAA
GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTG
GGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATATATCCTTATGAGAAAACTATGTT
TATGGTGCCTAATCCTGAAAAAAATGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGA
CAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTAATG
TCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTCTCAAGATTAGGGACTTTTAT
GAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
GATTTCCATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGC
CTAATTATGAAATGATTGAAGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAACTT
AGAATATAGAAAAATTGGTGGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTAT
CCTTATAGAAGACTATGTTTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCA
TGTTTGCCTT
Found at i:33927 original size:316 final size:315
Alignment explanation
Indices: 33155--33807 Score: 828
Period size: 315 Copynumber: 2.1 Consensus size: 315
33145 GTCTCATTTA
* * * * * * *
33155 AAGT-ACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCA
1 AAGTGACAAACTTTGATTCT-ATGAAAGTAAGGTAAAG-AAAGACTTCCATGCAAAACAAAACCA
* * * * * ** * * * * *
33219 TAAATATCATTTATCCTAATG-AGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATTGAAGA
64 TCAATATCATGTATCATAATGAAAG-GAATATGTTTACAGTGCCCAATCACGAAAAGAATGAAGA
* * * *
33283 TCC-TTACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGTCG
128 TCCTTTACTAGAATCCATGTTTGTCTCATTTAAGGTAAGAACTTAAAATATAGAAAAATTGGTCG
* * *
33347 GAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTATAGAAGACTATGTTTA
193 GAAGAAAGCGTTTCATGCCAAACCAAAGCATCACTATCATGTATCCTTATAGAAGACTATGTTTA
* * *
33412 TGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTT
258 TGCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGCATTCATGTTTGCCTTATCT
* * *
33470 AAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAGAAAGATTTCCATGCAAAAGAAAACCAT
1 AAGTGACAAACTTTGATTCTAT-GAAAGTAAGGTAAAGAAAGACTTCCATGCAAAACAAAACCAT
* * ** * *
33535 CAATATCATGTATCTTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAATGAAGATC
65 CAATATCATGTATCATAATGAAAGGAATATGTTTACAGTGCCCAATCACGAAAAGAATGAAGATC
* * *
33600 CTTT-CTAGAATCCATGTTTGTCTTATTTAAGGTAAGAACTTAAAATTTAGAAAAATTGGTGGGA
130 CTTTACTAGAATCCATGTTTGTCTCATTTAAGGTAAGAACTTAAAATATAGAAAAATTGGTCGGA
* *
33664 AGAAAGCGTTTCATGCTAAACCAAAGCATCACTATCATTTATCCTTATGAGAAGACTATGTTTAT
195 AGAAAGCGTTTCATGCCAAACCAAAGCATCACTATCATGTATCCTTAT-AGAAGACTATGTTTAT
* *
33729 GCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGCATTCTTGTTTTCCTTATCT
259 GCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGCATTCATGTTTGCCTTATCT
33786 AAGTGACAAACTTTGATTCTAT
1 AAGTGACAAACTTTGATTCTAT
33808 CAATAACGGT
Statistics
Matches: 300, Mismatches: 33, Indels: 9
0.88 0.10 0.03
Matches are distributed among these distances:
315 179 0.60
316 121 0.40
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (315 bp):
AAGTGACAAACTTTGATTCTATGAAAGTAAGGTAAAGAAAGACTTCCATGCAAAACAAAACCATC
AATATCATGTATCATAATGAAAGGAATATGTTTACAGTGCCCAATCACGAAAAGAATGAAGATCC
TTTACTAGAATCCATGTTTGTCTCATTTAAGGTAAGAACTTAAAATATAGAAAAATTGGTCGGAA
GAAAGCGTTTCATGCCAAACCAAAGCATCACTATCATGTATCCTTATAGAAGACTATGTTTATGC
TGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGCATTCATGTTTGCCTTATCT
Found at i:35566 original size:476 final size:475
Alignment explanation
Indices: 33466--42078 Score: 12596
Period size: 475 Copynumber: 18.1 Consensus size: 475
33456 TGTTTGCCTT
* * *
33466 ATTT-AAGTGACAAACTTTGATTTTATGGAAAGTAAGGTAAAG-AAAGATTTCCATGCAAAAGAA
1 ATTTAAAGT-ACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * * * * * ** *
33529 AACCATCAATATCATGTATCTTGATGAGGGGAATATGTTTACAGTGCCTAATCACGAAATGAATG
65 AACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATG
* * * * *
33594 AAGATCCTTTCTAGAATCCATGTTTGTCTTATTTAAGGTAAGAACTTAAAATTTAGAAAAATTGG
130 AAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGG
* * * *
33659 TGGGAAGAAAGCGTTTCATGCTAAACCAAAGCATCACTATCATTTATCCTTATGAGAAGACTATG
195 TGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATG
* * *
33724 TTTATGCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGCATTCTTGTTT-TCCTTATCTAA
260 TTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGT-CTTATTTAA
* *
33788 GTGACAAACTTTGATTCTATCAATAACGGT-GGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCAT
324 GAGACAAACTTTGATTCTATCAATAACGGTAGG-AAGAAAAGCTTCTCTTGTGACCCCAAAGCAT
* * *
33852 TAATGTCTTTATCATAATGAAAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTT
388 TAATGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTT
33917 TTACT-AGAATCAATGCATGTCTC
453 TTA-TGAGAATCAATGCATGTCTC
*
33940 ATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * ** * **
34005 ACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTACCTAATCCCGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * * * * * *
34070 ATATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * * * *
34135 GGGAGGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
* * *
34200 TTATGGTGCCTAATCCTGAAAA-AAATGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGA
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* *
34264 GGCAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAG-TTCTCTTGCGACCCCAAAGCATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
*** *
34328 TGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTT
391 TGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
34393 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
*
34414 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
34479 ACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATTATGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
*
34544 AGATTCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * *
34609 GGGAAGAAAGTGTTTCTTGCAAAACCAAAGCGTCACTATCATGTTTCCTTATGAGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * *
34674 TTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGT
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* * * * *
34739 GACAAACTTTGATTCTATCAATAACGGTAGAAAGGAAGGCTTCTCTTGTGACCCCAAGGCATTAC
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
* * *
34804 TGTCTTTATCCTAATGAAAGGAATGTGTTTTTAGTTCCCATTCTTGAAAAGAATGGGGACTTTTA
391 TGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTTA
34869 TGAGAATCAATGCATGTCTC
456 TGAGAATCAATGCATGTCTC
*
34889 ATTTAAAGTACAAACTTCGATTTTAAGGAAAATAA-GCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * ** *
34953 ACCATCAATATCATGTATCATGATGAGGAGAATATGTTTATACTGCCTAATCACGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * * * * *
35018 AGATCCTTACTAGAATCCATGTTTATCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* ** * * * * * *
35083 GGGAAGAAAGCGTATCTTAAGAAACCAAAGCTTCATTATCATATATCCTTGTGAAAAAACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * * *
35148 GCATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATTAGTATTCTTATTTGTCTTATTTTAGA
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
*
35213 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
* * *** *
35278 TGTCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTTTCAAGATTAGGGACTTTT
391 TGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
35343 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
*
35364 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
35429 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATTGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* *
35494 AGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * * *
35559 GGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCATTATCATGTATCCTTATGAGAAGACTCTGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
* * * *
35624 TTATGCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCTTGTTTGCCTTATCTAAGT
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* * *
35689 GACAAACTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAGGCATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
* * *
35754 TGTCTTTATCCTAATGAAAGGAATGTGTTTTTAGTTCCCATTCTTGAAAAGAATGGGGACTTTTA
391 TGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTTA
35819 TGAGAATCAATGCATGTCTC
456 TGAGAATCAATGCATGTCTC
*
35839 ATTTAAAGTACAAACTTCGATTTTAAGGAAAATAA-GCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * ** *
35903 ACCATCAATATCATGTATCATGATGAGGAGAATATGTTTATACTGCCTAATCACGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * * * *
35968 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* ** * * * * * *
36033 GGGAAGAAAGCGTATCTTAAGAAACCAAAGCTTCATTATCATATATCCTTGTGAAAAAACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * * *
36098 GCATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATTAGTATTCTTATTTGTCTTATTTTAGA
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
*
36163 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
* * *** *
36228 TGTCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTTTCAAGATTAGGGACTTTT
391 TGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
36293 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
*
36314 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
36379 ATCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATTGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* *
36444 AGATCCTTACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* *
36509 GGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTAT-AGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * *
36573 TTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGT
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* * *
36638 GACAAACTTTGATTCTATCAATAACGGT-GGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTG
326 GACAAACTTTGATTCTATCAATAACGGTAGG-AAGAAAAGCTTCTCTTGTGACCCCAAAGCATTA
* *
36702 ATGTCTTTATCATAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTTTT
390 ATGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
* *
36767 ACT-AGAATCAATGCATGACTA
455 A-TGAGAATCAATGCATGTCTC
* *
36788 ATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * ** *
36853 ACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATATTGCCTAATCATTAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * * * *
36918 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * * * * * * *
36983 GGGAAAAAAACGTATCTTACGAAACCAAAGCTTCAATATCATGTATCCTTGTGAGAAAACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * *
37048 GCATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTCGTTTGTCTTATTTTAGA
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* *
37113 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACAGTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
*** *
37178 TGTCTTCTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTT
391 TGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
37243 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
*
37264 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
37329 ATCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATTGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
*
37394 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATATAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * *
37459 GGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCATTATCATGTATCCTTATGAGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
* *
37524 TTATGCTGCCTAATCCTGAAAAGAATA-GGGATTAGTATGAGTATTCTTGTTTGCCTTATCTAAG
261 TTATGCTGCCTAATCCTGAAAAGAA-AGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAG
*
37588 TGACAAACTTTGATTCTATCAATAACGGT-GGAA-AAAAGGCTTCTCTTGTGACCCCAAAGCATT
325 AGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAA-GCTTCTCTTGTGACCCCAAAGCATT
* * *
37651 AATGTCTTTATCATAATGAAAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTT
389 AATGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTT
* *
37716 TACT-AGATTCAATGCATGACTC
454 TA-TGAGAATCAATGCATGTCTC
** *
37738 ATTTAAAGTACAAACTTCAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * **
37803 ACCATCAATATC-TTGTATCATGATGAGGAGAATGTGTTTATATTGCCTAATCATGAAATGAATG
66 ACCATAAATATCATT-TATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATG
* * *** *
37867 AAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATTCTTTACAAAAATTGG
130 AAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGG
* ** * * * * * *
37932 TGGGAAGAAAGCGTATCTTAAGAAACCAAAGCTTCAATATCATATATCCTTGTGAAAAAACTATG
195 TGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATG
** * * *
37997 TGCATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTATTTGTCTTATTTTAG
260 TTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAG
*
38062 AGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTA
325 AGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTA
* * *** *
38127 ATGTCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTTTCAAGATTAGGGACTTT
390 ATGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTT
38192 TATGAGAATCAATGCATGTCTC
454 TATGAGAATCAATGCATGTCTC
* * * * *
38214 ATTGAAAGTACAAACTTTGATTTTAATGAAAATAAGGCAATGAAAAGATTTCCATGTACAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * *
38279 ACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTTGGTGCCTAATCAAGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * * * *
38344 AGATCCTTACTAGGATCCATGTTTGTCTCATTTAAGGCACGAACTTAGAATTTACAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * * * * *
38409 GGTAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
* * *
38474 TTATGGTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGA
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* *
38539 GGCAAACTTTGATTCTATCAATAACGGTAGGAAGAAAA-CTTCTCTTGCGACCCCAAAGCATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
*** *
38603 TGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTT
391 TGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
38668 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
* *
38689 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAACGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
38754 ACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATTATGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
38819 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * *
38884 GGGAAGAAAGTGTTTCTTGCAAAACCAAAGCGTCACTATCATGTTTCCTTATGAGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * *
38949 TTATGCTGCCTAATCCT-AAAATGATTGGGGATCAGTATGAGTATTCATGTTTGCCTTATTTAAG
261 TTATGCTGCCTAATCCTGAAAA-GAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAG
* * * * * *
39013 TGACAAACTTTCATTCTATCAATAACGGTAGAAAGGAAGGCTTCTCTTGTGACCCCAAGGCATTA
325 AGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTA
* * *
39078 ATGTCTTTATCCTAATGAAAGGAATGTGTTTTTAGTTCCCATTCTTGAAAAGAATGGGGACTTTT
390 ATGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
39143 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
*
39164 ATTTAAAGTACAAACTTCGATTTTAAGGAAAATAA-GCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * * ** *
39228 ACCATCAATATCATGTATCATGATGAGGAGAATATGTTTATACTGCCTAATCACGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * * * * *
39293 AGATCCTTACTAGAATCCAAGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* ** * * * * * *
39358 GGGAAGAAAGCGTATCTTAAGAAACCAAAGCTTCAATATCATATATCCTTGTGAAAAAACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * *
39423 GCATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTATTTGTCTTATTTTAGA
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
*
39488 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
* * *** *
39553 TGTCTTCTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTCTCAAGATTAGGGACTTTT
391 TGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
39618 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
*
39639 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
39704 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGATTGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * *
39769 AGATCCTAACTAGAATCCATGTTTGTCTCAATTGAGGTAGGAACTTAGAATATAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * *
39834 GGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCATTATCATGTATCCTTATGAGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
* * * *
39899 TTATGCTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCTTGTTTGCCTTATCTAAGT
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* * *
39964 GACAAACTTTGATTCTATCAATAATGGTAGAAAGAAAGGCTTCTCTTGTGACCCCAAAGCATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
* * * * *
40029 TGTCTTTATCATAATGAAAGGAATGTGTTTTTGGTTTCCATTCTTAAAAAGAATGGGGACTTTTA
391 TGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTTA
*
40094 CT-AGAATCAATGCATGACTC
456 -TGAGAATCAATGCATGTCTC
*
40114 ATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* * * * ** **
40179 ACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCCTAATCCCGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
* * * * * *
40244 ATATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGG-ACTTATACTTTACAAAAATAGG
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTA-GGAACTTAGAATTTAGAAAAATTGG
* * * * * * *
40308 TGGGAGGAAAGCGTATCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACG
195 TGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATG
* *
40373 TTTATGGTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAG
260 TTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAG
* *
40438 AGGCAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAACATTA
325 AGACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTA
*** *
40503 ATGTCTTCTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTT
390 ATGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTT
40568 TATGAGAATCAATGCATGTCTC
454 TATGAGAATCAATGCATGTCTC
*
40590 ATTTAAAGTACAAACATTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
*
40655 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATTATGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
*
40720 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGTGGTAGGAACTTAGAATTTAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* *
40785 GGGAAGAAAGTGTTTCTTGCCAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * *
40850 TTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGT
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* * *
40915 GAGAAACTTTGATTCTATCAATAACGGT-GGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTA
326 GACAAACTTTGATTCTATCAATAACGGTAGG-AAGAAAAGCTTCTCTTGTGACCCCAAAGCATTA
* * *
40979 ATGTCTTTATCATAATGAAAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTT
390 ATGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
41044 ACT-AGAATCAATGCATGTCTC
455 A-TGAGAATCAATGCATGTCTC
*
41065 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
41130 ACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATTATGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
*
41195 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACCTAGAATTTAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* **
41260 GGGAAGAAAGTGTTTCTTGCCTAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
** * * *
41325 TTATGCTGCCTAATCCTGAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGT
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* * * *
41390 GACAAAGTTTGATTCTATCAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
* * * *
41455 TATCTTTATCATAATGAAAGGAATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTA
391 TGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTTA
41520 CT-AGAATCAATGCATGTCTC
456 -TGAGAATCAATGCATGTCTC
**
41540 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATATAAAAGAAA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* *
41605 ACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATTATGAAATGAATGA
66 ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
*
41670 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACCTAGAATTTAGAAAAATTGGT
131 AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
* * **
41735 GGGAAGATAGTGTTTCTTGCCTAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
196 GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
* * *
41800 TTATGCTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGTATTCTTGTTTGTCATATTTTAGA
261 TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
* * *
41865 GGCAAACTATGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGCATTAA
326 GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
*** * *
41930 TGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGAACTTTT
391 TGTCTT-TATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTT
41995 ATGAGAATCAATGCATGTCTC
455 ATGAGAATCAATGCATGTCTC
*
42016 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGA
1 ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
42079 GGGCTAAATC
Statistics
Matches: 7296, Mismatches: 800, Indels: 84
0.89 0.10 0.01
Matches are distributed among these distances:
473 34 0.00
474 2034 0.28
475 3016 0.41
476 2209 0.30
477 3 0.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
ATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAA
ACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATGA
AGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGT
GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGT
TTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGA
GACAAACTTTGATTCTATCAATAACGGTAGGAAGAAAAGCTTCTCTTGTGACCCCAAAGCATTAA
TGTCTTTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGGGACTTTTA
TGAGAATCAATGCATGTCTC
Found at i:44670 original size:475 final size:476
Alignment explanation
Indices: 43728--44685 Score: 1425
Period size: 476 Copynumber: 2.0 Consensus size: 476
43718 GTTGTCATCA
* * * *
43728 ATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAGGAAAGCGTATCTT
1 ATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTACAAAAATAGGTGGGAAGAAAGCGTATCTT
* *
43793 GCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACGTTTATGGTGCCTAATCCTG
66 GCCAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACGTTTATGCTGCCTAATCCTG
** * * *
43858 AAAAGAAAGGGGATTAGTATGAGTATTTTTGTTTGTCTTATTTTAGAGGCAAACTTTGATTCTAT
131 AAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
43923 CAATAACGGTAGGAAGAAAAGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGA
196 CAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCATAATGA
*** * *
43988 AAGGAATGTCTTTTTGGTTCCCAATCTTTTCAAGATTAGGAACTTTTATGAGAATCAATGCATGT
261 AAGGAATGTCTTTTTGGTTCCCAATCTTGAAAAGAATAGGAACTTTTATGAGAATCAATGCATGA
*
44053 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
326 CTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
* * * * ** * *
44118 AAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATTATGAAATGAA
391 AAAACCATAAATATCATGTATCATAATGAGGAGAATATGTTTATACTGCCTAATCACGAAATGAA
44183 TGAAGATCCTTACTAGAATCC
456 TGAAGATCCTTACTAGAATCC
* * * * *
44204 ATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTT
1 ATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTACAAAAATAGGTGGGAAGAAAGCGTATCTT
* * * *
44269 GCCAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTG
66 GCCAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACGTTTATGCTGCCTAATCCTG
** * *
44334 AAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAAGTTTGATTCTAT
131 AAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTAT
*
44399 CAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGTCTT-TATCATAATGA
196 CAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCATAATGA
* * * * *
44463 AAGGAATGTGTTTTTGGTTCCGATTCTTGAAAAGAATGGGGACTTTTACT-AGAATCAATGCATG
261 AAGGAATGTCTTTTTGGTTCCCAATCTTGAAAAGAATAGGAACTTTTA-TGAGAATCAATGCATG
*
44527 ACTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
325 ACTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
* * *
44592 GAAAACCATCAATATCATGTATCATGATGAGGAGAATATGTTTATACTGCCTAATCCCGAAATGA
390 GAAAACCATAAATATCATGTATCATAATGAGGAGAATATGTTTATACTGCCTAATCACGAAATGA
*
44657 ATGAATATCCTTACTAGAATCC
455 ATGAAGATCCTTACTAGAATCC
44679 ATGTTTG
1 ATGTTTG
44686 ATGAAAACCA
Statistics
Matches: 429, Mismatches: 52, Indels: 3
0.89 0.11 0.01
Matches are distributed among these distances:
475 207 0.48
476 222 0.52
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (476 bp):
ATGTTTGTCTCATTTGAGGAAGGAACTTAGAATTTACAAAAATAGGTGGGAAGAAAGCGTATCTT
GCCAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACGTTTATGCTGCCTAATCCTG
AAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGACAAACTTTGATTCTAT
CAATAACGGTAGAAAGAAAAGCTTCTCTTGAGACCCCAAAGCATTAATGTCTTGTATCATAATGA
AAGGAATGTCTTTTTGGTTCCCAATCTTGAAAAGAATAGGAACTTTTATGAGAATCAATGCATGA
CTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
AAAACCATAAATATCATGTATCATAATGAGGAGAATATGTTTATACTGCCTAATCACGAAATGAA
TGAAGATCCTTACTAGAATCC
Found at i:46332 original size:12 final size:11
Alignment explanation
Indices: 46310--46385 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
46300 AGAGAAAGAA
*
46310 GAGAGAGGAGG
1 GAGATAGGAGG
46321 GATGATAGGAGG
1 GA-GATAGGAGG
*
46333 AGAGACAGGA--
1 -GAGATAGGAGG
*
46343 GAGATAGTA--
1 GAGATAGGAGG
46352 GAGATAGGAGG
1 GAGATAGGAGG
46363 GATGATAGGAGG
1 GA-GATAGGAGG
*
46375 AGAGACAGGAG
1 -GAGATAGGAG
46386 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:46342 original size:24 final size:24
Alignment explanation
Indices: 46309--46394 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
46299 AAGAGAAAGA
*
46309 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
46333 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
46351 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
46375 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
46395 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:46361 original size:42 final size:42
Alignment explanation
Indices: 46300--46418 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
46290 TAGCCCTCAA
* *
46300 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
46342 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
46384 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
46419 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:52002 original size:158 final size:158
Alignment explanation
Indices: 51394--53396 Score: 656
Period size: 159 Copynumber: 12.6 Consensus size: 158
51384 GTTGTCATCA
* * * * * * * * *
51394 ATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAGGAAAGCGTATCTT
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTT
* **
51459 GCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTACGTTTATGGTGCCTAATCCT
66 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCCT
* * * * * *
51523 GAAAAGAAAGGGGATTAGTA-TGAGTATTC
130 GAAAAGAATGAGGATCATTACT-AGAATCC
* * * * * * * * * *
51552 TTGTTTGTCTTATTTTAGAG-GCAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAAAAGCT-T
1 ATGTTTGTCTCATTTGA-AGTACGAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-AAAG-TGT
* ** * * * * * *
51613 CTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCA
61 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* *** * * * * *
51677 ATCTTTTCAAG-ATTAGGAACTTTTACGAGAATCA
125 ATCCTGAAAAGAATGAGGATC-ATTACTAGAATCC
** * * * * * * ** *
51711 ATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGAT-TTC
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AAAG-TGTTT
* * * ** * * * * * *
51774 CATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATT
63 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC
* * *
51839 ATGAAATGAATGAAGATCATTACTAGAATCC
128 CTGAAAAGAATGAGGATCATTACTAGAATCC
* * *
51870 ATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTT
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTT
* * * * * * * *
51935 GCCAAACCAAAGCGTCACTATCATGTATTCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTG
66 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTG
* * * * * *
52000 AAAAGATTGGGGATTAGTA-TGAGTATTC
131 AAAAGAATGAGGATCATTACT-AGAATCC
* * * * * * * * *
52028 ATGTTTGCCTTATTT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGGTAGAAAGAAAG-GCTT
1 ATGTTTGTCTCATTTGAAGT-ACGAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAAAGTG-TT
* ** * * * * * * *
52089 CTCTTGAGACCCCAAAGCATTAATGTC-TTTATCATAATGA-AAGGAATGTGTTTTTGGTTCCCA
62 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * * *
52152 TTCTTGAAAAGAATGGGGA-CTTTGACTAGAATCA
125 ATCCTGAAAAGAATGAGGATCATT-ACTAGAATCC
** * * * * * * * ** *
52186 ATGCATGACTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAG-GCAAAGAAAAGAT-TTC
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AAAG-TGTTT
* * ** * * * * **
52249 CATGCAAAAGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCCTAATC
63 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC
* * ** *
52314 CCGAAATGAATGAATATCCTTACTAGAATCC
128 CTGAAAAGAATGAGGATCATTACTAGAATCC
* * * * * * * * *
52345 ATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGACGAAAGCGTATCTT
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTT
* **
52410 GCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-AACTACGTTTATGGTGCCTAATCCT
66 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAATCCT
* * * * * *
52474 GAAAAGAAAGGGGATTAGTA-TGAGTATTC
130 GAAAAGAATGAGGATCATTACT-AGAATCC
* * * * * * * * * *
52503 TTGTTTGTCTTATTTTAGAG-GCAAACTTTG-ATTCTATCAATAA-CGGTAGGAAGAAAAGCT-T
1 ATGTTTGTCTCATTTGA-AGTACGAACTTAGAATT-TA-GAAAAATAGGTGGGAAG-AAAG-TGT
* ** * * * * * *
52564 CTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCA
61 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* *** * * *
52628 ATCTTTTCAAG-ATTAGGGA-CTTTTA-TGAGAATCA
125 ATCCTGAAAAGAATGA-GGATC-ATTACT-AGAATCC
** * * * * * * ** *
52662 ATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG-GCAAAGAAAAGAT-TTC
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AAAG-TGTTT
* * * ** * * * * * *
52725 CATACAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATT
63 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC
* * * *
52790 ATGAAATGAATGAAGATCCTTACTAGAATCC
128 CTGAAAAGAATGAGGATCATTACTAGAATCC
* * *
52821 ATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGTGTTTCTT
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTT
* * * * * * *
52886 GCCAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCTG
66 GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTG
* * * * * *
52951 AAAAGATTGGGGATTAGTA-TGAGTATTC
131 AAAAGAATGAGGATCATTACT-AGAATCC
* * * * * * * * * *
52979 ATGTTTGCCTTATTT-AAGTGACAAACTTTG-ATTCTATCAATAA-CGATAGAAAGAAAG-GCTT
1 ATGTTTGTCTCATTTGAAGT-ACGAACTTAGAATT-TA-GAAAAATAGGTGGGAAGAAAGTG-TT
** ** * * * * * *
53040 CTCTTAAGACCCCAAAGCATTAATGTC-TTTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCA
62 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * * *
53103 TTCTTGAAAAGAATGGGGA-CTTTTA-TGAGAATCA
125 ATCCTGAAAAGAATGAGGATC-ATTACT-AGAATCC
** * * * * * ** * *
53137 ATGCATGTCTCATTTAAAGTACAAACTTCGATTTTAAGAAAAATAAG-GCAAAGAAAAGAT-ATC
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTT-AGAAAAATAGGTGGGAAG-AAAG-TGTTT
* * ** * * * * * * *
53200 CATGCAAAAGAAAACCATCAATATCATGTAGCATGATGAGGAGAATGTGATTATAGTGCCTAATC
63 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC
* * *
53265 AC-GAAATGAATGAAGATCCTTACTAGAATCC
128 -CTGAAAAGAATGAGGATCATTACTAGAATCC
* * * * * * * * *
53296 ATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAGAAAGCGTATCTT
1 ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTT
* * * *
53361 GCAAAACCAAAGCATCAATATTATATATCCTTATGA
66 GCGAAACCAAAGCATCAATATCATGTATCCTAATGA
53397 AGATCCTTAC
Statistics
Matches: 1279, Mismatches: 485, Indels: 162
0.66 0.25 0.08
Matches are distributed among these distances:
157 30 0.02
158 605 0.47
159 612 0.48
160 32 0.03
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (158 bp):
ATGTTTGTCTCATTTGAAGTACGAACTTAGAATTTAGAAAAATAGGTGGGAAGAAAGTGTTTCTT
GCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTG
AAAAGAATGAGGATCATTACTAGAATCC
Found at i:52823 original size:476 final size:476
Alignment explanation
Indices: 51394--60844 Score: 10195
Period size: 476 Copynumber: 19.6 Consensus size: 476
51384 GTTGTCATCA
* * * * * * ** * *
51394 ATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAGGAAAGCGTATCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* * *
51459 GCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACGTTTATGGTGCCTAATCCTG
66 GCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * *
51524 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGGCAAACTTTGATTCTAT
131 AAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* * *
51589 CAATAACGGTAGG-AAGAAAAGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATG
196 CAATAACGGT-GGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *** * * *
51653 AAAGG-AATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGAACTTTTACGAGAATCAATGCAT
260 -AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
*
51717 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
51782 AGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATTATGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
*
51847 AATGAAGATCATTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
* * * * * *
51870 ATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGT-GTTTCT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAA-AAAATCGTTTCT
* * * * * *
51934 TGCCAAACCAAAGCGTCACTATCATGTATTCTTATGAGAAGACTATGTTTATGCTGCCTAATCCT
65 TGCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
** * * *
51999 GAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTA
130 GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * * * * *
52064 TCAATAACGGTAGAAAGAAAGGCTTCTCTTGAGACCCCAAAGCATTAATGTC-TTTATCATAATG
195 TCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * * * *
52128 AAAGG-AATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTGACTAGAATCAATGCAT
260 -AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* *
52192 GACTCATTTAAAGTACAAACTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * **
52257 AGAAAACCATCAATATCATGTATCATGATGAGGAGAATGTGTTTATACTGCCTAATCCCGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
*
52322 AATGAATATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
* * * * * * ** * *
52345 ATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGACGAAAGCGTATCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* * *
52410 GCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAAACTACGTTTATGGTGCCTAATCCTG
66 GCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * *
52475 AAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTTAGAGGCAAACTTTGATTCTAT
131 AAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* * *
52540 CAATAACGGTAGG-AAGAAAAGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATG
196 CAATAACGGT-GGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *** * * *
52604 AAAGG-AATGTGTTTTTGGTTCCCAATCTTTTCAAGATTAGGGACTTTTATGAGAATCAATGCAT
260 -AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
*
52668 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
52733 AGAAAACCATAAATATCATTTATCCTAATGAGGAGATTGTGTTTATGGTGCCTAATTATGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
52798 AATGAAGATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
* * * * * *
52821 ATGTTTGTCTCATTTGAGGTAGGAACTTAGAATTTAGAAAAATTGGTGGGAAGAAAGT-GTTTCT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAA-AAAATCGTTTCT
* * * * *
52885 TGCCAAACCAAAGCGTCACTATCATGTATCCTTATGAGAAGACTATGTTTATGCTGCCTAATCCT
65 TGCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
** * * *
52950 GAAAAGATTGGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGTGACAAACTTTGATTCTA
130 GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * ** * * *
53015 TCAATAACGATAGAAAGAAAGGCTTCTCTTAAGACCCCAAAGCATTAATGTC-TTTATCCTAATG
195 TCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * * *
53079 AAAGG-AATGTGTTTTTGGTTCCCATTCTTGAAAAGAATGGGGACTTTTATGAGAATCAATGCAT
260 -AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * *
53143 GTCTCATTTAAAGTACAAACTTCGATTTTAAGAAAAATAAGGCAAAGAAAAGATATCCATGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
53208 AGAAAACCATCAATATCATGTAGCATGATGAGGAGAATGTGATTATAGTGCCTAATCACGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
53273 AATGAAGATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
* * * * * * * * * *
53296 ATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAATAGGTGGGAAGAAAGCGTATCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* * * * ** * *
53361 GCAAAACCAAAGCATCAATATTATATATCCTTAT--GAAGATCCTTACTAGAATCCATGTTTGTC
66 GCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGA--C-TA-T-G--TTTATG-GTGCC
* * * ***** ** ** * * * * *** * ** *
53424 TCAT-TTGAGGAATGAACTTATACTTTACAAAAATTGGTTGGAAGAAAG-CGTATCTTGCGAAAC
123 TAATCCTGA--AAAGAAAGGGGA--TTAGTATGAGT-ATT-CATGTTTGTCTTAT-TTAAGAGA-
* ** * * ** * ** * * * * ** *
53487 CAAAGCGTCAATATCATGTAT-CCTTATGAGAAA-ACTATGTTTATGGTGCCTA-ACCCTGAAAA
180 CAAA-CTTTGATTTTATCAATAAC-GGTG-GAAAGA-AAAGCTTCTCTTG-CGACA-CC------
* * * * * * * * ** *
53549 GAAAAGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGAAA--ACTTTGATTCTATCAA
233 --AAA-GCATCA--AT--G---TCATG--TATCCTAATGAAG-GAAATGAGTTT--TTGGATC-C
* *** * * * * * * * *
53612 TAA-CGGTTG-AAAGAAAGGCTTCTCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAA
282 TAATC--TTGAAAAGAATGGGGACT-TT--TA---C-GAGAATCAATG-CATGTCT-C-ATTTAA
****** * ** * * * *
53675 AGGATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTC
335 A-G-TACAAACTTTGATT-TTAA---GGAAAATAA---GG-C----A-AAGAA--AA-G-ATTTC
*** * ** * * * * *** * * * * *
53740 TC-TTTTAAAGTACAAA-CTTTGATTTTAAGGAAAATAAGGCA-AAGAAAAG-ATTTCTA-TG-C
381 -CATGCAAAAG-A-AAACCATCAATATCATGTATCCTAATG-AGGAG-AATGTGTTTATAGTGCC
* *** * *
53799 -AA--AAGAAAACCATCAATATCCTTTATCCTATTAAGGAGAAT--
441 TAATCATGAAATGAATGAAGATCC-TTA--C---T----AGAATCC
* ** * * * * * * * * **** **
53840 ATGTTTATAGC--CT-AATCACGAAATAAATGAAGATCCTTACCAGAATCCGAGTTTGTCTCATT
1 ATGTTTGTCTCATTTGAAGCACGAACT---T-AAAAT--TTACAAAAAT-TG-G-TGGGAAAAAA
* *** * * * * * ** * * *
53902 TGAGGCACGAACTGAGAATTTACAAAAATTATGGGAA-AAAAGTGT-TTCTT-TCA-AA-ACCAA
57 T-CGTTTC---TTGCGAA---AC-CAAATCAT--CAATATCA-TGTATCCTTATGAGAAGA-C-T
* ** * * *** * * * * ***
53962 ATAATCAAT-AT-CCTATATCC-GTATAAG-AAGACTATGT-TTATGGTGCCTAATCCTGAAAAG
109 AT-GTTTATGGTGCCTA-ATCCTG-AAAAGAAAGGGGAT-TAGTAT-GAG--TATTCATG-TTTG
*** * * ** * *** * **** ** *
54022 AATGGGATTAGTATGAGTATTC-AATTTTGTATTAATTAAGAGACAAATTTTGATTTTACCGATA
166 --TCTTATT--TAAGAG-A--CAAACTTTG-ATT--TTATCA-ATAACGGTGGAAAGAAAAGCT-
* * * ** * * * * * * **
54086 AC-GTTG-GAAAAAAAAGC--C--TCTCTTGCGA-CACCAAAGCA-TCAATGTCATGTATCCTAA
219 TCTCTTGCGACACCAAAGCATCAATGTCATG-TATC-CTAATGAAGGAAATG--A-GT-T--T--
* * * *
54143 TGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAATGGAGACTTTTACGAGAATCAATGCA
274 ----------------TTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCA
* * * *
54208 TGCCTCATTTAAAGTA-AAAGCATTGGTTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCA
323 TGTCTCATTTAAAGTACAAA-CTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCA
* *
54272 AAGGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAA
387 AAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAA
* * *
54337 TGAACGAAGATCTTTCCTAGAATCC
452 TGAATGAAGATCCTTACTAGAATCC
* * * * * * * * * **
54362 ATGTTTGTCTTATTTGAAGAATGAATTTATACA-TTACAAAACTAGGTGGGAAGAAAGCGGATCT
1 ATGTTTGTCTCATTTGAAGCACGAACTTA-AAATTTACAAAAATTGGTGGGAAAAAATCGTTTCT
* * * *
54426 TGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACAATGTTTATGCTGCCTAATCCT
65 TGCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
54491 GAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTATCTTATTTAAGAGATAAACTTTGATTCTA
130 GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * *
54556 TCAACAACAGTGGAAAGACAAGCTTCTCTTGCGACA-CAAAGCATCAATGTCATGTATCCCAATG
195 TCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
* * * *
54620 AAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAGTTTAACGAGAATCAATGCTTG
260 AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATG
* * * * * *
54685 TCTCATTTAAAGTACAAACATTGATTTTATGGAAAATTAGGCAAAGAATAGATTTCCGTGTAAAA
325 TCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * * **
54750 GAAAACCATCAACATCAAGTATCTTGATGAGGAGAATTTGTTTATAGTGCCTAGTCACAAAATGA
390 GAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
*
54815 AAGAAGATCCTTACTAGAATCC
455 ATGAAGATCCTTACTAGAATCC
**
54837 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGAAGGAAAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* * *
54902 GCGAAACCAAATCATCAATATCCA-ATATCCTTATGAGAAGACTATGTTTATGGTACTTAATCC-
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * *
54965 CATAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATTTAAAAGACAAACTTTGATTTT
130 GA-AAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* *
55030 ATCATTAACGGTGGAAA-AAAAGCTTCTCTTGCGACACCAAAGCATCATTGTCATGTATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* *
55094 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAGAAGAATGGGGACTTTTACGGGAATCAATGCAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * * *
55159 GTCTCATTTAAAATATAAACTTTGGTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
55224 AGAAAACCATCAATATCAAT-TATCCTAATGAGGAAAATATGTTTATAGTGCCTAATCACGAAAT
389 AGAAAACCATCAATATC-ATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAT
*
55288 AAATGAAGATCCTTACTAGAATCC
453 GAATGAAGATCCTTACTAGAATCC
* * * * * * * * *
55312 ATATTTGTCTCATTTGAGGCACGAACATAGAATTTACAACAATT-ATTGCAAAAAAGCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* * * * *
55376 GCGAAACCAAATCATCAACATCCTGTATCCGTATAAGAAGACTATGTTTATGGTGCCTAATCCTC
66 GCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * * * *
55441 AAAAG-AATGGGATTAGTATGAGTATTCAAGTTTGTATTATTTAAGAGATAAATTTTGATTATAC
131 AAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
* * * * * *
55505 CAATGACGTTGGAAAGAAAAGCCTCTTTTGCAACACCAAAGCATCAGTGTCATGTATCCTAATGA
196 CAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * *
55570 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGGGAATCAATGCATGT
261 AGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGT
* *
55635 CTCATTTAGAGTACAAA-TTTCGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATACAAAA
326 CTCATTTAAAGTACAAACTTT-GATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
** * * *
55699 GAAAACCATCAATATGTTTTATCCTAATGAGGAGAATATGTTTATA--GCCTAATCACGAAATGA
390 GAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
55762 ATGAAGATCCTTACTAGAATCC
455 ATGAAGATCCTTACTAGAATCC
55784 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGAT-GGAAAAAATCGTTTCT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGG-TGGGAAAAAATCGTTTCT
*
55848 TGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-C
65 TGCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
*
55911 TCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT
129 T-GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTT
* * *
55976 TATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAA
193 TATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* *
56041 TGAAGGAAAAGAGTTTTTGGATCCTGATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCA
258 TGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCA
* * *
56106 TGTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAGAGAAAAGATTTCCATGCAA
323 TGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* * *
56171 AAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAAT
388 AAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAT
56236 GAATGAAGATCCTTACTAGAATCC
453 GAATGAAGATCCTTACTAGAATCC
* * **
56260 ATGTTTGTCTGATTTGAAGCATGAACTTAAAATTTACAAAAATTGAAGGGAAAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* *
56325 GCGAAACAAAATCATTAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CT
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* *
56388 CGAAAAG-AATGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAGTTTGATTTT
130 -GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* *
56452 ATCATTAACGGTGGAAA-AAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * *
56516 GAAGGAAAAGAGTTTTTGGATCCTAATCTTGAAAAGAATTGGGACTTTTATGAGAATCAATGCAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * *
56581 GTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAGAGAAAAGATTTCCATGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
56646 AGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
56711 AATGAAGATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
**
56734 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGACGGAAAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
*
56799 GCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CT
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
*
56862 CGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
130 -GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* * *
56927 ATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* *
56992 GAAGGAAAAGAGTTTTTGGATCCTGATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * *
57057 GTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAGAGAAAAGATTTCCATGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
57122 AGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
57187 AATGAAGATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
* * **
57210 ATGTTTGTCTGATTTGAAGCATGAACTTAAAATTTACAAAAATTGAAGGGAAAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* *
57275 GCGAAACAAAATCATTAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CT
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* *
57338 CGAAAAG-AATGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAGTTTGATTTT
130 -GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* *
57402 ATCATTAACGGTGGAAA-AAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * *
57466 GAAGGAAAAGAGTTTTTGGATCCTAATCTTGGAAAGAATTGGGACTTTTACGAGAATCAATGCAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * * *
57531 CTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * *
57596 AGAAGACCATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAATCACGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
*
57661 AATGAAAATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
**
57684 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGAAGGGAAAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
*
57749 GCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CT
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* *
57812 CGAAAAGAATGGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
130 -GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
** * *
57877 ATCTTTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* *
57942 GAAGGAAAAGAGTTTTTGGATCCTAATCTTGAAAAGAATTGGGACTTTTACGAGAATCAATGCAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * *
58007 GTCTCATTTAAAGTACAAACATTGATTTTATGGAAAATAAGGCAGAGAAAAGATTTCCATGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
58072 AGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
58137 AATGAAGATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
**
58160 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGAAGGGAAAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
*
58225 GCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CT
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* *
58288 CGAAAAGAATGGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
130 -GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
** * * *
58353 ATCTTTAACGGTGGAAAAAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* *
58418 GAAGGAAAAGAGTTTTTGGATCCTAATCTTGAAAAGAATTGGGACTTTTACGAGAATCAATGCAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * * *
58483 GTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGTAGAGAAAAGATTTCCATGCAAA
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * *
58548 AGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
58613 AATGAAGATCCTTACTAGAATCC
454 AATGAAGATCCTTACTAGAATCC
**
58636 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGAAGGGAAAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
*
58701 GCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CT
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* *
58764 CGAAAAGAATGGGGGTTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
130 -GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* * * *
58829 GTCATTAACGGTGGAAAAAAAAGCTTCTCTTCCGACACCAAAGCATCAATGTCATGTATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
*
58894 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATAGGGACTTTTACGAGAATCAATGCAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
*
58959 GTCTCATTTAAAGTACAAACTTT-AGTTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATGCAA
324 GTCTCATTTAAAGTACAAACTTTGA-TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* * *
59023 AAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATATGTTTATAGTGCCTAATCATGAAAT
388 AAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAT
59088 GAATGAAGATCCTTACTAGAATCC
453 GAATGAAGATCCTTACTAGAATCC
* * * * *
59112 ATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAAAAAAATT-ATGGGAAAAAAACGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* * **
59176 GCGAAACCAAATCATCAATATCCTGTATCCGTAAAAGAAGACTATGTTTATGGTGCCTAATCCTG
66 GCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * * * *
59241 AAAAGAATA--GGATTAGTATGAGTTTTCAAGTTTGTATTATTTAAGAGACAAATTTTTATTTTA
131 AAAAGAA-AGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * *
59304 TCATTAACGGTGGAAAGAAAAGCTTCTCTTGC-ACCACAAAAGCATCAATGTCATGTGTGCTAAT
195 TCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAAT
* * * * ** *
59368 GAAGGGAATGTGTTTTTGG-TTCTCAATCTTGGAAAGAATGGAAACTTTTATGAGAATCAATGCA
259 GAAGGAAATGAGTTTTTGGATCCT-AATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCA
* *
59432 TGCCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAATGCAAAGAAAAGATTTCCATGCAA
323 TGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* * * * * *
59497 AAGAAAACCATCTACATCATTTATCCTAATGAAGATAATGTGTTTATAGTGCCTAATCACGAAAT
388 AAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAT
*
59562 GAATGAAGATCCTTACTGGAATCC
453 GAATGAAGATCCTTACTAGAATCC
* * * * * *
59586 ATGATTGTCTCATTTGAGGCAGGAACTTAGAATTTACAAAAATTGATGGGAAGAAAGT-GTTTCT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAA-AAAATCGTTTCT
* * * * *
59650 TGCGAAACCAAAGCATCACTATCATGTATCCTCACGAGAAGACTATGTTTATGGTGCCTAATCCA
65 TGCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * *
59715 GAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTATCTTATTTAAGAGACAAACTTTGATTCTA
130 GAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * * *
59780 TCAATAACAGTGGAAAGACATGCTTCTCTTGCGATACCAAAGCATCAATGTCATGCATCCTAATG
195 TCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
*
59845 AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAATAATGGGGACTTTTACGAGAATCAATGCATG
260 AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATG
* ** * *
59910 TCTCATTTAAAGTAAAAACTTTGATTTTTTGGAAAATAAGGCAACGAAAAGAATTCCATGCAAAA
325 TCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * *
59975 GAAAACCATCAATATCACGTATCCTGATGAGGAGATTGTGTTTATAGTGCCTAATCATGAAATGA
390 GAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
60040 ATGAAGATCCTTACTAGAATCC
455 ATGAAGATCCTTACTAGAATCC
* * *
60062 ATGTTTATCTCATTTAAAGCACGAACTTAAAATTTACAAAAATTGGAGGG-AAAAATCGTTTCTT
1 ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
* * *
60126 GCGAAACAAAATCATCAATATCCA-GTATCGTTATGAGAAGACTATGTTTATGGTGCCTAATCCC
66 GCGAAACCAAATCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
** *
60190 GAAAAGAATTGGGATTAGTATGAGTAATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
130 GAAAAGAAAGGGGATTAGTATGAGT-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* *
60255 ATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAATGCATCAATGTCATGTATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * *
60320 GAAGGAAATGAGTTTTTGGATCCTAATTTTAAAAAGAATGGGGACTTTTACGGGAATTAATGTAT
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCAT
* * * * *
60385 GTCTCATTTAAAGTACAAACTTTGGTTTTAAGGAAAATACGGCAAAGAAAAGATTTTCATGCGAG
324 GTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
* * * *
60450 AGAAAACCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAATTATGAAATG
389 AGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
*
60515 AATGAAGATCCTTACTAGAATCT
454 AATGAAGATCCTTACTAGAATCC
* * * *
60538 ATGTTTGTCTCATTTGAGGTACGAAC-TAGAGAATTTACAAAAATT-ATGGGAAAAAAACGTTTC
1 ATGTTTGTCTCATTTGAAGCACGAACTTA-A-AATTTACAAAAATTGGTGGGAAAAAATCGTTTC
* * * * *
60601 CTGCGAAACCAAATCATCAATATCCTGTATCCGTATAAGAAGACTATGTTTATGGTGCCGAATCC
64 TTGCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC
** * * * * * *
60666 TGAAAA-AAATAGCATTAGTATGAATTTTCAAGTTTGTATTATTTAAGAGACAAATTTTGATTTT
129 TGAAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* * * * * * * *
60730 ACCGATAACGTTGGAACGAAAAGCCTCTTTTGCGACAGCAAAGCATCAATGTCAAGTATCCTAAT
194 ATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * *
60795 GAAGGGAATGTGTTTTTGGTTCCAAATCTGGAAAAGAATGGAGACTTTTA
259 GAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTA
60845 ATCACGAACT
Statistics
Matches: 7721, Mismatches: 1003, Indels: 503
0.84 0.11 0.05
Matches are distributed among these distances:
472 79 0.01
473 149 0.02
474 1683 0.22
475 1968 0.25
476 3090 0.40
477 95 0.01
478 1 0.00
480 7 0.00
481 6 0.00
482 5 0.00
484 6 0.00
485 6 0.00
486 7 0.00
487 5 0.00
488 11 0.00
489 10 0.00
490 3 0.00
493 1 0.00
494 1 0.00
495 18 0.00
496 8 0.00
497 2 0.00
498 13 0.00
499 20 0.00
500 1 0.00
501 7 0.00
503 5 0.00
506 13 0.00
507 10 0.00
508 28 0.00
509 25 0.00
510 8 0.00
511 11 0.00
512 10 0.00
514 1 0.00
515 3 0.00
516 3 0.00
517 1 0.00
518 9 0.00
519 12 0.00
520 6 0.00
521 6 0.00
522 11 0.00
523 6 0.00
524 11 0.00
525 27 0.00
526 9 0.00
527 9 0.00
528 4 0.00
529 2 0.00
530 17 0.00
531 2 0.00
532 2 0.00
533 1 0.00
534 2 0.00
535 7 0.00
536 20 0.00
537 4 0.00
538 5 0.00
539 10 0.00
540 13 0.00
541 26 0.00
542 11 0.00
543 7 0.00
544 10 0.00
545 7 0.00
546 7 0.00
547 15 0.00
548 11 0.00
549 4 0.00
550 11 0.00
551 7 0.00
552 6 0.00
553 4 0.00
554 17 0.00
555 18 0.00
556 8 0.00
557 15 0.00
558 10 0.00
559 8 0.00
560 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAATTGGTGGGAAAAAATCGTTTCTT
GCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG
AAAAGAAAGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT
CAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
AGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGT
CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
AAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAA
TGAAGATCCTTACTAGAATCC
Found at i:53487 original size:119 final size:119
Alignment explanation
Indices: 53274--53515 Score: 421
Period size: 119 Copynumber: 2.0 Consensus size: 119
53264 CACGAAATGA
*
53274 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCTTTTGAGGAATGAACTTATACTTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
*
53339 AGGTGGGAAGAAAGCGTATCTTGCAAAACCAAAGCATCAATATTATATATCCTT
66 AGGTGGGAAGAAAGCGTATCTTGCAAAACCAAAGCATCAATATCATATATCCTT
53393 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
* * * * *
53458 TGGTTGGAAGAAAGCGTATCTTGCGAAACCAAAGCGTCAATATCATGTATCCTT
66 AGGTGGGAAGAAAGCGTATCTTGCAAAACCAAAGCATCAATATCATATATCCTT
53512 ATGA
1 ATGA
53516 GAAAACTATG
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
119 116 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (119 bp):
ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
AGGTGGGAAGAAAGCGTATCTTGCAAAACCAAAGCATCAATATCATATATCCTT
Found at i:55321 original size:950 final size:951
Alignment explanation
Indices: 53393--60844 Score: 10735
Period size: 950 Copynumber: 7.8 Consensus size: 951
53383 ATATATCCTT
* * * * *
53393 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
*** * * * * * * *
53458 TGGTTGGAAGAAAGCGTATCTTGCGAAACCAAAGCGTCAATAT-CATGTATCCTTATGAGAAAAC
66 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGAC
* * *
53522 TATGTTTATGGTGCCTAACCCTGAAAAGAAAAGGGATTAGTATGAGTATTCTTGTTTGTCTTATT
130 TATGTTTATGGTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* * * *
53587 TAAGAGA-AAACTTTGATTCTATCAATAACGGTTGAAAGAAAGGCTTCTCTTGCGACCCCAAAGC
195 TAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGC
* * * ** * *
53651 ATTAATGTCTTGTATCCTAATGAAAGG-ATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGGG
260 ATCAATGTCATGTATCCTAATG-AAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGGGG
*
53715 ACTTTTACGAGAATCAATGCATGTCTCTTTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
324 ACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
* * * * *
53780 AAAGAAAAGATTTCTATGCAAAAGAAAACCATCAATATCCTTTATCCTATTAAGGAGAATATGTT
389 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGTT
* * *
53845 TATA--GCCTAATCACGAAATAAATGAAGATCCTTACCAGAATCCGA-GTTTGTCTCATTTGAGG
454 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCC-ATGTTTGTCTCATTTGAAG
* * * * * * *
53907 CACGAACTGAGAATTTACAAAAATT-ATGGGAAAAAAGT-GTTTCTTTCAAAACCAAATAATCAA
518 CACGAACTTAAAATTTACAAAAATTGA-AGGAAAAAA-TCGTTTCTTGCGAAACAAAATCATCAA
* *
53970 TATCCTA-TATCCGTATAAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAAGAAT-GGGATTA
581 TATCC-AGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTA
* * * * *
54032 GTATGAGTATTCAAT-TTTGTATTAATTAAGAGACAAATTTTGATTTTACCGA-TAACGTTGGAA
644 GTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC-ATTAACGGTGGAA
* * * *
54095 AAAAAAGCCTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
707 AAAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTT
* * * * *
54160 TGGTTCCCAATATTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGCCTCATTTAAAGTA-
772 TGGATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTAC
* * * * *
54224 AAAGCATTGGTTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAGGAAAACCATCAATA
837 AAA-CTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATA
*
54289 TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
901 TCAATTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
* * * * * * * * *
54340 ACGAAGATCTTTCCTAGAATCCATGTTTGTCTTATTTGAAGAATGAATTTATACA-TTACAAAAC
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTA-AAATTTACAAAAA
* ** * * ** * * *
54404 TAGGTGGGAAGAAAGCGGATCTTGTGAAACCAAAGCATCAATAT-CATGTATCCTTATGAGAAGA
65 TTGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGA
* * * * *
54468 CAATGTTTATGCTGCCTAATCCTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTATCTTAT
129 CTATGTTTATGGTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * *
54533 TTAAGAGATAAACTTTGATTCTATCAACAACAGTGGAAAGACAAGCTTCTCTTGCGACA-CAAAG
194 TTAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAG
*
54597 CATCAATGTCATGTATCCCAATGAAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGGGG
259 CATCAATGTCATGTATCCTAATGAAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGGGG
* * * * * *
54662 AGTTTAACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACATTGATTTTATGGAAAATTAGGC
324 ACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
* * * * * * * * *
54727 AAAGAATAGATTTCCGTGTAAAAGAAAACCATCAACATCAAGTATCTTGATGAGGAGAATTTGTT
389 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGTT
* * *
54792 TATAGTGCCTAGTCACAAAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGC
454 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGC
*
54857 ACGAACTTAAAATTTACAAAAATTGGAAGGAAAAAATCGTTTCTTGCGAAACCAAATCATCAATA
519 ACGAACTTAAAATTTACAAAAATT-GAAGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATA
* * * *
54922 TCCAATATCCTTATGAGAAGACTATGTTTATGGTACTTAATC-CCATAAAGAATGGGGATTAGTA
583 TCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGA-AAAGAATGGGGATTAGTA
* *
54986 TGAGTATTCATGTTTGTCATATTTAAAAGACAAACTTTGATTTTATCATTAACGGTGG-AAAAAA
647 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAA
* *
55050 AGCTTCTCTTGCGACACCAAAGCATCATTGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGAT
712 AGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGGAT
* * * *
55115 CCTAATCTTGAGAAGAATGGGGACTTTTACGGGAATCAATGCATGTCTCATTTAAAATATAAACT
777 CCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACT
* * *
55180 TTGGTTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAATT
842 TTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAATT
* * * *
55245 ATCCTAATGAGGAAAATATGTTTATAGTGCCTAATCACGAAATAA
907 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
* * * * *
55290 ATGAAGATCCTTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGAATTTACAACAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
** * * * * * * *
55355 T-ATTGCAAAAAAGCGTTTCTTGCGAAACCAAATCATCAACATCCTGTATCCGTATAAGAAGACT
66 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
* * *
55419 ATGTTTATGGTGCCTAATCCTCAAAAG-AATGGGATTAGTATGAGTATTCAAGTTTGTATTATTT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * * * * * * *
55483 AAGAGATAAATTTTGATTATACCAATGACGTTGGAAAGAAAAGCCTCTTTTGCAACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCA
* * ** * * *
55548 TCAGTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* *
55613 TTTTACGGGAATCAATGCATGTCTCATTTAGAGTACAAA-TTTCGATTTTAAGGAAAATAAGGCA
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT-GATTTTAAGGAAAATAAGGCA
* ** * * *
55677 AAGAAAAGATTTCCATACAAAAGAAAACCATCAATATGTTTTATCCTAATGAGGAGAATATGTTT
390 AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGTTT
55742 ATA--GCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCA
455 ATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCA
*
55805 CGAACTTAAAATTTACAAAAATTGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATAT
520 CGAACTTAAAATTTACAAAAATT-GAAGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATAT
55870 CCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATG
584 CCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATG
55935 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAG
649 AGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAG
*
56000 CTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATCC
714 CTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGGATCC
* *
56065 TGATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTT
779 TAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT
* *
56130 GATTTTATGGAAAATAAGGCAGAGAAAAGATTTCCATGCAAAAGAAGACCATCAATATC-ATGTA
844 GATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAAT-TA
* *
56194 TCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGA
908 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
* *
56238 ATGAAGATCCTTACTAGAATCCATGTTTGTCTGATTTGAAGCATGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
*
56303 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATTAATATCCAGTATCCTTATGAGAAGACT
66 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
56368 ATGTTTATGGTGCCTAAT-CTCGAAAAG-AATGGGATTAGTATGAGTATTCATGTTTGTCTTATT
131 ATGTTTATGGTGCCTAATCCT-GAAAAGAAATGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* *
56431 TAAGAGACAAAGTTTGATTTTATCATTAACGGTGGAAA-AAAAGCTTCTCTTGCGACACCAAAGC
195 TAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGC
* *
56495 ATCAATGTCATGCATCCTAATGAAGGAAA-AGAGTTTTTGGATCCTAATCTTGAAAAGAATTGGG
260 ATCAATGTCATGTATCCTAATGAAGGAAATA-AGTTTTTGGATCCTAATCTTGAAAAGAATGGGG
* * *
56559 ACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGC
324 ACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
* * *
56624 AGAGAAAAGATTTCCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTT
389 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGTT
* *
56689 TATGGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGC
454 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGC
*
56754 ACGAACTTAAAATTTACAAAAATTGGACGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATA
519 ACGAACTTAAAATTTACAAAAATT-GAAGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATA
56819 TCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTAT
583 TCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTAT
56884 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAA
648 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAA
*
56949 GCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATC
713 GCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGGATC
* *
57014 CTGATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGT
778 CTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
* *
57079 TGATTTTATGGAAAATAAGGCAGAGAAAAGATTTCCATGCAAAAGAAGACCATCAATATC-ATGT
843 TGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAAT-T
* *
57143 ATCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGA
907 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
* *
57188 ATGAAGATCCTTACTAGAATCCATGTTTGTCTGATTTGAAGCATGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
*
57253 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATTAATATCCAGTATCCTTATGAGAAGACT
66 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
57318 ATGTTTATGGTGCCTAAT-CTCGAAAAG-AATGGGATTAGTATGAGTATTCATGTTTGTCTTATT
131 ATGTTTATGGTGCCTAATCCT-GAAAAGAAATGGGATTAGTATGAGTATTCATGTTTGTCTTATT
* *
57381 TAAGAGACAAAGTTTGATTTTATCATTAACGGTGGAAA-AAAAGCTTCTCTTGCGACACCAAAGC
195 TAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGC
* * *
57445 ATCAATGTCATGCATCCTAATGAAGGAAA-AGAGTTTTTGGATCCTAATCTTGGAAAGAATTGGG
260 ATCAATGTCATGTATCCTAATGAAGGAAATA-AGTTTTTGGATCCTAATCTTGAAAAGAATGGGG
* * *
57509 ACTTTTACGAGAATCAATGCATCTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGC
324 ACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
* *
57574 AAAGAAAAGATTTCCAAGCAAAAGAAGACCATCAATATCATGTATCCTAATAAGGAGAATGTGTT
389 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGTT
* *
57639 TATGGTGCCTAATCACGAAATGAATGAAAATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGC
454 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGC
57704 ACGAACTTAAAATTTACAAAAATTGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATA
519 ACGAACTTAAAATTTACAAAAATTGAA-GGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATA
*
57769 TCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGGTTAGTAT
583 TCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTAT
*
57834 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCTTTAACGGTGGAAAAAAAA
648 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAA
*
57899 GCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATC
713 GCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGGATC
* *
57964 CTAATCTTGAAAAGAATTGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACAT
778 CTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
* *
58029 TGATTTTATGGAAAATAAGGCAGAGAAAAGATTTCCATGCAAAAGAAGACCATCAATATC-ATGT
843 TGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAAT-T
* *
58093 ATCCTAATTAGGAGAATGTGTTTATGGTGCCTAATCATGAAATGA
907 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
58138 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
58203 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
66 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
*
58268 ATGTTTATGGTGCCTAAT-CTCGAAAAG-AATGGGGGTTAGTATGAGTATTCATGTTTGTCTTAT
131 ATGTTTATGGTGCCTAATCCT-GAAAAGAAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTAT
** * *
58331 TTAAGAGACAAACTTTGATTTTATCTTTAACGGTGGAAAAAAAAGCTTCTCTTGTGACACCAAAG
194 TTAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAG
* *
58396 CATCAATGTCATGCATCCTAATGAAGGAAA-AGAGTTTTTGGATCCTAATCTTGAAAAGAATTGG
259 CATCAATGTCATGTATCCTAATGAAGGAAATA-AGTTTTTGGATCCTAATCTTGAAAAGAATGGG
* *
58460 GACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGG
323 GACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGG
* * * *
58525 TAGAGAAAAGATTTCCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGT
388 CAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGT
* *
58590 TTATGGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAG
453 TTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAG
58655 CACGAACTTAAAATTTACAAAAATTGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAAT
518 CACGAACTTAAAATTTACAAAAATTGAA-GGAAAAAATCGTTTCTTGCGAAACAAAATCATCAAT
*
58720 ATCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGGTTAGTA
582 ATCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTA
*
58785 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTGTCATTAACGGTGGAAAAAAA
647 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAA
* *
58850 AGCTTCTCTTCCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGAT
712 AGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGGAT
*
58915 CCTAATCTTGAAAAGAATAGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACT
777 CCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACT
* * *
58980 TT-AGTTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATT
842 TTGA-TTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAAT
* *
59044 TATCCTAATGAGGAAAATATGTTTATAGTGCCTAATCATGAAATGA
906 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
* * *
59090 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAAAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * * * * **
59155 T-ATGGGAAAAAAACGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCGTAAAAGAAGACT
66 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
* * * *
59219 ATGTTTATGGTGCCTAATCCTGAAAAG-AATAGGATTAGTATGAGTTTTCAAGTTTGTATTATTT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* * * *
59283 AAGAGACAAATTTTTATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGC-ACCACAAAAGC
196 AAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA-CACCAAAGC
* * * ** * * **
59347 ATCAATGTCATGTGTGCTAATGAAGGGAATGTGTTTTTGG-TTCTCAATCTTGGAAAGAATGGAA
260 ATCAATGTCATGTATCCTAATGAAGGAAATAAGTTTTTGGATCCT-AATCTTGAAAAGAATGGGG
* * *
59411 ACTTTTATGAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAATGC
324 ACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
* * * *
59476 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCTACATCATTTATCCTAATGAA-GATAATGTGT
389 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATGTGT
* * *
59540 TTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTGGAATCCATGATTGTCTCATTTGAGG
453 TTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAG
* * * * * * *
59605 CAGGAACTTAGAATTTACAAAAATTGATGGGAAGAAAGT-GTTTCTTGCGAAACCAAAGCATCAC
518 CACGAACTTAAAATTTACAAAAATTGA-AGGAA-AAAATCGTTTCTTGCGAAACAAAATCATCAA
* * *
59669 TAT-CATGTATCCTCACGAGAAGACTATGTTTATGGTGCCTAATC-CAGAAAAGAAAGGGGATTA
581 TATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTA
* * * * * *
59732 GTATGAGTATTCTTGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAGTGGAAAG
644 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAA
* * *
59797 ACATGCTTCTCTTGCGATACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTG
709 AAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTG
* *
59862 GATCCTAATCTTGAAAATAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTAAAA
774 GATCCTAATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAA
* * *
59927 ACTTTGATTTTTTGGAAAATAAGGCAACGAAAAGAATTCCATGCAAAAGAAAACCATCAATATCA
839 ACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCA
** * *
59992 CGTATCCTGATGAGGAGATTGTGTTTATAGTGCCTAATCATGAAATGA
904 ATTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
* *
60040 ATGAAGATCCTTACTAGAATCCATGTTTATCTCATTTAAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* *
60105 TGGAGGG-AAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCGTTATGAGAAGACT
66 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
* * *
60169 ATGTTTATGGTGCCTAATCCCGAAAAGAATTGGGATTAGTATGAGTAATTCAGGTTTGTCTTATT
131 ATGTTTATGGTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGT-ATTCATGTTTGTCTTATT
* *
60234 TAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAATGC
195 TAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGC
* * *
60299 ATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATTTTAAAAAGAATGGGGA
260 ATCAATGTCATGTATCCTAATGAAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGA
* * * * *
60364 CTTTTACGGGAATTAATGTATGTCTCATTTAAAGTACAAACTTTGGTTTTAAGGAAAATACGGCA
325 CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCA
* * * * *
60429 AAGAAAAGATTTTCATGCGAGAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATATGTTT
390 AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGTTT
* * * * *
60494 ATAGTGCCTAATTATGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGTA
455 ATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCA
* * * *
60559 CGAAC-TAGAGAATTTACAAAAATT-ATGGGAAAAAAACGTTTCCTGCGAAACCAAATCATCAAT
520 CGAACTTA-A-AATTTACAAAAATTGA-AGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAAT
* * * * * * *
60622 ATCCTGTATCCGTATAAGAAGACTATGTTTATGGTGCCGAATC-CTGAAAAAAAT-AGCATTAGT
582 ATCCAGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGT
* * * * * * * **
60685 ATGAATTTTCAAGTTTGTATTATTTAAGAGACAAATTTTGATTTTACCGA-TAACGTTGGAACGA
646 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC-ATTAACGGTGGAAAAA
* * * * * * *
60749 AAAGCCTCTTTTGCGACAGCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGG
710 AAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGG
* * * *
60814 TTCCAAATCTGGAAAAGAATGGAGACTTTTA
775 ATCCTAATCTTGAAAAGAATGGGGACTTTTA
60845 ATCACGAACT
Statistics
Matches: 5957, Mismatches: 494, Indels: 104
0.91 0.08 0.02
Matches are distributed among these distances:
946 4 0.00
947 584 0.10
948 605 0.10
949 475 0.08
950 2760 0.46
951 382 0.06
952 1127 0.19
953 20 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (951 bp):
ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
ATGTTTATGGTGCCTAATCCTGAAAAGAAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
AAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCA
TCAATGTCATGTATCCTAATGAAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAA
AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATAAGGAGAATGTGTTTA
TAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCAC
GAACTTAAAATTTACAAAAATTGAAGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCC
AGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAG
TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCT
TCTCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGGATCCTA
ATCTTGAAAAGAATGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA
TTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAATTATCC
TAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGA
Found at i:55929 original size:474 final size:474
Alignment explanation
Indices: 53393--60844 Score: 10556
Period size: 476 Copynumber: 15.7 Consensus size: 474
53383 ATATATCCTT
* * * * *
53393 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * * * * * * *
53458 TGGTTGGAAGAAAGCGTATCTTGCGAAACCAAAGCGTCAATAT-CATGTATCCTTATGAGAAAAC
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGAC
* ** *
53522 TATGTTTATGGTGCCTAA-CCCTGAAAAGAAAAGGGATTAGTATGAGTATTCTTGTTTGTCTTAT
130 TATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * *
53586 TTAAGAGA-AAACTTTGATTCTATCAATAACGGTTGAAAGAAAGGCTTCTCTTGCGACCCCAAAG
194 TTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAG
* * * * * *
53650 CATTAATGTCTTGTATCCTAATGAAAGG-ATTGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGG
259 CATCAATGTCATGTATCCTAATG-AAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGG
* *
53714 GACTTTTACGAGAATCAATGCATGTCTCTTTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGG
323 GACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGG
* * * * * *
53779 CAAAGAAAAGATTTCTATGCAAAAGAAAACCATCAATATCCTTTATCCTATTAAGGAGAATATGT
388 CAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGT
* *
53844 TTATAGCCTAATCACGAAATAA
453 TTATAGCCTAATCATGAAATGA
* * * *
53866 ATGAAGATCCTTACCAGAATCCGA-GTTTGTCTCATTTGAGGCACGAACTGAGAATTTACAAAAA
1 ATGAAGATCCTTACTAGAATCC-ATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAA
* * * * * *
53930 TT--ATGGGAAAAAAGT-GTTTCTTTCAAAACCAAATAATCAATATCCTA-TATCCGTATAAGAA
65 TTGGAT-GGAAAAAA-TCGTTTCTTGCGAAACAAAATCATCAATATCC-AGTATCCTTATGAGAA
*
53991 GACTATGTTTATGGTGCCTAATC-CTGAAAAGAAT-GGGATTAGTATGAGTATTCAAT-TTTGTA
127 GACTATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTC
* * * * *
54053 TTAATTAAGAGACAAATTTTGATTTTACCGA-TAACGTTGGAAAAAAAAGCCTCTCTTGCGACAC
190 TTATTTAAGAGACAAACTTTGATTTTATC-ATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACAC
* * * * *
54117 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATATTGAAAAGAA
254 CAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAA
* * * * *
54182 TGGAGACTTTTACGAGAATCAATGCATGCCTCATTTAAAGTA-AAAGCATTGGTTTTAAGGAAAA
319 TGGGGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAA-CTTTGATTTTATGGAAAA
* * *
54246 TAAGGCAAAGAAAAGATTTCCAAGCAAAGGAAAACCATCAATATCATTTATCCTAATGAGGAGAA
383 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAA
54311 TGTGTTTATAGTGCCTAATCATGAAATGA
448 TGTGTTTATA--GCCTAATCATGAAATGA
* * * * * * * * *
54340 ACGAAGATCTTTCCTAGAATCCATGTTTGTCTTATTTGAAGAATGAATTTATACA-TTACAAAAC
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTA-AAATTTACAAAAA
* * * ** * * *
54404 TAGG-TGGGAAGAAAGCGGATCTTGTGAAACCAAAGCATCAATAT-CATGTATCCTTATGAGAAG
65 TTGGAT-GGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAG
* * * * *
54467 ACAATGTTTATGCTGCCTAATC-CTGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTATCTT
128 ACTATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * ** * * *
54531 ATTTAAGAGATAAACTTTGATTCTATCAACAACAGTGGAAAGACAAGCTTCTCTTGCGACA-CAA
192 ATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAA
* *
54595 AGCATCAATGTCATGTATCCCAATGAAGGAAATAAGTTTTTGGATCCTAATCTTGAAAAGAATGG
257 AGCATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGG
* * * * *
54660 GGAGTTTAACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACATTGATTTTATGGAAAATTAG
322 GGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAG
* * * * * * * *
54725 GCAAAGAATAGATTTCCGTGTAAAAGAAAACCATCAACATCAAGTATCTTGATGAGGAGAATTTG
387 GCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTG
* **
54790 TTTATAGTGCCTAGTCACAAAATGA
452 TTTATA--GCCTAATCATGAAATGA
*
54815 AAGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * *
54880 TGGAAGGAAAAAATCGTTTCTTGCGAAACCAAATCATCAATATCCAATATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
* * * *
54945 ATGTTTATGGTACTTAATC-CCATAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCATATT
131 ATGTTTATGGTGCCTAATCTCGA-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATT
*
55009 TAAAAGACAAACTTTGATTTTATCATTAACGGTGG-AAAAAAAGCTTCTCTTGCGACACCAAAGC
195 TAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGC
* *
55073 ATCATTGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAGAAGAATGGGGA
260 ATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGA
* * * * * *
55138 CTTTTACGGGAATCAATGCATGTCTCATTTAAAATATAAACTTTGGTTTTAAGGAAAATAGGGCA
325 CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCA
* *
55203 AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAAT-TATCCTAATGAGGAAAATATGTT
390 AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATC-ATGTATCCTAATGAGGAGAATGTGTT
* *
55267 TATAGTGCCTAATCACGAAATAA
454 TATA--GCCTAATCATGAAATGA
* * * * *
55290 ATGAAGATCCTTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGAATTTACAACAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * * * * * *
55355 T--ATTGCAAAAAAGCGTTTCTTGCGAAACCAAATCATCAACATCCTGTATCCGTATAAGAAGAC
66 TGGA-TGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGAC
* *
55418 TATGTTTATGGTGCCTAATCCTC-AAAAGAAT-GGGATTAGTATGAGTATTCAAGTTTGTATTAT
130 TATGTTTATGGTGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * * * * * * * * *
55481 TTAAGAGATAAATTTTGATTATACCAATGACGTTGGAAAGAAAAGCCTCTTTTGCAACACCAAAG
194 TTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAG
* * * * * *
55546 CATCAGTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAG
259 CATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGG
* * *
55611 ACTTTTACGGGAATCAATGCATGTCTCATTTAGAGTACAAA-TTTCGATTTTAAGGAAAATAAGG
324 ACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT-GATTTTATGGAAAATAAGG
* ** * *
55675 CAAAGAAAAGATTTCCATACAAAAGAAAACCATCAATATGTTTTATCCTAATGAGGAGAATATGT
388 CAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGT
*
55740 TTATAGCCTAATCACGAAATGA
453 TTATAGCCTAATCATGAAATGA
55762 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
55827 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
55892 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
55957 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
* * *
56022 TCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATCCTGATCTTGAAAAGAATGGGGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* *
56087 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAG
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAA
* *
56152 AGAAAAGATTTCCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTA
391 AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
*
56217 TGGTGCCTAATCATGAAATGA
456 T--AGCCTAATCATGAAATGA
* *
56238 ATGAAGATCCTTACTAGAATCCATGTTTGTCTGATTTGAAGCATGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * *
56303 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATTAATATCCAGTATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
56368 ATGTTTATGGTGCCTAATCTCGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
*
56432 AAGAGACAAAGTTTGATTTTATCATTAACGGTGG-AAAAAAAGCTTCTCTTGCGACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
* * *
56496 TCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATCCTAATCTTGAAAAGAATTGGGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* * *
56561 TTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAG
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAA
* *
56626 AGAAAAGATTTCCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTA
391 AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
*
56691 TGGTGCCTAATCATGAAATGA
456 T--AGCCTAATCATGAAATGA
56712 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
*
56777 TGGACGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
56842 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
56907 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
* * *
56972 TCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATCCTGATCTTGAAAAGAATGGGGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* *
57037 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAG
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAA
* *
57102 AGAAAAGATTTCCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTA
391 AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
*
57167 TGGTGCCTAATCATGAAATGA
456 T--AGCCTAATCATGAAATGA
* *
57188 ATGAAGATCCTTACTAGAATCCATGTTTGTCTGATTTGAAGCATGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * *
57253 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATTAATATCCAGTATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
57318 ATGTTTATGGTGCCTAATCTCGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
*
57382 AAGAGACAAAGTTTGATTTTATCATTAACGGTGG-AAAAAAAGCTTCTCTTGCGACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
* * * *
57446 TCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATCCTAATCTTGGAAAGAATTGGGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* *
57511 TTTTACGAGAATCAATGCATCTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGCAA
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAA
* * *
57576 AGAAAAGATTTCCAAGCAAAAGAAGACCATCAATATCATGTATCCTAATAAGGAGAATGTGTTTA
391 AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
* *
57641 TGGTGCCTAATCACGAAATGA
456 T--AGCCTAATCATGAAATGA
*
57662 ATGAAAATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* *
57727 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
*
57792 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGGTTAGTATGAGTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
*
57857 AAGAGACAAACTTTGATTTTATCTTTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
* * *
57922 TCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATCCTAATCTTGAAAAGAATTGGGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* *
57987 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACATTGATTTTATGGAAAATAAGGCAG
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAA
* *
58052 AGAAAAGATTTCCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTA
391 AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
*
58117 TGGTGCCTAATCATGAAATGA
456 T--AGCCTAATCATGAAATGA
58138 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* *
58203 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
*
58268 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGGTTAGTATGAGTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* *
58333 AAGAGACAAACTTTGATTTTATCTTTAACGGTGGAAAAAAAAGCTTCTCTTGTGACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
* * *
58398 TCAATGTCATGCATCCTAATGAAGGAAAAGAGTTTTTGGATCCTAATCTTGAAAAGAATTGGGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* * *
58463 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTGATTTTATGGAAAATAAGGTAG
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAA
* *
58528 AGAAAAGATTTCCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTA
391 AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
*
58593 TGGTGCCTAATCATGAAATGA
456 T--AGCCTAATCATGAAATGA
58614 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* *
58679 TGAAGGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
*
58744 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGGTTAGTATGAGTATTCATGTTTGTCTTATTT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
* *
58809 AAGAGACAAACTTTGATTTTGTCATTAACGGTGGAAAAAAAAGCTTCTCTTCCGACACCAAAGCA
196 AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
*
58874 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATAGGGAC
261 TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
* *
58939 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT-AGTTTTAAGAAAAATAAGGCA
326 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA-TTTTATGGAAAATAAGGCA
* * *
59003 AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATATGTTT
390 AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
59068 ATAGTGCCTAATCATGAAATGA
455 ATA--GCCTAATCATGAAATGA
* * *
59090 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAAAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * * * **
59155 T--ATGGGAAAAAAACGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCGTAAAAGAAGAC
66 TGGAT-GGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGAC
* * * *
59218 TATGTTTATGGTGCCTAATC-CTGAAAAGAAT-AGGATTAGTATGAGTTTTCAAGTTTGTATTAT
130 TATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTAT
* * * *
59281 TTAAGAGACAAATTTTTATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGC-ACCACAAAA
194 TTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGA-CACCAAA
* * * * * *
59345 GCATCAATGTCATGTGTGCTAATGAAGGGAATGTGTTTTTGG-TTCTCAATCTTGGAAAGAATGG
258 GCATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCT-AATCTTGAAAAGAATGG
** * * * *
59409 AAACTTTTATGAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAT
322 GGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAG
* * * * *
59474 GCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCTACATCATTTATCCTAATGAAGATAATGTG
387 GCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTG
*
59539 TTTATAGTGCCTAATCACGAAATGA
452 TTTATA--GCCTAATCATGAAATGA
* * * * *
59564 ATGAAGATCCTTACTGGAATCCATGATTGTCTCATTTGAGGCAGGAACTTAGAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* * * * * *
59629 T-GATGGGAAGAAAGT-GTTTCTTGCGAAACCAAAGCATCACTAT-CATGTATCCTCACGAGAAG
66 TGGAT-GGAA-AAAATCGTTTCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAG
* * *
59691 ACTATGTTTATGGTGCCTAATC-CAGAAAAGAAAGGGGATTAGTATGAGTATTCTTGTTTATCTT
128 ACTATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * * * * *
59755 ATTTAAGAGACAAACTTTGATTCTATCAATAACAGTGGAAAGACATGCTTCTCTTGCGATACCAA
192 ATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAA
* *
59820 AGCATCAATGTCATGCATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAATAATGG
257 AGCATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGG
* *
59885 GGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTAAAAACTTTGATTTTTTGGAAAATAAG
322 GGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAG
* * * * *
59950 GCAACGAAAAGAATTCCATGCAAAAGAAAACCATCAATATCACGTATCCTGATGAGGAGATTGTG
387 GCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTG
60015 TTTATAGTGCCTAATCATGAAATGA
452 TTTATA--GCCTAATCATGAAATGA
* *
60040 ATGAAGATCCTTACTAGAATCCATGTTTATCTCATTTAAAGCACGAACTTAAAATTTACAAAAAT
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
* *
60105 TGGA-GGGAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCGTTATGAGAAGACT
66 TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
* * *
60169 ATGTTTATGGTGCCTAATCCCGAAAAGAATTGGGATTAGTATGAGTAATTCAGGTTTGTCTTATT
131 ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGT-ATTCATGTTTGTCTTATT
* *
60234 TAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAATGC
195 TAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGC
* *
60299 ATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATTTTAAAAAGAATGGGGA
260 ATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGA
* * * * * *
60364 CTTTTACGGGAATTAATGTATGTCTCATTTAAAGTACAAACTTTGGTTTTAAGGAAAATACGGCA
325 CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCA
* * * * * *
60429 AAGAAAAGATTTTCATGCGAGAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATATGTTT
390 AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTT
*
60494 ATAGTGCCTAATTATGAAATGA
455 ATA--GCCTAATCATGAAATGA
* * *
60516 ATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGTACGAAC-TAGAGAATTTACAAAA
1 ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTA-A-AATTTACAAAA
* * * * * *
60580 ATT--ATGGGAAAAAAACGTTTCCTGCGAAACCAAATCATCAATATCCTGTATCCGTATAAGAAG
64 ATTGGAT-GGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAG
* * * * * * * *
60643 ACTATGTTTATGGTGCCGAATC-CTGAAAAAAAT-AGCATTAGTATGAATTTTCAAGTTTGTATT
128 ACTATGTTTATGGTGCCTAATCTC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * ** * * *
60706 ATTTAAGAGACAAATTTTGATTTTACCGA-TAACGTTGGAACGAAAAGCCTCTTTTGCGACAGCA
192 ATTTAAGAGACAAACTTTGATTTTATC-ATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCA
* * * * * *
60770 AAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTGGAAAAGAATG
256 AAGCATCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATG
*
60835 GAGACTTTTA
321 GGGACTTTTA
60845 ATCACGAACT
Statistics
Matches: 6374, Mismatches: 533, Indels: 142
0.90 0.08 0.02
Matches are distributed among these distances:
471 43 0.01
472 371 0.06
473 209 0.03
474 1763 0.28
475 1357 0.21
476 2533 0.40
477 98 0.02
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (474 bp):
ATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAATTTACAAAAAT
TGGATGGAAAAAATCGTTTCTTGCGAAACAAAATCATCAATATCCAGTATCCTTATGAGAAGACT
ATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTT
AAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCGACACCAAAGCA
TCAATGTCATGTATCCTAATGAAGGAAATGAGTTTTTGGATCCTAATCTTGAAAAGAATGGGGAC
TTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGGCAA
AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTA
TAGCCTAATCATGAAATGA
Found at i:60547 original size:159 final size:158
Alignment explanation
Indices: 53476--60671 Score: 2370
Period size: 159 Copynumber: 45.5 Consensus size: 158
53466 AGAAAGCGTA
* * * * * *
53476 TCTTGCGAAACCAAAGCGTCAATATCATGTATCCTTATGA-GAAAACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAA-TATGTTTATGGTGCCTAA
* * * *** * *
53540 CCCTGAAAAGAA-AAGGGATTAGTA-TGAGTATTCT-TGTTTGTCTTATTTAAGAG-A-AAACTT
65 TCTTGAAAAGAATGA-GGATCCTTACT-AG-AATCTATGTTTGTCTCATTTAA-AGTACAAACTT
* ** * * * *
53600 TGATTCTATCAATA-ACGGTTGAAAGAAAGGCTTC
126 TGATTTTAAGAAAATACGG--GAAAGAAAAGATTT
** * * * * * * * * * * *
53634 TCTTGCGACCCCAAAGCATTAATGTCTTGTATCCTAATGAAAG-GATTGTGTTTTTGGTTCCCAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGGTGCCTAA
* * * * ** *
53698 TCTTGAAAAGAATGGGGA-CTTTTACGAGAATCAATGCATGTCTCTTTTAAAGTACAAACTTTGA
65 TCTTGAAAAGAATGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGA
* *
53762 TTTTAAGGAAAATAAGGCAAAGAAAAGA-TT
129 TTTTAA-GAAAATACGGGAAAGAAAAGATTT
* * * * * *
53792 TCTATGCAAAAGAAAACCATCAATATCCTTTATCCTATTAAGGAGAATATGTTTAT--AGCCTAA
1 TCT-TGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
** * * * * * * * **
53855 TCACGAAATA-AATGAAGATCCTTACCAGAATCCGA-GTTTGTCTCATTTGAGGCACGAACTGAG
65 TCTTGAAA-AGAATGAGGATCCTTACTAGAAT-CTATGTTTGTCTCATTTAAAGTACAAACTTTG
* *
53918 AATTTACA-AAAATTATGGG-AA-AAAAG-TGTT
128 ATTTTA-AGAAAA-TACGGGAAAGAAAAGAT-TT
* * * ** * * * *
53948 TCTTTCAAAACCAAATAATCAATATCCTATATCCGT-ATAAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCC-TAATAAGGAGAATATGTTTATGGTGCCTAA
* *** * * * * * *
54012 TCCTGAAAAGAATG-GGATTAGTA-TGAGTATTCAAT-TTTGTATTAATTAAGAG-ACAAATTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AG-AATCTATGTTTGTCTCATTTAA-AGTACAAACTTT
* * * ** *
54073 GATTTTACCG-ATA-ACGTTGGAAAAAAAAGCCTC
127 GATTTTA-AGAAAATACG--GGAAAGAAAAGATTT
* * * * * * * *
54106 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTTGGTTCCCAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGGTGCCTAA
* * * * ** * *
54170 TATTGAAAAGAATG-GAGA-CTTTTACGAGAATCAATGCATGCCTCATTTAAAGTA-AAAGCATT
65 TCTTGAAAAGAATGAG-GATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAA-CTTT
* * *
54232 GGTTTTAAGGAAAATAAGGCAAAGAAAAGATTT
127 GATTTTAA-GAAAATACGGGAAAGAAAAGATTT
* ** * * * * *
54265 CCAAGC-AAAGGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAA-CAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* * * * * * * * * * **
54329 TCATGAAATGAACGAAGATCTTTCCTAGAATCCATGTTTGTCTTATTTGAAGAATGAA-TTT-AT
65 TCTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGAT
* * * * ****
54392 ACATTACA-AAACTAGGTGGGAAG-AAAGCGGA
130 --TTTA-AGAAAATACG-GGAAAGAAAAGATTT
* * * * * * *
54423 TCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACA-ATGTTTATGCTGCCTAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGA-ATATGTTTATGGTGCCTAA
* * * *** * * * *
54487 TCCTGAAAAGAAAGGGGATTAGTA-TGAGTATTCT-TGTTTATCTTATTTAAGAG-ATAAACTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AG-AATCTATGTTTGTCTCATTTAA-AGTACAAACTTT
* ** * * * *
54549 GATTCTATCAACA-ACAGTGGAAAGACAAGCTTC
127 GATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * *
54582 TCTTGCGACAC-AAAGCATCAATGTCATGTATCCCAATGAAGGA-AATAAGTTTTTGGAT-CCTA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGG-TGCCTA
* * * * *
54644 ATCTTGAAAAGAATGGGGAGT--TTAACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACATT
64 ATCTTGAAAAGAATGAGGA-TCCTT-ACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTT
* * *
54707 GATTTTATGGAAAATTA-GGCAAAGAATAGATTT
127 GATTTTA-AGAAAA-TACGGGAAAGAAAAGATTT
* * ** * * * * * * * * *
54740 CCGTGTAAAAGAAAACCATCAACATCAAGTATCTTGATGAGGAGAATTTGTTTATAGTGCCTAGT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
** * * * * * * ** *
54805 C-ACAAAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAA
66 CTTGAAAA-GAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGAT
* * *
54869 TTTACA-AAAAT--TGGAAGGAAAAAATCGTT
130 TTTA-AGAAAATACGGGAAAGAAAAGAT--TT
* * * * * * * * *
54898 TCTTGCGAAACCAAATCATCAATATCCA-ATATCCTTATGAGAAGACTATGTTTATGGTACTTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
** * *** *
54962 TC-CCATAAAGAATGGGGATTAGTA-TGAGTAT-TCATGTTTGTCAT-ATTTAAAAG-ACAAACT
65 TCTTGA-AAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTC-TCATTT-AAAGTACAAACT
** ** * *
55022 TTGATTTTATCATTA-ACGGTGGAAA-AAAAGCTTC
125 TTGATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * *
55056 TCTTGCGACACCAAAGCATCATTGTCATGTATCCTAATGAAGGA-AATGA-GTTTTTGGAT-CCT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAAT-ATGTTTATGG-TGCCT
* * * ** * ** * *
55118 AATCTTGAGAAGAATGGGGA-CTTTTACGGGAATCAATGCATGTCTCATTTAAAATATAAACTTT
63 AATCTTGAAAAGAATGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTT
*
55182 GGTTTTAAGGAAAATA-GGGCAAAGAAAAGATTT
127 GATTTTAA-GAAAATACGGG-AAAGAAAAGATTT
* * * * * * *
55215 CCATGCAAAAGAAAACCATCAATATCAAT-TATCCTAATGAGGAAAATATGTTTATAGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATATC-ATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
** * * * * * * * * *
55279 TCACGAAATA-AATGAAGATCCTTACTAGAATCCATATTTGTCTCATTTGAGGCACGAACATAGA
65 TCTTGAAA-AGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGA
* * ** * **
55343 ATTTACA-ACAATTA-TTGCAA-AAAAGCGTT
129 TTTTA-AGA-AAATACGGGAAAGAAAAGATTT
* * * * * *
55372 TCTTGCGAAACCAAATCATCAACATCCTGTATCCGT-ATAAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCC-TAATAAGGAGAATATGTTTATGGTGCCTAA
* * *** * * * * * *
55436 TCCTCAAAAGAATG-GGATTAGTA-TGAGTAT-TCAAGTTTGTATTATTTAAGAG-ATAAATTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
* ** * *
55497 GATTAT-A-CCAATGACGTTGGAAAGAAAAGCCTCT
127 GATTTTAAGAAAAT-ACG--GGAAAGAAAAG-ATTT
* * * * * * * *
55531 T-TTGC-AACACCAAAGCATCAGTGTCATGTATCCTAATGAAGG-GAATGTGTTTTTGGTTCCCA
1 TCTTGCGAA-ACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGGTGCCTA
* ** * ** *
55593 ATCTTGAAAAGAATG-GAGA-CTTTTACGGGAATCAATGCATGTCTCATTTAGAGTACAAA-TTT
64 ATCTTGAAAAGAATGAG-GATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTT
* *
55655 CGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
127 -GATTTTAA-GAAAATACGGGAAAGAAAAGATTT
* * * * * ** * * *
55689 CCATACAAAAGAAAACCATCAATATGTTTTATCCTAATGAGGAGAATATGTTTAT--AGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
** * * * * * * ** *
55752 CACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* ** *
55817 TTACA-AAAAT--TGGATGGAAAAAATCGTT
131 TTA-AGAAAATACGGGAAAGAAAAGAT--TT
* * * * *
55845 TCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* * *** * *
55909 TCTCGAAAAGAATGGGGATTAGTA-TGAGTAT-TCATGTTTGTCTTATTTAAGAG-ACAAACTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
** ** * * *
55971 GATTTTATCATTA-ACGGTGGAAAAAAAAGCTTC
127 GATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * * * * *
56004 TCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGA-GTTTTTGGAT-CCTG
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGG-TGCCTA
* * * * ** *
56067 ATCTTGAAAAGAATGGGGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTG
64 ATCTTGAAAAGAATGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * *
56131 ATTTTATGGAAAATAAGGCAGAGAAAAGATTT
128 ATTTTA-AGAAAATACGGGAAAGAAAAGATTT
* * * * * * *
56163 CCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * * * ** ** *
56228 CATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTGATTTGAAGCATGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* *
56293 TTACA-AAAATTGAAGGGAAA-AAATCG--TT
131 TTA-AGAAAA-T-ACGGGAAAGAAA-AGATTT
* * * * * *
56321 TCTTGCGAAACAAAATCATTAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* *** * * *
56385 TCTCGAAAAGAATG-GGATTAGTA-TGAGTAT-TCATGTTTGTCTTATTTAAGAG-ACAAAGTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
** ** * *
56446 GATTTTATCATTA-ACGGTGGAAA-AAAAGCTTC
127 GATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * * * *
56478 TCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGA-GTTTTTGGAT-CCTA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGG-TGCCTA
* * ** *
56541 ATCTTGAAAAGAATTG-GGA-CTTTTA-TGAGAATCAATGCATGTCTCATTTAAAGTACAAACGT
64 ATCTTGAAAAGAA-TGAGGATC-CTTACT-AGAATCTATGTTTGTCTCATTTAAAGTACAAACTT
* * * *
56603 TGATTTTATGGAAAATAAGGCAGAGAAAAGATTT
126 TGATTTTA-AGAAAATACGGGAAAGAAAAGATTT
* * * * * * *
56637 CCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * * * ** *
56702 CATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* ** *
56767 TTACA-AAAAT--TGGACGGAAAAAATCGTT
131 TTA-AGAAAATACGGGAAAGAAAAGAT--TT
* * * * *
56795 TCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* * *** * *
56859 TCTCGAAAAGAATGGGGATTAGTA-TGAGTAT-TCATGTTTGTCTTATTTAAGAG-ACAAACTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
** ** * * *
56921 GATTTTATCATTA-ACGGTGGAAAAAAAAGCTTC
127 GATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * * * * *
56954 TCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGA-GTTTTTGGAT-CCTG
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGG-TGCCTA
* * * * ** *
57017 ATCTTGAAAAGAATGGGGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTTG
64 ATCTTGAAAAGAATGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * *
57081 ATTTTATGGAAAATAAGGCAGAGAAAAGATTT
128 ATTTTA-AGAAAATACGGGAAAGAAAAGATTT
* * * * * * *
57113 CCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * * * ** ** *
57178 CATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTGATTTGAAGCATGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* *
57243 TTACA-AAAATTGAAGGGAAA-AAATCG--TT
131 TTA-AGAAAA-T-ACGGGAAAGAAA-AGATTT
* * * * * *
57271 TCTTGCGAAACAAAATCATTAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* *** * * *
57335 TCTCGAAAAGAATG-GGATTAGTA-TGAGTAT-TCATGTTTGTCTTATTTAAGAG-ACAAAGTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
** ** * *
57396 GATTTTATCATTA-ACGGTGGAAA-AAAAGCTTC
127 GATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * * * *
57428 TCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGA-GTTTTTGGAT-CCTA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGG-TGCCTA
* * * * ** * *
57491 ATCTTGGAAAGAATTG-GGA-CTTTTACGAGAATCAATGCATCTCTCATTTAAAGTACAAACGTT
64 ATCTTGAAAAGAA-TGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTT
* * *
57554 GATTTTATGGAAAATAAGGCAAAGAAAAGATTT
127 GATTTTA-AGAAAATACGGGAAAGAAAAGATTT
* ** * * * *
57587 CCAAGCAAAAGAAGACCATCAATATCATGTATCCTAATAAGGAGAATGTGTTTATGGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
** * ** * * * * ** *
57652 CACGAAATGAATGAAAATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* *
57717 TTACA-AAAATTGAAGGGAAA-AAATCG--TT
131 TTA-AGAAAA-T-ACGGGAAAGAAA-AGATTT
* * * * *
57745 TCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* * * *** * *
57809 TCTCGAAAAGAATGGGGGTTAGTA-TGAGTAT-TCATGTTTGTCTTATTTAAGAG-ACAAACTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
***** * * *
57871 GATTTTATCTTTA-ACGGTGGAAAAAAAAGCTTC
127 GATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * * * *
57904 TCTTGCGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGA-GTTTTTGGAT-CCTA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGG-TGCCTA
* * * ** *
57967 ATCTTGAAAAGAATTG-GGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACATT
64 ATCTTGAAAAGAA-TGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTT
* * * *
58030 GATTTTATGGAAAATAAGGCAGAGAAAAGATTT
127 GATTTTA-AGAAAATACGGGAAAGAAAAGATTT
* * * * * * *
58063 CCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * * * ** *
58128 CATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* *
58193 TTACA-AAAATTGAAGGGAAA-AAATCG--TT
131 TTA-AGAAAA-T-ACGGGAAAGAAA-AGATTT
* * * * *
58221 TCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* * * *** * *
58285 TCTCGAAAAGAATGGGGGTTAGTA-TGAGTAT-TCATGTTTGTCTTATTTAAGAG-ACAAACTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
***** * * *
58347 GATTTTATCTTTA-ACGGTGGAAAAAAAAGCTTC
127 GATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * * * * *
58380 TCTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGAAAAGA-GTTTTTGGAT-CCTA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGG-TGCCTA
* * * ** *
58443 ATCTTGAAAAGAATTG-GGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACGTT
64 ATCTTGAAAAGAA-TGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTT
* * * *
58506 GATTTTATGGAAAATAAGGTAGAGAAAAGATTT
127 GATTTTA-AGAAAATACGGGAAAGAAAAGATTT
* * * * * * *
58539 CCATGCAAAAGAAGACCATCAATATCATGTATCCTAATTAGGAGAATGTGTTTATGGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * * * ** *
58604 CATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* *
58669 TTACA-AAAATTGAAGGGAAA-AAATCG--TT
131 TTA-AGAAAA-T-ACGGGAAAGAAA-AGATTT
* * * * *
58697 TCTTGCGAAACAAAATCATCAATATCCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
* * * *** * *
58761 TCTCGAAAAGAATGGGGGTTAGTA-TGAGTAT-TCATGTTTGTCTTATTTAAGAG-ACAAACTTT
65 TCTTGAAAAGAATGAGGATCCTTACT-AGAATCT-ATGTTTGTCTCATTTAA-AGTACAAACTTT
** * * * *
58823 GATTTT--GTCATTAACGGTGGAAAAAAAAGCTTC
127 GATTTTAAGAAAAT-AC-G-GGAAAGAAAAGATTT
* * * * * *
58856 TCTTCCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGA-AATGA-GTTTTTGGAT-CCT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAAT-ATGTTTATGG-TGCCT
* * * **
58918 AATCTTGAAAAGAAT-AGGGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
63 AATCTTGAAAAGAATGA-GGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTT
* *
58981 T-AGTTTTAAGAAAAATAAGGCAAAGAAAAGATTT
126 TGA-TTTTAAG-AAAATACGGGAAAGAAAAGATTT
* * * * * * * *
59015 CCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAAAATATGTTTATAGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * * * * * *
59080 CATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* *
59145 TTAAAAAAATTATGGGAAA-AAAACG--TT
131 TTAAGAAAA-TACGGGAAAGAAAA-GATTT
* * * * *
59172 TCTTGCGAAACCAAATCATCAATATCCTGTATCCGTAA-AAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCC-TAATAAGGAGAATATGTTTATGGTGCCTAA
* * * * * * * *
59236 TCCTGAAAAGAAT-AGGA---TTAGTATGAGTTTTCAAGTTTGTATTATTTAAGAG-ACAAATTT
65 TCTTGAAAAGAATGAGGATCCTTACTA-GA-ATCT-ATGTTTGTCTCATTTAA-AGTACAAACTT
* ** ** * *
59296 TTATTTTATCATTA-ACGGTGGAAAGAAAAGCTTC
126 TGATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * * * *
59330 TCTTGC-ACCACAAAAGCATCAATGTCATGTGTGCTAATGAAGG-GAATGTGTTTTTGGT-TCTC
1 TCTTGCGA-AACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGGTGCCT-
* * * * * ** *
59392 AATCTTGGAAAGAATG-GAAACTTTTA-TGAGAATCAATGCATGCCTCATTTAAAGTACAAACTT
63 AATCTTGAAAAGAATGAGGATC-CTTACT-AGAATCTATGTTTGTCTCATTTAAAGTACAAACTT
** *
59455 TGATTTTAAGGAAAATAATGCAAAGAAAAGATTT
126 TGATTTTAA-GAAAATACGGGAAAGAAAAGATTT
* * * * * * * * * *
59489 CCATGCAAAAGAAAACCATCTACATCATTTATCCTAATGAA-GATAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAATATGTTTATGGTGCCTAA
** * * * * * * * * ** * *
59553 TCACGAAATGAATGAAGATCCTTACTGGAATCCATGATTGTCTCATTTGAGGCAGGAACTTAGAA
65 TCTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGAT
*
59618 TTTACA-AAAATTGATGGG-AAG-AAAG-TGTT
130 TTTA-AGAAAA-T-ACGGGAAAGAAAAGAT-TT
* * * * ** * *
59647 TCTTGCGAAACCAAAGCATCACTATCATGTATCCTCACGAGAAGACTATGTTTATGGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
** * * *** * * *
59712 CCAGAAAAGAAAGGGGATTAGTA-TGAGTATTCT-TGTTTATCTTATTTAAGAG-ACAAACTTTG
66 CTTGAAAAGAATGAGGATCCTTACT-AG-AATCTATGTTTGTCTCATTTAA-AGTACAAACTTTG
* ** * * * * *
59774 ATTCTATCAATA-ACAGTGGAAAGACATGCTTC
128 ATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * * * * *
59806 TCTTGCGATACCAAAGCATCAATGTCATGCATCCTAATGAAGGA-AATGA-GTTTTTGGAT-CCT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAAT-ATGTTTATGG-TGCCT
* * * * * ** *
59868 AATCTTGAAAATAATGGGGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTAAAAACTTT
63 AATCTTGAAAAGAATGAGGATC-CTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTT
** * * * *
59932 GATTTTTTGGAAAATAAGGCAACGAAAAGAATT
127 GA-TTTTAAGAAAATACGGGAAAGAAAAGATTT
* * * * * * * * * *
59965 CCATGCAAAAGAAAACCATCAATATCACGTATCCTGATGAGGAGATTGTGTTTATAGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * * * ** *
60030 CATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTATCTCATTTAAAGCACGAACTTAAAAT
66 CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
* **
60095 TTACA-AAAAT--TGGAGGGAAAA-ATCGTT
131 TTA-AGAAAATACGGGAAAGAAAAGAT--TT
* * * * * *
60122 TCTTGCGAAACAAAATCATCAATATCCA-GTATCGTTATGAGAAGACTATGTTTATGGTGCCTAA
1 TCTTGCGAAACAAAACCATCAATAT-CATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAA
** *** * *
60186 TCCCGAAAAGAATTG-GGATTAGTA-TGAGTAAT-TCAGGTTTGTCTTATTTAAGAG-ACAAACT
65 TCTTGAAAAGAA-TGAGGATCCTTACT-AG-AATCT-ATGTTTGTCTCATTTAA-AGTACAAACT
** * * * *
60247 TTGATTTTATCAATA-ACGGTGGAAAAAAAAGCTTC
125 TTGATTTTAAGAAAATAC-G-GGAAAGAAAAGATTT
* * ** * *
60282 TCTTGCGACACCAATGCATCAATGTCATGTATCCTAATGAAGGA-AATGA-GTTTTTGGAT-CCT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAAT-AAGGAGAAT-ATGTTTATGG-TGCCT
* * * * ** *
60344 AATTTTAAAAAGAATGGGGA-CTTTTACGGGAAT-TAATGTATGTCTCATTTAAAGTACAAACTT
63 AATCTTGAAAAGAATGAGGATC-CTTACTAGAATCT-ATGTTTGTCTCATTTAAAGTACAAACTT
* *
60407 TGGTTTTAAGGAAAATACGGCAAAGAAAAGATTT
126 TGATTTTAA-GAAAATACGGGAAAGAAAAGATTT
* * * * *
60441 TCATGCGAGAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCTAAT
1 TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
* * * * * **
60506 -TATGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGTACGAACTAGAGA
66 CT-TGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACT-TTGA
* *
60570 ATTTACA-AAAATTATGGGAAA-AAAACG--TT
129 TTTTA-AGAAAA-TACGGGAAAGAAAA-GATTT
* * * * * * *
60599 TCCTGCGAAACCAAATCATCAATATCCTGTATCCGT-ATAAGAAGACTATGTTTATGGTGCCGAA
1 TCTTGCGAAACAAAACCATCAATATCATGTATCC-TAATAAGGAGAATATGTTTATGGTGCCTAA
*
60663 TCCTGAAAA
65 TCTTGAAAA
60672 AAATAGCATT
Statistics
Matches: 5007, Mismatches: 1603, Indels: 856
0.67 0.21 0.11
Matches are distributed among these distances:
153 7 0.00
154 18 0.00
155 59 0.01
156 216 0.04
157 566 0.11
158 1720 0.34
159 2135 0.43
160 222 0.04
161 54 0.01
162 10 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (158 bp):
TCTTGCGAAACAAAACCATCAATATCATGTATCCTAATAAGGAGAATATGTTTATGGTGCCTAAT
CTTGAAAAGAATGAGGATCCTTACTAGAATCTATGTTTGTCTCATTTAAAGTACAAACTTTGATT
TTAAGAAAATACGGGAAAGAAAAGATTT
Found at i:61081 original size:290 final size:290
Alignment explanation
Indices: 60558--61131 Score: 787
Period size: 290 Copynumber: 2.0 Consensus size: 290
60548 CATTTGAGGT
*
60558 ACGAACTAGAGAATTTACAAAAATTATGGGAAAAAAACGTTTCCTGCGAAACCAAATCATCAATA
1 ACGAACTAGAGAATTTACAAAAATGATGGGAAAAAAACGTTTCCTGCGAAACCAAATCATCAATA
* *
60623 TCCTGTATCCGTATAAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAAAATAGCATTAGTATG
66 TCCTGTATCCGTACAAGAAAACTATGTTTATGGTGCCGAATCCTGAAAAAAATAGCATTAGTATG
* * * * * *
60688 AATTTTCAAGTTTGTATTATTTAAGAGACAAATTTTGATTTTACCGATAACGTTGGAACGAAAAG
131 AATATTCAAGTTTATATTATTTAAGAGACAAACTTTGATTCTACCAATAACGTTGGAAAGAAAAG
* * *
60753 CCTCTTTTGCGACAGCAAAGCATCAATGTCAAGTATCCTAATGAAGGGAATGTGTTTTTGGTTCC
196 CCTCTCTTGCGACAGCAAAGCATCAATGTCAAGTATCCTAATGAAGAGAAAGTGTTTTTGGTTCC
60818 AAATC-TGGAAAAGAATGGAGACTTTTAATC
261 AAATCTTGGAAAA-AATGGAGACTTTTAATC
* * * * * *
60848 ACGAACT-TAGAATTTACAAAAAATGGTGGGAAAAAATCGTTTCTTGCTAGACCAAATCATCAAT
1 ACGAACTAGAGAATTTAC-AAAAATGATGGGAAAAAAACGTTTCCTGCGAAACCAAATCATCAAT
* * * * * *
60912 ATCCTGTATCCTTACGAGAAAACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGTATTAGTA
65 ATCCTGTATCCGTACAAGAAAACTATGTTTATGGTGCCGAATCCTGAAAAAAAT-AGCATTAGTA
* * * * *
60977 TGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAG-TGGAAAGAC
129 TGAATATTCAAGTTTATATTATTTAAGAGACAAACTTTGATTCTACCAATAAC-GTTGGAAAGAA
* **
61041 AAGCTTCTCTTGCGACA-CAAAGCATCAATGTCCTGTATCCTAATGAAGAGAAAGTGTTTTTGGT
193 AAGCCTCTCTTGCGACAGCAAAGCATCAATGTCAAGTATCCTAATGAAGAGAAAGTGTTTTTGGT
*
61105 TCCCAATCTTGGAAAAAATGGAGACTT
258 TCCAAATCTTGGAAAAAATGGAGACTT
61132 ATATGAGAAT
Statistics
Matches: 247, Mismatches: 33, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
289 9 0.04
290 156 0.63
291 81 0.33
292 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.30
Consensus pattern (290 bp):
ACGAACTAGAGAATTTACAAAAATGATGGGAAAAAAACGTTTCCTGCGAAACCAAATCATCAATA
TCCTGTATCCGTACAAGAAAACTATGTTTATGGTGCCGAATCCTGAAAAAAATAGCATTAGTATG
AATATTCAAGTTTATATTATTTAAGAGACAAACTTTGATTCTACCAATAACGTTGGAAAGAAAAG
CCTCTCTTGCGACAGCAAAGCATCAATGTCAAGTATCCTAATGAAGAGAAAGTGTTTTTGGTTCC
AAATCTTGGAAAAAATGGAGACTTTTAATC
Found at i:61767 original size:477 final size:474
Alignment explanation
Indices: 60848--62271 Score: 1831
Period size: 477 Copynumber: 3.0 Consensus size: 474
60838 ACTTTTAATC
* * *** * * * **
60848 ACGAACTTAGAATTTACAAAAAATGGTGGGAAAAAATCGTTTCTTGCTAGACCAAATCATCAATA
1 ACGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAACGTTTCCCACGAAACGAAAGAATCAATA
* *
60913 TCCTGTATCCTTACGAGAAAACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGTATTAGTA
66 TCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAAGAATGGG-ATTAGTA
* *
60977 TGAGTATTCATGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAATAACAGTGGAAAG-AC
130 TGAGTATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAC
* *
61041 AAGCTTCTCTTGCGACA-CAAAGCATCAATGTCCTGTATCCTAATGAAGAGAAAGTGTTTTTGGT
195 -AGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT-GT
* * *
61105 TCCCAATCTTGGAAA-AAATGGAGACTTATATGAGAATCAATGCTTGTTTCATTTAAAGTACAAA
258 TCCCAATCTT-GAAAGAAA-GGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAA
*** * * * *
61169 CTTTGATTTTAAGGAAAGGGAGGCAAATAAAAGATTTCCAAGTAAAAGAAAACCGTTAATATCAT
321 CTTTGATTTTAAGGAAAATAAGGCAAATAAAAGATTTCCATGCAAAAGAAAACCATCAATATCAT
* * *
61234 TTATCCTAATGGGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAATAAAGATCCTTACTAGA
386 TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCCTTACTAGA
*
61299 ATCCATATTTGTCTCATTTGAGGA
451 ATCCATGTTTGTCTCATTTGAGGA
* * * * * * * *
61323 ATGAACTTATACTTTACAGAAATTGGTGGGAAGAGAGCGTTTCCCACGAAACGAAGGAATCAATA
1 ACGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAACGTTTCCCACGAAACGAAAGAATCAATA
* * *
61388 TCATGTATCCTTACGAGAAGACTATGTTTCTAGTGCCT-ATTCTAGAAAAGAATGTGGATTAGTA
66 TCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAAGAATG-GGATTAGTA
* * * * *
61452 TGACTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAATAATGGTGGAAAGAAC
130 TGAGTATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAC
* * *
61517 AGCTTCTCTTGCGACACCAAAGCATCAACGTCATGCATCCTATTGAAGAGAATGTGTTTTTTAGT
195 AGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG-TTTTT-GT
* * * *
61582 TCCCACTCTTGTAAAGAAAGGAGACTTTTACGAGAATGAATGCATGTCTCATTTAAAGTGCAAAC
258 TCCCAATCTTG-AAAGAAAGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAAC
* *
61647 TTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATT
322 TTTGATTTTAAGGAAAATAAGGCAAATAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATT
*
61712 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAA
387 TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCCTTACTAGAA
*
61777 TCCATGTTTGTCTCATTTGAGGC
452 TCCATGTTTGTCTCATTTGAGGA
*** * ***
61800 ACGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAACGTTTCTTGCGAAACTAAATCGTCAATA
1 ACGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAACGTTTCCCACGAAACGAAAGAATCAATA
* * * *
61865 TCTTGTATCCATATGAGAAGACTATGTTTAGGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTA
66 TCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAAGAAT-GGGATTAGTA
* * * *
61929 TGAGTATTCATATGTTTCTCTTATTTAA-AGGACAAATTTTGATTTTATCATTAACGGTGGAAAG
130 TGAGTATTCA-A-GTTTATCTTATTTAAGA-GACAAACTTTGATTCTATCAATAACGGTGGAAAG
* * *
61993 ATA-AGCTTCTCTTGCAACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
192 A-ACAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTT
* * * * * *
62057 GCTTCCCAATCTTAGAAGGAATGGAAACTTTTATGAGAATTAATGCATGTCTCA-TTAATGTTCA
256 G-TTCCCAATCTT-GAAAGAAAGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACA
* * * *
62121 AACTTTGATGTTAAGGAAAATAAGGCAAATAAAAGATTTCCATGCAAAAAAAAATCATCAACATC
319 AACTTTGATTTTAAGGAAAATAAGGCAAATAAAAGATTTCCATGCAAAAGAAAACCATCAATATC
* * * *
62186 ATTTGTCCTACTGAAGAAAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCCTTACTA
384 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCCTTACTA
*
62251 GAATCCATGCTTGTCTCATTT
449 GAATCCATGTTTGTCTCATTT
62272 TAGGCACAAA
Statistics
Matches: 821, Mismatches: 113, Indels: 28
0.85 0.12 0.03
Matches are distributed among these distances:
474 4 0.00
475 170 0.21
476 39 0.05
477 453 0.55
478 60 0.07
479 94 0.11
480 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
ACGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAACGTTTCCCACGAAACGAAAGAATCAATA
TCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCCTAGAAAAGAATGGGATTAGTAT
GAGTATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAACA
GCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGTTCC
CAATCTTGAAAGAAAGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
ATTTTAAGGAAAATAAGGCAAATAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATC
CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATAAAGATCCTTACTAGAATCCA
TGTTTGTCTCATTTGAGGA
Found at i:67313 original size:42 final size:42
Alignment explanation
Indices: 67258--67376 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
67248 TTTTTCTCTC
* * *
67258 CTCCTCCTGTCATCCCTCCTCTCTCTATTATTTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
67300 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
67342 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
67377 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:67317 original size:12 final size:11
Alignment explanation
Indices: 67291--67366 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
67281 TCTATTATTT
*
67291 CTCCTGTCTCTC
1 CTCCTATCTC-C
67303 CTCCTATCATCC
1 CTCCTATC-TCC
67315 CTCCTATCT--
1 CTCCTATCTCC
*
67324 CTACTATCT--
1 CTCCTATCTCC
*
67333 CTCCTGTCTCTC
1 CTCCTATCTC-C
67345 CTCCTATCATCC
1 CTCCTATC-TCC
*
67357 CTCCTCTCTC
1 CTCCTATCTC
67367 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:69666 original size:158 final size:156
Alignment explanation
Indices: 69029--70250 Score: 472
Period size: 158 Copynumber: 7.7 Consensus size: 156
69019 AGAAAGTGTT
* *
69029 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGATGACTATGTTTATGGTGCCTAAT
1 TCTTG-GAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * * * * * * *
69094 -CTAGAATAGAATGTG-GACTAGTATGTGTATTCATGTTTTTCTTATTTGAGAGACAAACTTTGA
65 CCT-GAAAAGAATG-GAGATTAGTACGAGTATTCATGTATGTCTCATTTAAGA-AGAAACTTTGA
* * *
69157 TTCTATCAATAATGGTGGAAAGAAAAGATTC
127 TTTTATCAATAACGGTGG-AAGAAAAGCTTC
* * * ** *** * * * *
69188 TCTTGTGACACCAAAGCATCAATGTCATGCATCC-TAACA-AAGGGAATGTGTTCTTGTTCCCAA
1 TCTTG-GAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT-TTATGGTGCCTAA
* * * * * * * * *
69251 T-ATTAGAAAGAATGGAGACTT-TTATGAG-AATCAATGCATGCCTCATTTAAAGTACAAACTTT
64 TCCTGA-AAAGAATGGAGA-TTAGTACGAGTATTC-ATGTATGTCTCATTT-AAGAAGAAACTTT
** * * *
69313 GATTTTAAGGAA-AATGAG-GCAACGAAAAGATT-
125 GATTTT-ATCAATAACG-GTGGAA-GAAAAGCTTC
* * ** * * * * * * *
69345 TCCATGCAAAAGAAAACCATCAATATCAT-TAATCCTAACGAGGAGAATGTGTTTATAGTGCCTA
1 T-CTTG-GAAACCAAAGCATCAATATCATGT-ATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* *** * * * * * * * **
69409 ATCAC--AAAATGAATGAAGATCCCTCCAAGAATCCATGTTTGTCTCATTTGAGCAATGAACCCA
63 ATC-CTGAAAA-GAATGGAGATTAGTACGAGTATTCATGTATGTCTCATTTAAG-AA-GAAACTT
* *
69472 T-ACTTTA-CACA-AACTGGTAGGAAG-AAAG-TGTA
124 TGATTTTATCA-ATAAC-GGT-GGAAGAAAAGCT-TC
* * * *
69504 TCTTGTGAATCCAAAGCATCAATATCATGCATCCTTGTGAGAAGACTATGTTTAGGGTGCCTAAT
1 TCTTG-GAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
69569 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTAAGTCTTATTTAAG-AGACAACTTTGATT
65 CCTGAAAAGAATGGAGATTAGTACGAGTATTCATGTATGTCTCATTTAAGAAGA-AACTTTGATT
69633 TTATCAATAACGGTGGAAAGAAAAGCTTC
129 TTATCAATAACGGTGG-AAGAAAAGCTTC
* * * * *
69662 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AAGGA--ATGTATATTTGGT-TCT
1 TCTTG-GAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GACTATGT-T-TATGGTGCCT
* * * * *
69723 CAATCTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAAAGTAGAAACT
62 -AATCCTGAAAAGAATGGAGA-TTAGTACGAGTATTC-ATGTATGTCTCATTT-AAGAAGAAACT
** * *
69786 TTGATTTTAAGGAAAATAA-GG-CGAAGAAAAGATT-
123 TTGATTTT-A--TCAATAACGGTGGAAGAAAAGCTTC
* ** * * * * *
69820 TCCATGGAAAAGAAAACCATCAATATCATTTATCC-TAT-AGAACAGAATGTGTTTATAGTGCCT
1 T-CTTGG-AAACCAAAGCATCAATATCATGTATCCTTATGAG-A-AGACTATGTTTATGGTGCCT
* * *** * * * * * * **
69883 AATCAC-GAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTCTCATTTGAGCAATGAACCCA
62 AATC-CTGAAAAGAATGGAGATTAGTACGAGTATTCATGTATGTCTCATTTAAG-AA-GAAACTT
* * *
69947 T-ACTTTA-CACA-AACAGGTAGGAAG-AAAGCATA
124 TGATTTTATCA-ATAAC-GGT-GGAAGAAAAGCTTC
* * *
69979 TCTTGCGAATCCAAAGCATCAATATCATGCATCCTTGTGAGAAGACTATGTTTATGGTGCCTAAT
1 TCTTG-GAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT
* * * *
70044 CCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAG-AGACAACTTTGATT
65 CCTGAAAAGAATGGAGATTAGTACGAGTATTCATGTATGTCTCATTTAAGAAGA-AACTTTGATT
*
70108 TTATCAATAACAGTGGAAAGAAAAGCTTC
129 TTATCAATAACGGTGG-AAGAAAAGCTTC
* * * * * * *
70137 TCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGT-TCTCA
1 TCTTGGAA-ACCAAAGCATCAATATCATGTATCCTTATGAGAA-GACTATGTTTATGGTGCCT-A
* * * *
70200 ATCTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA
63 ATCCTGAAAAGAATGGAGA-TTAGTACGAGTATTC-ATGTATGTCTCATTTAA
70251 AGTACAAGCT
Statistics
Matches: 770, Mismatches: 212, Indels: 163
0.67 0.19 0.14
Matches are distributed among these distances:
155 7 0.01
156 17 0.02
157 61 0.08
158 449 0.58
159 194 0.25
160 32 0.04
161 5 0.01
162 5 0.01
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (156 bp):
TCTTGGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
CTGAAAAGAATGGAGATTAGTACGAGTATTCATGTATGTCTCATTTAAGAAGAAACTTTGATTTT
ATCAATAACGGTGGAAGAAAAGCTTC
Found at i:69906 original size:475 final size:474
Alignment explanation
Indices: 68991--73042 Score: 5278
Period size: 475 Copynumber: 8.6 Consensus size: 474
68981 TTTCATCACA
* * *
68991 AACTTAGAATTTACA-AGAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATC
1 AACTTATACTTTACACA-AATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATC
* * * * *
69055 ATGTATCCTTATTAGATGACTATGTTTATGGTGCCTAAT-CTAGAATAGAATGTGGACTAGTATG
65 ATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATG
* * * *
69119 TGTATTCATGTTTTTCTTATTTGAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAAG
129 AGTATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGAAAAG
* * * *
69184 ATTCTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAA-CAAAGGGAATGTGTTCTT-GTTC
193 CTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTT-TTGGTTC
* * *
69247 CCAATATT-AGAAAGAATGGAGACTTTTATGAGAATCAATGCATGCCTCATTTAAAGTACAAACT
256 CCAATCTTGA-AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACT
* * *
69311 TTGATTTTAAGGAAAATGAGGCAACGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTA
320 TTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTT
* * * *
69376 ATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCCTCCAAGAAT
385 ATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAAT
69441 CCATGTTTGTCTCATTTGAGCAATG
450 CCATGTTTGTCTCATTTGAGCAATG
** * * * *
69466 AACCCATACTTTACACAAACTGGTAGGAAGAAAGTGTATCTTGTGAATCCAAAGCATCAATATCA
1 AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCA
* * *
69531 TGCATCCTTGTGAGAAGACTATGTTTAGGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
** *
69596 TATTCATGTAAGTCTTATTTAAGAGACAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTT
131 TATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTT
* *
69661 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTATATTTGGTTCTCAA
196 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGT-TTTGGTTCCCAA
*
69726 TCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTAGAAACTTTGAT
260 TCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* *
69791 TTTAAGGAAAATAAGGCGAAGAAAAGATTTCCATGGAAAAGAAAACCATCAATATCATTTATCCT
325 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCT
*
69856 -ATAGAACAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCCAT
390 AAT-GAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCCAT
69920 GTTTGTCTCATTTGAGCAATG
454 GTTTGTCTCATTTGAGCAATG
** ** * ** *
69941 AACCCATACTTTACACAAACAGGTAGGAAGAAAGCATATCTTGCGAATCCAAAGCATCAATATCA
1 AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCA
* *
70006 TGCATCCTTGTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* *
70071 TATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTTTATCAATAACAGTGGAAAGAAAAGCTT
131 TATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTT
* *
70136 CTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTCAA
196 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTGGTTCCCAA
*
70201 TCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAGCTTTGAT
260 TCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* *
70266 ATTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGGAAAAGAAAACCATCAATATCATTTATCCT
325 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCT
* * *
70331 AA-AAAGGAGAATTTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTATAAGAATCCAT
390 AATGAA-GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCCAT
70395 GTTTGTCTCATTTGAGCAATG
454 GTTTGTCTCATTTGAGCAATG
* * *
70416 AACTCATACTTTACACAAA-T--T-----G---GT-TA------G-AA-GAAAGCGT--ATATCA
1 AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCA
*
70459 TGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAGAATGGGGATTAGTATG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG--AAAAGAATGGGGATTAGTATG
*
70524 AGTATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTCTATCGATAACGGTGGAAAGAAAAGC
129 AGTATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGC
* * *
70589 TTCTCTTGCGACACCAAAGCATTAATGTCATGCATCCTAATGAAAGG-ATTTGTTTTTGGTTCCC
194 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTGGTTCCC
* *
70653 AATCTTGAAAAGAGTGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
258 AATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
*
70718 AATTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATC
323 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATC
* * **
70783 CT-ATAGAACAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGTAGATCCCTACTGGAATCC
388 CTAAT-GAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCC
*
70847 ATGCTTGTCTCATTTGAGGCACA--
452 ATGTTTGTCTCATTTGA-GCA-ATG
* * * *
70870 AACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCA
1 AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCA
* * * * * *
70935 TGTATCCTTATTAGATGACTATGTTTATGGTGCCTAAT-CTAGTATAGAATGTGGATTAGTATGT
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGA
* * * * * * *
70999 GTTTTCATATTTTTCTTATTTGAGGGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAAAC
130 GTATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGC
* * *
71064 TTCTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAA-CAAAGGGAATGTGTTCTT-GTTCC
194 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTT-TTGGTTCC
* * *
71127 CAATATTTG-AAAGAATGGAGACTTTTACGAGAATCAATGCATGCCTCATTTAAAGTATAAACTT
257 CAAT-CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
* *
71191 TGATTTTAAGGAAAATGAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTAA
321 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTA
* * * *
71256 TCCTAATG-AGAAGAATGTGTTTATAGTGCCTAATGACAAAATGAATGAAGATCCTTACTAGAAT
386 TCCTAATGAAG-AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAAT
* * * *
71320 CTATGTTTCTCTAATTTGAGGAATG
450 CCATGTTTGTCTCATTTGAGCAATG
* * * * *
71345 AACTTATTCTTTATA-AGAATAGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATTAATATC
1 AACTTATACTTTACACA-AATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATC
* * *
71409 ATGTATCCTTATGAGAATACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTAGTATGA
65 ATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * *
71474 GTATTCATGTTTGTCTTATTTAAAAGACAAACCTTGATTCTATCAATAACAGCGGAAAGACAAGC
130 GTATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGC
* *
71539 TTCTCTTGCGACACCAAAGCATTAATGTCATGTATCCTAATG-AAGGAAATAAGT-TTTTGGATC
194 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGG-AAT--GTGTTTTGGTTC
* * * * *
71602 CTAATCTTGAAAAGAAAGGGGACTTTTATGAGAATCAATGCATGTCTCATATAAAGTACAAACTT
256 CCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
* **
71667 TGATTTTAAGGAAGATAAGGCAAAGAAAAGATTTTTATGCAAAAGAAAACCATCAATATCATTTA
321 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTA
* * * *
71732 TCCTAAAG-AGCATAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCTCTACAAGAAT
386 TCCTAATGAAG-AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAAT
*
71796 CCA----TGTCTCATTTGAGTAATG
450 CCATGTTTGTCTCATTTGAGCAATG
* * * * * *
71817 AACTGATACCTTACACAAATTGGTTGGAAGAAAGCGTATCTTGTGAATCCAAAGCATCAATATCA
1 AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCA
* *
71882 TGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGCATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
71947 TATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTT
131 TATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTT
* *
72012 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTATTTCGTTCCTAA
196 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGT-TTTGGTTCCCAA
*
72077 ---T---AAGAATGGAGACTTTTACGAGAATCAATGCCTGTCTCATTTAAAGTACAAACTTTGAT
260 TCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* * *
72136 TTTATGGAAAATAAGGCAAGGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCT
325 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCT
* * * * * * **
72201 AATGAGGAGAATGTGTTTGTTGTTCCTAATCATGAAATGAATGAAGATCCGTACTGGAATCCATG
390 AATGAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCCATG
*
72266 CTTGTCTCATTTGAGGCACA--
455 TTTGTCTCATTTGA-GCA-ATG
* * * * * *
72286 AACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGTGAAACCAAAGCATCAATATCT
1 AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCA
* * * * * * *
72351 TGTATCCTTATTAGATGACTATGTTTATGGTGCCTAAT-CTAGAATATAATGTGGATTAGTTTGT
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGA
* * *
72415 GTATTCATGTTTTTCTTATTTGAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAAGC
130 GTATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGC
* * *
72480 TTCTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAA-CAAAGGGAATGTGTTCTT-GTTCC
194 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTT-TTGGTTCC
* * * *
72543 CAATATT-AGAATGAATGGAGACTTTTACGAGAATCAATGCTTGCCTCATTTAAAGTACAAACTT
257 CAATCTTGA-AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
* *
72607 TGATTTTAAGGAAAATGAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTAA
321 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTA
* * * *
72672 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCCTTACTAGAATC
386 TCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATC
72737 CATGTTTGTCTCATTTGAGGC-ATG
451 CATGTTTGTCTCATTTGA-GCAATG
* * * * * * * * * *
72761 AACTTAGAATTTGCAAAAATT-ATGGGAAAAAAGCGTTTCTTGCGAAATCATATG-ATCAATATC
1 AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCA-AAGCATCAATATC
* * * ** * *
72824 CTGTATCCATATAAGAAGACTAT-TTTATAATGCCTAATCCTAAAAATAAT-GGGATTAGTATGA
65 ATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
* * * * * * * * * *
72887 GTATTCAAGTTTGTATTATTTAAGAGATAAATTTTGATTTTACCGATAATGTTAGAAAGAAAAGC
130 GTATTCATGTTTGTCTTATTTAAGAGA-CAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGC
* * * * *
72952 CTCTCTTGCGACACCAAAGCAACAATGTCAAGTATCCTAATGAAGGGAATGCGTTTTTGGTTCCC
194 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTG-TTTTGGTTCCC
73017 AATCTTGAAAAGAATGGAGACTTTTA
258 AATCTTGAAAAGAATGGAGACTTTTA
73043 GGCACAAACT
Statistics
Matches: 3172, Mismatches: 319, Indels: 174
0.87 0.09 0.05
Matches are distributed among these distances:
453 48 0.02
454 222 0.07
455 139 0.04
456 2 0.00
457 2 0.00
462 1 0.00
463 2 0.00
464 1 0.00
465 167 0.05
466 2 0.00
467 1 0.00
468 3 0.00
469 158 0.05
470 87 0.03
471 87 0.03
472 269 0.08
473 57 0.02
474 195 0.06
475 1491 0.47
476 236 0.07
477 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
AACTTATACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCA
TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
TATTCATGTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTT
CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTGGTTCCCAAT
CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTA
ATGAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCCATGT
TTGTCTCATTTGAGCAATG
Found at i:69928 original size:159 final size:156
Alignment explanation
Indices: 69292--70407 Score: 402
Period size: 158 Copynumber: 7.0 Consensus size: 156
69282 CAATGCATGC
* * * * * *
69292 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATGAGGCAACGAAAAGATTTCCATGCAAAAG
1 CTCATTTAAAGTAGAAACTTTGATTTTAAGCAAAATAAGGGAA-GAAAAGATTTCCATGGAAAAC
*
69357 AAAACCATCAATATCAT-TAATCCTAACGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATG
65 AAAACCATCAATATCATGT-ATCCTAA-GA-AAGAATGTGTTTATAGTGCCTAATCACGAAAA-G
*
69420 AATGAAGATCCCTCCAAGAATCCATGTTTGT
126 AATGAAGATCCCTACAAGAATCCATGTTTGT
* ** * * * *
69451 CTCATTTGAGCAA-T-GAACCCAT-ACTTTACA-CAAACT-GGTAGGAAG-AAAG-TGTAT-CTT
1 CTCATTT-A--AAGTAGAAACTTTGATTTTA-AGCAAAATAAG--GGAAGAAAAGAT-T-TCCAT
* * * * ** * * **
69508 GTG-AATCCAAAGCATCAATATCATGCATCCTTGTGAGAAGACTATGTTTAGGGTGCCTAATC-C
58 G-GAAAACAAAACCATCAATATCATGTATCC-TAAGA-AAGAATGTGTTTATAGTGCCTAATCAC
** *** ** * * **
69571 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTAAGT
120 -GAAAAGAATGAAGATCCCTACAAGAATCCATGTTTGT
* * * *
69609 CTTATTT-AAG-AGACAACTTTGATTTT-ATC--AATAACGGTGGAAAGAAAAG-CTTCTCTTGC
1 CTCATTTAAAGTAGA-AACTTTGATTTTAAGCAAAATAA--G-GG-AAGAAAAGATTTC-CATG-
* * * * * * * **
69668 G-ACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTATATT-TGGT-TCTCAATCTT
59 GAAAACAAAACCATCAATATCATGTATCCTAA-GAAA-GAATGTGT-TTATAGTGCCT-AATCAC
* ** * * **
69730 GAAAAGAATGGAGA-CTTTTACGAGAATCAATGCATGT
120 GAAAAGAATGAAGATC-CCTACAAGAATCCATGTTTGT
* *
69767 CTCATTTAAAGTAGAAACTTTGATTTTAAGGAAAATAAGGCGAAGAAAAGATTTCCATGGAAAAG
1 CTCATTTAAAGTAGAAACTTTGATTTTAAGCAAAATAAGG-GAAGAAAAGATTTCCATGGAAAAC
* *
69832 AAAACCATCAATATCATTTATCCTATAGAACAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
65 AAAACCATCAATATCATGTATCCTA-AGAA-AGAATGTGTTTATAGTGCCTAATCACGAAAAGAA
69897 TGAAGATCCCTACAAGAATCCATGTTTGT
128 TGAAGATCCCTACAAGAATCCATGTTTGT
* ** * * *
69926 CTCATTTGAGCAA-T-GAACCCAT-ACTTTACA-CAAACAGGT-A-GGAAG-AAAGCATAT-CTT
1 CTCATTT-A--AAGTAGAAACTTTGATTTTA-AGCAAA-A--TAAGGGAAGAAAAG-ATTTCCAT
* * * * ** * * *
69983 GCG-AATCCAAAGCATCAATATCATGCATCCTTGTGAGAAGACTATGTTTATGGTGCCTAATC-C
58 G-GAAAACAAAACCATCAATATCATGTATCC-TAAGA-AAGAATGTGTTTATAGTGCCTAATCAC
** *** ** * *
70046 TGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
120 -GAAAAGAATGAAGATCCCTACAAGAATCCATGTTTGT
* * * * * *
70084 CTTATTT-AAG-AGACAACTTTGATTTT-ATCAATAA-CAGTGGAAAGAAAAG-CTTCTCTTGCA
1 CTCATTTAAAGTAGA-AACTTTGATTTTAAGCAA-AATAAG-GG-AAGAAAAGATTTC-CATGGA
* * * * * * * **
70144 ACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGT-TCTCAATCTTGAA
61 AAACAAAACCATCAATATCATGTATCCTAA-GAAA-GAATGTGTTTATAGTGCCT-AATCACGAA
* ** * * **
70208 AAGAATGGAGA-CTTTTACGAGAATCAATGCATGT
123 AAGAATGAAGATC-CCTACAAGAATCCATGTTTGT
* * * * * *
70242 CTCATTTAAAGTACAAGCTTTGATATTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGGAAAAG
1 CTCATTTAAAGTAGAAACTTTGATTTTAAGCAAAATAAGG-GAAGAAAAGATTTCCATGGAAAAC
* * * *
70307 AAAACCATCAATATCATTTATCCTAAAAAGGAGAATTTGTTTATAGTGCCTAATCACGAAATGAA
65 AAAACCATCAATATCATGTATCCTAAGAA--AGAATGTGTTTATAGTGCCTAATCACGAAAAGAA
*
70372 TGAAGATCCCTATAAGAATCCATGTTTGT
128 TGAAGATCCCTACAAGAATCCATGTTTGT
70401 CTCATTT
1 CTCATTT
70408 GAGCAATGAA
Statistics
Matches: 691, Mismatches: 181, Indels: 170
0.66 0.17 0.16
Matches are distributed among these distances:
154 7 0.01
155 6 0.01
156 17 0.02
157 30 0.04
158 327 0.47
159 245 0.35
160 46 0.07
161 3 0.00
162 10 0.01
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (156 bp):
CTCATTTAAAGTAGAAACTTTGATTTTAAGCAAAATAAGGGAAGAAAAGATTTCCATGGAAAACA
AAACCATCAATATCATGTATCCTAAGAAAGAATGTGTTTATAGTGCCTAATCACGAAAAGAATGA
AGATCCCTACAAGAATCCATGTTTGT
Found at i:72047 original size:158 final size:159
Alignment explanation
Indices: 70453--72994 Score: 836
Period size: 158 Copynumber: 16.1 Consensus size: 159
70443 AAGAAAGCGT
* *
70453 ATATCATGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAGAATGGGGATT
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTG--AAAAGAATGGAGATT
* * * *
70518 AGTATGAGTATTCATGTTTGTCTTATTTAAGAG-AC-AACTTTGATTCTATCGATAACGGTGGAA
64 AGTATGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAATAATGGTGGAA
* *
70581 AGAAAAGCTTCTCTTGCGACACCAAAGCATTA
128 AGAAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * * * * * * * *
70613 ATGTCATGCATCCTAATGA-AAGGA-TTTGTTTTTGGTTCCCAATCTTGAAAAGAGTGGAGACTT
1 ATATCATGTATCCTTATGAGAA-GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGA-TT
* * * ** *
70676 -TTATGAGAATCAATGCATGTCTCATTTAA-AGTACAAACTTTGAATT-TAAGGAA-AATAAG-G
64 AGTATGAGATTC-ATGCTTGTCTCATTTAAGAGTACAAACTTTG-ATTCT-ATCAATAAT-GGTG
* * * * ** *
70736 CAAAGAAAAGATT-TCCATGCAAAAGAAAACCATCA
125 GAAAGAAAAGCTTCT-CTTGCGAAACCAAAGCATCA
* * * * * *
70771 ATATCATTTATCC-TAT-AGAACAGAATGTGTTTATAGTGCCTAATCAC-GAAATGAATGTAGAT
1 ATATCATGTATCCTTATGAG-A-AGACTATGTTTATGGTGCCTAATC-CTGAAAAGAATGGAGAT
*** * * * * *
70833 CCCTACTG-GAATCCATGCTTGTCTCATTTGAG-GCACAAACTTAGAATT-TA-CAAAAATTGGT
63 TAGTA-TGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTG-ATTCTATCAATAA-TGGT
* *
70894 GGGAAG-AAAG-TGTTTCTTGCGAAACCAAAGCATCA
124 GGAAAGAAAAGCT-TCTCTTGCGAAACCAAAGCATCA
* * * *
70929 ATATCATGTATCCTTATTAGATGACTATGTTTATGGTGCCTAAT-CTAGTATAGAATGTG-GATT
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATG-GAGATT
* * ** * * * *
70992 AGTATGTGTTTTCATATTTTTCTTATTTGAG-GGACAAACTTTGATTCTATCAATAATGGTGGAA
64 AGTATGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAATAATGGTGGAA
* * *
71056 AGAAAAACTTCTCTTGTGACACCAAAGCATCA
128 AGAAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * ** *** * * * * **
71088 ATGTCATGCATCC-TAACA-AAGGGAATGTGTTCTTGTTCCCAATATTTG-AAAGAATGGAGACT
1 ATATCATGTATCCTTATGAGAAGACTATGT-TTATGGTGCCTAAT-CCTGAAAAGAATGGAGA-T
* * * * * * * **
71150 T-TTACGAGAATCAATGCATGCCTCATTTAA-AGTATAAACTTTGATTTTAAGGAA-AATGAG-G
63 TAGTATGAGATTC-ATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCT-ATCAATAATG-GTG
* * * * ** *
71211 CAAAGAAAAGATT-TCCATGCAAAAGAAAACCATCA
125 GAAAGAAAAGCTTCT-CTTGCGAAACCAAAGCATCA
* * * * * *
71246 ATATCAT-TAATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATGAC--AAAATGAATGAAGAT
1 ATATCATGT-ATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CCTGAAAA-GAATGGAGAT
*** * * * * * * ** *
71308 CCTTACT-AGAATCTATGTTTCTCTAATTTGAG-GAATGAAC-TT-ATTCTTTAT-AAGAATAGG
63 TAGTA-TGAGATTC-ATGCTTGTCTCATTTAAGAGTACAAACTTTGATTC--TATCAATAAT-GG
* * * *
71368 TGGGAAG-AAAGCGTATCTTGCGAAACCAAAGCATTA
123 TGGAAAGAAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * * *
71404 ATATCATGTATCCTTATGAGAATACTATGTTTATGGTGCCTAATCCTAAAAAGAAAGGGGATTAG
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG
* * * * ** *
71469 TATGAGTATTCATGTTTGTCTTATTTAAAAG-ACAAACCTTGATTCTATCAATAACAGCGGAAAG
66 TATGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAATAATGGTGGAAAG
* * *
71533 ACAAGCTTCTCTTGCGACACCAAAGCATTA
130 AAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * * * * * *
71563 ATGTCATGTATCCTAATGAAGGAA-A-TAAGTTTTTGGAT-CCTAATCTTGAAAAGAAAGGGGAC
1 ATATCATGTATCCTTATG-A-GAAGACTATGTTTATGG-TGCCTAATCCTGAAAAGAATGGAGA-
* * * * * *
71625 TT-TTATGAGAATCAATGCATGTCTCATATAA-AGTACAAACTTTGATT-T-T-AAGGAA-GATA
62 TTAGTATGAGATTC-ATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAA-TAATGGT-
* * * ** *
71684 AGGCAAAGAAAAGATT-TTTATGCAAAAGAAAACCATCA
124 -GG-AAAGAAAAGCTTCTCT-TGCGAAACCAAAGCATCA
* * * * * * * * * * *
71722 ATATCATTTATCCTAAAGAGCATAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCT-
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGAT-TA
* ** * * *
71786 CTACAAGA---ATCCATGTCTCATTT--GAGTA-ATGAAC--TGATACCT-TACACA-AATTGGT
65 GTATGAGATTCATGCTTGTCTCATTTAAGAGTACA--AACTTTGAT-TCTAT-CA-ATAA-TGG-
* * * *
71841 TGG-AAG-AAAGCGTATCTTGTGAATCCAAAGCATCA
123 TGGAAAGAAAAGCTTCTCTTGCGAAACCAAAGCATCA
* *
71876 ATATCATGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG
* * * *
71941 CATGAGTATTCATGTTTGTCTTATTTAAGAG-AC-AACTTTGATTCTATCAATAACGGTGGAAAG
66 TATGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAATAATGGTGGAAAG
*
72004 AAAAGCTTCTCTTGCGACACCAAAGCATCA
130 AAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * * * *
72034 ATGTCATGTATCCTAATGA-AAGGA--ATGTGTAT--TTCGT--TCCT-AATAAGAATGGAGACT
1 ATATCATGTATCCTTATGAGAA-GACTATGTTTATGGTGCCTAATCCTGAA-AAGAATGGAGA-T
* * * * * * *
72091 T-TTACGAGAATCAATGCCTGTCTCATTTAA-AGTACAAACTTTGATTTTATGGAA-AATAAG-G
63 TAGTATGAGATTC-ATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTAT-CAATAAT-GGTG
* * * * * * ** *
72152 CAAGGAAAAGATTTTCATGCAAAAGAAAACCATCA
125 GAAAGAAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * * * * * * * * * * **
72187 ATATCATTTATCCTAATGAGGAGAATGTGTTTGTTGTTCCTAATCATGAAATGAATGAAGATCCG
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG
* * * * * *
72252 TACTG-GAATCCATGCTTGTCTCATTTGAG-GCACAAACTTAGAATT-TA-CAAAAATTGGTGGG
66 TA-TGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTG-ATTCTATCAATAA-TGGTGGA
* *
72313 AAG-AAAG-TGTTTCTTGTGAAACCAAAGCATCA
127 AAGAAAAGCT-TCTCTTGCGAAACCAAAGCATCA
* * * * *
72345 ATATCTTGTATCCTTATTAGATGACTATGTTTATGGTGCCTAAT-CTAGAATATAATGTG-GATT
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATG-GAGATT
* * * * * *
72408 AGTTTGTGTATTCATGTTTTTCTTATTTGAGAG-ACAAACTTTGATTCTATCAATAATGGTGGAA
64 AGTATGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAATAATGGTGGAA
* *
72472 AGAAAAGCTTCTCTTGTGACACCAAAGCATCA
128 AGAAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * ** *** * * * * * * *
72504 ATGTCATGCATCC-TAACA-AAGGGAATGTGTTCTTGTTCCCAAT-ATTAGAATGAATGGAGACT
1 ATATCATGTATCCTTATGAGAAGACTATGT-TTATGGTGCCTAATCCTGA-AAAGAATGGAGA-T
* * * * * **
72566 T-TTACGAGAATCAATGCTTGCCTCATTTAA-AGTACAAACTTTGATTTTAAGGAA-AATGAG-G
63 TAGTATGAGATTC-ATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCT-ATCAATAATG-GTG
* * * * ** *
72627 CAAAGAAAAGATT-TCCATGCAAAAGAAAACCATCA
125 GAAAGAAAAGCTTCT-CTTGCGAAACCAAAGCATCA
* * * * * *
72662 ATATCAT-TAATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC--AAAATGAATGAAGAT
1 ATATCATGT-ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-GAATGGAGA-
* * * * * ** * * * **
72724 CCTTACTA-GA-ATCCATGTTTGTCTCATTTGAG-GCATGAACTTAGAATT-T-GCAAAAATTAT
62 --TTAGTATGAGATTCATGCTTGTCTCATTTAAGAGTACAAACTTTG-ATTCTATCAATAATGGT
* * *
72784 GGGAA-AAAAGCGTT-TCTTGCGAAATCATATG-ATCA
124 GGAAAGAAAAGC-TTCTCTTGCGAAACCA-AAGCATCA
* * * ** * *
72819 ATATCCTGTATCCATATAAGAAGACTAT-TTTATAATGCCTAATCCTAAAAATAATGG-GATTAG
1 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG
* * * * * * * * * * *
72882 TATGAGTATTCAAGTTTGTATTATTTAAGAG-ATAAATTTTGATTTTACCGATAATGTTAGAAAG
66 TATGAG-ATTCATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAATAATGGTGGAAAG
* * *
72946 AAAAGCCTCTCTTGCGACACCAAAGCAACA
130 AAAAGCTTCTCTTGCGAAACCAAAGCATCA
* * *
72976 ATGTCAAGTATCCTAATGA
1 ATATCATGTATCCTTATGA
72995 AGGGAATGCG
Statistics
Matches: 1725, Mismatches: 480, Indels: 357
0.67 0.19 0.14
Matches are distributed among these distances:
151 7 0.00
152 39 0.02
153 70 0.04
154 83 0.05
155 57 0.03
156 53 0.03
157 183 0.11
158 635 0.37
159 524 0.30
160 64 0.04
161 8 0.00
162 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (159 bp):
ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAG
TATGAGATTCATGCTTGTCTCATTTAAGAGTACAAACTTTGATTCTATCAATAATGGTGGAAAGA
AAAGCTTCTCTTGCGAAACCAAAGCATCA
Found at i:73242 original size:291 final size:288
Alignment explanation
Indices: 72761--73333 Score: 765
Period size: 291 Copynumber: 2.0 Consensus size: 288
72751 TTGAGGCATG
* * * * *
72761 AACTTAGAATTTGCAAAAATTATGGGAAAAAAGCGTTTCTTGCGAAATCATATGATCAATATCCT
1 AACTTAGAATTTACAAAAATTATGGGAAAAAACCGTTTCTTGCGAAACCAAATCATCAATATCCT
* *
72826 GTATCCATATAAGAAGACTATTTTATAATGCCTAATCCTAAAAATAATGGGATTAGTATGAGTAT
66 GTATCCATATAAGAAGACTATTTTATAACGCCTAATCCTAAAAAGAATGGGATTAGTATGAGTAT
* * * *
72891 TCAAGTTTGTATTATTTAAGAGATAAATTTTGATTTTACCGATAATGTTAGAAAGAAAAGCCTCT
131 TCAAGTTTATATTATTTAAGAGATAAACTTTGATTTTACCGATAACGGTAGAAAGAAAAGCCTCT
* * *
72956 CTTGCGACACCAAAGCAACAATGTCAAGTATCCTAATGAAGGGAATGCGTTTTTGGTTCCCAATC
196 CTTGCGACACCAAAGCAACAATGTCAAGTATCCTAACGAAGAGAAAGCGTTTTTGGTTCCCAATC
*
73021 TT-GAAAAGAATGGAGACTTTTAGGCACA
261 TTGGAAAA-AATGGAAACTTTTAGGCACA
* *
73049 AACTTAGAATTTACAAAAATTGGA-GGGAAAAAACCGTTTCTTGCTAGACCAAATCATCAATATC
1 AACTTAGAATTTACAAAAATT--ATGGGAAAAAACCGTTTCTTGCGAAACCAAATCATCAATATC
** * ** * * *
73113 CTGTATCTTTATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAGGAATGGGTATTAGTGTGA
64 CTGTATCCATATAAGAAGACTAT-TTTATAACGCCTAATCCTAAAAAGAATGGG-ATTAGTATGA
* * * * *
73178 GTATTCATGTTTATCTTATTTAAGAGATAGACTTTGATTTTATC-ATCAACGGTGGAAAGAAAAG
127 GTATTCAAGTTTATATTATTTAAGAGATAAACTTTGATTTTACCGAT-AACGGTAGAAAGAAAAG
* * * *
73242 CTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGAGAAAGTGTTTTTGGTTCC
191 CCTCTCTTGCGACACCAAAGCAACAATGTCAAGTATCCTAACGAAGAGAAAGCGTTTTTGGTTCC
73307 CAATCTTGGAAAAAATGGAAACTTTTA
256 CAATCTTGGAAAAAATGGAAACTTTTA
73334 CGAGAATCAA
Statistics
Matches: 245, Mismatches: 34, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
288 20 0.08
289 54 0.22
290 27 0.11
291 139 0.57
292 5 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (288 bp):
AACTTAGAATTTACAAAAATTATGGGAAAAAACCGTTTCTTGCGAAACCAAATCATCAATATCCT
GTATCCATATAAGAAGACTATTTTATAACGCCTAATCCTAAAAAGAATGGGATTAGTATGAGTAT
TCAAGTTTATATTATTTAAGAGATAAACTTTGATTTTACCGATAACGGTAGAAAGAAAAGCCTCT
CTTGCGACACCAAAGCAACAATGTCAAGTATCCTAACGAAGAGAAAGCGTTTTTGGTTCCCAATC
TTGGAAAAAATGGAAACTTTTAGGCACA
Found at i:74931 original size:475 final size:474
Alignment explanation
Indices: 73049--76840 Score: 5088
Period size: 475 Copynumber: 8.0 Consensus size: 474
73039 TTTAGGCACA
* * * * * * * *
73049 AACTTAGAATTTACAAAAATTGGAGGGAAAAAACCGTTTCTTGCTAGACCAAATCATCAATATCC
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * * *
73114 TGTATCTTTATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAGGAATGGGTATTAGTGTGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-ATTAGTATGAG
* * * *
73179 TATTCATGTTTATCTTATTTAAGAGATAGACTTTGATTTTATCATCAACGGTGGAAAGAAAAGCT
130 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAT-AACGGTGGAAAGAAAAGCC
* *
73244 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGAGAAAGTGTTTTTGGTTCCCA
194 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCA
*
73309 ATCTTGGAAAA-AATGGAAACTTTTACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTG
259 ATCTT-GAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
* * * * * *
73373 ATTTTAAGGAAAGTGAGGCAAATAAAAGATTTCCAAGTAAAAGAAAACCATCAATATCGTTTATC
323 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATC
* * * *
73438 CCAATGGGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAAT-ATAGATCCTTACTAGAATCC
388 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGA-AGATCCTTACTAGAATCC
73502 ATGTTTGTCTCATTTGAGGAATG
452 ATGTTTGTCTCATTTGAGGAATG
* * * *** * *
73525 AACTTATACTTTACAAAAATTGGTGGGAAGAGAGCGTCTCCCACGAAACTAAAGAATCAATATCA
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * * * * *
73590 TGTATCCTTATAAGAAGACTAGGTTTTTGCTGCTTAAT-CTAGAAAAGAATGTGGATTAATATGA
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATG-GGATTAGTATGA
* * * * * ** * *
73654 CTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAATAATTGTGAAAAGAACAGC
129 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT-CATAACGGTGGAAAGAAAAGC
* * * **
73719 TTCTCTTGCAACACCAAAGCATCAACGTCATACATCCTAATGAAGAGAATGTGTTTTTTTGGTTC
193 CTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG--TTTTTGGTTC
* * * *
73784 CCAATCTTGAAAAGAAAGGAGACTTTTACGAGAATCAATGCATATCTCATTTAAAGTGCAAACTT
256 CCAATCTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
*
73849 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTA
321 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTA
* * * * * *
73914 TCTTAATGAGGAGAATGAGTTTATGGTGCCTAATCACGAAATGAATAAAAGATCCTTATTACAAT
386 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAAT-GAAGATCCTTACTAGAAT
*
73979 CCATGTTTGTCTCAGTTGAGGAATG
450 CCATGTTTGTCTCATTTGAGGAATG
* * *** * *
74004 AACTTATACTTTACAAAAATTGGTGGGAAGAGAGCGTTTCCCACAAAACCAAAGAATCAATATCA
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* *
74069 TGTATCCTTATGAGAAGACTATGTTTCTGGTGCCTAAT-CTAGAAAAGAATGTGGATTAATATGA
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATG-GGATTAGTATGA
* * * * * * *
74133 CTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAATAATGGTGGAAAGAACAGC
129 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTAT-CATAACGGTGGAAAGAAAAGC
* * * * *
74198 TTCTTTTGCGACACCAAAGCATCAACGTTATATATCCTAATGAAGAGAATGTGTTTTTTTGGTTC
193 CTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTG--TTTTTGGTTC
* * * * *
74263 CCAATCTTGAAAAGAAAGGAGACTTTTACGAGAATCAATGCATATCTCATTTAAAGTGCAGACTT
256 CCAATCTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
* * *
74328 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCACTATCACTTA
321 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTA
*
74393 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATC
386 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATC
* **
74458 CATGTTTGTCTCATTTGAGGTACA
451 CATGTTTGTCTCATTTGAGGAATG
* * * * * * *
74482 AACTTAGAATTTACAAAAATTGGTAGGAAAAAAGTGTTTCTTGCGAAACTAAATCATCAATATCT
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * *
74547 TGTATCCATATGAGAAGACTATGTTTAGGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAG
* * * * *
74612 TATTCATGTTTCTATTATTTAAGGGACAAATTTTGATTTTATCATTAACGGTGGAAAGAAAAGCT
130 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA-TAACGGTGGAAAGAAAAGCC
* * * *
74677 TCTCTTGCAACACAAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCA
194 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCA
* * ** *
74741 ATCTTGGAAAGACTGGAAACTTTTATAAGAATCAAAGCATGTCTCATTTAAAGTACAAACTTTGA
259 ATCTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA
* *
74806 TTTTAAGGAAAATAAGGCAAGGAAAAGATTTCCATGCAAAAGAAAACCATCAACATCATTTATCC
324 TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCC
* *
74871 TAATGAAGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTTCTAGAATCC-T
389 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCAT
* * *
74935 GGTTTGTCTCATTTGAAGCAGG
454 -GTTTGTCTCATTTGAGGAATG
* * * * *
74957 AACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAATCGTCAATATCC
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * *
75022 TGTATCCGTATAAGAAGACTATGTTTAGGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGT
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGT
* * * *
75087 ATTCAAGTTTATCTTATTTAAGAGACAAATTTTGATTTTATCGATAACGTTGGAAAGAAAAGCCT
131 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC-ATAACGGTGGAAAGAAAAGCCT
* * * * * * * *
75152 CTCTTGCGACACCAAAGTATCAATGCCATGTATCCTAAAGCAGAGATTGTATTTTTGGCTCCTAA
195 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAA
* *
75217 TCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGAT
260 TCTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
*
75282 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATCCT
325 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCT
* * *
75347 AATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATG
390 AATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATG
* *
75412 TTTGTCTCAATTGAGCAATG
455 TTTGTCTCATTTGAGGAATG
* ** * *
75432 AACTCATAATTTACCCAAATTGGTGGGAAGAAAGCGTATCTTGTGAAACCAAAGCATCAATATCA
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
*
75497 TGTATCCTTATGAGAAGATTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAG
* ** * *
75562 TATTCACGCCTGTCTTATTTAAGAGACAAACTTTGATTATA-CAGATAACGTTGGAAAGAAAAGC
130 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC--ATAACGGTGGAAAGAAAAGC
* * *
75626 CTCTCCTGCGACACCAAGGCATCAATGTCATGTATCCTAATGCAG-GAAATGTGTTTTTGGTTCC
193 CTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAG-AATGTGTTTTTGGTTCC
* * * * *
75690 CAATCTTGAAAACAACGGAAACTTTTATGAGAATCAATGCCTGTCTCATTTAAAGTTCAAACTTT
257 CAATCTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT
* *
75755 GATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAGAAAACCATCAATATCATTTAT
322 GATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTAT
* * * *
75820 CCTAAAGAGCAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCC
387 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCC
*
75885 ATGTTTGTCTCATTTGAGCAATG
452 ATGTTTGTCTCATTTGAGGAATG
* * * * * * *
75908 AACTCATACTTTAC-ACAATTGGTTGGAAGAAAGCGTATCTTGTGAATCCAAAGCATCAATATCA
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* *
75972 TGCATCCTTATGAGAAGACTATTTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAG
** * * * *
76037 TATTCATGTAAGTCTTATTTAAAAGACAAATTTTGATTTTATTGATAACGTTGGAAAGAAAAGCC
130 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA-TCATAACGGTGGAAAGAAAAGCC
* * * *
76102 TCTTTTGCGACACCAAAGCATCAATGTCATGTACCCTAATAAAGGGAATGTGTTTTTGGTTCCCA
194 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCA
* * *
76167 ATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATATAAAGTACAAACTTCGA
259 ATCTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA
76232 TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCC
324 TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCC
** * * * *
76297 TAAAAAGCAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAAATCCCTACAAGAATCCAT
389 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCAT
*
76362 GTTTGTCTCATTTGAGCAATG
454 GTTTGTCTCATTTGAGGAATG
* * * * * * *
76383 AACTCATACTTTACACAAATTGGTTGGAAGAAAGCGTATCTTGTGAATCCAAAGCATCAATATCA
1 AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* *
76448 TGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGGAAAGAATGGGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAG
** * * *
76513 TATTCATGTAAGTCTTATTTAAAAGACAAATTTTGATTTTATCGATAACGTTGGAAAGAAAAGCC
130 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC-ATAACGGTGGAAAGAAAAGCC
* *
76578 TCTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-AAGGGAATGTGTTTTTGGTTCCCA
194 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCA
*
76642 ATCTTGAAAAGAATGG-AACTTTTACGAGAATCAATGCATGTCTCATATAAAGTACAAACTTTGA
259 ATCTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA
* *
76706 TTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAACTATCAATATCATTTATCC
324 TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCC
* * * * *
76771 TAATGACGAGAATGTGCTTATAGTACTTAATCACAAAATGAATGAAG-TCCCTTACTAGAATCCA
389 TAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGAT-CCTTACTAGAATCCA
76835 TGTTTG
453 TGTTTG
76841 CCTTATTTTA
Statistics
Matches: 2999, Mismatches: 293, Indels: 50
0.90 0.09 0.01
Matches are distributed among these distances:
473 1 0.00
474 282 0.09
475 1100 0.37
476 748 0.25
477 10 0.00
478 402 0.13
479 455 0.15
480 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
AACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATAACGGTGGAAAGAAAAGCCTC
TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAAT
CTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGT
TTGTCTCATTTGAGGAATG
Found at i:75418 original size:159 final size:158
Alignment explanation
Indices: 73233--77129 Score: 1097
Period size: 159 Copynumber: 24.8 Consensus size: 158
73223 TCAACGGTGG
* * * * * * *
73233 AAAGAAAAG-CTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGAGAAAGTGT
1 AAAGAAAAGATTTC-CTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGT
* * * * * * *
73297 TTTTGGTTCCCAATCTTGGAAAA-AATGGAA-A-CTTTTACGAGAATCAATGCTTGTCTCATTTA
65 TTATGGTGCCTAATCAT-GAAAAGAAT-GAAGATC-CTTACGAGAATCCATGTTTGTCTCATTTA
* *
73359 AAGTACAAACTTTGATTTTAAGGAAAGTGAGGC
127 AAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* ** ** * * * * * *
73392 AAATAAAAGATTTCCAAGTAAAAGAAAACCATCAATATCGTTTATCCCAATGGGGAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTT
* * * *
73457 TATGGTGCCTAATCATGAAATGAAT-ATAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG
66 TATGGTGCCTAATCATGAAAAGAATGA-AGATCCTTACGAGAATCCATGTTTGTCTCATTTAAAG
* ** * ** *
73521 AATGAACTTAT-ACTTTACA-AAAATTGGTGG
130 TACAAACTT-TGATTTTA-AGAAAATAAG-GC
* * * * ** * * * * * *
73551 GAAG-AGAGCGTCTCC-CACGAAACTAAAGAATCAATATCATGTATCCTTATAAGAAGACTAG-G
1 AAAGAAAAG-ATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAAT-GTG
* * * ** *** * ** * * * *
73613 TTTTTGCTGCTTAATC-TAGAAAAGAATGTGGATTAATATGACTATTCAAGTTTGTTTTATTTAA
64 TTTATGGTGCCTAATCAT-GAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAA
* * *
73677 GAG-ACAAACTTTGATTCTATAA-ATAAT-TGTGA
128 -AGTACAAACTTTGATT-T-TAAGAAAATAAG-GC
* * * ** ** *
73709 AAAGAACAG-CTTCTCTTGC-AACACCAAAGCATCAACGTCATACATCCTAATGAAGAGAATGTG
1 AAAGAAAAGATTTC-CTTGCGAA-ACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTG
* * * * * * * * ** *
73772 TTTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGA-CTTTTACGAGAATCAATGCATATCTCATTT
64 --TTTATGGTGCCTAATCATGAAAAGAATGAAGATC-CTTACGAGAATCCATGTTTGTCTCATTT
*
73836 AAAGTGCAAACTTTGATTTTAAGGAAAATAAGGC
126 AAAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * * * * * *
73870 AAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCTTAATGAGGAGAATGAGTT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTT
* * * ** * * * *
73935 TATGGTGCCTAATCACGAAATGAATAAAAGATCCTTATTACAATCCATGTTTGTCTCAGTTGAGG
66 TATGGTGCCTAATCATGAAAAGAAT-GAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAAAG
* ** * ** *
74000 AATGAACTTAT-ACTTTACA-AAAATTGGTGG
130 TACAAACTT-TGATTTTA-AGAAAATAAG-GC
* * * ** * * * * * * *
74030 GAAG-AGAGCGTTTCC-CACAAAACCAAAGAATCAATATCATGTATCCTTATGAGAAGACTATGT
1 AAAGAAAAG-ATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGT
* ** *** * ** * * * *
74093 TTCTGGTGCCTAATC-TAGAAAAGAATGTGGATTAATATGACTATTCAAGTTTGTTTTATTTAAG
65 TTATGGTGCCTAATCAT-GAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAA-
* * *
74157 AG-ACAAACTTTGATTCTATAA-ATAAT-GGTGG
128 AGTACAAACTTTGATT-T-TAAGAAAATAAG-GC
* * * * * ** * * *
74188 AAAGAACAG-CTTCTTTTGCGACACCAAAGCATCAACGTTATATATCCTAATGAAGAGAATGTGT
1 AAAGAAAAGATTTC-CTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTG-
* * * * * * * * ** *
74252 TTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGA-CTTTTACGAGAATCAATGCATATCTCATTTA
64 -TTTATGGTGCCTAATCATGAAAAGAATGAAGATC-CTTACGAGAATCCATGTTTGTCTCATTTA
* *
74316 AAGTGCAGACTTTGATTTTAAGGAAAATAAGGC
127 AAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * * * *
74349 AAAGAAAAGATTTTCATGCAAAAGAAAACCATCACTATCACT-TATCCTAATGAGGAGAATGTGT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCA-TGTATCCTAATGAGGAGAATGTGT
* * * * *
74413 TTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG
65 TTATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAAAG
* * * *
74478 TACAAACTTAGAATTTACA-AAAAT-TGGT
130 TACAAACTTTGATTTTA-AGAAAATAAGGC
* * * * * * *
74506 AGGAA-AAAAG-TGTTTCTTGCGAAACTAAATCATCAATATCTTGTATCC-ATATGAGAAGACTA
1 A--AAGAAAAGAT-TTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTA-ATGAGGAGAATG
* * * * *** * * * * * *
74568 TGTTTAGGGTGCCTAATCCTAAAAAGAAT-AGGGATTAGTATGAGTATTCATGTTTCTATTATTT
62 TGTTTATGGTGCCTAATCATGAAAAGAATGA-AGATCCTTACGAGAATCCATGTTTGTCTCATTT
* * * ** * *
74632 AAGGGACAAATTTTGATTTT-A-TCATTAACGGTGG
126 AAAGTACAAACTTTGATTTTAAGAAAATAA--G-GC
* **
74666 AAAGAAAAG-CTTCTCTTGC-AACACAAAAGCATCAATGCCATGTATCCTAATGAAGG-GAATGT
1 AAAGAAAAGATTTC-CTTGCGAA-ACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGT
* * * * * * ** * * **
74728 GTTT-TGGTTCCCAATCTTGGAAAGACTGGAA-A-CTTTTATAAGAATCAAAGCATGTCTCATTT
63 GTTTATGGTGCCTAATCATGAAAAGAAT-GAAGATC-CTTACGAGAATCCATGTTTGTCTCATTT
74790 AAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
126 AAAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * * * * * *
74824 AAGGAAAAGATTTCCATGCAAAAGAAAACCATCAACATCATTTATCCTAATGAAGAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTT
* * * * * *
74889 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTTCTAGAATCC-TGGTTTGTCTCATTTGAAG
66 TATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCAT-GTTTGTCTCATTTAAAG
* ** * * ** *
74953 CAGGAACTTAGAATTTACA-AAAATTGGTGG
130 TACAAACTTTGATTTTA-AGAAAATAAG-GC
* * * * * * * * * *
74983 GAAG-AAAG-TGTTTCTTGCGAAACCAAATCGTCAATATCCTGTATCCGT-ATAAGAAGACTATG
1 AAAGAAAAGAT-TTCCTTGCGAAACAAAAGCATCAATATCATGTATCC-TAATGAGGAGAATGTG
* * * *** * * * * * *
75045 TTTAGGGTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCAAGTTTATCTTATTTAAG
64 TTTATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAA-
* * * *
75109 AG-ACAAATTTTGATTTTATCGATAACGT-TGG-
128 AGTACAAACTTTGATTTTA-AGA-AA-ATAAGGC
** * * * ** * * *
75140 AAAGAAAAG-CCTCTCTTGCGACACCAAAGTATCAATGCCATGTATCCTAAAGCA-GAGATTGTA
1 AAAGAAAAGATTTC-CTTGCGAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTG
* * * * * **
75203 TTTTTGGCT-CCTAATCTTGAAAAGAATGGAGA-CTTTTACGAGAATCAATGCATGTCTCATTTA
64 TTTATGG-TGCCTAATCATGAAAAGAATGAAGATC-CTTACGAGAATCCATGTTTGTCTCATTTA
*
75266 AAGTATAAACTTTGATTTTAAGGAAAATAAGGC
127 AAGTACAAACTTTGATTTTAA-GAAAATAAGGC
** * * * *
75299 AAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTT
* * * * * * *
75364 TATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTCTCAATT-GAGC
66 TATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAAAGT
* * *** ** *
75428 A-ATGAACTCAT-AATTTACCCAAATTGGTGG
131 ACA--AACT-TTGATTTTAAGAAAATAAG-GC
* * * * * * * * *
75458 GAAG-AAAGCGTAT-CTTGTGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGATTATGT
1 AAAGAAAAG-ATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGT
* ** *** * * * * ** *
75521 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACGCCTGTCTTATTTAAGA
65 TTATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAA-A
* * *
75586 G-ACAAACTTTGATTATACAGATAACGT-TGG-
129 GTACAAACTTTGATTTTA-AGA-AA-ATAAGGC
* * * * * *
75616 AAAGAAAAGCCTCTCC-TGCGACACCAAGGCATCAATGTCATGTATCCTAATGCAGGA-AATGTG
1 AAAGAAAAG-ATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTG
* * * * * * * * * **
75679 TTTTTGGTTCCCAATCTTGAAAACAACGGAA-A-CTTTTATGAGAATCAATGCCTGTCTCATTTA
64 TTTATGGTGCCTAATCATGAAAAGAA-TGAAGATC-CTTACGAGAATCCATGTTTGTCTCATTTA
*
75742 AAGTTCAAACTTTGATTTTAAGAAAAATAAGGC
127 AAGTACAAACTTTGATTTTAAG-AAAATAAGGC
* * * * * * * *
75775 AAAGAAAAGATTTCCATACAAAAGAAAACCATCAATATCATTTATCCTAAAGAGCAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTT
* * * * * * *
75840 TATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTCTCATTT-GAGC
66 TATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAAAGT
* * * * * *
75904 A-ATGAACTCAT-ACTTT-ACACAAT-TGGTTG
131 ACA--AACT-TTGATTTTAAGAAAATAAGG--C
* * * * * * * * * * * *
75933 GAAG-AAAGCGTAT-CTTGTGAATCCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATTT
1 AAAGAAAAG-ATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGT
* ** *** * * * ** *
75996 TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTAAGTCTTATTTAAAA
65 TTATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTT-AAA
* * * *
76061 G-ACAAATTTTGATTTTATTGATAACGT-TGG-
129 GTACAAACTTTGATTTTA-AGA-AA-ATAAGGC
* * * * * *
76091 AAAGAAAAGCCTCTT--TTGCGACACCAAAGCATCAATGTCATGTACCCTAATAAAGG-GAATGT
1 AAAGAAAAG-AT-TTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAAT-GAGGAGAATGT
* * * * * * * ** *
76153 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA-CTTTTACGAGAATCAATGCATGTCTCATATA
63 GTTTATGGTGCCTAATCATGAAAAGAATGAAGATC-CTTACGAGAATCCATGTTTGTCTCATTTA
*
76217 AAGTACAAACTTCGATTTTAAGGAAAATAAGGC
127 AAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * * * ** *
76250 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAAAAAGCAGAATGTGTT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTT
* * * * * * * *
76315 TATAGTGCCTAATCACGAAATGAATGAAAATCCCTACAAGAATCCATGTTTGTCTCATTT-GAGC
66 TATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAAAGT
* * * * *
76379 A-ATGAACTCAT-ACTTTACA-CAAAT-TGGTTG
131 ACA--AACT-TTGATTTTA-AGAAAATAAGG--C
* * * * * * * * * * *
76409 GAAG-AAAGCGTAT-CTTGTGAATCCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGT
1 AAAGAAAAG-ATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGT
* * ** *** * * * ** *
76472 TTATGGTGCCTAATCCTGGAAAGAATGGGGATTAGTATGAGTATTCATGTAAGTCTTATTTAAAA
65 TTATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTT-AAA
* * * *
76537 G-ACAAATTTTGATTTTATCGATAACGT-TGG-
129 GTACAAACTTTGATTTTA-AGA-AA-ATAAGGC
* * * * *
76567 AAAGAAAAGCCTCTT--TTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAGG-GAATGTG
1 AAAGAAAAG-AT-TTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTG
* * * * * * * ** *
76629 TTTTTGGTTCCCAATCTTGAAAAGAATG--GAACTTTTACGAGAATCAATGCATGTCTCATATAA
64 TTTATGGTGCCTAATCATGAAAAGAATGAAGATC-CTTACGAGAATCCATGTTTGTCTCATTTAA
*
76692 AGTACAAACTTTGATTTTAAGGAAAATATGGC
128 AGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * * * *
76724 AAAGAAAAGATTTCCATGCAAAAGAAAA-CTATCAATATCATTTATCCTAATGACGAGAATGTGC
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGC-ATCAATATCATGTATCCTAATGAGGAGAATGTGT
* * * * *
76788 TTATAGTACTTAATCA-CAAAATGAATGAAG-TCCCTTACTAGAATCCATGTTTG-C-C--TT--
65 TTATGGTGCCTAATCATGAAAA-GAATGAAGAT-CCTTACGAGAATCCATGTTTGTCTCATTTAA
* * **
76845 A-T------TTT-A---T-CGATAATGTTGG-
128 AGTACAAACTTTGATTTTAAGAAAAT-AAGGC
* * * *
76864 AAAGAAAAGCCTTT-CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTG
1 AAAGAAAAG-ATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATG-AGGAGAATGTG
* * * *
76927 TTTTTGGTTCCCAATCTTGAAAAGAAT---G--------GAG-A--C---TTT-TCTCATTTAAA
64 TTTATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAAA
*
76974 GTACAAACTTTGGTTTTAAGGAAAATAAGGC
129 GTACAAACTTTGATTTTAA-GAAAATAAGGC
** * * * * *
77005 AAAGAAAAGATTTCGATGCAAAAGAAAA-CTATCAATATCATTTATCCTAATGAGGACAATATGT
1 AAAGAAAAGATTTCCTTGCGAAACAAAAGC-ATCAATATCATGTATCCTAATGAGGAGAATGTGT
* * * * *
77069 TTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTTATTT
65 TTATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTT
77130 GAGGCATGAA
Statistics
Matches: 2615, Mismatches: 888, Indels: 470
0.66 0.22 0.12
Matches are distributed among these distances:
123 4 0.00
124 1 0.00
126 3 0.00
128 2 0.00
129 3 0.00
135 3 0.00
137 1 0.00
139 1 0.00
140 73 0.03
141 80 0.03
142 1 0.00
144 1 0.00
145 1 0.00
146 3 0.00
152 3 0.00
153 2 0.00
155 5 0.00
156 19 0.01
157 240 0.09
158 795 0.30
159 1047 0.40
160 100 0.04
161 216 0.08
162 11 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (158 bp):
AAAGAAAAGATTTCCTTGCGAAACAAAAGCATCAATATCATGTATCCTAATGAGGAGAATGTGTT
TATGGTGCCTAATCATGAAAAGAATGAAGATCCTTACGAGAATCCATGTTTGTCTCATTTAAAGT
ACAAACTTTGATTTTAAGAAAATAAGGC
Found at i:76221 original size:951 final size:953
Alignment explanation
Indices: 73049--76840 Score: 5132
Period size: 951 Copynumber: 4.0 Consensus size: 953
73039 TTTAGGCACA
* * * * * * * * *
73049 AACTTAGAATTTACAAAAATTGGAGGGAAAAAACCGTTTCTTGCTAGACCAAATCATCAATATCC
1 AACTTATACTTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * * * *
73114 TGTATCTTTATGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAGGAATGGGTATTAGTGTGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * *
73179 TATTCATGTTTATCTTATTTAAGAGATAGACTTTGATTTTA-TCATCAACGGTGGAAAGAAAAGC
131 TATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTTTATTGAT-AACGGTGGAAAGAAAAGC
* ** *
73243 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAACGAAGAGAAAGTGTTTTTGGTTCCC
195 CTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCC
* *
73308 AATCTTGGAAAA-AATGGAAACTTTTACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTT
260 AATCTT-GAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT
* * * * *
73372 GATTTTAAGGAAAGTGAGGCAAATAAAAGATTTCCAAGTAAAAGAAAACCATCAATATCGTTTAT
324 GATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTAT
* * * * *
73437 CCCAATGGGGAGAATGTGTTTATGGTGCCTAATCATGAAATGAAT-ATAGATCCTTACTAGAATC
389 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGA-AGATCCCTACAAGAATC
* * * * * *
73501 CATGTTTGTCTCATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAGAGAGCGTCTCC
453 CATGTTTGTCTCATTTGAGCAATGAACTCATAATTTACAAAAATTGGTGGGAAGAAAGCGTATCT
** * * * * * * *
73566 CACGAAACTAAAGAATCAATATCATGTATCCTTATAAGAAGACTAGGTTTTTGCTGCTTAAT-CT
518 TGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * *
73630 AGAAAAGAATGTGGATTAATATGACTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCT
583 -GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT
* * * * **
73695 AT-AAATAA--TTGTGAAAAGAACAGCTTCTCTTGCAACACCAAAGCATCAACGTCATACATCCT
647 ATCAGATAACGTTG-G-AAAGAAAAGCCTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCT
* *
73757 AATGAA-GAGAATGTGTTTTTTTGGTTCCCAATCTTGAAAAGAAAGGAGACTTTTACGAGAATCA
710 AATGAAGGA-AATGTG--TTTTTGGTTCCCAATCTTGAAAAGAACGGAAACTTTTACGAGAATCA
* * *
73821 ATGCATATCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA
772 ATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCA
* * * *
73886 TGCAAAAGAAAACCATCAATATCATTTATCTTAATGAGGAGAATGAGTTTATGGTGCCTAATCAC
837 TGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTGCCTAATCAC
* * * * * *
73951 GAAATGAATAAAAGATCCTTATTACAATCCATGTTTGTCTCAGTTGAGGAATG
902 GAAATGAAT-GAAGATCCCTACTAGAATCCATGTTTGTCTCATTTGAGCAATG
* *** * *
74004 AACTTATACTTTACAAAAATTGGTGGGAAGAGAGCGTTTCCCACAAAACCAAAGAATCAATATCA
1 AACTTATACTTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * *
74069 TGTATCCTTATGAGAAGACTATGTTTCTGGTGCCTAAT-CTAGAAAAGAATGTGGATTAATATGA
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGA
* * * * ** * *
74133 CTATTCAAGTTTGTTTTATTTAAGAGACAAACTTTGATTCTATAAATAATGGTGGAAAGAACAGC
130 GTATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTTTATTGATAACGGTGGAAAGAAAAGC
* * * * * *
74198 TTCTTTTGCGACACCAAAGCATCAACGTTATATATCCTAATGAAGAGAATGTGTTTTTTTGGTTC
195 CTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTG--TTTTTGGTTC
* * * *
74263 CCAATCTTGAAAAGAAAGGAGACTTTTACGAGAATCAATGCATATCTCATTTAAAGTGCAGACTT
258 CCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
* * * *
74328 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCACTATCACTTA
323 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTA
* *
74393 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATC
388 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATC
** ** * * * * * *
74458 CATGTTTGTCTCATTTGAGGTACAAACTTAGAATTTACAAAAATTGGTAGGAAAAAAGTGTTTCT
453 CATGTTTGTCTCATTTGAGCAATGAACTCATAATTTACAAAAATTGGTGGGAAGAAAGCGTATCT
* * * * *
74523 TGCGAAACTAAATCATCAATATCTTGTATCCATATGAGAAGACTATGTTTAGGGTGCCTAATCCT
518 TGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT
* * * * * *
74588 AAAAAGAATAGGGATTAGTATGAGTATTCATGTTTCTATTATTTAAGGGACAAATTTTGATTTTA
583 GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTA
* * * * *
74653 TCA-TTAACGGTGGAAAGAAAAGCTTCTCTTGCAACACAAAAGCATCAATGCCATGTATCCTAAT
648 TCAGATAACGTTGGAAAGAAAAGCCTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAAT
* * ** *
74717 GAAGGGAATGTG-TTTTGGTTCCCAATCTTGGAAAG-ACTGGAAACTTTTATAAGAATCAAAGCA
713 GAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAC-GGAAACTTTTACGAGAATCAATGCA
*
74780 TGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAGGAAAAGATTTCCATGCAA
777 TGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
*
74845 AAGAAAACCATCAACATCATTTATCCTAATGAAG-AGAATGTGTTTATAGTGCCTAATCACGAAA
842 AAGAAAACCATCAATATCATTTATCCTAATG-AGCAGAATGTGTTTATAGTGCCTAATCACGAAA
* * *
74909 TGAATGAAGATCCTTTCTAGAATCC-TGGTTTGTCTCATTTGAAGC-AGG
906 TGAATGAAGATCCCTACTAGAATCCAT-GTTTGTCTCATTTG-AGCAATG
* * * * * *
74957 AACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAATCGTCAATATCC
1 AACTTATACTTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * *
75022 TGTATCCGTATAAGAAGACTATGTTTAGGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * *
75086 TATTCAAGTTTATCTTATTTAAGAGACAAATTTTGATTTTATCGATAACGTTGGAAAGAAAAGCC
131 TATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTTTATTGATAACGGTGGAAAGAAAAGCC
* * * * * * *
75151 TCTCTTGCGACACCAAAGTATCAATGCCATGTATCCTAA-AGCAGAGATTGTATTTTTGGCTCCT
196 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATA-AAGAGAATGTGTTTTTGGTTCCC
*
75215 AATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTG
260 AATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
75280 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATC
325 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATC
75345 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCA
390 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCA
* **
75410 TGTTTGTCTCAATTGAGCAATGAACTCATAATTTACCCAAATTGGTGGGAAGAAAGCGTATCTTG
455 TGTTTGTCTCATTTGAGCAATGAACTCATAATTTACAAAAATTGGTGGGAAGAAAGCGTATCTTG
* *
75475 TGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGATTATGTTTATGGTGCCTAATCCTGA
520 CGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* ** *
75540 AAAGAATGGGGATTAGTATGAGTATTCACGCCTGTCTTATTTAAGAGACAAACTTTGATTATA-C
585 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* * * *
75604 AGATAACGTTGGAAAGAAAAGCCTCTCCTGCGACACCAAGGCATCAATGTCATGTATCCTAATGC
650 AGATAACGTTGGAAAGAAAAGCCTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGA
* * *
75669 AGGAAATGTGTTTTTGGTTCCCAATCTTGAAAACAACGGAAACTTTTATGAGAATCAATGCCTGT
715 AGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAACGGAAACTTTTACGAGAATCAATGCATGT
* * *
75734 CTCATTTAAAGTTCAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCATACAAAAG
780 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
*
75799 AAAACCATCAATATCATTTATCCTAAAGAGCAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
845 AAAACCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTGCCTAATCACGAAATGAA
*
75864 TGAAGATCCCTACAAGAATCCATGTTTGTCTCATTTGAGCAATG
910 TGAAGATCCCTACTAGAATCCATGTTTGTCTCATTTGAGCAATG
* * * * * *
75908 AACTCATACTTTAC-ACAATTGGTTGGAAGAAAGCGTATCTTGTGAATCCAAAGCATCAATATCA
1 AACTTATACTTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* *
75972 TGCATCCTTATGAGAAGACTATTTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
66 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
* * * * *
76037 TATTCATG-TAAGTCTTATTTAAAAGACAAATTTTGATTTTATTGATAACGTTGGAAAGAAAAGC
131 TATTCAAGTTTA-TCTTATTTAAGAGACAAACTTTGATTTTATTGATAACGGTGGAAAGAAAAGC
* * *
76101 CTCTTTTGCGACACCAAAGCATCAATGTCATGTACCCTAATAAAGGGAATGTGTTTTTGGTTCCC
195 CTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCC
* *
76166 AATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATATAAAGTACAAACTTCG
260 AATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
*
76231 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATC
325 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATC
** * * *
76296 CTAAAAAGCAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAAATCCCTACAAGAATCCA
390 CTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCA
* * *
76361 TGTTTGTCTCATTTGAGCAATGAACTCATACTTTACACAAATTGGTTGGAAGAAAGCGTATCTTG
455 TGTTTGTCTCATTTGAGCAATGAACTCATAATTTACAAAAATTGGTGGGAAGAAAGCGTATCTTG
* * * *
76426 TGAATCCAAAGCATCAATATCATGCATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGG
520 CGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGA
** * *
76491 AAAGAATGGGGATTAGTATGAGTATTCATGTAAGTCTTATTTAAAAGACAAATTTTGATTTTATC
585 AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATC
* *
76556 -GATAACGTTGGAAAGAAAAGCCTCTTTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-A
650 AGATAACGTTGGAAAGAAAAGCCTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGA
* *
76619 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGG-AACTTTTACGAGAATCAATGCATGT
715 AGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAACGGAAACTTTTACGAGAATCAATGCATGT
* *
76683 CTCATATAAAGTACAAACTTTGATTTTAAGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAG
780 CTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAG
* * * * *
76748 AAAACTATCAATATCATTTATCCTAATGA-CGAGAATGTGCTTATAGTACTTAATCACAAAATGA
845 AAAACCATCAATATCATTTATCCTAATGAGC-AGAATGTGTTTATAGTGCCTAATCACGAAATGA
76812 ATGAAG-TCCCTTACTAGAATCCATGTTTG
909 ATGAAGATCCC-TACTAGAATCCATGTTTG
76841 CCTTATTTTA
Statistics
Matches: 2504, Mismatches: 304, Indels: 64
0.87 0.11 0.02
Matches are distributed among these distances:
948 5 0.00
949 164 0.07
950 549 0.22
951 759 0.30
952 113 0.05
953 128 0.05
954 172 0.07
955 204 0.08
956 7 0.00
957 395 0.16
958 6 0.00
959 2 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (953 bp):
AACTTATACTTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAG
TATTCAAGTTTATCTTATTTAAGAGACAAACTTTGATTTTATTGATAACGGTGGAAAGAAAAGCC
TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGAGAATGTGTTTTTGGTTCCCA
ATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA
TTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAAGCAAAAGAAAACCATCAATATCATTTATCC
TAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCAT
GTTTGTCTCATTTGAGCAATGAACTCATAATTTACAAAAATTGGTGGGAAGAAAGCGTATCTTGC
GAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA
GATAACGTTGGAAAGAAAAGCCTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAA
GGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAACGGAAACTTTTACGAGAATCAATGCATGTC
TCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGA
AAACCATCAATATCATTTATCCTAATGAGCAGAATGTGTTTATAGTGCCTAATCACGAAATGAAT
GAAGATCCCTACTAGAATCCATGTTTGTCTCATTTGAGCAATG
Found at i:79858 original size:476 final size:475
Alignment explanation
Indices: 78966--108693 Score: 38529
Period size: 476 Copynumber: 62.7 Consensus size: 475
78956 GTACAAACTT
*
78966 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGTG-GAATGTGCTTATAGTGCCTAATC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG-GAGAATGTGTTTATAGTGCCTAATC
* * * **
79030 ATGAAATGAAGGAAGATCCTTGCTAGAATCCATGTTTGTCTCATTTGACACACGAACTTAGAATT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
* * * * * * *
79095 TACAAAAATTGGTGGGAAGAAAGTGTTTCTTGTGAAACCAAAGCATCGATATCATGTATCTTTAT
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * *
79160 GAGAAGACTGTGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCC-AGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* * * ** *
79224 TGTCTTATTTAAGTGACAAACTTTGATTCCATCCATAGTGGTAGAAAGAAAAGCTTCTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* *
79289 CCCCAAAGCATCAATGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* *
79354 GATTGGAGACTTTTACGAGACTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
* *
79419 AATAAGGGAAAGAAAAGATTTTC
453 AATAAGGCAAAGAAAAGATTTCC
* * * * *
79442 ATGCAAAACAAAACCATAAATATTATTTATCCTAATGAGGAGAATATGTTTATAGTGTCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
79507 CGAAATGAATGAAGATCCTTAGTAGAATCCATGTTTGTCTCAATTGAGCCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * *
79572 ACAAAAAGTGATAGGAAAAAATCGTTTCTTGCGAAACCAAATCATCAATATCATGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
** *
79637 AGAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTAT
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT-T
* * * * * * *
79702 -TCTTATTTAGGAGATAAACTTTGATTTTATGATTAACGGTGGAAAGAAAAGCTTCTCTTACGAT
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* *
79766 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTAGTTCCCAATCTTGGAAAG
325 ACCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAG
79831 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
79896 AT-AGTGCAAAGAAAAGATTTCC
454 ATAAG-GCAAAGAAAAGATTTCC
* * * * *
79918 AGGCAAAAGAAAACCATCAATATCATGTATCCGAATGAGGAGAATGTGTTTATAGTGCCCAATTA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
79983 TGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGCGGCACGAACTTAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * *
80048 ACAAAAATTGTTGGGAAAAAAGAGATTCTTGC-AAAGCCAAATCAGCAATATCCTGTATCTTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAA-CCAAATCATCAATATCCTGTATCCTTAT
* * * *
80112 GAGAAGACTATTTTTACGATGCCTAATCCAGAAAAGAATGTGGATTGGTATGAATATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * *
80177 GTCTTAATTAAGAGACAAATTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* * * * *
80242 ACCAAACCATCAATGTCATTTATCCCAATGAAAGGAATGTGTTTTTGGTTCTCAAGCTTGAAAAG
325 ACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* *
80307 AATGGAGACATTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
*
80372 ATAAGGCAAAGAAAAGATTTTC
454 ATAAGGCAAAGAAAAGATTTCC
* * *
80394 ACGCAAAAGAAAACCATCAATATCATTTATCCTATTAAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
80459 CGAAATGAATGCAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * *
80524 ACAAAAATTAGG-GGGAAAAAAGCATTTCCTACGAAACCAAATCATCAATAACCTTTATCCTAAT
131 ACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* *
80588 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGAATTAGTATGAGTATTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* * * * * *
80652 TGTCTTATTTAAGAGACAAACTTT-ATTTTATCATTATCGGTGGAAAAAAAAGCTTTTCTTGCAA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * * * *
80716 CACCAAAGCCTCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * * *
80781 GAGTGGAGACTTTTACGAGAATCAATGCTTGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
80846 AATGAGGCAAAGAAAAGATTTCC
453 AATAAGGCAAAGAAAAGATTTCC
* * * * * *
80869 AGGCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTACAATGCCTAATC-
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
80933 CTGAAATGAAAGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGAATGAACTTATACA-
66 C-GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-AT
* **** * * * * * *
80997 TTACAAAAATTGGGGGGGGGGGGAAGCTTTTCTTGCGAATCCAAAGCATCATTATCATGTATCCC
129 TTACAAAAATT--GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCT
* * *
81062 TAT---TAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGAGTATT-ATG
192 TATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATG
* * *
81123 TTTGTCTTATTTAAGAGACAAACTTGGATTCTATTAATAACGGTGGAAAGAAAGGCTTCTCTTGC
257 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * * *
81188 GAGACCGAAGCATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGATCTCAATCTTGAA
322 GACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAA
*
81253 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGG
386 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
81318 AAAATAAGGCAAAGAAAAGATTTCC
451 AAAATAAGGCAAAGAAAAGATTTCC
* * *
81343 ATGCAAAAGAAAACCATCAATATCATGTAACCTAATGAGGAAAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* ** *
81408 CGAAATGAATGAAGATCTTTACTAGAATTTATGTCTGTCTCATTTGAGGCACGAACTTAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
81473 AC-CAAATTGGTGGGAAAAATA--GTTTCTTTC-AAAGCCAAATCATCAATATCCTGTATCTTTA
131 ACAAAAATTGGTGGGAAAAA-AGCGTTTCTTGCGAAA-CCAAATCATCAATATCCTGTATCCTTA
* * * * * *
81534 TGAGAAGACTATTTTTACGGTGGCTAATCTAGAAAAGAATGTAGATTAGTATGAATATTCACGTT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* *
81599 TGTCTTATTTAAGAGACAAACCTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * *
81664 CGCCAAGGCAGT-AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATAAAA
324 CACCAAAGCA-TCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
81728 AGAATGCAGACTTTTACAAGAATCGATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
**
81793 AAATAAGGCAAAGAAAAGATTTTA
452 AAATAAGGCAAAGAAAAGATTTCC
* * * * * * * *
81817 ATGCAAAAGAAAACTATCAATATCATATATCCTGATGAGGAGATTGTATTTATAGCGCTTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
81882 CGGAATGAAAGAAGATCCTTACTAGAATTCC-TGTTTGTCTCA-TT--GGCACGAACGTAAAATT
66 CGAAATGAATGAAGATCCTTACTAGAA-TCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
* * *
81943 TACAAAAAATGGTGGGAAAAAAGCATTTCTTGCAAAACCAAATCATCAATATCCTGTATCCTTAT
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
** * * * *
82008 GAGAAGGTTATTTTTACAGTGCCTAATCCAGAAAAGATTATGGATTAGTATGAGTATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * *
82073 GTCTTATTTAACAGACAAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTTCTCTTGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* *
82138 ACCAAAGCATCAATGTCATGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCTCAATCTTGAAAAG
325 ACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* *
82203 AATGGAGACTTTTACGAGAATCGATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
82268 ATAAGGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * * *
82290 TTGCAAAAGAAAACCATCAATATCTTTTAACCTATTAAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
82355 CGAAATGAATGCAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
82420 ACTAAAATTAGG-GGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTTTATCCTTAT
131 ACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * *
82484 GAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAGAATG-GGAATTAGTATGAGTATTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* * * *
82548 TGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGG-CGAAAAAAAAGCTTCTCTTGC-A
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * *
82611 GCACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGAT-CGAATCTT-AGA
324 -CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGA-A
* *
82674 AAGAGTGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGT
386 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
*
82739 AAAATAAGGCAAAGAAAAGATTTTC
451 AAAATAAGGCAAAGAAAAGATTTCC
* *
82764 ATGCAAAAGAAAACCATCAATATCATTTATCTTAATGAGGAGAATCTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * * *
82829 GGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTAATTTTAGGAATGAACTTATACTTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * * * *
82894 AC---ATTTGG-GGCAAGAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATTTATCCCTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * *
82955 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATATGCATTAGCATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * *
83020 TCTTATTTAAGAGTCAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
83085 CCAAAGCATCAACGTCAT-TATCCTAATGAAGGCAATGTGGTTTTGGTTCCCAATCTT-AAAACG
326 CCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAA-G
* *
83148 AATGGAGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
*
83213 ATAACGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
** ** * ** * *
83235 ATGCAAAAGAAAACCATCAATATCATGCATTGTGACAAGGAGATTGTGTTTATTGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
83300 CGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTTAGGCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * **
83365 ACAGAAATTGATGGGAAAAAAGCGTTTCTTAC-ATAACCAAATCATCAATATCCTACATCCTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGA-AACCAAATCATCAATATCCTGTATCCTTAT
* * * *
83429 GAGAAGACTATGTTTATGGAGCCTAATCCTGAAAAGAATG-GGAATTAGTATGAGTGTTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* * ** *
83493 TGTCTTATTTAAGAGATAAACTTTGATTTTATCGTTAATGGTGGAAAGAAAAGCTTCTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * *
83558 CACCAAAGCATCAACGTCATGTATCCTAATGAAGGAAATGTGTTTTTGGTTCCTAATC-TCAAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAA
* * *
83622 CAAATGGAGACTTTTACAAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
388 -GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
83687 AAATAAGGCAAAGAAAAGATTTCC
452 AAATAAGGCAAAGAAAAGATTTCC
* * ** * *
83711 ATGCGAAAGAAAACCATCACTATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGGCTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * * *
83776 CCAAATGAATGAAGATCCCTGCAAGAATCCATGTTTGTCTCATTTGA-GCAATGAACTCATACTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGC-ACGAACTTAGAATT
* * * * * *
83840 TACACAAATTGGTGGGAAGAAAGCGTATCTCGCGAAACCAAAGCATCAATATCATGTATCCTTAT
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * * * *
83905 GTGAAGACTATGTTTTTC--TGTCTAATCCAGAAAAGAATGTAGATTAGTATGAGTATTCATATT
195 GAGAAGACTATG-TTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* * * *
83968 TGCCTTATTTAAGAGACAAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCAA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * *
84033 CACCAAAGCAACATTGCCATGTATCCTAATGAAGGGAATGTGTTTTTTGGTTTCCAATCTT-AAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTG-TTTTTGGTTCCCAATCTTGAAA
* *
84097 ATAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAAC-TT-A---T---G-
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
*
84153 ----CA---AAAG-AAA-A---CC
452 AAATAAGGCAAAGAAAAGATTTCC
* ** *** * * **** * *** ** *
84165 AT-CAATA-TCATTTATC-CTA--A-TGAGGAGAATG-TGCTTATAGTGCCTA-A-T-CATGAA-
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAAT-GTGTTTATAGTGCCT-AAT
* * *
84219 -ATG-AA-G---GAAGATCCTTGCTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGAAT
64 CACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAAT
* * * * * * *
84278 TTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGTGAAACCAAAGCATCGATATCATGTATCTTTA
129 TTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * *
84343 TGAGAAGACTGTGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGT
194 TGAGAAGACTATGTTTACGGTGCCTAATCC-AGAAAAGAATGTGGATTAGTATGAGTATTCATGT
* * * ** *
84407 TTGTCTTATTTAAGTGACAAACTTTGATTCCATCCATAGTGGTAGAAAGAAAAGCTTCTCTTGCG
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* *
84472 ACCCCAAAGCATCAATGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAA
323 ACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* *
84537 AGATTGGAGACTTTTACGAGACTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
*
84602 AAATAAGGCAAAGAAAAGATTTTC
452 AAATAAGGCAAAGAAAAGATTTCC
* * * * *
84626 ATGCAAAACAAAACCATAAATATTATTTATCCTAATGAGGAGAATATGTTTATAGTGTCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
84691 CGAAATGAATGAAGATCCTTAGTAGAATCCATGTTTGTCTCAATTGAGCCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * * * *
84756 ACAAAAAGTGATAGGAAAAAATCGTTTCTTGCGAAACCAAACCTTCAATATCATGTATCTTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * *
84821 AGAAGACTGTGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAGTATTCATGTTT
196 AGAAGACTATGTTTACGGTGCCTAATCC-AGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * *
84885 GTCTTATTTAAGAGACAAACTTCGATTCTATCAATAACAGTGGAAAGACAAGCTTTTCTTGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* *
84950 ACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAAC
325 ACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * *
85014 AATTGGAGACTTTTGCAAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTATGGAA
389 AA-TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
85079 AATAAGGCAAAGAAAAGATTTCC
453 AATAAGGCAAAGAAAAGATTTCC
* * * ** * *
85102 ATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGATTGTGTTTATAGTGCTTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
85167 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAAAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
85232 ACAGAAATTGATGGGCAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * * *
85297 TGAGGACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * *
85362 TCTTATTTAAGAGACAAACATTGATTTTATCATTAACGGTGG-AA-AAAAGCTTCTCTTACAACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
** * * * *
85425 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAAATGGTTTTGGATCCTAATCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
85490 GTGGAGACTTTTACGAGAATCAATGCATGTCTCAATTAAAGTACAAACTTTGATTTTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
85555 TAAGGCAAAGAAAAGATTTTC
455 TAAGGCAAAGAAAAGATTTCC
* * *
85576 ATCCAAAAGAAAACCATCAATATAATTTATCCTAATGAGGAGAATCTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * *
85641 TGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTATACTTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * *
85706 ACAAAAATTGGGGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATCTCATTTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* ** * * *
85771 AGAAGACTATGTTTATGGTGCCTAATCTGGAAAAGAATGTAGATTAGCATAAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * *
85836 TCTTATTTAAGAGAGAAACTTTGATTCTATCAATAACAGTGGAAAGACAAGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
85901 CCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAACA
326 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA-G
* *
85965 AATGGAGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
*
86030 ATAACGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* ** * ** * * *
86052 ATGCAAAAGAAAACCATCAATATCATGTATTGTGACAAGGATATTGTGTTTATAGTGCTTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
86117 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* *
86182 ACAGAAATTGATGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * * * *
86247 TGAGGACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * * *
86312 TCTTATTTAAGAGACAAACATTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTACAACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * * *
86377 CCAAAGCATCAATGTCATGTATCCTAATGAAGGAAAAGTGTTTTTGGATCCTAATCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * * * * *
86442 GTGAAGACTTTTATGAGAATCAATGCATGTCTTAATTAAAATAAAAAATTTGATTTTAAGG-AAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
86506 TGAGGCAAAGAAAAGATTTCC
455 TAAGGCAAAGAAAAGATTTCC
* * * * * *
86527 AGGCAAAAGAAAACAATTAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAATGCCTAATCT
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
86592 CGAAATGAAAGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGAATGAACTTATACA-T
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-ATT
* **** * * * * *
86656 TACAAAAATTGGGGGGGGGGGAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATGTATCCCTA
130 TACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * *
86721 T---TAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGAGTATT-ATGTT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* *
86782 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCATGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * *
86847 CGCCAAAGCA-CTAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTCTCAATCTTGAAA
324 CACCAAAGCATC-AATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
*
86911 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
86976 AAATAAGGCAAAGAAAAGATTTCC
452 AAATAAGGCAAAGAAAAGATTTCC
* * * *
87000 ATGAAAAAGAAAACCATCAATATCATGTAACCTAATGAGGAAAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* ** *
87065 CGAAATGAATGAAGATCTTTACTAGAATTTATGTCTGTCTCATTTGAGGCACGAACTTAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
87130 AC-CAAATTGGTGGGAAAAATA--GTTTCTTTC-AAAGCCAAATCATCAATATCCTGTATCTTTA
131 ACAAAAATTGGTGGGAAAAA-AGCGTTTCTTGCGAAA-CCAAATCATCAATATCCTGTATCCTTA
* * * * * * *
87191 TGAGAAGACTATTTTTACGGTGGCTAATCTAGAAAAGATTGTAGATTAGTATGAATATTCACGTT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* *
87256 TGTCTTATTTAAGAGACAAACCTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * *
87321 CGCCAAGGCAGT-AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAA
324 CACCAAAGCA-TCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* ** *
87385 AGAATGGAGACTTTTACAAGAATTGATGCATGTCTCATTTAAAGTAGAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
**
87450 AAATAAGGCAAAGAAAAGATTTTA
452 AAATAAGGCAAAGAAAAGATTTCC
* * * * * * * * *
87474 ATGCAAAAGAAAACTATCAATATCATATATCCTGATGAGGATATTGTATTTATTGTGCTTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
87539 CGGAATGAAAGAAGATCCTTACTAGAATTCTTGTTTGTCTCA-TT--GGCATGAACTTAAAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
87601 ACAAAAATTGGTGGGAAAAAAGCATTTCTTGCAAAACCAAATCATCAATATCCTATATCCTTTTG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
** * * * * *
87666 AGAAGGTTATTTTTACAGTGCCTAATCTAGAAAAGATTATGGATTAGTATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * *
87731 TCTTATTTAACAGACAAACTTTGATTCTATCAGTAATGGTGGAAAGACAAGCTTCTATTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
87796 CCAAAGCATCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATCTTAAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * *
87861 ATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAAATTTGATTTTAAGGGAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
* *
87926 TAAGGCGAAGAAAAGACTTCC
455 TAAGGCAAAGAAAAGATTTCC
* * *
87947 ACGCAAAAGAAAACCATCAATATCATATATCCTGAA-GAGGAGAATGTATTTATAGTGCCTAATC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * **
88011 CCGAAATGAATGAAGATCCTTACTAGAATTCGTGTTTGTCTCATTTGAGGTGCGAACTTAGAATT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
* * * * * *
88076 TACAAAAATTGGTGGG-AAAAATCTGCTTCTAGCTAAACCAAATCATCAATATCCAGTATCCCTA
130 TACAAAAATTGGTGGGAAAAAAGC-GTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * * * *
88140 TGAGAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAATG-GGTTTTAGCATGAGTATTCATGT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGT
** * * *
88204 TTGTCTTATTTAAGAGATGAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGGG
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* * *
88269 ACACCAAAGCATCAATGTCATGTATCCTAATGCAGAGAATGTGTTTTTGGATCCTAATCTTGAAA
323 ACACCAAAGCATCAATGTCATGTATCCTAATGAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAA
* *
88334 AGATTGGAGACTTTTACGAGATTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
*
88399 AAATAAGGCAAACAAAAGATTTCC
452 AAATAAGGCAAAGAAAAGATTTCC
* *
88423 ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
*
88488 TGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCA-TT--GGCACGAACTTAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
88550 AC-AAAATTGGTGGGAAAAAAGCATTTCTTGCAAAACCAAATCTTCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * ** * * * *
88614 AGAGGACTATTTTTACGGCGCCTAATTTATAAAAGATTATGGATTAGTATGACTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * *
88679 TCTTATTTAAGAGACAAACTTTGACTCTATCAATAACAGTGGAAAGACAAGCTTCTCTTGCGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
*
88744 CCAAAGCATCAATGTCATGTATCCTAATGATAGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGA-AGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
*
88809 TTGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
88874 TAAGGCAAAGAAAAGATTTTC
455 TAAGGCAAAGAAAAGATTTCC
* * * * *
88895 ATGCAAAAGAAAACCTTAAATATCATTTGTCCTAATGAGAAGAATATGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
88960 CGAAATGAATGAAGATCCTTAGTAGAATCCTTGTTTGTCTCATTTGAGCCACGAACATAAAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * *
89025 ACAGAAATTGATGGGAAAAAAGCGTTTCTTGTGAAACCAAAACATCAATATCTTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * ** * * *
89090 AGAAGACTAAGTTTATGGTGCCTAATTCTTAAAACAATGGGGATTAGTATGAGTATTCATGTTTA
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * * *
89155 TCTTATTTAAGAGATAAACTTTGATTTTATCATTAACGGTGGAAAGAACAGCTTCTCTTACAACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
89220 CCAAAGCATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTGGTTCCCAGTCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
89285 ATGGAGACTTTTATGAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
89350 TAAGGCAAAGAAAAGATTTCC
455 TAAGGCAAAGAAAAGATTTCC
* *
89371 ATGCAAAAGAAAACCATTAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
89436 TGAAATGAATGAAGATCCTTACTAGAATCCATGTCTATCTCATTTGAGGCACGGACTTAAAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
89501 ACAAACATTGGTGGGAAAAAAGAGTTTCTTGC-AAAGCCAAATCATCAATATCCTGTATCTTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAA-CCAAATCATCAATATCCTGTATCCTTAT
* * * * *
89565 GAGAAGACTATTTTTATGGTGCCTAATCCAGAAAAGAATATGGACTAGTATGAATATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * *
89630 GTC-----T---A-A-TAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTTCTCTTACGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
*
89685 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTCAATCTTGAAAAG
325 ACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
*
89750 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
89815 ATAAGGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * * *
89837 TTGCAAAAGAAAACCATCAATATCTTTTAACCTATTAAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
89902 CGAAATGAATGCAGATCCTTACTAGAATCCATGTTTGTCTTATTCGAGGCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* *
89967 ACAAAAATTGGTGGGAAAAAAGCATTTCTTGCAAAACCAAATCATCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* ** * * * * *
90032 AGAAGACTATTTTTGTGGTGCCTCATCTATAAAAGATTATGGATTAGTATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* *
90097 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
90162 CCAAAGCATCAATGTCATGTCTCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * *
90227 TTGGAGACTTTAACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTAATTTTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
90292 TAAGGCAAAGAAAAGATTTTC
455 TAAGGCAAAGAAAAGATTTCC
* * *
90313 ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGTCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
90378 CGAAATGAATGAAGATCCTTAGTAGAATCCATGTTTGTCTCAATTGAGCCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
90443 ACAAAAATTGATAGGAAAAAATCGTTTCTTGCGAAACCAAATCATCAATATCATGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
** * * *
90508 AGAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAATATTCATGTTAG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * * * *
90573 TCTTATTTAGGAGATAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTACGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * *
90638 CCAAAGCATCAATGTCATGTATCCTAATGAAGATAATGTGTTTTTAGTTCCCAATCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAAG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
*
90703 ATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
90768 TAATGCAAAGAAAAGATTTCC
455 TAAGGCAAAGAAAAGATTTCC
* * * * *
90789 AGGCAAAAGAAAACCATCAATATCATGTATCCAAATGAGGAGAATGTGTTTATAGTGCCCAATTA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
90854 TGAAATAAATGAAG-TGCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTAGAATT
66 CGAAATGAATGAAGAT-CCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
* * * * * *
90918 TACAAAAATTGTTTGGAAAAAAGAGTTTCTTGC-AAAGCCAAATTAGCAATATCCTGTATCTTTA
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAA-CCAAATCATCAATATCCTGTATCCTTA
* * *
90982 TGAGAAGACTATTTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTGGTATGAATATTCATGTT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* * * *
91047 TGTCTTAATTAAGAGACAAATTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * *
91112 CACCAAAGCATCAATGTCATGTATCCCAATGAAAGGAATGTGTTTTTGGTTCTCAAGCTTGAAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
91177 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
* *
91242 AATAAGGTAAAGAAAAGATTTTC
453 AATAAGGCAAAGAAAAGATTTCC
* * *
91265 ACGCAAAAGAAAACCATCAATATCATTTATCCTATTAAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
91330 CGAAATGAATGCAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * *
91395 ACAAAAATTAGG-GGGAAAAAAGCTTTTCCTACGAAACCAAATCATCAATAACCTTTATCCTAAT
131 ACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* *
91459 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGAATTAGTATGAGTATTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* * ** * * *
91523 TGTCTTATTTAAGAGACAAACTTT-ATTTTATCATTATTGGTGGAAAAAAAAGCTTTTCTTGCAA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * * * * *
91587 CACCAAAGCCTCAATGTCATTTATCCTAATGAAGGGAAAGTGGTTTTGGATCCTAATCTTGGAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* *
91652 GAGTGGAGACTTTTACGAGAATCAATGCATGTCTCAATTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
91717 AATAAGGCAAAGAAAAGATTTTC
453 AATAAGGCAAAGAAAAGATTTCC
* * * * * *
91740 ATCCAAAAAAAAACCATCAATATAATTTATCCTGATGAGGAGAATCTGTTTATAGTGCCCAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
91805 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTATACTTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * *
91870 ACAAAAATTAGG-GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATCTCATTTATCCTTAT
131 ACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * * * *
91934 GAGAAGACTATGTTTATGGTGCCTAATCCGGAAAAGAATGTAGATTAGCATAAGTATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * *
91999 GTCTTATTTAAGAGAGAAACTTTGATTCTATCAATAACAGTGGAAAGACAAGCTTTTCTTGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* *
92064 ACCAATGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAAC
325 ACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA-
* * *
92128 AAATGGAGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
92193 AATAACGCAAAGAAAAGATTTCC
453 AATAAGGCAAAGAAAAGATTTCC
* * * ** * *
92216 ATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGATTGTGTTTATAGTGCTTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
92281 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
92346 ACAGAAATTGATGGGAAAAAAGTGTTTCTTGCGAAACCAAATCATCAATATCCTGTATTCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * * *
92411 TGAGGACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * * *
92476 TCTTATTTAAGAGACAAACATTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTACAACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * * * *
92541 CCAAAGCATCAATGTCATGTAGCCTAATGAAGGAAAAGTGTTTTTGGATCCTAATCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * * * *
92606 GTGAAGACTTTTATGAGAATCAATGCATGTCTTAATTAAAATA-AATAATTTGATTTTAAGG-AA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAA-ACTTTGATTTTAAGGAAA
*
92669 ATGAGGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * * * *
92691 AGGCAAAAGAAAACAATTAATATCATTTATCCTAATGAGGAGAAAGTGTTTATAATGCCTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
92756 CGAAATGAAAGAAGATCCTTACTAGAATCAATGTCTGTCTCATTTGAGGAATGAACTTATACA-T
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-ATT
* **** * * * * *
92820 TACAAAAATTGGGGGGGGGGGAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATGTATCCCTA
130 TACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * *
92885 T---TAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGAGTATT-ATGTT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* *
92946 TGTCTTATTTAAGAGACAAACTTTGATTCTATTAATAACGGTGGAAAGAAAGGCTTCTCTTGCGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * *
93011 GACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTCTCAATCTTGAAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
93076 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGG-A
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
93140 AATAAGACAAAGAAAAGATTT-C
453 AATAAGGCAAAGAAAAGATTTCC
* * * ** * * *
93162 ATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGATTGTGTATATTGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
93227 CGAAATGAATGAAGATTCTTACTAGAATCTATGTTTGTCTCATTTGAGGGACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
93292 ATAGAAATTGATGGGAAAAAAGCGTTTCTTGC-ATAACCAAATCATCAATATCCTGTATCCTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGA-AACCAAATCATCAATATCCTGTATCCTTAT
* ** * * *
93356 GAGAAGACTATGTTTATGAAGCGTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * *
93421 GTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAAGCTTCTCTTGCAA
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGG-AAAGAAAAGCTTCTCTTGCGA
* * * * *
93486 CACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * * * *
93551 GAGTGGAGACCTTTACGAGAATCAATGCTTGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
93616 AATGAGGCAAAGAAAAGATTTCC
453 AATAAGGCAAAGAAAAGATTTCC
* * * * * * * * *
93639 AGGCAAAAAAAAACCATTAATATCATTTATCCTAAAGAGGTGAAAGAGTTTATAATGCCTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * *
93704 CGAAATGAAAGAAGATCGTTACTAGAATCCATATCTGTCTCATTTGAGGAATGAACTTATACA-T
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-ATT
* *** * * * * *
93768 TACAAAAATTGGGAGGGGGGGAAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATGTATCCCT
130 TACAAAAATT-GG-TGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTT
* * * *
93833 AT---TAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGACTATT-ATGT
193 ATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGT
* * *
93894 TTGTCTTATTTAAGAGACAAACTTTGATTCTATTAATAACGGTGGAAAGAAAGGCTTTTCTTGCG
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* * *
93959 AGACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTCTCAATCTTGAAA
323 ACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* *
94024 AGAATGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
94089 AAATAAGGCAAAGAAAAGATTTCC
452 AAATAAGGCAAAGAAAAGATTTCC
* * *
94113 ACGCAAAAGAAAACCATCAATATCATTTATCCTATTAAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
94178 CGAAATGAATGCAGATCCTTACTAGAATCCATGTTTTTCTCATTTGAGGCATGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
** * * * *
94243 ACAAAAATTAGG-GGGAAAAAATAGTTTCTTCCGAAGCCAAATCATCAATATCCTCTATCTTTAT
131 ACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * * * * *
94307 GAGAAGACTATTTTTACGGTGGCTAATCTAGAAAAGAATGTAGATTAGTATGAATATTCACGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * *
94372 GTCTTATTTAAGAGACAAACCTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCATGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* * *
94437 GCCAAAGCA-CTAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTCTCAATCTTGAAAA
325 ACCAAAGCATC-AATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
94501 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
94566 AATAAGGCAAAGACAAGATTTCC
453 AATAAGGCAAAGAAAAGATTTCC
* * *
94589 ATGCAAAAGAAAACCATCAATATCATGTAAT-CTAATGAGGAAAATGTGTTTATAGAGCCTAATC
1 ATGCAAAAGAAAACCATCAATATCAT-TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* ** *
94653 ATGAAATGAATGAAGATCCTTACTAGAATTTATGTCTGTCTCATTTGAGGCACGAACTTAGAATT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
* ** * * *
94718 TAC-CAAATTGGTGGGAAAAAATAGTTTCTTCCGAAGCCAAATCATCAATATCCTGTATCTTTAT
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * * * * *
94782 GAGAAGACTATTTTTACGGTGGCTAATCTAGAAAAGAATGTAGATTAGTATGAATATTCACGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* *
94847 GTCTTATTTAAGAGACAAACCTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* * * * *
94912 GCCAAGGCA-CTAATGTCATGCATCCTAGTGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAA
325 ACCAAAGCATC-AATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* *
94976 GAATGGAGACTTTTACAAGAATCGATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
**
95041 AATAAGGCAAAGAAAAGATTTTA
453 AATAAGGCAAAGAAAAGATTTCC
* * * * * * * *
95064 ATGCAAAAGAAAACTATCAATATCATATATCCTGATAAGGAGATTGTATTTATAGTGCTTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
95129 CGGAATGAAAGAAGATCCTTACTAGAATTCTTGTTTGTCTCA-TT--GGCACGAACTTAAAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
95191 ACAAAAATTGGTGGGAAAAAAGCATTTCTTGCAAAACCAAATCATCAATATCGTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
** * * * *
95256 AGAAGGTTATTTTTACAGTGCCTAATCCAGAAAAGATTATGGATTAGTATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* *
95321 TCTTATTTAACAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
95386 CCAAAGCATCAATGTCATGTATCCTAATGAAAAGAATGTGTTTTTGGTTCCCAATCTTAAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * *
95451 ATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAAATTTGATTTTAAGGGAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
* *
95516 TAAGGCGAAGAAAAGACTTCC
455 TAAGGCAAAGAAAAGATTTCC
* * * **
95537 ACGCAAAAGAAAACCATCAATATCATATATCCTGAA-GGGGAGAATGTACTTATAGTGCCTAATC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATC
* * *
95601 CCGAAATGAATGAAGATCCTTACTAGAATTCATGTTTATCTCATTTGAGGCACGAACTTAGAATT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
*** * * * *
95666 TACAAAAATTGGTGGGAAAAATTTGCTTCTAGCTAAACCAAATCATCAATATCCAGTATCCTTAT
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * * * * * *
95731 TAGAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAATG-GGTTTTAGCATGAGTTTTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* ** * * *
95795 TGACTTATTTAAGAGATGAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGGGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * *
95860 CACCAAAGCATCAATGTCATGTATCCTAATGCAAAGAATGTGTTTTTGGATCCTAATCTTGAAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * *
95925 GATTGGAGACTTTTACTAGATTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
95990 AATAAGGCAAACAAAAGATTTCC
453 AATAAGGCAAAGAAAAGATTTCC
* **
96013 ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGCACCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
96078 TGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCA-TT--GGCACGAACTTAAAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* *
96140 ACAAAAATTGGTGGGAAAAAAGCATTTCTTGCAAAACCAAATCATCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * *
96205 AGAAGACTATTTTTACGGTGCCTAATCTATAAAAGATTATGGATTAGTATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * *
96270 TCGTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * *
96335 CCAAAGCATCAATGCCATGTCTCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * *
96400 TTGGAGACTTTAACGAGAATCATTGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
96465 TAAGGCAAAGAAAAGATTTTC
455 TAAGGCAAAGAAAAGATTTCC
* * * * *
96486 ATGCAAAAGAAAACCTTAAATATCATTTGTCCTAATGAGAAGAATATGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
96551 CGAAATGAATGAAGATCCTTAGTAGAATCCATGTTTGTCTCATTTGAGCCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
96616 ACAGAAATTGATGGGAAAAAAGCGTTTCTTGCGAAACCAAAACATCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * * *
96681 AGAAGACTAAGTTTATGGTGCCTAATTCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTA
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * *
96746 TCTTATTTAAGAGATAAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTACAACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
*
96811 CCAAAGCATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTGGTTCCCAATCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * *
96876 ATGGAGACTTTTATGAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
96941 TAAGGCAAAGAAAAGATTTCC
455 TAAGGCAAAGAAAAGATTTCC
* * *
96962 ATGCAAAAGAAAACGATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATAGTCCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
97027 TGAAATGAATGAAGATCCTTACTAGAATCCATGTCTATCTCATTTGAGGCACGAACTTAAAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
97092 ACAAAAATTGGTGGGAAAAAAGAGTTTCTTGCGAAGCCAAATCATCAATATCCTGTATCTTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * *
97157 AGAAGACTATTTTTATGGTGCCTAATCTAGAAAAGAATGTGGACTAGTATGAATATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
*
97222 TCTTA--T--------AACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
*
97277 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
97342 ATGGAGACTTTTACGAGAATCGATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
97407 TAAGGCAAAGAAAAGATTTCC
455 TAAGGCAAAGAAAAGATTTCC
* * * * *
97428 TTGCAAAAGAAAACCATCAATATCTTTTAACCTATTAAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
97493 CGAAATGAATGCAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* *
97558 ACAAAAATTAGG-GGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTTTATCCTTAT
131 ACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
** * * * *
97622 GAGAAGACTATGTTTATTGTGCCTAATCCTGAAAAAAATG-GGAATTAGTTTGAATATTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* * * * *
97686 TGTCTTATTTAAGAGGCAAACTTTGATTTTATCATTAACGGTGAAAAAAAAAGCTTCTCTTGC-A
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * * *
97750 GCACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGAT-CGAATCTTGGAA
324 -CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
97814 AGAGTAGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGTA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
* *
97879 AAATAAGGCAAAGAAAGGATTTTC
452 AAATAAGGCAAAGAAAAGATTTCC
* *
97903 ATGCAAAAGAAAACCATCAATATCATTTATCTTAATGAGGAGAATCTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * * *
97968 CGAAATGAATGAAGATCTTTACTAGAATCCATGTCTGTCTAATTTTAGGAATGAACTTATACTTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* ** * * * *
98033 ACAAAAATTTGG-GGCAGGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCCTAT
131 ACAAAAA-TTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * * * * *
98097 GAGAAGACTACGTTTACGGTGCCTAATCTATAAAAGAATATGCATTAGCATGAGTATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * *
98162 GTCTTATTTAAGAGTCAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTTTCTTGCGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* * * * *
98227 ATCAAAGCATGAACGTCATGTATTCTAATGAAGGCAATGTGGTTTTGGTTCCCAATCTT-AAAAC
325 ACCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAA-
* *
98291 GAATGGAGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
98356 AATAAGGCAAAGAAAAGATTTCC
453 AATAAGGCAAAGAAAAGATTTCC
* * * ** * * *
98379 ATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGATTGTGTTTCTTGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* ** *
98444 CGAAATGAATGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGCTTGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
98509 ACAGAAATTGATGGGAAAAAAGCGTTTCTTAC-ATAACCAAATCATCAATATCCTATATCCTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGA-AACCAAATCATCAATATCCTGTATCCTTAT
* * * * *
98573 GAGAAGACTATGTTTATGGAGCCCT-ATCCTGAAAAGAATG-GGAATTAGTTTGAGTGTTCATGT
195 GAGAAGACTATGTTTACGGTG-CCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGT
* ** * *
98636 TTGTCTTATTTAAGAGACAAACTTTGATTTTATCGTTAATGGTGGAATGAAAAGCTTCTCTTGCG
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* * *
98701 ACACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATC-TCAAA
323 ACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
98765 ACGAATGGAGACTTTTGCAAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGG
387 A-GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
*
98830 AAAATAAGGCAAAGAAAAGTTTTCC
451 AAAATAAGGCAAAGAAAAGATTTCC
* ** *
98855 ATGCGAAAGAAAACCATCAATATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGCCTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * *
98920 CCAAATGAATGAAGATCCCTGC-AGGAATCCATGTTTGTCTCATTTGA-GCAATGAACTCATACT
66 CGAAATGAATGAAGATCCTTACTA-GAATCCATGTTTGTCTCATTTGAGGC-ACGAACTTAGAAT
* * * * * *
98983 TTACACAAATTGGTGGGAAGAAAGCGTATCTCGCGAAACCAAAGCATCAATATCATGTATCCTTA
129 TTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * * * *
99048 TGAGAAGACTATGTTATTC--TGTCTAATCTAGAAAAGAATGTAGATTAGTATGAGTATTCATAT
194 TGAGAAGACTATGTT-TACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGT
* * * * *
99111 TTGCCTTATTTAAAAGACAAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCA
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* * * *
99176 ACACCAAAGCAACATTGCCATGTATCCTAATGAAGGGAATGTGTTTTTTGGTTTCCAATCTT-AA
323 ACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTG-TTTTTGGTTCCCAATCTTGAA
* * *** *
99240 AAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCGTTTAAAGTACAAAC-TT-ATGCAAAAG
386 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
** * * **
99303 AAAACCA-TC--A-ATATCATTT--
451 AAAATAAGGCAAAGAAAAGATTTCC
* * * ** * * *** *
99322 ATCCTAATG---AGGA-GAATGTGC--TTA---TAAT--GCCTAA------T-CA-TG---AA--
1 ATGCAAAAGAAAACCATCAATAT-CATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * *
99363 ATG-AA-G---GAAGATCCTTGCTAGAATCCATGTTTGTCTCATTTGATGCACGAACTTAGAATT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
* * * * *
99423 TACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTTAT
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * *
99488 GAGAAGACCATGTTTATGGTGCCTAATCCTA-AAAAGAATAG-GGATTAGTATGAGTATTCATAT
195 GAGAAGACTATGTTTACGGTGCCTAATCC-AGAAAAGAAT-GTGGATTAGTATGAGTATTCATGT
* * * * *
99551 TTGTCTTATTTAAGTGACAAACTTTGATTCCATCCATAATGGTAGAAAGAAAAGCTTCTCTTGCG
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* *
99616 ACCCCAAAGCATCAATGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAA
323 ACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
99681 AGATTGGAGACTTTTACGAGACTCAATGCGTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
*
99746 AAATAAGGCAAAGAAAAGATTTTC
452 AAATAAGGCAAAGAAAAGATTTCC
* * *
99770 ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGTCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
99835 CGAAATGATTGAATATCCTTAGTAGAATCCATGTTTGTCTCATTTGAGCCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
** * *
99900 ACAAAAATTGACGGGAAAAAATCGTTTCTTGCAAAACCAAATCATCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
** * *
99965 AGAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTAG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * ** * *
100030 TCTTATTTAGGAGATAAACTTTGATTTTATCTTTAACGGTGGAAAGAAAAGCTTCTCTTACGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
100095 CCAAAGCATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTAGTTCCCAATCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* *
100160 AAGGAGACTTTTACGAGAATCAATGCATGTCTCATTCAAAGTACAAACTTTGATTGTAAGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA-T-T--------
*
100225 TAATGCAAAGAAAAGATTTCCAGGAAAATAATGCAAAGAAAAGATTTCC
445 T--T-----------A-----AGGAAAATAAGGCAAAGAAAAGATTTCC
* * * * * *
100274 AGGCAAAAGAAAACCATCAATATCATGTATCCGAATAAGGAGAATGTGTTTATAGTGCCCAATTA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
*
100339 CGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * *
100404 ACAAAAATTGTTGGAAAAAAAGAGTTTCTTGC-AAAGCCAAATCAGCAAGATCCTGTATCTTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAA-CCAAATCATCAATATCCTGTATCCTTAT
* * *
100468 GAGAAGACTATTTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTGGTATGAATATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * * *
100533 GTCTTAATTAAGAGACAAATTTTGATTCGATCAATAACGG-GGAAAGACAAGCTTCTCTTGTGAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* * * *
100597 ACCAAAGCATCAATGTCAAGTATCCCAATGAAAGGAATGTGTTTTTGGTTCTCAAGCTTGAAAAG
325 ACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * *
100662 AATGGAGACATTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTAAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
100727 ATAAGGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * * *
100749 ACGTAAAAGAAAACCATCAATATCATTTATCCTATTAAGGAGAATATGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
100814 CGAAATGAATGCAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * * *
100879 ACAAAAATTAGG-GGGAAAAAAGCATTTCCTACGAAACCAAATCATCAATAACCTTTATCCTAAC
131 ACAAAAATT-GGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * *
100943 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GAAATTAGTATGAGTATTCATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTG-GATTAGTATGAGTATTCATGTT
* * * * * *
101007 TGTCTTATTTAAGAGACAAACTTT-ATTTTATCATTATCGGTGGAAAAAAAAGCTTTTCTTGCAA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * * * *
101071 CACCAAAGCCTCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA
*
101136 GAGTGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
101201 AATAAGGCAAAGAAAAGATTTTC
453 AATAAGGCAAAGAAAAGATTTCC
*
101224 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATCTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
101289 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTATACTTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * *
101354 ACAAAAATTGGGGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * *
101419 AGAAGACTATTTTTATGGTGCCTAATCCGGAAAAGAATGTGGATTAGCATAAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * *
101484 TCTTATTTAAGAGACAAACTTTGATTCTATCAGTAA--GTGGAAAGACAAGCTTTTCTTGCGATA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* *
101547 CCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAACA
326 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA-G
* *
101611 AATGGAGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
101676 ATAAGGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * ** * *
101698 ATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGATTGTGTTTATAGTGCTTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
101763 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
101828 ACAGAAATTGATGGGAAAAAAGCGTTTCTTGCGAAACTAAATCATCAATATCCTGTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * * *
101893 TGAGGACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * * *
101958 TCTTATTTAAGAGACAAACATTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTACAACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* ** * * *
102023 CCAAAGCATCAATGTCATTTATCCTAATGAAGGAAAACTGTTTTTGGATCCTAATCTTGGAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAAGG-AATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * * * * * *
102088 GTGAAGACTTTTATGAGAATCAAGGCATGTCTTAATTAAAATAAAAAATTTGATTTTAAGG-AAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
102152 TGAGGCAAAGAAAAGATTTCC
455 TAAGGCAAAGAAAAGATTTCC
* * * * * * *
102173 AGGCAAAAGAAAACAATTAATATCTTTTATCCTAATGAGGAGAAAGTGTTTATAATGCCTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * ** * *
102238 CGAAATGAAAGAAGATCCTTACTAGAATCCATGTCTGTCTTATTTGAGAAATGAACTTATACA-T
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-ATT
* * * * *
102302 TACAAAAATTGG-GGCG-AAAAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATGTATCCCTA
130 TACAAAAATTGGTGG-GAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * * *
102365 TAAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGAGTATTTATGTT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTT
* * * * *
102430 TATCATATTTAAGAGACAAACTTTGATTCTATTAATAACGGTGGAAAGAAAGGCTTCTCTTGAGA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * *
102495 GACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTCTCAATCTTGAAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * *
102560 GAATGGAGACTTTTATGTGAATCAATGCATGTCTCAATTAAAATACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
102625 AATAAGACAAAGAAAAGATTT-C
453 AATAAGGCAAAGAAAAGATTTCC
* * * ** * *
102647 ATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGATTGTGTTTATTGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
102712 CGAAATGAATGAAGATTCTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
102777 ATAGAAATTGATGGGAAAAAAGCGTTTCTTGC-ATAACCAAATCATCAATATCCTGTATCCTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGA-AACCAAATCATCAATATCCTGTATCCTTAT
* * * * *
102841 GAGAAGACTATGTTTATGGAGCGTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * *
102906 GTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCAAC
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* ** * * *
102971 ACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAACTGTTTTTGGATCCTAATCTTGGAAAG
325 ACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
** * * * * *
103036 AGCGGAGACCTTTACGAGAATCAATGCTTGTCTCAATTAAAATGA-AAACTTTGATTTTAGGGAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGT-ACAAACTTTGATTTTAAGGAA
* *
103100 AATGAGGCAAAGAAAAGATTTCA
453 AATAAGGCAAAGAAAAGATTTCC
* * * * * * *
103123 AGGCAAAAGAAAACCATTAATACCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
103188 CGAAATGAAAGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGAATGAACTTATACA-T
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA-ATT
* * * * *
103252 TACAAAAATTGGGGGGGGGGGAGGGAAAAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATGT
130 TACAAAAATT-----GGTGGGA---AAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGT
* * * *
103317 ATCCCTAT---TAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGAGTAT
187 ATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTAT
* * *
103379 T-ATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATTAATAACGGTGGAAAGAAAGGCTTCT
252 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCT
* * **
103443 CTTGCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTTTCAATC
317 CTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTGTTTTTGGTTCCCAATC
103508 TTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTT-AAGATACAAACTTTGATT
381 TTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAG-TACAAACTTTGATT
*
103572 TTAAGGAAAATAAGGCAAAGAAAAGATTTTC
445 TTAAGGAAAATAAGGCAAAGAAAAGATTTCC
* *
103603 ATGTAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATCTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
103668 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTATACTTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
103733 ACAAAAATTGG-GGGGAAAAAGCGTTTCTTGCG-AACCTAAAGCATCAATA-CATTTATCCTTAT
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACC-AAATCATCAATATCCTGTATCCTTAT
** * * * * *
103795 GAGAAGACTATGTTTATAGAGCGTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCGTGTTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTT
* * * *
103860 GTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAAGCTTCTCTTGCAA
260 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGG-AAAGAAAAGCTTCTCTTGCGA
* * * * *
103925 CACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * * * *
103990 GAGTGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
104055 AATGAA-GCAAAGAAAAGATTTCC
453 AAT-AAGGCAAAGAAAAGATTTCC
* * * * * *
104078 AGGCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCC
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
104143 CGAAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACAAACATAGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * *
104208 ACAAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
*
104273 AGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATG-GGAATTAGTATGAGTATTCATGTT
196 AGAAGACTATGTTTACGGTGCCTAATCC-AGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* * * * * *
104336 TGTCTTCTTTAAGAGACAAACTTTGATTTTATCATTATCGGTGGAAAAAAAAGCTTCTCTTGCAA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
* * * * * *
104401 CACCAAAGCATCAATGTCATTTATCCTAATAAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAA
324 CACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * ** *
104466 GAGTGGAAACTTTTACGAGAATCAGGGCATGTCTCAATTAAAGTACAAACTTTGATTTTAAGGAA
388 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
104531 AATAAGGCAAAGAAAAGATTTTC
453 AATAAGGCAAAGAAAAGATTTCC
* *
104554 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATCTGTTTATAGTACCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
** * * * * * *
104619 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCAAATATAAGGAATGAACTTATACTTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
104684 ACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * *
104749 AGAAGACTATGTTTATGGTGCCTAATCCAGAAAAAAATGTGGATTAGCATAAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * *
104814 TCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * *
104879 CCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAGCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * *
104944 ATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAAA
390 ATGGAGACTTTTACGAGAATCAATGCA-TGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
* *
105009 ATGAGGCAAAAAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * * *
105031 -TGGCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAGTC
1 AT-GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * *
105095 CCGAAAAGAAAGAAGATCCTTACTAGAATCCATGTTTTTCGT-ATTTGAGGCACGAACATAGAAT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGAAT
* * * * *
105159 TTACAAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTA
129 TTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * * *
105224 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACG-GGAATTAGTGTGAGTATTCATGT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGT
* * * * *
105288 TTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGAGGAAAAAAAAGCTTCTCTTGCA
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* * * * *
105353 ACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAA
323 ACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
105418 AGAGTGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
*
105483 AAATAAGGCAAAGAAAAGATTTTC
452 AAATAAGGCAAAGAAAAGATTTCC
105507 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
105572 CGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTGGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
105637 ACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * *
105702 AGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGCATAAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * *
105767 TCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * *
105832 CCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAGCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * *
105897 ATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAAA
390 ATGGAGACTTTTACGAGAATCAATGCA-TGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
*
105962 ATGAGGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * * *
105984 -TGGCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAGTC
1 AT-GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * *
106048 CCGAAAAGAAAGAAGATCCTTACTAGAATCCATGTTTTTCGT-ATTTGAGGCACGAACATAGAAT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGAAT
* * * * *
106112 TTACAAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTA
129 TTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * * *
106177 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACG-GGAATTAGTGTGAGTATTCATGT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGT
* * * *
106241 TTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGAGGAAAAAAAAAGCTTCTCTTGC
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGG-AAAGAAAAGCTTCTCTTGC
* * * * * *
106306 AACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGA
322 GACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAA
* * *
106371 AAGAGTGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGG
386 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
*
106436 AAAATAAGGCAAAGAAAAGATTTTC
451 AAAATAAGGCAAAGAAAAGATTTCC
106461 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
106526 CGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTGGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
106591 ACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * *
106656 AGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGCATAAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * *
106721 TCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * *
106786 CCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAGCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * *
106851 ATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAAA
390 ATGGAGACTTTTACGAGAATCAATGCA-TGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
*
106916 ATGAGGCAAAGAAAAGATTTCC
454 ATAAGGCAAAGAAAAGATTTCC
* * * * *
106938 -TGGCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAGTC
1 AT-GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
* * * * *
107002 CCGAAAAGAAAGAAGATCCTTACTAGAATCCATGTTTTTCGT-ATTTGAGGCACGAACATAGAAT
65 ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGAAT
* * * * *
107066 TTACAAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTA
129 TTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTA
* * * *
107131 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACG-GGAATTAGTGTGAGTATTCATGT
194 TGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGT
* * * * *
107195 TTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGAGGAAAAAAAAGCTTCTCTTGCA
258 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCG
* * * * *
107260 ACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAA
323 ACACCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * *
107325 AGAGTGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGA
387 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
*
107390 AAATAAGGCAAAGAAAAGATTTTC
452 AAATAAGGCAAAGAAAAGATTTCC
107414 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
107479 CGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTGGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * *
107544 ACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * *
107609 AGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGCATAAGTATTCATGTTTG
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * *
107674 TCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
* * *
107739 CCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAAGCTTGAAAAGA
326 CCAAAGCATCAATGTCATGTATCCTAATGAA-GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
* * * * *
107804 ATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAAAA
390 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
*
107869 TGAGGCAAAGAAAAGATTTCC
455 TAAGGCAAAGAAAAGATTTCC
*
107890 AGGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
107955 CGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTGGAATTT
66 CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * * * * * *
108020 ACAAAAATTTGTGGGAAAATAGAGTTTCTTGCG-AGCCAAATCAACAATATCGTGTATCTTTATG
131 ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * * * * *
108084 AGAAGACTATTTTTACGGTTCCT-ATCTAGAAAAGAATGTGGATTAGTATGAATATTCAAGTTTA
196 AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * *
108148 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTTTTCTTGCGACA
261 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
*
108213 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTTGGTTCTCAATCTTGAAAAG
326 CCAAAGCATCAATGTCATGTATCCTAATG-AAGGAATGTG-TTTTTGGTTCCCAATCTTGAAAAG
* *
108278 AATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAA
389 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
108343 ATAAGGCACAA-AAAAGATTTCC
454 ATAAGGCA-AAGAAAAGATTTCC
* * * *
108365 ATGCAAAAGAAAACTATCAATATCATTTATCCTATTAAGGAGAATGAGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
108430 CGAAATGAATGCAA-ATCCTTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGAATT
66 CGAAATGAATG-AAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
** * * *
108494 TACAAAAATCAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATA-ACTTTATCCTTAT
130 TACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTAT
* * *
108558 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGAATTAGTATGAGTATTGATGTT
195 GAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTT
* * * *
108622 TGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGGAAAAAAAAGCTTCTCTTGCAA
259 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGA
108687 CACCAAA
324 CACCAAA
108694 CTTTGATTTA
Statistics
Matches: 25517, Mismatches: 3312, Indels: 846
0.86 0.11 0.03
Matches are distributed among these distances:
438 4 0.00
439 264 0.01
440 363 0.01
441 11 0.00
442 13 0.00
443 5 0.00
445 3 0.00
446 11 0.00
447 4 0.00
448 16 0.00
449 3 0.00
450 1 0.00
451 7 0.00
452 8 0.00
453 7 0.00
454 4 0.00
456 8 0.00
457 7 0.00
458 7 0.00
459 7 0.00
461 3 0.00
462 8 0.00
463 7 0.00
464 6 0.00
465 3 0.00
466 832 0.03
467 31 0.00
468 6 0.00
469 17 0.00
470 291 0.01
471 442 0.02
472 856 0.03
473 2095 0.08
474 2896 0.11
475 4454 0.17
476 10046 0.39
477 1785 0.07
478 108 0.00
479 45 0.00
480 315 0.01
481 56 0.00
484 41 0.00
485 1 0.00
486 1 0.00
488 1 0.00
493 1 0.00
499 1 0.00
501 1 0.00
502 1 0.00
503 127 0.00
504 287 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
ACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
AGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACA
CCAAAGCATCAATGTCATGTATCCTAATGAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
AAGGCAAAGAAAAGATTTCC
Found at i:82597 original size:158 final size:155
Alignment explanation
Indices: 79120--84005 Score: 1008
Period size: 159 Copynumber: 30.9 Consensus size: 155
79110 GAAGAAAGTG
* * * * * *
79120 TTTCTTGTGAAACCAAAGCATCGATATCATGTATCTTTATGAGAAGACTGTGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
* *
79185 ATCCTAAAAAGAATGGGGA-TTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAACTTTG
66 ATCCTGAAAAGAAT-GGGACTTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
** *
79249 ATTCCATCCAT-AGTGGTAGAAAGAAAAGC-
129 ATTTTATCAATAAG-GG-A-AAA-AAAAGCA
** * * * * * *
79278 TTCTCTTGCGACCCCAAAGCATCAATGTCATGTATCCTAATGA-AAGAAATGTGTTTTTGGTTCC
1 TT-TCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAG-AATATGTTTATGGTGCC
* * * * * * ** *
79342 CAATCTTGAAAAGATTGGAGACTT-TTACGAGACTCAATGCATGTCTCATTTAA-AGTACAAACT
64 TAATCCTGAAAAGAATGG-GACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACAAACT
** *
79405 TTGATTTTAAGGAAAATAAGGGAAAGAAAAG-A
126 TTGATTTT-A--TCAATAAGGGAAAAAAAAGCA
* * * * * * * * * *
79437 TTTTCATGCAAAACAAAACCATAAATATTATTTATCCTAATGAGGAGAATATGTTTATAGTGTCT
1 -TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* * * * * * ** * *
79502 AATCAC-GAAATGAATGAAGATCCTTAGTA-GA-ATCCATGTTTGTCTCAATTGAGCCACGAACA
65 AATC-CTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * * *
79564 TAGAATTTA-CAAAAAGTGATAGGAAAAAATCG
126 TTGATTTTATCAATAAGGGA-A--AAAAAAGCA
* * * *
79596 TTTCTTGCGAAACCAAATCATCAATATCATGTATCCTTATGAGAAGACTATGTTTACGGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
* * *
79661 ATCTTGAAAAGAATGGGGA-TTAGTATGAGTATTCATGTTAT-TCTTATTTAGGAGATAAACTTT
66 ATCCTGAAAAGAAT-GGGACTTAGTATGAG-ATTCATGTT-TGTCTTATTTAAGAGACAAACTTT
* * *
79724 GATTTTATGATTAACGGTGGAAAGAAAAGC-
128 GATTTTATCAATAA--G-GGAAAAAAAAGCA
* * * * * * * * * *
79754 TTCTCTTACGATACCAAAGCATCAATGTCATGTATCCTAATGA-AGGTAATGTGTTTTTAGTTCC
1 TT-TCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAG-AATATGTTTATGGTGCC
* * * * * * ** *
79818 CAATCTTGGAAAGAATGGAGACTT-TTACGAGAATCAATGCATGTCTCATTTAA-AGTACAAACT
64 TAATCCTGAAAAGAATGG-GACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACAAACT
** * * *
79881 TTGATTTTAAGGAAAATAGTGCAAAGAAAAG-A
126 TTGATTTT-ATCAATA-AG-GGAAAAAAAAGCA
** * ** * * ** * * * *
79913 TTTCCAGGCAAAAGAAAACCATCAATATCATGTATCCGAATGAGGAGAATGTGTTTATAGTGCCC
1 TTT-CTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
** * * * * * * ** *
79978 AATTATGAAATGAATGAAGATCCTTACTA-GA-ATCCATGTCTGTCTCATTTGCG-GCACGAACT
65 AATCCTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACAAACT
* * * *
80040 TAGAATTTA-CAAAAATTGTTGGGAAAAAAGAG-A
126 TTGATTTTATCAATAA-----GGGAAAAAAAAGCA
* * * * * * * * *
80073 -TTCTTGC-AAAGCCAAATCAGCAATATCCTGTATCTTTATGAGAAGACTATTTTTACGATGCCT
1 TTTCTTGCGAAA-CCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* * * * *
80136 AATCCAGAAAAGAATGTGGA-TTGGTATGAATATTCATGTTTGTCTTAATTAAGAGACAAATTTT
65 AATCCTGAAAAGAATG-GGACTTAGTATG-AGATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
80200 GATTCTATCAATAACGGTGGAAAGACAAGC-
128 GATTTTATCAATAA--G-GGAAAAAAAAGCA
* * * * ** * * *
80230 TTCTCTTGTGACACCAAACCATCAATGTCATTTATCCCAATGA-AAGGAATGTGTTTTTGGT-TC
1 TT-TCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGGTGCC
* * * * ** * * *
80293 TCAAGCTTGAAAAGAATGGAGACATT--TACGAGAATCAATGCATGTCTCATTTAAAATACAAAC
64 T-AATCCTGAAAAGAATGG-GAC-TTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAAC
** * *
80356 TTTGATTTTAAGGAAAATAAGGCAAAGAAAAG-A
125 TTTGATTTT-A--TCAATAAGGGAAAAAAAAGCA
** * ** * * * * *
80389 TTTTCACGCAAAAGAAAACCATCAATATCATTTATCC-TATTAAGGAGAATGTGTTTATAGTGCC
1 -TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTA-TGAGAAGAATATGTTTATGGTGCC
* * * * * *
80453 TAATCAC-GAAATGAATGCAGATCCTTACTA-GA-ATCCATGTTTGTCTCATTT--GAGGCATGA
64 TAATC-CTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACA--A
* * * * **
80513 ACATAGAATTTA-CAAAAATTAGGGGGAAAAAAGCA
123 ACTTTGATTTTATC---AATAAGGGAAAAAAAAGCA
* * * * * * *
80548 TTTCCTACGAAACCAAATCATCAATAACCTTTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
*
80613 ATCCTGAAAAGAATGGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT-A
66 ATCCTGAAAAGAATGGGACTTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
** *
80677 TTTTATCATTATCGGTGGAAAAAAAAGCT
130 TTTTATCA--ATAAG-GGAAAAAAAAGCA
* * * * *
80706 TTTCTTGC-AACACCAAAGCCTCAATGTCATTTATCCTAATGA-AGGGAA-AGTGTTTTTGGAT-
1 TTTCTTGCGAA-ACCAAAGCATCAATATCATTTATCCTTATGAGA-AGAATA-TGTTTATGG-TG
* * * * * * * * * *
80767 CCTAATCTTGGAAAGAGTGGAGACTT-TTACGAGAATCAATGCTTGTCTCAATTAAAATG-CAAA
62 CCTAATCCTGAAAAGAATGG-GACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGA-GACAAA
** *
80830 CTTTGATTTTAGGGAA-AATGAGGCAAAGAAAAG-A
124 CTTTGATTTTA-TCAATAA-G-GG-AAAAAAAAGCA
** * ** * * * * * ***
80864 TTTCCAGGCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAA-AGTGTTTACAATGCC
1 TTT-CTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATA-TGTTTATGGTGCC
* * * * * * * *
80928 TAATCCTGAAATGAAAGAAGATCCTTACTA-GA-ATCCATGTCTGTCTCATTTGAG-GA-ATGAA
64 TAATCCTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACA--AA
** * ****** *
80989 CTTAT-ACATTA-CAAAAATTGGGGGGGGGGGGAAGCT
124 CTT-TGATTTTATCAATAA-----GGGAAAAAAAAGCA
* * * * * *
81025 TTTCTTGCGAATCCAAAGCATCATTATCATGTATCCCTAT---TAGACTATGTTTATGGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
** *
81087 ATCCAAAAAAGAATGTGGA-TTAGTATGAGTATT-ATGTTTGTCTTATTTAAGAGACAAACTTGG
66 ATCCTGAAAAGAATG-GGACTTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
81150 ATTCTATTAATAACGGTGGAAAGAAAGGC-
129 ATTTTATCAATAA--G-GGAAAAAAAAGCA
* * * * * * *
81179 TTCTCTTGCGAGACCGAAGCATCAATGTCATGTATCCTAATGA-AAGGAATTTGTTTTTGGAT--
1 TT-TCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGG-TGC
* * * * ** * * *
81241 CTCAATCTTGAAAAGAATGGAGACTT-TTACGAGAATCAATGCATGTCTCATTTAAAATACAAAC
63 CT-AATCCTGAAAAGAATGG-GACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAAC
** * *
81305 TTTGATTTTAAGGAAAATAAGGCAAAGAAAAG-A
125 TTTGATTTT-A--TCAATAAGGGAAAAAAAAGCA
* * ** * * * * * *
81338 TTTCCATGCAAAAGAAAACCATCAATATCATGTAACCTAATGAGGAA-AATGTGTTTATAGTGCC
1 TTT-CTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGA-GAAGAATATGTTTATGGTGCC
* * * * * * * *
81402 TAATCAC-GAAATGAATGAAGATCTTTACTA-GA-ATTTATGTCTGTCTCATTTGAG-GCACGAA
64 TAATC-CTGAAAAGAATG-GGA-C-TTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACAAA
* * * ** * *
81463 CTTAGAATTTACCAAATTGGTGGGAAAAATAG--
124 CTTTGATTTTATC-AATAAG-GGAAAAAAAAGCA
* * * * * * * * *
81495 TTTCTTTC-AAAGCCAAATCATCAATATCCTGTATCTTTATGAGAAGACTATTTTTACGGTGGCT
1 TTTCTTGCGAAA-CCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* * * *
81559 AAT-CTAGAAAAGAATGTAGA-TTAGTATGAATATTCACGTTTGTCTTATTTAAGAGACAAACCT
65 AATCCT-GAAAAGAATG-GGACTTAGTATG-AGATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
81622 TGATTCTATCAATAACGGTGGAAAGACAAGC-
127 TGATTTTATCAATAA--G-GGAAAAAAAAGCA
** * * * * * * *
81653 TTCTCTTGCGACGCCAAGGCAGT-AATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTC
1 TT-TCTTGCGAAACCAAAGCA-TCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGGTGC
* * * * * ** * ** *
81716 CCAATCATAAAAAGAATGCAGACTT-TTACAAGAATCGATGCATGTCTCATTTAA-AGTACAAAC
63 CTAATCCTGAAAAGAATG-GGACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACAAAC
** * *
81779 TTTGATTTTAAGGAAAATAAGGCAAAGAAAAG-A
125 TTTGATTTT-A--TCAATAAGGGAAAAAAAAGCA
** * * * * * * * * *
81812 TTT-TAATGC-AAAAGAAAACTATCAATATCATATATCCTGATGAGGAGATTGTATTTATAGCGC
1 TTTCT--TGCGAAACCAAAGC-ATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGC
* * * * * * * * * *
81875 TTAATCCCGGAATGAAAGAAGATCCTTACTA-GA-ATTCCTGTTTGTCTCA-TT--G-GCACGAA
63 CTAATCCTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACAAA
* ** * * **
81934 CGTAAAATTTA-CAAAAAATGGTGGGAAAAAAGCA
124 CTTTGATTTTATC-AATAA-GG-GAAAAAAAAGCA
* * * * ** * **
81968 TTTCTTGCAAAACCAAATCATCAATATCCTGTATCCTTATGAGAAGGTTATTTTTACAGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
* *
82033 ATCCAGAAAAGATTAT-GGA-TTAGTATGAGTATTCATGTTTGTCTTATTTAACAGACAAACTTT
66 ATCCTGAAAAGA--ATGGGACTTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
82096 GATTCTATCAATAACGATGGAAAGACAAGC-
128 GATTTTATCAATAA-G--GGAAAAAAAAGCA
* * * * * * * *
82126 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGA-AAGGAATGTGTTTTTGGT-TC
1 TT-TCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAA-GAATATGTTTATGGTGCC
* * * * ** * * *
82189 TCAATCTTGAAAAGAATGGAGACTT-TTACGAGAATCGATGCATGTCTCATTTAAAATACAAACT
64 T-AATCCTGAAAAGAATGG-GACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACT
** * *
82253 TTGATTTTAAGGAAAATAAGGCAAAGAAAAG-A
126 TTGATTTT-A--TCAATAAGGGAAAAAAAAGCA
* ** * * * * * * *
82285 TTTCCTTGCAAAAGAAAACCATCAATATCTTTTAACC-TATTAAGGAGAATGTGTTTATAGTGCC
1 TTT-CTTGCGAAACCAAAGCATCAATATCATTTATCCTTA-TGAGAAGAATATGTTTATGGTGCC
* * * * * *
82349 TAATCAC-GAAATGAATGCAGATCCTTACTA-GA-ATCCATGTTTGTCTTATTTGAG-GCACGAA
64 TAATC-CTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACAAA
* * * * * **
82410 CATAGAATTTACTAAAATTAGGGGGAAAAAAGCA
124 CTTTGATTTTA-T-CAATAAGGGAAAAAAAAGCA
* * * *
82444 TTTCTTGCGAAACCAAATCATCAATATCCTTTATCCTTATGAGAAGACTATGTTTATGGTGCCGA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
*
82509 ATCCTGAAAAGAATGGGAATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
66 ATCCTGAAAAGAATGGGACTTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
*
82574 TTTTATCATTAACGGCGAAAAAAAAGC-
130 TTTTATCAATAA-GG-GAAAAAAAAGCA
* * * * *
82601 TTCTCTTGC-AGCACCAAAGCATCAATGTCATTTATCCTAATGA-AGGGAA-AGTGTTTTTGGAT
1 TT-TCTTGCGA-AACCAAAGCATCAATATCATTTATCCTTATGAGA-AGAATA-TGTTTATGG-T
* * * * * * ** *
82663 --CGAAT-CTTAGAAAGAGTGGAGACTT-TTACGAGAATCAATGCATGTCTCATTTAA-AGTACA
61 GCCTAATCCTGA-AAAGAATGG-GACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACA
* * *
82723 AACTTTGATTTTAAGTAAAATAAGGCAAAGAAAAG-A
122 AACTTTGATTTT-A-T-CAATAAGGGAAAAAAAAGCA
* * ** * * * *
82759 TTTTCATGCAAAAGAAAACCATCAATATCATTTAT-CTTAATGAGGAGAATCTGTTTATAGTGCC
1 -TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTT-ATGAGAAGAATATGTTTATGGTGCC
** * * * * * * *
82823 TAATCAGGAAATGAATGAAGATCCTTACTA-GA-ATCCATGTCTGTCTAATTTTAG-GA-ATGAA
64 TAATCCTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACA--AA
* ** ** *
82884 CTTAT-ACTTTA-C-ATTTGGGGCAAGAAAGCA
124 CTT-TGATTTTATCAATAAGGGAAAAAAAAGCA
* * *
82914 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCCTATGAGAAGACTATGTTTACGGTGCCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
* ** * *
82979 ATCCAGAAAAGAATATG-CATTAGCATGAGTATTCATGTTTGTCTTATTTAAGAGTCAAACTTTG
66 ATCCTGAAAAGAATGGGAC-TTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * *
83043 ATTCTATCAATAACGGTGGAAAGACAAGCT
129 ATTTTATCAATAA--G-GGAAAAAAAAGCA
* ** * * * *
83073 TTTCTTGCGACACCAAAGCATCAACGTCA-TTATCCTAATGA-AGGCAATGTGGTTT-TGGTTCC
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAG-AATAT-GTTTATGGTGCC
* * * ** *
83135 CAAT-CTTAAAACGAATGGAGACTT--T-TGCAAGAATCAATGCATGTCTCATTTAA-AGTACAA
64 TAATCCTGAAAA-GAATGG-GACTTAGTATG--AGATTC-ATGTTTGTCTTATTTAAGAG-ACAA
** * * *
83195 ACTTTGATTTTAAGGAAAATAACGCAAAGAAAAG-A
123 ACTTTGATTTT-A--TCAATAAGGGAAAAAAAAGCA
* * ** * ** ** * ** * * * *
83230 TTTCCATGCAAAAGAAAACCATCAATATCATGCATTGTGACAAGGAGATTGTGTTTATTGTGCCT
1 TTT-CTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* * * * * *
83295 AATCAC-GAAATGAATGAAGATCCTTACTA-GA-A-TCTATGTTTGTCTCATTTTAG-GCACGAA
65 AATC-CTGAAAAGAATG-GGA--CTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACAAA
* * * * *
83355 CATAGAATTTA-CAGA-AATTGATGG-GAAAAAAGCG
124 CTTTGATTTTATCA-ATAA--G--GGAAAAAAAAGCA
* * * ** * *
83389 TTTCTTAC-ATAACCAAATCATCAATATCCTACATCCTTATGAGAAGACTATGTTTATGGAGCCT
1 TTTCTTGCGA-AACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
* * *
83453 AATCCTGAAAAGAATGGGAATTAGTATGAGTGTTCATGTTTGTCTTATTTAAGAGATAAACTTTG
65 AATCCTGAAAAGAATGGGACTTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
** *
83518 ATTTTATCGTTAATGGTGGAAAGAAAAGC-
129 ATTTTATCAATAA--G-GGAAAAAAAAGCA
* ** * * * * * *
83547 TTCTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGA-AGGAAATGTGTTTTTGGTTCC
1 TT-TCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAG-AATATGTTTATGGTGCC
* * * ** * * *
83611 TAAT-CTCAAAACAAATGGAGACTT-TTACAAGAATCAATGCTTGTCTCATTTAA-AGTACAAAC
64 TAATCCTGAAAA-GAATGG-GACTTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAG-ACAAAC
** * *
83673 TTTGATTTTAAGGAAAATAAGGCAAAGAAAAG-A
125 TTTGATTTT-A--TCAATAAGGGAAAAAAAAGCA
* ** * * * ** * * * *
83706 TTTCCATGCGAAAGAAAACCATCACTATCATTTATCCTAAAAAGGAGAATGTGTTTATAGTGGCT
1 TTT-CTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCT
** * * * * * * * * **
83771 AATCCCCAAATGAATGAAGATCCCT-GCAAGA-ATCCATGTTTGTCTCATTTGAGCA-ATGAACT
65 AATCCTGAAAAGAATG-GGA--CTTAGTATGAGATTCATGTTTGTCTTATTTAAG-AGACAAACT
* * ** * *
83833 CAT-ACTTTA-CACA-AATTGGTGGGAAGAAAGCG
126 -TTGATTTTATCA-ATAA--GG-GAAAAAAAAGCA
* * * * * ** *
83865 TATCTCGCGAAACCAAAGCATCAATATCATGTATCCTTATGTGAAGACTATGTTT-TTCTGTCTA
1 TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
* * * *
83929 ATCCAGAAAAGAATGTAGA-TTAGTATGAGTATTCATATTTGCCTTATTTAAGAGACAAACTTTG
66 ATCCTGAAAAGAATG-GGACTTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
**
83993 ATTCCATCAATAA
129 ATTTTATCAATAA
84006 CGGTGGAAAG
Statistics
Matches: 3348, Mismatches: 1015, Indels: 730
0.66 0.20 0.14
Matches are distributed among these distances:
150 1 0.00
151 4 0.00
152 7 0.00
153 13 0.00
154 112 0.03
155 168 0.05
156 161 0.05
157 235 0.07
158 954 0.28
159 1439 0.43
160 138 0.04
161 66 0.02
162 46 0.01
163 4 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (155 bp):
TTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGAATATGTTTATGGTGCCTA
ATCCTGAAAAGAATGGGACTTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
TTTATCAATAAGGGAAAAAAAAGCA
Found at i:84615 original size:159 final size:156
Alignment explanation
Indices: 84164--98918 Score: 4041
Period size: 159 Copynumber: 93.3 Consensus size: 156
84154 AAAAGAAAAC
* * * * *
84164 CATCAATATCATTTATCCTAATG-AGGAGAATGTGCTTATAGTGCCTAATCATGAAATGAA-GGA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG-
* * * * * * * * * * **
84227 AGATCCTTGCTAGAATCCATGTTTGTCTCATTTGACGCACGAACTTAGAATTTACA-AAAATTGG
64 AGAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAAG
** * *
84291 TGGGAAG-AAAGTGTTTCTTGTGAAACCAAAG
127 -GCAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * *
84322 CATCGATATCATGTATCTTTATG-A-GAAGACTGTGTTTATGGTGCCTAATCCTAAAAAGAATGG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * ** ***
84385 GGATTAGTATGAGTATTC-ATGTTTGTCTTATTT-AAGTGACAAACTTTGA-TTCCA-TCCATAG
64 AGATT-TTACGAG-AATCAATGTTTGTCTCATTTAAAGT-ACAAACTTTGATTTTAAGAAAATA-
* * **
84446 TGGTAGAAAGAAAAGCTTCTCTTGCGACCCCAAAG
125 AGG--CAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * * *
84481 CATCAATGTCATGTATCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAG
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAG
* **
84546 ACTTTTACGAGACTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
66 A-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * * *
84611 AAAGAAAAGATTTTCATGCAAAACAAAAC
129 AAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * * * ** * *
84640 CATAAATATTATTTATCCTAATG-AGGAGAATATGTTTATAGTGTCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * *
84704 GATCCTTA-GTAGAATCCATGTTTGTCTCAATT-GAGCCACGAACATAGAATTTACA-AAAAGTG
65 GAT-TTTACG-AGAATCAATGTTTGTCTCATTTAAAG-TACAAACTTTGATTTTA-AGAAAA-T-
* *
84766 ATAGG--AA-AAAATCGTTTCTTGCGAAACCAAAC
124 A-AGGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * *
84798 CTTCAATATCATGTATCTTTATG-A-GAAGACTGTGTTTATGGTGCCTAATCCTAAAAAGAATGG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * * ** *
84861 GGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTCGATTCTATCAATAA-C
64 AGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAA-AATA
* * *
84923 AGTGGAAAGACAAGCTTTTCTTGCGACACCAAAG
125 AG-GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
** * * * * *
84957 CATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAACAATTGGA
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAA-TGGA
* * * *
85021 GACTTTTGCAAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTATGGAAAATAAGG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAAGG
* * * ** *
85086 CAAAGAAAAGATTTCCATGCAAAAGAAAAC
128 CAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * * * ** * *
85116 CATCAATATCATGTATCGTGA-CAAGGAGATTGTGTTTATAGTGCTTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * ** * ** * * *
85180 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAAAATTTACAGAAATTGATG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAAT-A-A
*
85245 GGC--A-AAAAGCGTTTCTTGCGAAACCAAAT
126 GGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * * * * *
85274 CATCAATATCCTGTATCCTTATGTGAGG-ACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * ** *
85338 GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACATTGATTTT-A-TCATTAAC
65 GATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATAA-
** *
85399 GGTGGAA-AAAAGCTTCTCTTAC-AACACCAAAG
126 GG-CAAAGAAAAGCTT-TCTTGCGAA-ACCAAAG
* * *
85431 CATCAATGTCATGTATCCTAATGAAGGGAAAATG-GTTT-TGGAT-CCTAATCTTGGAAAGAGTG
1 CATCAATATCATGTATCCTAATGAA-GG-AAATGTGTTTATGG-TGCCTAATCTTGAAAAGAATG
** *
85493 GAGACTTTTACGAGAATCAATGCATGTCTCAATTAAAGTACAAACTTTGATTTTAAGGAAAATAA
63 GAGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAA
* * * * ** *
85558 GGCAAAGAAAAGATTTTCATCCAAAAGAAAAC
126 GGCAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * * * *
85590 CATCAATATAATTTATCCTAATG-AGGAGAATCTGTTTATAGTGCCTAATCATGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * ** * **
85654 GATCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTAT-ACTTTACA-AAAATTGG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTA-AGAAAA-TAA
**
85717 GGGGAAG-AAAGCGTTTCTTGCGAAACCAAAG
126 GGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * * *
85748 CATCAATCTCATTTATCCTTATG-A-GAAGACTATGTTTATGGTGCCTAATCTGGAAAAGAATGT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
** ** * * * * ** *
85811 AGATTAGCATAAGTATTC-ATGTTTGTCTTATTTAAGAG-AGAAACTTTGATTCTATCAATAA-C
64 AGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAA-AATA
* * *
85873 AGTGGAAAGACAAGCTTTTCTTGCGACACCAAAG
125 AG-GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
** * * * * *
85907 CATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAACAAATGGA
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGA
* * ** *
85971 GACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAACG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGG
* * * ** *
86036 CAAAGAAAAGATTTCCATGCAAAAGAAAAC
128 CAAAGAAAAGCTTT-CTTGCGAAACCAAAG
** * * * * * ** * *
86066 CATCAATATCATGTATTGTGA-CAAGGATATTGTGTTTATAGTGCTTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * ** * * * * *
86130 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTTACAGAAATTGATG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAAT-AAG
* *
86195 G-GAA-AAAAGCGTTTCTTGCGAAACCAAAT
127 GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * * * * *
86224 CATCAATATCCTGTATCCTTATGTGAGG-ACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * ** *
86288 GATTAGTACGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACATTGATTTT-A-TCATTAAC
65 GATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATAA-
* * *
86349 GGTGGAAAAAAAAGCTTCTCTTAC-AACACCAAAG
126 -G-GCAAAGAAAAGCTT-TCTTGCGAA-ACCAAAG
* * * * * *
86383 CATCAATGTCATGTATCCTAATGAAGGAAAAGTGTTTTTGGAT-CCTAATCTTGGAAAGAGTGAA
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGG-TGCCTAATCTTGAAAAGAATGGA
* ** * * * * * * *
86447 GACTTTTATGAGAATCAATGCATGTCTTAATTAAAATAAAAAATTTGATTTTAAGGAAATGAGGC
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAATAAGGC
* ** ** *
86512 AAAGAAAAGATTTCCAG-GCAAAAGAAAA
129 AAAGAAAAGCTTTCTTGCG-AAACCAAAG
* * * ** * * * *
86540 CAATTAATATCATTTATCCTAATG-AGGAGAAAGTGTTTATAATGCCTAATCTCGAAATGAAAGA
1 C-ATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * * ** ** *
86604 AGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGAATGAACTTAT-ACATTACA-AAAATTG
64 AGAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTA-AGAAAA-TA
* **** ** *
86667 GGGGGGGGGGAAGCGTTTCTTGCGAATCCAAAG
125 AGGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * ***
86700 CATCATTATCATGTATCCCT-AT-TA-G-ACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTG
1 CATCAATATCATGTAT-CCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATG-G
* * * * * * **
86761 -GATTAGTATGAGTAT-TATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCT-A-TCAATAAC
64 AGATT-TTACGAGAATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATAA-
* * * **
86821 GGTGGAAAGACAAGCTTCTCATGCGACGCCAAAG
126 -G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * *
86855 CA-CTAATGTCATGTATCCTAATGAAAGG-AATTTGTTTTTGGT-TCTCAATCTTGAAAAGAATG
1 CATC-AATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCT-AATCTTGAAAAGAATG
** *
86917 GAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAATAA
63 GAGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAA
* * ** ** *
86982 GGCAAAGAAAAGATTTCCATGAAAAAGAAAAC
126 GGCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * ** * *
87014 CATCAATATCATGTAACCTAATG-AGGAAAATGTGTTTATAGTGCCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGG-AAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* ** * * * * * * * ** * **
87078 GATCTTTACTAGAATTTATGTCTGTCTCATTTGAGGCACGAACTTAGAATTTACCAAATTGGTGG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAT-AAGG
* * * *
87143 GAAA-AATAG-TTTCTTTC-AAAGCCAAAT
128 CAAAGAAAAGCTTTCTTGCGAAA-CCAAAG
* * * * * * * * * *
87170 CATCAATATCCTGTATCTTTATG-A-GAAGACTATTTTTACGGTGGCTAATCTAGAAAAGATTGT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * **
87233 AGATTAGTATGA-ATATTC-ACGTTTGTCTTATTTAAGAG-ACAAACCTTGATTCT-A-TCAATA
64 AGATT-TTACGAGA-A-TCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATA
* * ** *
87293 ACGGTGGAAAGACAAGCTTCTCTTGCGACGCCAAGG
125 A--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * *
87329 CAGT-AATGTCATGTATCCTAATGAAAGG-AATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGG
1 CA-TCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* ** ** *
87392 AGACTTTTACAAGAATTGATGCATGTCTCATTTAAAGTAGAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* ** *
87457 GCAAAGAAAAGATTT-TAATGC-AAAAGAAAA
127 GCAAAGAAAAGCTTTCT--TGCGAAACCAAAG
* * * * * * ** * * * *
87487 CTATCAATATCATATATCCTGATG-AGGATATTGTATTTATTGTGCTTAATCCCGGAATGAAAGA
1 C-ATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * ** ** * **
87551 AGATCCTTACTAGAATTC-TTGTTTGTCTCA-TT--GGCATGAACTTAAAATTTACA-AAAATTG
64 AGAT-TTTACGAGAA-TCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAA
** * *
87611 GTGGGAA-AAAAGCATTTCTTGCAAAACCAAAT
126 G-GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * ** ** ** *
87643 CATCAATATCCTATATCCTTTTGAGAAGGTTAT-T-TTTACAGTGCCTAATCTAGAAAAGATTAT
1 CATCAATATCATGTATCCTAAT--GAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGA--AT
* * * * * *
87706 -G-GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAACAG-ACAAACTTTGATTCTATCAG-TA
62 GGAGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATT-T-TAAGAAA
* * * * *
87766 AT-GGTGGAAAGACAAGCTTCTATTGCGACACCAAAG
122 ATAAG-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * * *
87802 CATCAATGTCATGTATCCTAATGAA-AAGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* ** * *
87866 GACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAAATTTGATTTTAAGGGAAATAAGG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGG
* * ** * ** *
87931 CGAAGAAAAGACTTCCACGCAAAAGAAAAC
128 CAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * ** * *
87961 CATCAATATCATATATCCTGAA-G-AGGAGAATGTATTTATAGTGCCTAATCCCGAAATGAATGA
1 CATCAATATCATGTATCCT-AATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * * * * *
88024 AGATCCTTACTAGAATTC-GTGTTTGTCTCATTTGAGGTGCGAACTTAGAATTTACA-AAAAT-T
64 AGAT-TTTACGAGAA-TCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAA
*** * * * *
88086 GG-TGGGAAAAATCTGCTTCTAGCTAAACCAAAT
126 GGCAAAG-AAAAGCT--TTCTTGCGAAACCAAAG
*
88119 CATCAATATCCA-GTATCCCT-ATG-A-GAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAAT
1 CATCAATAT-CATGTAT-CCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAAT
* * ** **
88180 GG-G-TTTTAGCATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ATGAACTTTGATTTT-A-TCA
62 GGAGATTTTA-C--GAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAA
* * * *
88239 TTAACGGTGGAAAGAAAAGCTTCTCTTGGGACACCAAAG
122 ATAA--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * *
88278 CATCAATGTCATGTATCCTAATGCA-GAGAATGTGTTTTTGGAT-CCTAATCTTGAAAAGATTGG
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGG-TGCCTAATCTTGAAAAGAATGG
* **
88341 AGACTTTTACGAGATTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* * * * ** *
88406 GCAAACAAAAGATTTCCATGCAAAAGAAAAC
127 GCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * * * *
88437 CATAAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGCGCCTAATCATGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * * **
88501 GATCCTTACTAGAATCCATGTTTGTCTCA-TT--GGCACGAACTTAGAATTT-ACAAAATTGGTG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAATAAG-G
** * *
88562 GGAA-AAAAGCATTTCTTGCAAAACCAAAT
128 CAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * * * *
88591 CTTCAATATCCTGTATCCTTATGAGAGGACTAT-T-TTTACGGCGCCTAAT-TTATAAAAGATTA
1 CATCAATATCATGTATCCTAATGA-AGGA-AATGTGTTTATGGTGCCTAATCTT-GAAAAGA--A
* * * * * * * **
88653 T-G-GATTAGTATGACTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGACTCTATCAATA
61 TGGAGATT-TTACGA-GAATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAA-A
* * * *
88714 A-CAGTGGAAAGACAAGCTTCTCTTGCGATACCAAAG
122 ATAAG-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * *
88750 CATCAATGTCATGTATCCTAATGATA-GAAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGA
1 CATCAATATCATGTATCCTAATGA-AGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
**
88814 GACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGG
* * * ** *
88879 CAAAGAAAAGATTTTCATGCAAAAGAAAAC
128 CAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * * * * ** * *
88909 CTTAAATATCATTTGTCCTAATG-AGAAGAATATGTTTATAGTGCCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* ** * * * * ** * *
88973 GATCCTTA-GTAGAATCCTTGTTTGTCTCATTT-GAGCCACGAACATAAAATTTACAGAAATTGA
65 GAT-TTTACG-AGAATCAATGTTTGTCTCATTTAAAG-TACAAACTTTGATTTTA-AGAAAAT-A
* * * *
89036 TGG-GAA-AAAAGCGTTTCTTGTGAAACCAAAA
125 AGGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * ** *
89067 CATCAATATCTTGTATCCTTATG-A-GAAGACTAAGTTTATGGTGCCTAATTCTT-AAAACAATG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAA-TCTTGAAAAGAATG
* * * * * * * ** *
89129 GGGATTAGTATGAGTATTC-ATGTTTATCTTATTTAAGAG-ATAAACTTTGATTTT-A-TCATTA
63 GAGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATA
* * *
89190 ACGGTGGAAAGAACAGCTTCTCTTAC-AACACCAAAG
125 A--G-GCAAAGAAAAGCTT-TCTTGCGAA-ACCAAAG
* * * * * * *
89226 CATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTGGTTCCCAGTCTTGGAAAGAATGGAG
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAG
* ** *
89291 ACTTTTATGAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
66 A-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * ** *
89356 AAAGAAAAGATTTCCATGCAAAAGAAAAC
129 AAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * *
89385 CATTAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * ** ** * * **
89449 GATCCTTACTAGAATCCATGTCTATCTCATTTGAGGCACGGACTTAAAATTTACA-AACATTGGT
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAA-AAT-AA
* *
89513 GGGAAA-AAAGAG-TTTCTTGC-AAAGCCAAAT
126 GGCAAAGAAA-AGCTTTCTTGCGAAA-CCAAAG
* * * * * **
89543 CATCAATATCCTGTATCTTTATG-A-GAAGACTATTTTTATGGTGCCTAATCCAGAAAAGAATAT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAG-A-AT
* ** * * **
89606 GGA-CTAGTATGA-ATATTC-ATGTTTG--TC---T-AA-T---AACTTTGATTCTATCAATAAC
62 GGAGATTTTACGAGA-A-TCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAA-AA-
* * * * *
89658 GATGG-AAAGACAAGCTTCTCTTACGACACCAAAG
123 TAAGGCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * *
89692 CATCAATGTCATGTATCCTAATGAAAGG-AATGTGTTTTTGGT-TCTCAATCTTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCT-AATCTTGAAAAGAATGG
** *
89755 AGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* * ** *
89820 GCAAAGAAAAGATTTCCTTGCAAAAGAAAAC
127 GCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * * ** * *
89851 CATCAATATCTTTTAACCT-ATTAAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGCA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * ** * * * * * * **
89915 GATCCTTACTAGAATCCATGTTTGTCTTATTCGAGGCACGAACATAGAATTTACA-AAAATTGGT
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAAG-
** * *
89979 GGGAA-AAAAGCATTTCTTGCAAAACCAAAT
127 GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * * *
90009 CATCAATATCCTGTATCCTTATG-A-GAAGACTATTTTTGTGGTGCCTCATCTAT-AAAAGATTA
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCT-TGAAAAGA--A
* * * * * **
90071 T-G-GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCT-A-TCAA
61 TGGAGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAA
* * *
90130 TAACGGTGGAAAGACAAGCTTCTCTTGCGATACCAAAG
123 TAA--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * * * *
90168 CATCAATGTCATGTCTCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAG
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAG
* ** *
90233 ACTTTAACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGC
66 A-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * ** *
90298 AAAGAAAAGATTTTCATGCAAAAGAAAAC
129 AAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * * ** * *
90327 CATAAATATCATTTATCCTAATG-AGGAGAATATGTTTATAGTGTCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * *
90391 GATCCTTA-GTAGAATCCATGTTTGTCTCAATT-GAGCCACGAACATAGAATTTACA-AAAATTG
65 GAT-TTTACG-AGAATCAATGTTTGTCTCATTTAAAG-TACAAACTTTGATTTTA-AGAAAA-T-
* *
90453 ATAGG--AA-AAAATCGTTTCTTGCGAAACCAAAT
124 A-AGGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * *
90485 CATCAATATCATGTATCCTTATG-A-GAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * * ** *
90548 GGATTAGTATGA-ATATTC-ATGTTAGTCTTATTTAGGAG-ATAAACTTTGATTTT-A-TCATTA
64 AGATT-TTACGAGA-A-TCAATGTTTGTCTCATTTA-AAGTACAAACTTTGATTTTAAGAAAATA
* * * *
90608 ACGGTGGAAAAAAAAGCTTCTCTTACGATACCAAAG
125 A--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * * *
90644 CATCAATGTCATGTATCCTAATGAA-GATAATGTGTTTTTAGTTCCCAATCTTGGAAAGAATGGA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* ** *
90708 GACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAATG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGG
* ** * ** *
90773 CAAAGAAAAGATTTCCAGGCAAAAGAAAAC
128 CAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * *
90803 CATCAATATCATGTATCCAAATG-AGGAGAATGTGTTTATAGTGCCCAAT-TATGAAATA-AATG
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCT-TGAAA-AGAATG
* * * * * * * * * * *
90865 AAG-TGCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTAGAATTTACA-AAAAT-
63 GAGAT--TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATA
* * *
90927 TGTTTGGAAA-AAAGAG-TTTCTTGC-AAAGCCAAAT
125 AG---GCAAAGAAA-AGCTTTCTTGCGAAA-CCAAAG
* * * * * * * * **
90961 TAGCAATATCCTGTATCTTTATG-A-GAAGACTATTTTTACGGTGCCTAATCCAGAAAAGAATGT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATG-
* * * * * * **
91024 G-GATTGGTATGA-ATATTC-ATGTTTGTCTTAATTAAGAG-ACAAATTTTGATTCT-A-TCAAT
63 GAGATT-TTACGAGA-A-TCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAAT
* * * *
91083 AACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAG
124 AA--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * *
91120 CATCAATGTCATGTATCCCAATGAAAGG-AATGTGTTTTTGGT-TCTCAAGCTTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCT-AATCTTGAAAAGAATGG
** *
91183 AGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* * ** * ** *
91248 GTAAAGAAAAGATTTTCACGCAAAAGAAAAC
127 GCAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * ** * *
91279 CATCAATATCATTTATCCT-ATTAAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGCA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * ** * * * *
91343 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTTACA-AAAATTAGG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAA-TAAG
** * * *
91407 GGGAA-AAAAGCTTTTCCTACGAAACCAAAT
127 GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * *
91437 CATCAATAACCTTTATCCTAATG-A-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * ** ** *
91500 -GAATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTT-ATTTTATCATTATT
64 AG-ATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATA
* * *
91561 GGTGGAAAAAAAAGCTTTTCTTGC-AACACCAAAG
125 AG-GCAAAGAAAAGC-TTTCTTGCGAA-ACCAAAG
* * * * *
91595 CCTCAATGTCATTTATCCTAATGAAGGGAAA-GTGGTTT-TGGAT-CCTAATCTTGGAAAGAGTG
1 CATCAATATCATGTATCCTAATGAA-GGAAATGT-GTTTATGG-TGCCTAATCTTGAAAAGAATG
** *
91657 GAGACTTTTACGAGAATCAATGCATGTCTCAATTAAAGTACAAACTTTGATTTTAAGGAAAATAA
63 GAGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAA
* * * * ** *
91722 GGCAAAGAAAAGATTTTCATCCAAAAAAAAAC
126 GGCAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * * * ** * *
91754 CATCAATATAATTTATCCTGATG-AGGAGAATCTGTTTATAGTGCCCAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * ** * *
91818 GATCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTAT-ACTTTACA-AAAATTAG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTA-AGAAAA-TAA
**
91881 GGGGAAG-AAAGCGTTTCTTGCGAAACCAAAG
126 GGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * ** *
91912 CATCAATCTCATTTATCCTTATG-A-GAAGACTATGTTTATGGTGCCTAATCCGGAAAAGAATGT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
** ** * * * * ** *
91975 AGATTAGCATAAGTATTC-ATGTTTGTCTTATTTAAGAG-AGAAACTTTGATTCTATCAATAA-C
64 AGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAA-AATA
* * * *
92037 AGTGGAAAGACAAGCTTTTCTTGCGACACCAATG
125 AG-GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
** * * * * *
92071 CATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAACAAATGGA
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGA
* * ** *
92135 GACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAACG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGG
* * * ** *
92200 CAAAGAAAAGATTTCCATGCAAAAGAAAAC
128 CAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * * * ** * *
92230 CATCAATATCATGTATCGTGA-CAAGGAGATTGTGTTTATAGTGCTTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * ** * * * * *
92294 GATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAATTTACAGAAATTGATG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAAT-AAG
* * *
92359 G-GAA-AAAAGTGTTTCTTGCGAAACCAAAT
127 GCAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * * * * * *
92388 CATCAATATCCTGTATTCTTATGTGAGG-ACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * ** *
92452 GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACATTGATTTT-A-TCATTAAC
65 GATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATAA-
* * *
92513 GGTGGAAAAAAAAGCTTCTCTTAC-AACACCAAAG
126 -G-GCAAAGAAAAGCTT-TCTTGCGAA-ACCAAAG
* * * * * * *
92547 CATCAATGTCATGTAGCCTAATGAAGGAAAAGTGTTTTTGGAT-CCTAATCTTGGAAAGAGTGAA
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGG-TGCCTAATCTTGAAAAGAATGGA
* ** * * * * * *
92611 GACTTTTATGAGAATCAATGCATGTCTTAATTAAAATA-AATAATTTGATTTTAAGGAAATGAGG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAA-ACTTTGATTTTAAGAAAATAAGG
* ** ** *
92675 CAAAGAAAAGATTTCCAG-GCAAAAGAAAA
128 CAAAGAAAAGCTTTCTTGCG-AAACCAAAG
* * * ** ** * * *
92704 CAATTAATATCATTTATCCTAATG-AGGAGAAAGTGTTTATAATGCCTAATCCCGAAATGAAAGA
1 C-ATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * ** ** *
92768 AGATCCTTACTAGAATCAATGTCTGTCTCATTTGAGGAATGAACTTAT-ACATTACA-AAAATTG
64 AGAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTA-AGAAAA-TA
* **** ** *
92831 GGGGGGGGGGAAGCGTTTCTTGCGAATCCAAAG
125 AGGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * ***
92864 CATCATTATCATGTATCCCT-AT-TA-G-ACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTG
1 CATCAATATCATGTAT-CCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATG-G
* * * * * * **
92925 -GATTAGTATGAGTAT-TATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCT-A-TTAATAAC
64 AGATT-TTACGAGAATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATAA-
* * *
92985 GGTGGAAAGAAAGGCTTCTCTTGCGAGACCAAAG
126 -G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * *
93019 CATCAATGTCATGTATCCTAATGAAAGG-AATTTGTTTTTGGT-TCTCAATCTTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCT-AATCTTGAAAAGAATGG
** * * *
93082 AGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAATAAGA
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAATAAGG
* * * ** *
93147 CAAAGAAAAGATTTCATGCAAAAGAAAAC
128 CAAAGAAAAGCTTTCTTGCGAAACCAAAG
* * * * * * ** * *
93176 CATCAATATCATGTATCGTGA-CAAGGAGATTGTGTATATTGTGCCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * * * *
93240 GATTCTTACTAGAATCTATGTTTGTCTCATTTGAGGGACGAACATAGAATTTATAGAAATTGATG
65 GATT-TTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAAT-AAG
* *
93305 G-GAA-AAAAGCGTTTCTTGC-ATAACCAAAT
127 GCAAAGAAAAGC-TTTCTTGCGA-AACCAAAG
* * * ** * *
93334 CATCAATATCCTGTATCCTTATG-A-GAAGACTATGTTTATGAAGCGTAATCCTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * ** **
93397 GGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCATTAACG
64 AGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTA--AGAAAAT
** * *
93460 GTGGAAAAAAAAAGCTTCTCTTGC-AACACCAAAG
124 AAGGCAAAGAAAAGCTT-TCTTGCGAA-ACCAAAG
* * * * *
93494 CATCAATGTCATTTATCCTAATGAAGGGAAA-GTGTTTTTGGAT-CCTAATCTTGGAAAGAGTGG
1 CATCAATATCATGTATCCTAATGAA-GGAAATGTGTTTATGG-TGCCTAATCTTGAAAAGAATGG
* * * * * * *
93557 AGACCTTTACGAGAATCAATGCTTGTCTCAATTAAAATGCAAACTTTGATTTTAGGGAAAATGAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAAG
* ** * ** *
93622 GCAAAGAAAAGATTTCCAGGCAAAAAAAAAC
127 GCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * * ** ** * * *
93653 CATTAATATCATTTATCCTAAAGAGGTGAAA-GAGTTTATAATGCCTAATCCCGAAATGAAAGAA
1 CATCAATATCATGTATCCTAATGAAG-GAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * ** **
93717 GATCGTTACTAGAATCCATATCTGTCTCATTTGAGGAATGAACTTAT-ACATTACA-AAAATTGG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTA-AGAAAA-T--
* *** * *
93780 GAGG-GGGGGAAAGCGTTTCTTGCGAATCCAAAG
124 AAGGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * ***
93813 CATCATTATCATGTATCCCT-AT-TA-G-ACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTG
1 CATCAATATCATGTAT-CCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATG-G
* * ** * * * **
93874 -GATTAGTATGACTAT-TATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCT-A-TTAATAAC
64 AGATT-TTACGAGAATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATAA-
* * *
93934 GGTGGAAAGAAAGGCTTTTCTTGCGAGACCAAAG
126 -G-GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * *
93968 CATCAATGTCATGTATCCTAATGAAAGG-AATTTGTTTTTGGT-TCTCAATCTTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCT-AATCTTGAAAAGAATGG
* ** *
94031 AGACTTTTATGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* ** * ** *
94096 GCAAAGAAAAGATTTCCACGCAAAAGAAAAC
127 GCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * ** * *
94127 CATCAATATCATTTATCCT-ATTAAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGCA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * ** * * * *
94191 GATCCTTACTAGAATCCATGTTTTTCTCATTTGAGGCATGAACATAGAATTTACA-AAAATTAGG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAA-TA-A
* * * *
94255 GGGAAA-AAATAG-TTTCTTCCGAAGCCAAAT
126 GGCAAAGAAA-AGCTTTCTTGCGAAACCAAAG
* * * * * * * * * *
94285 CATCAATATCCTCTATCTTTATG-A-GAAGACTATTTTTACGGTGGCTAATCTAGAAAAGAATGT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * **
94348 AGATTAGTATGA-ATATTC-ACGTTTGTCTTATTTAAGAG-ACAAACCTTGATTCT-A-TCAATA
64 AGATT-TTACGAGA-A-TCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATA
* * * **
94408 ACGGTGGAAAGACAAGCTTCTCATGCGACGCCAAAG
125 A--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * *
94444 CA-CTAATGTCATGTATCCTAATGAAAGG-AATTTGTTTTTGGT-TCTCAATCTTGAAAAGAATG
1 CATC-AATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCT-AATCTTGAAAAGAATG
** *
94506 GAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAATAA
63 GAGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAA
* * * * ** *
94571 GGCAAAGACAAGATTTCCATGCAAAAGAAAAC
126 GGCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * *
94603 CATCAATATCATGTAAT-CTAATG-AGGAAAATGTGTTTATAGAGCCTAATCATGAAATGAATGA
1 CATCAATATCATGT-ATCCTAATGAAGG-AAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * ** * * * * * * * ** * **
94666 AGATCCTTACTAGAATTTATGTCTGTCTCATTTGAGGCACGAACTTAGAATTTACCAAATTGGTG
64 AGAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAT-AAG
* * * *
94731 GGAAA-AAATAG-TTTCTTCCGAAGCCAAAT
127 GCAAAGAAA-AGCTTTCTTGCGAAACCAAAG
* * * * * * * * *
94760 CATCAATATCCTGTATCTTTATG-A-GAAGACTATTTTTACGGTGGCTAATCTAGAAAAGAATGT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * **
94823 AGATTAGTATGA-ATATTC-ACGTTTGTCTTATTTAAGAG-ACAAACCTTGATTCT-A-TCAATA
64 AGATT-TTACGAGA-A-TCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATA
* * ** *
94883 ACGGTGGAAAGACAAGCTTCTCTTGCGACGCCAAGG
125 A--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * * * *
94919 CA-CTAATGTCATGCATCCTAGTGAAAGG-AATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGG
1 CATC-AATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * **
94982 AGACTTTTACAAGAATCGATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* ** *
95047 GCAAAGAAAAGATTT-TAATGC-AAAAGAAAA
127 GCAAAGAAAAGCTTTCT--TGCGAAACCAAAG
* * * * * * ** * * * *
95077 CTATCAATATCATATATCCTGAT-AAGGAGATTGTATTTATAGTGCTTAATCCCGGAATGAAAGA
1 C-ATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * ** * **
95141 AGATCCTTACTAGAATTC-TTGTTTGTCTCA-TT--GGCACGAACTTAAAATTTACA-AAAATTG
64 AGAT-TTTACGAGAA-TCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAA
** * *
95201 GTGGGAA-AAAAGCATTTCTTGCAAAACCAAAT
126 G-GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * ** ** **
95233 CATCAATATCGTGTATCCTTATGAGAAGGTTAT-T-TTTACAGTGCCTAATCCAGAAAAGATTAT
1 CATCAATATCATGTATCCTAAT--GAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGA--AT
* * * * * **
95296 -G-GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAACAG-ACAAACTTTGATTCT-A-TCAAT
62 GGAGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAAT
* * *
95355 AACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAG
124 AA--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * * * *
95392 CATCAATGTCATGTATCCTAATGAA-AAGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* ** * *
95456 GACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAAATTTGATTTTAAGGGAAATAAGG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGG
* * ** * ** *
95521 CGAAGAAAAGACTTCCACGCAAAAGAAAAC
128 CAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * ** * ** * *
95551 CATCAATATCATATATCCTGAA-G-GGGAGAATGTACTTATAGTGCCTAATCCCGAAATGAATGA
1 CATCAATATCATGTATCCT-AATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * * * *
95614 AGATCCTTACTAGAATTC-ATGTTTATCTCATTTGAGGCACGAACTTAGAATTTACA-AAAATTG
64 AGAT-TTTACGAGAA-TCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAA-T-
** * ** * * *
95677 GTGGGAAA-AATTTGC-TTCTAGCTAAACCAAAT
124 AAGGCAAAGAA-AAGCTTTCTTGCGAAACCAAAG
* * *
95709 CATCAATATCCA-GTATCCTTATTAGAA-G-ACTGTGTTTATGGTGCCTAATCCTGAAAAGAATG
1 CATCAATAT-CATGTATCC-TAAT-GAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATG
** * * ** ** *
95771 G-G-TTTTAGCATGAGTTTTC-ATGTTTGACTTATTTAAGAG-ATGAACTTTGATTTT-A-TCAT
63 GAGATTTTA-C--GAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAA
* * *
95830 TAACGGTGGAAAGAAAAGCTTCTCTTGGGACACCAAAG
123 TAA--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * * *
95868 CATCAATGTCATGTATCCTAATGCAAAG-AATGTGTTTTTGGAT-CCTAATCTTGAAAAGATTGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGG-TGCCTAATCTTGAAAAGAATGG
* * **
95931 AGACTTTTACTAGATTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* * * * ** *
95996 GCAAACAAAAGATTTCCATGCAAAAGAAAAC
127 GCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * ** * * *
96027 CATAAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGCACCTAATCATGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * ** * **
96091 GATCCTTACTAGAATCCATGTTTGTCTCA-TT--GGCACGAACTTAAAATTTACA-AAAATTGGT
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAATAAG-
** * *
96152 GGGAA-AAAAGCATTTCTTGCAAAACCAAAT
127 GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * *
96182 CATCAATATCCTGTATCCTTATG-A-GAAGACTATTTTTACGGTGCCTAATCTAT-AAAAGATTA
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCT-TGAAAAGA--A
* * * * **
96244 T-G-GATTAGTATGAGTATTC-ATGTTTGTCGT-ATTTAAGAG-ACAAACTTTGATTCT-A-TCA
61 TGGAGATT-TTACGAG-AATCAATGTTTGTC-TCATTTAA-AGTACAAACTTTGATTTTAAGAAA
* * *
96302 ATAACGGTGGAAAGACAAGCTTCTCTTGCGATACCAAAG
122 ATAA--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
** * * * * * *
96341 CATCAATGCCATGTCTCCTAATGAAAGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAG
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAG
* * **
96406 ACTTTAACGAGAATCATTGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGC
66 A-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGGC
* * * ** *
96471 AAAGAAAAGATTTTCATGCAAAAGAAAAC
129 AAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * * * * ** * *
96500 CTTAAATATCATTTGTCCTAATG-AGAAGAATATGTTTATAGTGCCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * *
96564 GATCCTTA-GTAGAATCCATGTTTGTCTCATTT-GAGCCACGAACATAGAATTTACAGAAATTGA
65 GAT-TTTACG-AGAATCAATGTTTGTCTCATTTAAAG-TACAAACTTTGATTTTA-AGAAAAT-A
* * *
96627 TGG-GAA-AAAAGCGTTTCTTGCGAAACCAAAA
125 AGGCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * **
96658 CATCAATATCCTGTATCCTTATG-A-GAAGACTAAGTTTATGGTGCCTAAT-TCTGAAAAGAATG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCT-TGAAAAGAATG
* * * * * * * ** *
96720 GGGATTAGTATGAGTATTC-ATGTTTATCTTATTTAAGAG-ATAAACTTTGATTTT-A-TCATTA
63 GAGATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAATA
* *
96781 ACGGTGGAAAGAAAAGCTTCTCTTAC-AACACCAAAG
125 A--G-GCAAAGAAAAGCTT-TCTTGCGAA-ACCAAAG
* * * * * *
96817 CATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTGGTTCCCAATCTTGGAAAGAATGGAG
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAG
* ** *
96882 ACTTTTATGAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATAAGGC
66 A-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAG-AAAATAAGGC
* * ** *
96947 AAAGAAAAGATTTCCATGC-AAAAGAAAA
129 AAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * *
96975 CGATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATAGTCCCTAATCATGAAATGAATGA
1 C-ATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * * * * * * * ** * *
97039 AGATCCTTACTAGAATCCATGTCTATCTCATTTGAGGCACGAACTTAAAATTTACA-AAAATTGG
64 AGAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAA-T-A
* * * *
97103 TGGGAAA-AAAGAG-TTTCTTGCGAAGCCAAAT
125 AGGCAAAGAAA-AGCTTTCTTGCGAAACCAAAG
* * * * * *
97134 CATCAATATCCTGTATCTTTATG-A-GAAGACTATTTTTATGGTGCCTAATCTAGAAAAGAATGT
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATG-
** * * **
97197 G-GACTAGTATGA-ATATTC-ATGTTTG--TC--TT--A-T---AACTTTGATTCT-A-TCAATA
63 GAGA-TTTTACGAGA-A-TCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAATA
* * *
97247 ACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAG
125 A--G-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
* * *
97283 CATCAATGTCATGTATCCTAATGAAAGG-AATGTGTTTTTGGT-TCTCAATCTTGAAAAGAATGG
1 CATCAATATCATGTATCCTAATG-AAGGAAATGTGTTTATGGTGCCT-AATCTTGAAAAGAATGG
* ** *
97346 AGACTTTTACGAGAATCGATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* * ** *
97411 GCAAAGAAAAGATTTCCTTGCAAAAGAAAAC
127 GCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * * ** * *
97442 CATCAATATCTTTTAACCT-ATTAAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGCA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * * * * * *
97506 GATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACATAGAATTTACA-AAAATTAGG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTA-AGAAAA-TAAG
** *
97570 GGGAA-AAAAGCATTTCTTGCGAAACCAAAT
127 GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* * * * * * *
97600 CATCAATATCCTTTATCCTTATG-A-GAAGACTATGTTTATTGTGCCTAATCCTGAAAAAAATGG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCTTGAAAAGAATGG
* * * ** *
97663 -GAATTAGTT-TGA-ATATTC-ATGTTTGTCTTATTTAAGAG-GCAAACTTTGATTTT-A-TCAT
64 AG-ATT--TTACGAGA-A-TCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAAA
* * *
97721 TAACGGTGAAAAAAAAAGCTTCTCTTGC-AGCACCAAAG
123 TAA--G-GCAAAGAAAAGCTT-TCTTGCGA-AACCAAAG
* * * * * * *
97759 CATCAATGTCATTTATCCTAATGAAGGGAAA-GTGTTTTTGGAT--CGAATCTTGGAAAGAGTAG
1 CATCAATATCATGTATCCTAATGAA-GGAAATGTGTTTATGG-TGCCTAATCTTGAAAAGAATGG
**
97821 AGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGTAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAG-AAAATAAG
* * * * ** *
97886 GCAAAGAAAGGATTTTCATGCAAAAGAAAAC
127 GCAAAGAAAAG-CTTTCTTGCGAAACCAAAG
* * * * ** * *
97917 CATCAATATCATTTATCTTAATG-AGGAGAATCTGTTTATAGTGCCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * * * ** * **
97981 GATCTTTACTAGAATCCATGTCTGTCTAATTTTAGGAATGAACTTAT-ACTTTACA-AAAATTTG
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT-TGATTTTA-AGAAAATAAG
*** *
98044 GGGCAGGAAAGCGTTTCTTGCGAAACCAAAG
127 GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* ** *
98075 CATCAATATCATTTATCCCT-ATG-A-GAAGACTACGTTTACGGTGCCTAATCTAT-AAAAGAAT
1 CATCAATATCATGTAT-CCTAATGAAGGAA-A-TGTGTTTATGGTGCCTAATCT-TGAAAAGAAT
** * * * * **
98136 --ATGCATTAGCATGAGTATTC-ATGTTTGTCTTATTTAAGAGT-CAAACTTTGATTCT-A-TCA
62 GGA-G-ATT-TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAGAAA
* * * *
98195 ATAACGGTGGAAAGACAAGCTTTTCTTGCGACATCAAAG
122 ATAA--G-GCAAAGAAAAGC-TTTCTTGCGAAACCAAAG
* ** * * * *
98234 CATGAACGTCATGTATTCTAATGAAGGCAATGTGGTTT-TGGTTCCCAATCTT-AAAACGAATGG
1 CATCAATATCATGTATCCTAATGAAGGAAATGT-GTTTATGGTGCCTAATCTTGAAAA-GAATGG
* * **
98297 AGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG
64 AGA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAG
* * * ** *
98362 GCAAAGAAAAGATTTCCATGCAAAAGAAAAC
127 GCAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * * * * * ** * *
98393 CATCAATATCATGTATCGTGA-CAAGGAGATTGTGTTTCTTGTGCCTAATCACGAAATGAATGAA
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGA
* * * * * ** * * * * *
98457 GATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGCT-TGAACATAGAATTTACAGAAATTGAT
65 GAT-TTTACGAGAATCAATGTTTGTCTCATTTAAAG-TACAAACTTTGATTTTA-AGAAAAT-AA
* * *
98521 GG-GAA-AAAAGCGTTTCTTAC-ATAACCAAAT
126 GGCAAAGAAAAGC-TTTCTTGCGA-AACCAAAG
* * * * * *
98551 CATCAATATCCTATATCCTTATG-A-GAAGACTATGTTTATGGAGCCCT-ATCCTGAAAAGAATG
1 CATCAATATCATGTATCCTAATGAAGGAA-A-TGTGTTTATGGTG-CCTAATCTTGAAAAGAATG
* ** * * **
98613 G-GAATTAGTT-TGAGTGTTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCGTTA
63 GAG-ATT--TTACGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTA-AGAAA
* * * *
98674 AT-GGTGGAATGAAAAGCTTCTCTTGCGACACCAAAG
122 ATAAG-GCAAAGAAAAGCTT-TCTTGCGAAACCAAAG
** * * * *
98710 CATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATC-TCAAAACGAATGGA
1 CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAA-GAATGGA
* * ** *
98774 GACTTTTGCAAGAATCAATGCATGCCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGG
65 GA-TTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-GAAAATAAGG
* * ** *
98839 CAAAGAAAAGTTTTCCATGCGAAAGAAAAC
128 CAAAGAAAAGCTTT-CTTGCGAAACCAAAG
* * *
98869 CATCAATATCATTTATCCTAA-AAAGGAGAATGTGTTTATAGTGCCTAATC
1 CATCAATATCATGTATCCTAATGAAGGA-AATGTGTTTATGGTGCCTAATC
98919 CCCAAATGAA
Statistics
Matches: 10383, Mismatches: 3186, Indels: 2055
0.66 0.20 0.13
Matches are distributed among these distances:
145 1 0.00
146 4 0.00
147 17 0.00
148 40 0.00
149 129 0.01
150 6 0.00
151 9 0.00
152 5 0.00
153 14 0.00
154 115 0.01
155 432 0.04
156 388 0.04
157 586 0.06
158 2933 0.28
159 5030 0.48
160 494 0.05
161 81 0.01
162 96 0.01
163 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (156 bp):
CATCAATATCATGTATCCTAATGAAGGAAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAG
ATTTTACGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAATAAGGCAA
AGAAAAGCTTTCTTGCGAAACCAAAG
Found at i:100249 original size:28 final size:28
Alignment explanation
Indices: 100218--100281 Score: 119
Period size: 28 Copynumber: 2.2 Consensus size: 28
100208 TTTGATTGTA
100218 AGGAAAATAATGCAAAGAAAAGATTTCC
1 AGGAAAATAATGCAAAGAAAAGATTTCC
100246 AGGAAAATAATGCAAAGAAAAGATTTCC
1 AGGAAAATAATGCAAAGAAAAGATTTCC
100274 AGGCAAAA
1 AGG-AAAA
100282 GAAAACCATC
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 31 0.89
29 4 0.11
ACGTcount: A:0.55, C:0.11, G:0.19, T:0.16
Consensus pattern (28 bp):
AGGAAAATAATGCAAAGAAAAGATTTCC
Found at i:101257 original size:159 final size:158
Alignment explanation
Indices: 100653--108428 Score: 1611
Period size: 159 Copynumber: 49.0 Consensus size: 158
100643 GGTTCTCAAG
* *
100653 CTTGAAAAGAATGGAGACATTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
* * * * *
100718 TAAAGGAAAATAAGGCAAAGAAAAGATTTCCACGTAAAAGAAAACCATCAATATCATTTATCCT-
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* *
100782 ATTAAGGAGAATATGTTTATAGTGCCTAAT
131 ATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * ** * * * ** * * *
100812 CACGAAATGAATGCAGA-TCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* ** * * * * * * *
100876 TTTACA--AAAATTAGGGGGAA-AAAAGCA-TTTCCTACGAAACCAAATCATCAATAACCTTTAT
65 TTTA-AGGAAAA-TAAGGCAAAGAAAAG-ATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * *
100937 CCTAACG-AGAAGACTATGTTTATGGTGCCTAAT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * * ** *
100970 CCTGAAAAGAATGGA-AATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTT-
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
** ** ** * * * * * * *
101031 ATTTT-ATCATTATCGGTGGAAAAAAAAGCTTTTCTTGCAACACCAAAGCC-TCAATGTCATTTA
63 ATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAA-AACAAAACCATCAATATCATTTA
*
101094 TCCTAATGAAGGGAAAGTGTTTTTGGAT-CCTAAT
126 TCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* *
101128 CTTGGAAAGAGTGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
*
101193 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* *
101258 ATG-AGGAGAATCTGTTTATAGTGCCTAAT
131 ATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * ** * * * * * **
101287 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTAT-A
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT-TGA
* ** ** ** * * * *
101350 CTTTACA--AAAATTGGGGGGAAG-AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTAT
64 TTTTA-AGGAAAA-TAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * * *
101412 CCTTATG-AGAAGACTATTTTTATGGTGCCTAAT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
** ** ** * ** *
101445 CCGGAAAAGAATGTG-GA-TTAGCATAAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTT
1 CTTGAAAAGAATG-GAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTT
* * * * * * * * * * ** *
101506 GATTCTATCA-GTAAGT--GG-AAAGACAAGCTTTTCTTGCGATACCAAAGCATCAACGTCATGT
62 GATT-T-TAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTT
* * * *
101567 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
125 ATCCTAATGAAGGGAA-ATGTTTATGGTGCCTAAT
* * *
101602 CTT-AAAACAAATGGAGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
1 CTTGAAAA-GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* * * *
101666 TTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCGT
65 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCT
* * ** * *
101731 GA-CAAGGAGATTGTGTTTATAGTGCTTAAT
130 AATGAAGG-GA-AATGTTTATGGTGCCTAAT
** * * * * * ** * * * ** * * *
101761 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATAGAA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* * * ** * * * * * *
101825 TTTACA-GAAATTGATGG-GAA-AAAAGCGTTTCTTGCGAAACTAAATCATCAATATCCTGTATC
65 TTTA-AGGAAAAT-AAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATC
* * * *
101887 CTTATG-TGAGGACTATGTTTATGGTGCCCAAT
128 CTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * * ** * *
101919 CCTGAAAAGAATGGGGA-TTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACATTG
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
** * * * * * * * * * * *
101981 ATTTT-A--TCATTAACGGTGGAAAAAAAAGCTTCTCTTACAACACCAAAGCATCAATGTCATTT
63 ATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTT
* *
102043 ATCCTAATGAAGGAAAACTGTTTTTGGAT-CCTAAT
125 ATCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* * * * * * * * * *
102078 CTTGGAAAGAGTGAAGACTTTTATGAGAATCAAGGCATGTCTTAATTAAAATAAAAAATTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
* * * * * * *
102143 TTAAGG-AAATGAGGCAAAGAAAAGATTTCCAGGCAAAAGAAAACAATTAATATCTTTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
**
102207 ATG-AGGAGAAAGTGTTTATAATGCCTAAT
131 ATGAAGG-GAAA-TGTTTATGGTGCCTAAT
** * * * * * * * **
102236 CCCGAAATGAAAGAAGA-TCCTTACTAGAATCCATGTC-TGTCTTATTTGAGAA--ATGAACTTA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATG-CATGTCTCATTT-A-AAGTACAAACTT-
** ** * ** * * * * * * *
102297 T-ACATTACA--AAAATTGGGGC-GA-AAAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATG
61 TGATTTTA-AGGAAAA-TAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATT
* *
102357 TATCCCT-AT-AAGAAGACTATGTTTATGGTGCCTAAT
124 TAT-CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
*** * * * ** ** *
102393 CCAAAAAAGAATGTG-GA-TTAGTATGAGTATTTATGTTTATCAT-ATTTAAGAG-ACAAACTTT
1 CTTGAAAAGAATG-GAGACTT-TTACGAGAATCAATGCATGTC-TCATTTAA-AGTACAAACTTT
* ** * * * * * * * * *
102454 GATTCT-A--TTAATAACGGTGGAAAGAAAGGCTTCTCTTG-AGAGACCAAAGCATCAATGTCAT
62 GATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCA-AAACAAAACCATCAATATCAT
* * * * *
102515 GTATCCTAATGAAAGGAATTTGTTTTTGGT-TCTCAAT
123 TTATCCTAATGAAGGGAA-ATGTTTATGGTGCCT-AAT
* * * *
102552 CTTGAAAAGAATGGAGACTTTTATGTGAATCAATGCATGTCTCAATTAAAATACAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
* * * * *
102617 TTAAGGAAAATAAGACAAAGAAAAGA-TTTCATGCAAAAGAAAACCATCAATATCATGTATCGTG
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* ** *
102681 A-CAAGGAGATTGTGTTTATTGTGCCTAAT
131 ATGAAGG-GA-AATGTTTATGGTGCCTAAT
** * * * * ** * * * * * * *
102710 CACGAAATGAATGAAGA-TTCTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACATAGAA
1 CTTGAAAAGAATGGAGACTT-TTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* * * ** * * * * * *
102774 TTTATA-GAAATTGATGG-GAA-AAAAGCGTTTCTTGCATAACCAAATCATCAATATCCTGTATC
65 TTTA-AGGAAAAT-AAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATC
* * * * *
102836 CTTATG-AGAAGACTATGTTTATGGAGCGTAAT
128 CTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * * ** *
102868 CCTGAAAAGAATGGGGA-TTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTG
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
** * * * * * * * * * *
102930 ATTTT-A--TCATTAACGGTGGAAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTT
63 ATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTT
*
102992 ATCCTAATGAAGGGAAACTGTTTTTGGAT-CCTAAT
125 ATCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* ** * * * *
103027 CTTGGAAAGAGCGGAGACCTTTACGAGAATCAATGCTTGTCTCAATTAAAATGA-AAACTTTGAT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGT-ACAAACTTTGAT
* * * * * *
103091 TTTAGGGAAAATGAGGCAAAGAAAAGA-TTTCAAGGCAAAAGAAAACCATTAATACCATTTATCC
65 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTC-ATGCAAAACAAAACCATCAATATCATTTATCC
* **
103155 TAAAG-AGGAGAAAGTGTTTATAATGCCTAAT
129 TAATGAAGG-GAAA-TGTTTATGGTGCCTAAT
** * * * * * * * * * **
103186 CCCGAAATGAAAGAAGA-TCCTTACTAGAATCCATGTC-TGTCTCATTTGAGGAATGAACTTAT-
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATG-CATGTCTCATTTAAAGTACAAACTT-TG
** ** * ** ** * * * * * *
103248 ACATTACA--AAAATTGGGGGGGGGGGAGGGAAAAAGCGTTTCTTGCGAATCCAAAGCATCATTA
63 ATTTTA-AGGAAAA-T------AAGGCAAAG-AAAAGATTTTCATGCAAAACAAAACCATCAATA
* * *
103311 TCATGTATCCCT-AT-TA--GACTATGTTTATGGTGCCTAAT
119 TCATTTAT-CCTAATGAAGGGA-AATGTTTATGGTGCCTAAT
*** * * * * ** * *
103349 CCAAAAAAGAATGTG-GA-TTAGTATGAGTAT-TATGTTTGTCTTATTTAAGAG-ACAAACTTTA
1 CTTGAAAAGAATG-GAGACTT-TTACGAGAATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
* ** * * * * * * * * * * *
103410 ATTCT-A--TTAATAACGGTGGAAAGAAAGGCTTCTCTTGCGAGACCAAAGCATCAATGTCATGT
63 ATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTT
* * * **
103472 ATCCTAATGAAAGGAATTTGTTTTTGGT-TTTCAAT
125 ATCCTAATGAAGGGAA-ATGTTTATGGTGCCT-AAT
103507 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTT-AAGATACAAACTTTGAT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAG-TACAAACTTTGAT
* *
103571 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGTAAAAGAAAACCATCAATATCATTTATCCT
65 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCT
* *
103636 AATG-AGGAGAATCTGTTTATAGTGCCTAAT
130 AATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * ** * * * * * **
103666 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTAT-A
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT-TGA
* ** *** ** * * * * *
103729 CTTTACA--AAAATTGGGGGGA-AAAAGCGTTTCTTGCGAACCTAAAGCATCAATA-CATTTATC
64 TTTTA-AGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATC
* * * * * *
103790 CTTATG-AGAAGACTATGTTTATAGAGCGTAAT
128 CTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * * * ** *
103822 CCTGAAAAGAATGGGGA-TTAGTATGAGTATTC-GTGTTTGTCTTATTTAAGAG-ACAAACTTTG
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
** ** * * * * * * * * *
103884 ATTTTATCATTAACGGT--GGAAAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTT
63 ATTTTA--AGGAA-AATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTT
*
103947 ATCCTAATGAAGGGAAAGTGTTTTTGGAT-CCTAAT
125 ATCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* * * * * *
103982 CTTGGAAAGAGTGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGCAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
* * * * *
104047 TTAGGGAAAATGAA-GCAAAGAAAAGATTTCCAGGCAAAAGAAAACCATTAATATCATTTATCCT
66 TTAAGGAAAAT-AAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCT
* **
104111 AAAG-AGGAGAAAGTGTTTATAATGCCTAAT
130 AATGAAGG-GAAA-TGTTTATGGTGCCTAAT
** * * * * * * ** * * * * * * *
104141 CCCGAAATGAAAGAAGA-TCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACAAACATAGAA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGAT
* ** * * * * *
104205 TTTACA--AAAATTAGTGGGAA-AAAAGCA-TTTCTTGCTAAACGAAATCATCAATATCCTTTAT
65 TTTA-AGGAAAATAAG-GCAAAGAAAAG-ATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * *
104266 CCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * * * **
104299 CCTAAAAAGAATGG-GAATTAGTATGAGTATTC-ATGTTTGTCTTC-TTTAAGAG-ACAAACTTT
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTC-TCATTTAA-AGTACAAACTTT
** ** ** * * * * * * * * *
104360 GATTTT-ATCATTATCGGTGGAAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTTA
62 GATTTTAAGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTA
* *
104424 TCCTAATAAAGGGAAAGTGTTTTTGGAT-CCTAAT
126 TCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* * * ** *
104458 CTTGGAAAGAGTGGAAACTTTTACGAGAATCAGGGCATGTCTCAATTAAAGTACAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
*
104523 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* * *
104588 ATG-AGGAGAATCTGTTTATAGTACCTAAT
131 ATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * ** ** * * * **
104617 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTTTGTCAAATATAAGGAATGAACTTAT-A
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT-TGA
* ** ** ** * * * *
104680 CTTTACA--AAAATTGGGGGGAA-AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTAT
64 TTTTA-AGGAAAA-TAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * *
104742 CCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
** * ** ** * ** * *
104775 CCAGAAAAAAATGTG-GA-TTAGCATAAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAAATTT
1 CTTGAAAAGAATG-GAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTT
* ** * * * * * * * * ** *
104836 GATTCT-A--TCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATG
62 GATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATT
* * * *
104898 TATCCTAATGAAGGGAATGTGTTTTTGGT-TCTCAAG
124 TATCCTAATGAAGGGAA-ATGTTTATGGTGCCT-AAT
* * * *
104934 CTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATGCAAACTTTGAT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCA-TGTCTCATTTAAAGTACAAACTTTGAT
* * * * * *
104999 TTTAGGGAAAATGAGGCAAAAAAAAGA-TTTCCTGGCAAAAGAAAACCATTAATATCATTTATCC
65 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCAT-GCAAAACAAAACCATCAATATCATTTATCC
* ** *
105063 TAAAG-AGGAGAAAGTGTTTATAATGCCTAGT
129 TAATGAAGG-GAAA-TGTTTATGGTGCCTAAT
** * * * * * ** * * * * * * *
105094 CCCGAAAAGAAAGAAGA-TCCTTACTAGAATCCATGTTTTTCGT-ATTTGAGGCACGAACATAGA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTC-TCATTTAAAGTACAAACTTTGA
* * ** * * * * *
105157 ATTTACA--AAAATTAGTGGGAA-AAAAGCA-TTTCTTGCTAAACGAAATCATCAATATCCTTTA
64 TTTTA-AGGAAAATAAG-GCAAAGAAAAG-ATTTTCATGCAAAACAAAACCATCAATATCATTTA
* * *
105218 TCCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
126 TCCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * ** * ** *
105252 CCTGAAAAGAACGG-GAATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTG
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
** *** * * * * * * * *
105314 ATTTTATCA-TTAACGGAGG-AAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTTA
63 ATTTTA--AGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTA
*
105377 TCCTAATGAAGGGAAAGTGTTTTTGGAT-CCTAAT
126 TCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* * * *
105411 CTTGGAAAGAGTGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
*
105476 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* *
105541 ATG-AGGAGAATGTGTTTATAGTGCCTAAT
131 ATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * * * * * *
105570 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTC-TGTCTCATTTGAGGCACGAACTTGGA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATG-CATGTCTCATTTAAAGTACAAACTTTGA
* ** ** ** * * * *
105633 ATTTACA--AAAATTGGGGGGAA-AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTAT
64 TTTTA-AGGAAAA-TAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * *
105695 CCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
** ** ** * ** * *
105728 CCAGAAAAGAATGTG-GA-TTAGCATAAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAAATTT
1 CTTGAAAAGAATG-GAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTT
* ** * * * * * * * * ** *
105789 GATTCT-A--TCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATG
62 GATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATT
* * * *
105851 TATCCTAATGAAGGGAATGTGTTTTTGGT-TCTCAAG
124 TATCCTAATGAAGGGAA-ATGTTTATGGTGCCT-AAT
* * * *
105887 CTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATGCAAACTTTGAT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCA-TGTCTCATTTAAAGTACAAACTTTGAT
* * * * *
105952 TTTAGGGAAAATGAGGCAAAGAAAAGA-TTTCCTGGCAAAAGAAAACCATTAATATCATTTATCC
65 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCAT-GCAAAACAAAACCATCAATATCATTTATCC
* ** *
106016 TAAAG-AGGAGAAAGTGTTTATAATGCCTAGT
129 TAATGAAGG-GAAA-TGTTTATGGTGCCTAAT
** * * * * * ** * * * * * * *
106047 CCCGAAAAGAAAGAAGA-TCCTTACTAGAATCCATGTTTTTCGT-ATTTGAGGCACGAACATAGA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTC-TCATTTAAAGTACAAACTTTGA
* * ** * * * * *
106110 ATTTACA--AAAATTAGTGGGAA-AAAAGCA-TTTCTTGCTAAACGAAATCATCAATATCCTTTA
64 TTTTA-AGGAAAATAAG-GCAAAGAAAAG-ATTTTCATGCAAAACAAAACCATCAATATCATTTA
* * *
106171 TCCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
126 TCCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * ** * ** *
106205 CCTGAAAAGAACGG-GAATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTG
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
** *** * * * * * * * * *
106267 ATTTTATCA-TTAACGGAGGAAAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTTA
63 ATTTTA--AGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTA
*
106331 TCCTAATGAAGGGAAAGTGTTTTTGGAT-CCTAAT
126 TCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* * * *
106365 CTTGGAAAGAGTGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
*
106430 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* *
106495 ATG-AGGAGAATGTGTTTATAGTGCCTAAT
131 ATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * * * * * *
106524 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTC-TGTCTCATTTGAGGCACGAACTTGGA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATG-CATGTCTCATTTAAAGTACAAACTTTGA
* ** ** ** * * * *
106587 ATTTACA--AAAATTGGGGGGAA-AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTAT
64 TTTTA-AGGAAAA-TAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * *
106649 CCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
** ** ** * ** * *
106682 CCAGAAAAGAATGTG-GA-TTAGCATAAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAAATTT
1 CTTGAAAAGAATG-GAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTT
* ** * * * * * * * * ** *
106743 GATTCT-A--TCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATG
62 GATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATT
* * * *
106805 TATCCTAATGAAGGGAATGTGTTTTTGGT-TCTCAAG
124 TATCCTAATGAAGGGAA-ATGTTTATGGTGCCT-AAT
* * * *
106841 CTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATGCAAACTTTGAT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCA-TGTCTCATTTAAAGTACAAACTTTGAT
* * * * *
106906 TTTAGGGAAAATGAGGCAAAGAAAAGA-TTTCCTGGCAAAAGAAAACCATTAATATCATTTATCC
65 TTTAAGGAAAATAAGGCAAAGAAAAGATTTTCAT-GCAAAACAAAACCATCAATATCATTTATCC
* ** *
106970 TAAAG-AGGAGAAAGTGTTTATAATGCCTAGT
129 TAATGAAGG-GAAA-TGTTTATGGTGCCTAAT
** * * * * * ** * * * * * * *
107001 CCCGAAAAGAAAGAAGA-TCCTTACTAGAATCCATGTTTTTCGT-ATTTGAGGCACGAACATAGA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTC-TCATTTAAAGTACAAACTTTGA
* * ** * * * * *
107064 ATTTACA--AAAATTAGTGGGAA-AAAAGCA-TTTCTTGCTAAACGAAATCATCAATATCCTTTA
64 TTTTA-AGGAAAATAAG-GCAAAGAAAAG-ATTTTCATGCAAAACAAAACCATCAATATCATTTA
* * *
107125 TCCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
126 TCCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * * ** * ** *
107159 CCTGAAAAGAACGG-GAATTAGTGTGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTG
1 CTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTG
** *** * * * * * * * *
107221 ATTTTATCA-TTAACGGAGG-AAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTTA
63 ATTTTA--AGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTA
*
107284 TCCTAATGAAGGGAAAGTGTTTTTGGAT-CCTAAT
126 TCCTAATGAAGGGAAA-TGTTTATGG-TGCCTAAT
* * * *
107318 CTTGGAAAGAGTGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
*
107383 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* *
107448 ATG-AGGAGAATGTGTTTATAGTGCCTAAT
131 ATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * * * * * *
107477 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTC-TGTCTCATTTGAGGCACGAACTTGGA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATG-CATGTCTCATTTAAAGTACAAACTTTGA
* ** ** ** * * * *
107540 ATTTACA--AAAATTGGGGGGAA-AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTAT
64 TTTTA-AGGAAAA-TAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * *
107602 CCTTATG-AGAAGACTATGTTTATGGTGCCTAAT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
** ** ** * ** * *
107635 CCAGAAAAGAATGTG-GA-TTAGCATAAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAAATTT
1 CTTGAAAAGAATG-GAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTT
* ** * * * * * * * * ** *
107696 GATTCT-A--TCAATAACGGTGGAAAGACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATG
62 GATTTTAAGGAAAATAA--G-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATT
* * * *
107758 TATCCTAATGAAGGGAATGTGTTTTTGGT-TCTCAAG
124 TATCCTAATGAAGGGAA-ATGTTTATGGTGCCT-AAT
* * * *
107794 CTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGCAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
* * * * *
107859 TTAGGGAAAATGAGGCAAAGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCCTA
66 TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
* *
107924 ATG-AGGAGAATGTGTTTATAGTGCCTAAT
131 ATGAAGG-GAA-ATGTTTATGGTGCCTAAT
** * * * * * * * * * *
107953 CACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTC-TGTCTCATTTGAGGCACGAACTTGGA
1 CTTGAAAAGAATGGAGACT-TTTACGAGAATCAATG-CATGTCTCATTTAAAGTACAAACTTTGA
* ** ** * * * * * * * * * *
108016 ATTTACA--AAAATTTGTGGGAA-AATAGAGTTTCTTGC-GAGCCAAATCAACAATATCGTGTAT
64 TTTTA-AGGAAAATAAG-GCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTAT
* * * * * * *
108077 CTTTATG-AGAAGACTATTTTTACGGTTCCT-AT
127 CCTAATGAAG-GGA-AATGTTTATGGTGCCTAAT
* * * ** * *
108109 CTAGAAAAGAATGTG-GA-TTAGTATGA-ATATTCAA-GTTTATCTTATTTAAGAG-ACAAACTT
1 CTTGAAAAGAATG-GAGACTT-TTACGAGA-A-TCAATGCATGTCTCATTTAA-AGTACAAACTT
* ** * * * * * * * * * * *
108169 TGATTCT-ATCAATAACGATGG-AAAGACAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
61 TGATTTTAAGGAA-AA-TAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATT
* * * *
108232 TATCCTAATGAAAGGAATGTGTTTTTTGGT-TCTCAAT
124 TATCCTAATGAAGGGAA-ATG-TTTATGGTGCCT-AAT
* *
108269 CTTGAAAAGAATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATT
1 CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
* * *
108334 TTAAGGAAAATAAGGCACAA-AAAAGATTTCCATGCAAAAGAAAACTATCAATATCATTTATCCT
66 TTAAGGAAAATAAGGCA-AAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCT
* *
108398 -ATTAA-GGAGAATGAGTTTATAGTGCCTAAT
130 AATGAAGGGA-AAT--GTTTATGGTGCCTAAT
108428 C
1 C
108429 ACGAAATGAA
Statistics
Matches: 5385, Mismatches: 1757, Indels: 950
0.67 0.22 0.12
Matches are distributed among these distances:
154 7 0.00
155 56 0.01
156 164 0.03
157 321 0.06
158 1730 0.32
159 2311 0.43
160 641 0.12
161 30 0.01
162 38 0.01
163 48 0.01
164 1 0.00
165 5 0.00
166 26 0.00
167 7 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (158 bp):
CTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATT
TTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAACAAAACCATCAATATCATTTATCCTA
ATGAAGGGAAATGTTTATGGTGCCTAAT
Found at i:105026 original size:953 final size:950
Alignment explanation
Indices: 99296--108693 Score: 13149
Period size: 953 Copynumber: 9.8 Consensus size: 950
99286 ACAAACTTAT
* * * * **
99296 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGCTTATAATGCCTAATCATG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* * * *
99361 AAATGAAGGAAGATCCTTGCTAGAATCCATGTTTGTCTCATTTGATGCACGAACTTAGAATTTAC
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
* * ** * * *
99426 AAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCTTTATGAG
131 AAAAATTAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
* *
99491 AAGACCATGTTTATGGTGCCTAATCCTAAAAAGAATAG-GGATTAGTATGAGTATTCATATTTGT
196 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GTGGATTAGTATGAGTATTCATGTTTGT
* * * * * *
99555 CTTATTTAAGTGACAAACTTTGATTCCATCCA-TAATGGTAGAAAGAAAAGCTTCTCTTGCGACC
260 CTTATTTAAGAGACAAACTTTGATTCTAT-CATTAACGGTGGAAAGAAAAGCTTCTCTTGCAACA
*
99619 CCAAAGCATCAATGTCATGTATCCTAATGAAA-GAAATGTGTTTTTGGTTCCCAATCTTGAAAAG
324 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAA-GTGTTTTTGG-TCCTAATCTTGAAAAG
* * *
99683 ATTGGAGACTTTTACGAGACTCAATGCGTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
*
99748 ATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGA
452 ATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGA
* * * * *
99813 ATATGTTTATAGTGTCTAATCACGAAATGATTGAATATCCTTAGTAGAATCCATGTTTGTCTCAT
517 ATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCAT
* ** * * *
99878 TTGAGCCACGAACATAGAATTTACAAAAATTGACGGGAAAAAATCGTTTCTTGCAAAACCAAATC
582 TTGAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGC
* * * *
99943 ATCAATATCCTGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCTTGAAAAGAATGGGGA
647 ATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGA
* * * * *
100008 TTAGTATGAGTATTCATGTTAGTCTTATTTAGGAGATAAACTTTGATTTTATCTTTAACGGTGGA
712 TTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTGGA
* * * * *
100073 AAGAAAAGCTTCTCTTACGATACCAAAGCATCAATGTCATGTATCCTAATGAAGGTAATGTGTTT
777 AAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * * *
100138 TTAGTTCCCAATCTTGGAAAGAAAGGAGACTTTTACGAGAATCAATGCATGTCTC-ATTCAAAGT
842 TTGGTT-CCAATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATT-AAAAT
* * *
100202 ACAAACTTTGATTGTAAGGAAAATAATGCAAAGAAAAGATTTCCAGGAAAATAATGCAAAGAAAA
905 GCAAACTTTGA-T-T--------T--T---------AG-------GGAAAATGAGGCAAAGAAAA
100267 GATTTCCAG
942 GATTTCCAG
* * * * * * **
100276 GCAAAAGAAAACCATCAATATCATGTATCCGAATA-AGGAGAATGTGTTTATAGTGCCCAATTAC
1 GCAAAAGAAAACCATTAATATCATTTATCCTAA-AGAGGAGAAAGTGTTTATAATGCCTAATCCC
* * *
100340 GAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTAGAATTTA
65 GAAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTA
* * * *
100405 CAAAAATT-GTTGGAAAAAAAG-AGTTTCTTGC-AAAGCCAAATCAGCAAGATCCTGTATCTTTA
130 CAAAAATTAG-TGGGAAAAAAGCA-TTTCTTGCGAAA-CCAAATCATCAATATCCTGTATCCTTA
* * * *
100467 TGAGAAGACTATTTTTACGGTGCCTAATCC-AGAAAAGAATGTGGATTGGTATGAATATTCATGT
192 TGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGTGGATTAGTATGAGTATTCATGT
* * * * * **
100531 TTGTCTTAATTAAGAGACAAATTTTGATTCGATCAATAACGG-GGAAAGACAAGCTTCTCTTGTG
256 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCA
* * * * *
100595 ACACCAAAGCATCAATGTCAAGTATCCCAATGAAAGGAATGTGTTTTTGGTTCTCAAGCTTGAAA
321 ACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGGTCCT-AATCTTGAAA
* * *
100660 AGAATGGAGACATTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTAAAGGA
385 AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
* * * * *
100725 AAATAAGGCAAAGAAAAGATTTCCACGTAAAAGAAAACCATCAATATCATTTATCCTATTAAGGA
450 AAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGA
* *
100790 GAATATGTTTATAGTGCCTAATCACGAAATGAATGCAGATCCTTACTAGAATCCATGTTTGTCTC
515 GAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTC
* * * * *
100855 ATTTGAGGCATGAACATAGAATTTACAAAAATTAGGGGGAAAAAAGCATTTCCTACGAAACCAAA
580 ATTTGAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAA
* * * * * *
100920 TCATCAATAACCTTTATCCTAACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGA
645 GCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* * *
100985 AATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT-ATTTTATCATTATCGGTG
710 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTG
* * * *
101049 GAAAAAAAAGCTTTTCTTGCAACACCAAAGCCTCAATGTCATTTATCCTAATGAAGGGAAAGTGT
775 GAAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
* * * * *
101114 TTTTGGATCCTAATCTTGGAAAGAGTGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAG
840 TTTTGGTTCC-AATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAA
* * * * *
101179 TACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCAT
904 TGCAAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
* * ** * *
101226 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATCTGTTTATAGTGCCTAATCACG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* * * * * * *
101291 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAATATGAGGAATGAACTTATACTTTAC
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
* * * * * * *
101356 AAAAATTGGGGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAG
131 AAAAATTAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
* ** * *
101421 AAGACTATTTTTATGGTGCCTAATCCGGAAAAGAATGTGGATTAGCATAAGTATTCATGTTTGTC
196 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTC
* * * * *
101486 TTATTTAAGAGACAAACTTTGATTCTATCAGTAA--GTGGAAAGACAAGCTTTTCTTGCGATACC
261 TTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCAACACC
* * * * *
101549 AAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT-AAAACAAA
326 AAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGG-TCCTAATCTTGAAAA-GAA
* *
101613 TGGAGACTTTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
389 TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
* * * * ** *
101678 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGATT
454 AAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAAT
*
101743 GTGTTTATAGTGCTTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTT
519 GTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTT
* * ** * *
101808 GAGGCATGAACATAGAATTTACAGAAATTGATGGGAAAAAAGCGTTTCTTGCGAAACTAAATCAT
584 GAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCAT
* * * * *
101873 CAATATCCTGTATCCTTATGTGAGGACTATGTTTATGGTGCCCAATCCTGAAAAGAATGGGGATT
649 CAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
101938 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACA-TTGATTTTATCATTAACGGTGGAA
714 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA-ATTTGATTTTATCATTAACGGTGGAA
* * * **
102002 AAAAAAGCTTCTCTTACAACACCAAAGCATCAATGTCATTTATCCTAATGAAGGAAAACTGTTTT
778 AAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* * * * * * * **
102067 TGGATCCTAATCTTGGAAAGAGTGAAGACTTTTATGAGAATCAAGGCATGTCTTAATTAAAATAA
843 TGGTTCC-AATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGC
* *
102132 AAAATTTGATTTTAAGG-AAATGAGGCAAAGAAAAGATTTCCAG
907 AAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
* * *
102175 GCAAAAGAAAACAATTAATATCTTTTATCCTAATGAGGAGAAAGTGTTTATAATGCCTAATCCCG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* ** * *
102240 AAATGAAAGAAGATCCTTACTAGAATCCATGTCTGTCTTATTTGAGAAATGAACTTATACA-TTA
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGA-ATTTA
* * * * * * * *
102304 CAAAAATT-G-GGGCGAAAAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATGTATCCCTATA
130 CAAAAATTAGTGGG-AAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
* * *
102367 AGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGAGTATTTATGTTTA
194 AGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * *
102432 TCATATTTAAGAGACAAACTTTGATTCTATTAATAACGGTGGAAAGAAAGGCTTCTCTTG-AGAG
259 TCTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCA-AC
** *
102496 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTCTCAATCTTGAAAAG
323 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGGTCCT-AATCTTGAAAAG
* * * *
102561 AATGGAGACTTTTATGTGAATCAATGCATGTCTCAATTAAAATACAAACTTTGATTTTAAGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
* * * * **
102626 ATAAGACAAAGAAAAGA-TTTCATGCAAAAGAAAACCATCAATATCATGTATCGTGACAAGGAGA
452 ATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGA
* * * *
102690 TTGTGTTTATTGTGCCTAATCACGAAATGAATGAAGATTCTTACTAGAATCTATGTTTGTCTCAT
517 ATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCAT
* * ** *
102755 TTGAGGCACGAACATAGAATTTATAGAAATTGATGGGAAAAAAGCGTTTCTTGC-ATAACCAAAT
582 TTGAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGA-AACCAAAG
* * * *
102819 CATCAATATCCTGTATCCTTATGAGAAGACTATGTTTATGGAGCGTAATCCTGAAAAGAATGGGG
646 CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGG
*
102884 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTGG
711 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTGG
* **
102949 AAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAACTGTT
776 AAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTT
* ** *
103014 TTTGGATCCTAATCTTGGAAAGAGCGGAGACCTTTACGAGAATCAATGCTTGTCTCAATTAAAAT
841 TTTGGTTCC-AATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAAT
* *
103079 GAAAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCAAG
905 GCAAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
*
103125 GCAAAAGAAAACCATTAATACCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* * * * *
103190 AAATGAAAGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGAATGAACTTATACA-TTA
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGA-ATTTA
* * * * * * *
103254 CAAAAATTGGGGGGGGGGGAGGGAAAAAGCGTTTCTTGCGAATCCAAAGCATCATTATCATGTAT
130 CAAAAATT-----AGTGGGA---AAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTAT
* * *
103319 CCCTAT---TAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATGTGGATTAGTATGAGTATT-
187 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGGATTAGTATGAGTATTC
* * * *
103380 ATGTTTGTCTTATTTAAGAGACAAACTTTAATTCTATTAATAACGGTGGAAAGAAAGGCTTCTCT
252 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCT
* * ** **
103445 TGCGAGACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTTTCAATCTT
317 TGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGGTCCT-AATCTT
103510 GAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTT-AAGATACAAACTTTGATTTT
381 GAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAG-TACAAACTTTGATTTT
*
103574 AAGGAAAATAAGGCAAAGAAAAGATTTTCATGTAAAAGAAAACCATCAATATCATTTATCCTAAT
445 AAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
*
103639 GAGGAGAATCTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTT
510 GAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTT
* * * * * * *
103704 GTCTAATATGAGGAATGAACTTATACTTTACAAAAATTGGGGGG-AAAAAGCGTTTCTTGCG-AA
575 GTCTCATTTGAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAA
* * *
103767 CCTAAAGCATCAATA-CATTTATCCTTATGAGAAGACTATGTTTATAGAGCGTAATCCTGAAAAG
640 CC-AAAGCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* *
103831 AATGGGGATTAGTATGAGTATTCGTGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTA
704 AATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTA
*
103896 ACGGTGGAAAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTTATCCTAATGAAGGG
769 ACGGTGG-AAAAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
* * *
103961 AAAGTGTTTTTGGATCCTAATCTTGGAAAGAGTGGAGACCTTTACGAGAATCAATGCATGTCTCA
833 AATGTGTTTTTGGTTCC-AATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCA
*
104026 ATTAAAATGCAAACTTTGATTTTAGGGAAAATGAAGCAAAGAAAAGATTTCCAG
897 ATTAAAATGCAAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
104080 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* *
104145 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACAAACATAGAATTTAC
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
* * *
104210 AAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTATGAG
131 AAAAATTAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
104275 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATG-GGAATTAGTATGAGTATTCATGTTTGT
196 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGG-ATTAGTATGAGTATTCATGTTTGT
* * * *
104339 CTTCTTTAAGAGACAAACTTTGATTTTATCATTATCGGTGGAAAAAAAAGCTTCTCTTGCAACAC
260 CTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCAACAC
* *
104404 CAAAGCATCAATGTCATTTATCCTAAT-AAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAAGA
325 CAAAGCATCAATGTCATGTATCCTAATGAAA-GGAAAGTGTTTTTGG-TCCTAATCTTGAAAAGA
* * ** *
104468 GTGGAAACTTTTACGAGAATCAGGGCATGTCTCAATTAAAGTACAAACTTTGATTTTAAGGAAAA
388 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
104533 TAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAA
453 TAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAA
* * ** *
104598 TCTGTTTATAGTACCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCAAATA
518 TGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATT
* * * * * *
104663 TAAGGAATGAACTTATACTTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCA
583 TGAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCA
* * *
104728 TCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAAAATGTGGAT
648 TCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * *
104793 TAGCATAAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAA
713 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTGGAA
* * * * *
104858 AGACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTT
778 AAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* *
104923 TGGTTCTCAAGCTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATG
843 TGGTTC-CAATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCA-TGTCTCAATTAAAATG
* *
104988 CAAACTTTGATTTTAGGGAAAATGAGGCAAAAAAAAGATTTCCTG
906 CAAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
*
105033 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAGTCCCG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* * * *
105098 AAAAGAAAGAAGATCCTTACTAGAATCCATGTTTTTCGTATTTGAGGCACGAACATAGAATTTAC
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
* * *
105163 AAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTATGAG
131 AAAAATTAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
* * *
105228 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACG-GGAATTAGTGTGAGTATTCATGTTTGT
196 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGG-ATTAGTATGAGTATTCATGTTTGT
* * *
105292 CTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGAGGAAAAAAAAGCTTCTCTTGCAACAC
260 CTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCAACAC
* * * *
105357 CAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAAGAG
325 CAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGG-TCCTAATCTTGAAAAGAA
* *
105422 TGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGAAAAT
389 TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
105487 AAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAAT
454 AAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAAT
*
105552 GTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTT
519 GTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTT
* *
105617 GAGGCACGAACTTGGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCAT
584 GAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCAT
* *
105682 CAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATT
649 CAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * *
105747 AGCATAAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAAA
714 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTGGAAA
* * * * *
105812 GACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTT
779 AAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* *
105877 GGTTCTCAAGCTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATGC
844 GGTTC-CAATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCA-TGTCTCAATTAAAATGC
*
105942 AAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCTG
907 AAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
*
105986 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAGTCCCG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* * * *
106051 AAAAGAAAGAAGATCCTTACTAGAATCCATGTTTTTCGTATTTGAGGCACGAACATAGAATTTAC
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
* * *
106116 AAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTATGAG
131 AAAAATTAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
* * *
106181 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACG-GGAATTAGTGTGAGTATTCATGTTTGT
196 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGG-ATTAGTATGAGTATTCATGTTTGT
* * *
106245 CTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGAGGAAAAAAAAAGCTTCTCTTGCAACA
260 CTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGG-AAAGAAAAGCTTCTCTTGCAACA
* * *
106310 CCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAAGA
324 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGG-TCCTAATCTTGAAAAGA
* * *
106375 GTGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGAAAA
388 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAA
106440 TAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAA
453 TAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAA
*
106505 TGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATT
518 TGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATT
* *
106570 TGAGGCACGAACTTGGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCA
583 TGAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCA
* *
106635 TCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGAT
648 TCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGAT
* * * *
106700 TAGCATAAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAA
713 TAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTGGAA
* * * * *
106765 AGACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTT
778 AAAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT
* *
106830 TGGTTCTCAAGCTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATTGTCTCAATTAAAATG
843 TGGTTC-CAATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCA-TGTCTCAATTAAAATG
*
106895 CAAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCTG
906 CAAACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
*
106940 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAGTCCCG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* * * *
107005 AAAAGAAAGAAGATCCTTACTAGAATCCATGTTTTTCGTATTTGAGGCACGAACATAGAATTTAC
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
* * *
107070 AAAAATTAGTGGGAAAAAAGCATTTCTTGCTAAACGAAATCATCAATATCCTTTATCCTTATGAG
131 AAAAATTAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
* * *
107135 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAACG-GGAATTAGTGTGAGTATTCATGTTTGT
196 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGG-ATTAGTATGAGTATTCATGTTTGT
* * *
107199 CTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGAGGAAAAAAAAGCTTCTCTTGCAACAC
260 CTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCAACAC
* * * *
107264 CAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAAGAG
325 CAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGG-TCCTAATCTTGAAAAGAA
* *
107329 TGGAGGCTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGAAAAT
389 TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
107394 AAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAAT
454 AAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAAT
*
107459 GTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTT
519 GTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTT
* *
107524 GAGGCACGAACTTGGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCAT
584 GAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCAT
* *
107589 CAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATT
649 CAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
* * * *
107654 AGCATAAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTCTATCAATAACGGTGGAAA
714 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTGGAAA
* * * * *
107719 GACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTT
779 AAAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
* *
107784 GGTTCTCAAGCTTGAAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGCA
844 GGTTC-CAATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGCA
107849 AACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
908 AACTTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
* * * * *
107892 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACG
1 GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
* * * *
107957 AAATGAATGAAGATCCTTACTAGAATCCATGTCTGTCTCATTTGAGGCACGAACTTGGAATTTAC
66 AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
* * * * * *
108022 AAAAATTTGTGGGAAAATAG-AGTTTCTTGCG-AGCCAAATCAACAATATCGTGTATCTTTATGA
131 AAAAATTAGTGGGAAAAAAGCA-TTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGA
* * * * * *
108085 GAAGACTATTTTTACGGTTCCT-AT-CTAGAAAAGAATGTGGATTAGTATGAATATTCAAGTTTA
195 GAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGTGGATTAGTATGAGTATTCATGTTTG
* * * * *
108148 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTTTTCTTGCGACA
259 TCTTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCAACA
* *
108213 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTTGGTTCTCAATCTTGAAAAG
324 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTG-TTTTTGGTCCT-AATCTTGAAAAG
* *
108278 AATGGAAACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAA
* * * *
108343 ATAAGGCACAA-AAAAGATTTCCATGCAAAAGAAAACTATCAATATCATTTATCCTATTAAGGAG
452 ATAAGGCA-AAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAG
* *
108407 AATGAGTTTATAGTGCCTAATCACGAAATGAATGCAA-ATCCTTACAAGAATCCATGTTTGTCTC
516 AATGTGTTTATAGTGCCTAATCACGAAATGAATG-AAGATCCTTACTAGAATCCATGTTTGTCTC
** * *
108471 ATTTGAGGCACGAACATAGAATTTACAAAAATCAGTGGGAAAAAAGCATTTCTTGCGAAACCAAA
580 ATTTGAGGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAA
* *
108536 TCATCAATAAC-TTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
645 GCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
* * *
108600 AATTAGTATGAGTATTGATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAACGGTG
710 GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTG
108665 GAAAAAAAAGCTTCTCTTGCAACACCAAA
775 GAAAAAAAAGCTTCTCTTGCAACACCAAA
108694 CTTTGATTTA
Statistics
Matches: 7846, Mismatches: 502, Indels: 170
0.92 0.06 0.02
Matches are distributed among these distances:
947 42 0.01
948 141 0.02
949 982 0.13
950 1054 0.13
951 649 0.08
952 342 0.04
953 1981 0.25
954 1079 0.14
955 528 0.07
956 182 0.02
957 4 0.00
959 48 0.01
966 1 0.00
968 1 0.00
976 1 0.00
977 3 0.00
978 140 0.02
979 413 0.05
980 255 0.03
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (950 bp):
GCAAAAGAAAACCATTAATATCATTTATCCTAAAGAGGAGAAAGTGTTTATAATGCCTAATCCCG
AAATGAAAGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTAC
AAAAATTAGTGGGAAAAAAGCATTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCAACACC
AAAGCATCAATGTCATGTATCCTAATGAAAGGAAAGTGTTTTTGGTCCTAATCTTGAAAAGAATG
GAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAA
GGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGT
GTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGA
GGCACGAACATAGAATTTACAAAAATTGGGGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCA
ATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG
TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAATTTGATTTTATCATTAACGGTGGAAAAA
AAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG
TTCCAATCTTGGAAAGAATGGAGACCTTTACGAGAATCAATGCATGTCTCAATTAAAATGCAAAC
TTTGATTTTAGGGAAAATGAGGCAAAGAAAAGATTTCCAG
Found at i:109597 original size:476 final size:474
Alignment explanation
Indices: 108700--111593 Score: 3786
Period size: 476 Copynumber: 6.1 Consensus size: 474
108690 CAAACTTTGA
* * * * *
108700 TTTAAGAGAATCAATGCATGTCTTAATTAAAATACAAACTTTGATTTTAAGGAAAATGAGGCAAA
1 TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
* * * * * *
108765 GAAAAGATTTCCAAGCAAAAGAAACCCATTAATATCATTTATCCTAATGAGGAGAAAGTGTTTAT
66 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTAT
* * * * * *
108830 AATGCCTAATCCCGAAATGAAAGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGAATG
131 AGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
108895 AACTTA-TATATTACAAAAATTGGGGGGAAAAAAGCATTTCTTGCGAATCCAAAGCATCATTATC
196 AACTTAGAAT-TTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATC
* * * * * * *
108959 AGGTATCCTTCTGAGAAGACTATGTTTATGGTGGCTAATCCAAAAAAGAATGTAGATTTGTATGA
260 ATGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGA
*
109024 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATTAATAACGGTGGAAAGA-AAGG
325 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAA-G
* * *
109088 CTTCTCTTGCGAGACCAAAGTATCAATGTCATGTATCCTAATGAAAGGAATTTGTTTTTGGTTCT
389 CTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTC-
109153 CCATCTTGAAAAGAATGGAGACT
453 CCATCTT-AAAAGAATGGAGACT
* * *
109176 TTTATGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAGTAAGGCAAA
1 TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
* * * * *
109241 GAAAAGATTTACATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAGTCTGTTTAT
66 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTAT
* * * * *
109306 AGTGCCTAATCACGAAATGAATGAAGATGCTTACTAGAATCCATATTTGTCTAATTTGAGGAATG
131 AGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * * *
109371 AACTTATACTTTACAAAAATTGGGGGGAAGAAAGTGTTTCTTGCAAAACCAAAGCATCAATATCA
196 AACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * * * *
109436 TTTATCCTTATGAGAACACTATGTTTACGGTGTCTTATACAGAAAAGAATGTGGATTAGTATGAG
261 TGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAG
*
109501 TATTCATGTTTGTCTTAATTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
326 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
* * *
109566 TTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCA
391 TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCC-
109631 ATCTTAAAACGAATGGAGACT
455 ATCTTAAAA-GAATGGAGACT
* * *
109652 TTTGCAAGAATCAATGCATGTCTCATTTAAAGTACAATCTTTGATTTTAAGGAAAATAAGGCAAA
1 TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
* * * * ** * *
109717 GAAAAGATTTCCTTGCAAAAGAAAACCATCAATATCATGCATCGTGACAAGGAGATTGTGTTTAT
66 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTAT
* * * * **
109782 AGTCCCTAATCACGAAATAAATGAAGATCCTTGCTAGAATCTATGTTTGTCTCATTTGAGGCATA
131 AGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * ** ** * *
109847 AACATAGAATTTACAGAAATTAATGGGAAAAAAAAGTTTCTTGCGAAACCAAATCATCAATATCC
196 AACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * *
109912 TGTATCCTTATGAGAAGACTATGTTT-CTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGA
261 TGTATCCTTATGAGAAGACTATGTTTAC-GGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGA
* *** * *
109976 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTGTATTGTTAACGGTGGAAAAAAAAGC
325 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGC
* * * * *
110041 TTCTCTTGCAACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTGGATCCT
390 TTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCC-
* * *
110106 AATCTTGGAAAGAATGGATACT
454 CATCTT-AAAAGAATGGAGACT
* * *
110128 TTTACGAGAATCAATGCATGTCTCAATTAAAATACAAACTTTGATTTTAAGGAAAATGAGGCAAA
1 TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
*
110193 GAAAAGATTTCCACGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTAT
66 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTAT
* * *
110258 AGTGCCTAATCCCGAAATGAATGAAGATCCTTACTAGGATTCATGTTTGTCTCA-TT--GGCACG
131 AGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* ** * * *
110320 AACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGTAAAACCAGATCATCAATATCC
196 AACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * *
110385 TGTATCCTTATGAGAAGGCTATTTTTACGGTGTCTAATCCAGAAAAG-ATGGTGGATTAGTATGA
261 TGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAAT-GTGGATTAGTATGA
* * *
110449 GTATTCATGTTTATCTTATTTAACAGACAATCTTTGATTCTATCAATAACGG-GAGAAAGACAAG
325 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTG-GAAAGACAAG
* * *
110513 CTTCTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAAGACTGTGTTTTTGGTTCC
389 CTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCC
* *
110578 TAGTCTTAAAAGGAATGAAGACT
454 CA-TCTTAAAA-GAATGGAGACT
* * * * *
110601 TTTACAAGAATCAATGCATGTCTCATTTAAAGTATAAAATTTGATTTTAAGGGAAATAAGGCGAA
1 TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
*
110666 GAAAAGATTTCCACT-CAAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAATGTATTTA
66 GAAAAGATTTCCA-TGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTA
* * *
110730 TAGTGCCTAATCCCGAAATAAATGAAGATCCTTACTAGAATTCATGTTTGTCTCATTTGAGGCAC
130 TAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* * * * *
110795 GAACTTAGAATTTACAAAAATTGGTGGG-AAAAATCTGTTTCTAGCTAAACCAAATCATCAATGT
195 GAACTTAGAATTTACAAAAATTGGTGGGAAAAAAGC-GTTTCTTGCGAAACCAAAGCATCAATAT
* *
110859 CCA-GTATCCTTATGAGAAGACTGTGTTTATGGTGCCTAATCCTA-AAAAGAATG-GGTATTAGT
259 -CATGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCC-AGAAAAGAATGTGG-ATTAGT
* * ** * * * *
110921 ACGAATATTCATGTTTGTCTTATTTAAGAGATGAACTTTGATTTTATCATTAACAGTGGAAAGAA
321 ATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAC
* *
110986 AAGCTTCTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AAGAGAATGTGTTTTTGG
386 AAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGG
* * *
111050 ATCCTAATCTTGAAAAGATTGGAGACT
450 TTCC-CATCTT-AAAAGAATGGAGACT
* *
111077 TTTGCGAGATTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
1 TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
* *
111142 GAAAAGATTTCCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTATTTAT
66 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTAT
*
111207 AGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCACGTTTGTCTCATTTGAGGCACG
131 AGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * ** * *
111272 AGCTTATATTTTACAAAAATTGGCCGGAAGAAAGCGTTTCTTGCGAAACCAAAGAATCAATATCA
196 AACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * * *
111337 TTTATCCTTATGAGAAGACTATGTTTATGCTACCTAATCCAGAAAAGAATGTGGATTAGTATGAG
261 TGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAG
* * * * *
111402 TATACATATTTGCCTTATTTAAGAGACAAACTTTGATTCCATCAATAACGGTGGGAAGACAAGCT
326 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
* * * * *
111467 TCTCTTAC-AGCACCAAAGCAACATTGCCATGTATCCTAAT-AAAGGAAATATGTTTTTTGGTTT
391 TCTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAAGG-AATGTG-TTTTTGG-TT
*
111530 CCAATCTTAAAAGAATGGAGACT
452 CCCATCTTAAAAGAATGGAGACT
* *
111553 TTTACAAGAATCAATGCATGTCTCACTTAAAGTACAAACTT
1 TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTT
111594 ATGCAAAAGA
Statistics
Matches: 2114, Mismatches: 269, Indels: 70
0.86 0.11 0.03
Matches are distributed among these distances:
472 7 0.00
473 406 0.19
474 3 0.00
475 25 0.01
476 1634 0.77
477 36 0.02
478 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
TTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAA
GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTAT
AGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
AACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
TGTATCCTTATGAGAAGACTATGTTTACGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAG
TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
TCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCA
TCTTAAAAGAATGGAGACT
Found at i:111056 original size:159 final size:157
Alignment explanation
Indices: 108924--111439 Score: 580
Period size: 159 Copynumber: 15.9 Consensus size: 157
108914 TTGGGGGGAA
* * * * ** * * *
108924 AAAAGCATTTCTTGCGAATCCAAAGCATCATTATCAGGTATCCTTCTG-AGAAGACTATGTTTAT
1 AAAAGC-TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTTT
* * * * * * *
108988 GGTGGCTAATCCAAAAAAGAATGTAG-ATTTGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
64 GGTGCCTAATCCTAAAAAGAATG-GGTATTAGTACGAATATTCATGTTTGTCTCATTTAAGAGAC
* * **
109052 AAACTTTGATTCTATTAATAACGGTGGAAAG
128 AAACTTTGATTTTA-CAATAAAAGTGGAAAG
* * * * * *
109083 AAAGGCTTCTCTTGCGAGACCAAAGTATCAATGTCATGTATCCTAATGAA-AGGAATTTGTTTTT
1 AAAAGCTT-TCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGA-GAATGTGTTTTT
* * * * * * ** *
109147 GGT-TCTCCATCTTGAAAAGAATGGAG-ACTT-TTATGAGA-A-TCAATGCATGTCTCATTTAAA
64 GGTGCCT-AATCCTAAAAAGAATGG-GTA-TTAGTACGA-ATATTC-ATGTTTGTCTCATTTAAG
* **
109207 ATACAAACTTTGATTTT--AAGGAAAGTAAGGCAAAG
124 AGACAAACTTTGATTTTACAATAAAAGT--GG-AAAG
* * ** * * * * * * *
109242 AAAAGATTTACATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAGTCTGTTTATA
1 AAAAGCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
* * * * * * * * *
109307 GTGCCTAATCAC-GAAATGAATGAAGATGCTTACTA-G-A-ATCCATATTTGTCTAATTTGAG-G
65 GTGCCTAATC-CTAAAAAGAATG--GGT-ATTAGTACGAATATTCATGTTTGTCTCATTTAAGAG
* * * *
109367 A-ATGAACTTAT-ACTTTACAA-AAATTGGGGGGAAG
126 ACA--AACTT-TGATTTTACAATAAA--AGTGGAAAG
* * * * *
109401 -AAAGTGTTTCTTGCAAAACCAAAGCATCAATATCATTTATCCTTATG-AGA-ACACTATGTTTA
1 AAAAG-CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGA-A-TGTGTTTT
* * * * * * * *
109463 CGGTGTCTTATAC-AGAAAAGAATGTGG-ATTAGTATGAGTATTCATGTTTGTCTTAATTAAGAG
63 TGGTGCCTAATCCTA-AAAAGAATG-GGTATTAGTACGAATATTCATGTTTGTCTCATTTAAGAG
* **
109526 ACAAACTTTGATTCTATCAATAACGGTGGAAAG
126 ACAAACTTTGATTTTA-CAATAAAAGTGGAAAG
* * * ** *
109559 ACAAGCTTTTCTTGCGACACCAAAGCATCAACGTCATGTATCCTAATGAAGGGAATGTGTTTTTG
1 AAAAGC-TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
* * * * * * * * **
109624 GTTCCCAATCTTAAAACGAATGGAG-ACTT-TTGC-AAGAATCAATGCATGTCTCATTTAA-AGT
65 GTGCCTAATCCTAAAAAGAATGG-GTA-TTAGTACGAATATTC-ATGTTTGTCTCATTTAAGAG-
* * *
109685 ACAATCTTTGATTTTA-AGGAAAATAAG-GCAAAG
126 ACAAACTTTGATTTTACA--ATAA-AAGTGGAAAG
* ** * * * * * * *
109718 AAAAGATTTCCTTGCAAAAGAAAACCATCAATATCATGCATCGTGA-CAAGGAGATTGTGTTTAT
1 AAAAGCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAA-GAGAATGTGTTTTT
* * * * * * * *
109782 AGTCCCTAATCACGAAATA-AATGAAG-ATCCTTGCTA-GAAT-CT-ATGTTTGTCTCATTTGAG
64 GGTGCCTAATC-CTAAAAAGAATG-GGTAT--TAG-TACGAATATTCATGTTTGTCTCATTTAAG
* * * * *
109842 -GCATAAACATAGAATTTACAGA-AATTAA-TGGGAAAA
124 AG-ACAAACTTTGATTTTACA-ATAA--AAGT-GGAAAG
* * * * * * *
109878 AAAAG-TTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG-AGAAGACTATGTTTCTG
1 AAAAGCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTTTG
* * * *
109941 GTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGTATTCATGTTTGTCTTATTTAAGAGACAA
65 GTGCCTAATCCTAAAAAGAATGGGTATTAGTACGAATATTCATGTTTGTCTCATTTAAGAGACAA
* *** ** *
110006 ACTTTGATTGTATTGTTAACGGTGGAAAA
130 ACTTTGATTTTA-CAATAAAAGTGGAAAG
* * * * *
110035 AAAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGAAAGTGTTTTTG
1 AAAAGCTT-TCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
* ** * * ** * * *
110100 GAT-CCTAATCTTGGAAAGAATGGATACTT-TTACGAGA-A-TCAATGCATGTCTCAATTAAAAT
65 G-TGCCTAATCCTAAAAAGAATGGGTA-TTAGTACGA-ATATTC-ATGTTTGTCTCATTTAAGAG
** *
110161 ACAAACTTTGATTTTA-AGGAAAATGAGGCAAAG
126 ACAAACTTTGATTTTACAATAAAA-GTGG-AAAG
* ** ** * * * * *
110194 AAAAGATTTCCACGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTATTTATA
1 AAAAGCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
** * * *** * **
110259 GTGCCTAATCCCGAAATGAATGAAG-ATCCTTACTAGGATTCATGTTTGTCTCA-TT--G-GCAC
65 GTGCCTAATCCTAAAAAGAATG-GGTATTAGTACGAATATTCATGTTTGTCTCATTTAAGAG-AC
* * * * *
110319 GAACTTAGAATTTACAA-AAATTGGTGGGAA-
128 AAACTTTGATTTTACAATAAA--AGTGGAAAG
* * * * * * *
110349 AAAAGCCTTTCTTGTAAAACCAGATCATCAATATCCTGTATCCT--T-ATGAGAAGGCTATTTTT
1 AAAAG-CTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATG-TGTTTTT
* * * * * * *
110411 ACGGTGTCTAATCC-AGAAAAG-ATGGTGGATTAGTATGAGTATTCATGTTTATCTTATTTAACA
64 --GGTGCCTAATCCTA-AAAAGAATGG-GTATTAGTACGAATATTCATGTTTGTCTCATTTAAGA
* * * *
110474 GACAATCTTTGATTCTATCAAT-AACGGGAGAAAG
125 GACAAACTTTGATTTTA-CAATAAAAGTG-GAAAG
* * * * * * *
110508 ACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAAGACTGTGTTTTTG
1 AAAAGCTT-TCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
* * * * * * * * **
110573 GTTCCTAGTCTTAAAAGGAATGAAG-ACTT-TTAC-AAGAATCAATGCATGTCTCATTTAA-AGT
65 GTGCCTAATCCTAAAAAGAATG-GGTA-TTAGTACGAATATTC-ATGTTTGTCTCATTTAAGAG-
* *
110634 ATAAAATTTGATTTTA-AGGGA-AATAAG-GCG-AAG
126 ACAAACTTTGATTTTACA---ATAA-AAGTG-GAAAG
* * ** * * * * *
110667 AAAAGATTTCCACT-CAAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAATGTATTTAT
1 AAAAGCTTT-C-TTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTT
* * * * * * *
110731 AGTGCCTAATCCCGAAATA-AATGAAGATCCTTACTA-G-A-ATTCATGTTTGTCTCATTTGAG-
64 GGTGCCTAAT-CCTAAAAAGAATG--GGT-ATTAGTACGAATATTCATGTTTGTCTCATTTAAGA
* * * * *
110791 GCACGAACTTAGAATTTACAA-AAATTGGTGG-GA-
125 G-ACAAACTTTGATTTTACAATAAA--AGTGGAAAG
* * * * * * *
110824 AAAATCTGTTTCTAGCTAAACCAAATCATCAATGTCCA-GTATCCTTATG-AGAAGACTGTGTTT
1 AAAAGC--TTTCTTGCAAAACCAAAGCATCAATAT-CATGTATCCTAATGAAG-AGAATGTGTTT
* *
110887 ATGGTGCCTAATCCTAAAAAGAATGGGTATTAGTACGAATATTCATGTTTGTCTTATTTAAGAGA
62 TTGGTGCCTAATCCTAAAAAGAATGGGTATTAGTACGAATATTCATGTTTGTCTCATTTAAGAGA
** * *
110952 TGAACTTTGATTTTATCATTAACAGTGGAAAG
127 CAAACTTTGATTTTA-CAATAAAAGTGGAAAG
*
110984 AAAAGCTTCTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
1 AAAAGCTT-TCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
* * * * * * **
111049 GAT-CCTAATCTTGAAAAGATTGGAG-ACTT-TTGCG-AGATTCAATGCATGTCTCATTTAA-AG
65 G-TGCCTAATCCTAAAAAGAATGG-GTA-TTAGTACGAATATTC-ATGTTTGTCTCATTTAAGAG
* *
111109 TACAAACTTTGATTTTA-AGGAAAATAAG-GCAAAG
126 -ACAAACTTTGATTTTACA--ATAA-AAGTGGAAAG
* * ** * * * * * * *
111143 AAAAGATTTCCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTATTTATA
1 AAAAGCTTT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTG
* * * * * * * *
111208 GTGCCTAATCAC-GAAATGAATGAAGATCCTTACTA-G-A-ATCCACGTTTGTCTCATTTGAG-G
65 GTGCCTAATC-CTAAAAAGAATG--GGT-ATTAGTACGAATATTCATGTTTGTCTCATTTAAGAG
* * * *
111268 CACGAGCTTAT-ATTTTAC-A-AAAATTGGCCGGAAG
126 -ACAAACTT-TGATTTTACAATAAAAGT-G--GAAAG
* * * * * * *
111302 -AAAGCGTTTCTTGCGAAACCAAAGAATCAATATCATTTATCCTTATG-AGAAGACTATGTTTAT
1 AAAAGC-TTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAG-AGAATGTGTTTTT
* * * * * * * *
111365 GCTACCTAATCC-AGAAAAGAATGTGG-ATTAGTATGAGTATACATATTTGCCTTATTTAAGAGA
64 GGTGCCTAATCCTA-AAAAGAATG-GGTATTAGTACGAATATTCATGTTTGTCTCATTTAAGAGA
111428 CAAACTTTGATT
127 CAAACTTTGATT
111440 CCATCAATAA
Statistics
Matches: 1679, Mismatches: 491, Indels: 375
0.66 0.19 0.15
Matches are distributed among these distances:
152 7 0.00
153 7 0.00
154 4 0.00
155 84 0.05
156 42 0.03
157 56 0.03
158 424 0.25
159 933 0.56
160 83 0.05
161 25 0.01
162 14 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
AAAAGCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTTGG
TGCCTAATCCTAAAAAGAATGGGTATTAGTACGAATATTCATGTTTGTCTCATTTAAGAGACAAA
CTTTGATTTTACAATAAAAGTGGAAAG
Found at i:113671 original size:158 final size:159
Alignment explanation
Indices: 113448--115578 Score: 936
Period size: 159 Copynumber: 13.4 Consensus size: 159
113438 AAAATAAAGC
* * * * * *
113448 AAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGTGTT
1 AAAGAAAAGATTTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTT
* * * * *
113513 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAGGC
66 TATGGTGCCTAATCACGAAAAGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTAAAGC
*
113578 ACGAACTTAGAATTTACAAAAATTGGTGG
131 ACAAACTTAGAATTTACAAAAATTGGTGG
* * ** * *
113607 GAAG-AAAG-TGTTTCTTACGAAAGCAAAGCATCAATATCATTTATCCTTGTGAGAAGACTATGT
1 AAAGAAAAGAT-TTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGT
* *** * * *
113670 TTATGGTGCCTAATC-CGGAAAAGAATTG-GGATTAGTA-TGAGTATTCATGTTTGTCTTATTTA
65 TTATGGTGCCTAATCAC-GAAAAGAA-TGAAGATCCTTACT-AGAATCCATGTTTGTCTCATTT-
* * * * * *
113732 AAAG-ACAAACTTTGACTCTATCAATAA-CGGTAG
126 AAAGCACAAACTTAGAATTTA-CAAAAATTGGTGG
* * * * * * *
113765 AAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAG-AGAATGTGTT
1 AAAGAAAAGATTTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTT
* * * ** * * * * * *
113829 TTTGGTTCCCAATCTTGAAAAGATTGGAGA-CTTTTACGAGAATCAATGCTTGTCTCATTTAAAG
66 TATGGTGCCTAATCACGAAAAGAATGAAGATC-CTTACTAGAATCCATGTTTGTCTCATTTAAAG
* * * ** *
113893 TACAAACCTT-GATTTTAAGAAAAATAAG-GC
130 CACAAA-CTTAGAATTT-ACAAAAATTGGTGG
* * * * * *
113923 AAAGAAAAGATTTTCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTT
1 AAAGAAAAGATTTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTT
* * * * * *
113988 TATAGTGCCTAATCATGAAATGAAGGAGGATCCTTACTAGAATCCATGTTTGTCTCATTTAAGGC
66 TATGGTGCCTAATCACGAAAAGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTAAAGC
* * *
114053 ACGAACATAGAATTTACAAAAATTTGTGG
131 ACAAACTTAGAATTTACAAAAATTGGTGG
* * * * * *
114082 GAAG-AAAG-TGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGT
1 AAAGAAAAGAT-TTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGT
*** * * *
114145 TTATGGTGCCTAATC-CTGAAAAGAAT-AAGGATTAGTA-TGAGTATTCATGTTTGTCTTATTT-
65 TTATGGTGCCTAATCAC-GAAAAGAATGAA-GATCCTTACT-AGAATCCATGTTTGTCTCATTTA
* * * * * *
114206 AAGTGACAAACTTTG-ATTCTATCCATAA-CGGTAG
127 AAG-CACAAACTTAGAATT-TA-CAAAAATTGGTGG
* *** * * * * * * *
114240 AAAGAAAAGCTTCTT-TTGCGACCCCAAAGCATTAATGTCATGTATCCTAATGAAAAAAATTTAT
1 AAAGAAAAGATT-TTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGT
* * * * ** * * * * * **
114304 TTTTGGTTCCCAGTCTTGAAAAGATTGGAGA-CTTTTACAAGAATCAATGCATGTCTCATTTAAA
65 TTATGGTGCCTAATCACGAAAAGAATGAAGATC-CTTACTAGAATCCATGTTTGTCTCATTTAAA
* * * * ** *
114368 GTACAAATTTTGATTTTA-AGGAAAATAAG-GC
129 GCACAAACTTAGAATTTACA--AAAATTGGTGG
* * * * **
114399 AAAGAAAAGATTTCCATGC-AAA-AAAAGCCATAAATATCATTTATCCTAATGAGGGGAATGTGT
1 AAAGAAAAGATTTTCTTGCGAAAGCAAAG-CATCAATATCATTTATCCTAATGAGAAGAATGTGT
* * * **
114462 TTGTAGTGCCTAATCATGAAATA-AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGGA
65 TTATGGTGCCTAATCACGAAA-AGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTAAA
* * * *
114526 GCACGAACATCGAATTTACAAAAATTGATGG
129 GCACAAACTTAGAATTTACAAAAATTGGTGG
* * * * * * * *
114557 ---GAAAAAATGTTTCTTGCAAAACCAAATCATCAATATCCTGTATCCCT-ATGAGAAGACTATG
1 AAAGAAAAGAT-TTTCTTGCGAAAGCAAAGCATCAATATCATTTAT-CCTAATGAGAAGAATGTG
* ** *** * * * *
114618 TTTATGGTACCTAATC-CTGAAAAGAATGGGGATTAGTA-TGAGTATTCATGTTTGTTTTATTTA
64 TTTATGGTGCCTAATCAC-GAAAAGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCATTTA
* * * ** **
114681 AGAG-ATAAACTTTGATTTTATCATTAA-CAGTGG
127 A-AGCACAAACTTAGAATTTA-CAAAAATTGGTGG
* * * * * * * * *
114714 AAAGAAAAGCTTTTTTTACGACA-CAAAAGCATCAATGTCATGTGTCCTAATGA-AGGGAAAGTG
1 AAAGAAAAGATTTTCTTGCGAAAGC-AAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTG
* ** * * * * **
114777 TTTTTGGAT-CCTAATCTTGGAAAGAGTG--GAGCCTTTTACTTGAAT-CATTGCATGTCTCATT
64 TTTATGG-TGCCTAATCACGAAAAGAATGAAGATCC--TTACTAGAATCCA-TGTTTGTCTCATT
* * * * *
114838 TAAAGTACAAACTTTGATTTTAAGAAAAATAT-G-GC
125 TAAAGCACAAACTTAGAATTT-ACAAAAAT-TGGTGG
* * * *
114873 AAAGAAAAGATTTCCATGCAAAAG-AAAACTATCAATATCATTTATCCTAATGA-AGAGAATGTG
1 AAAGAAAAGATTTTCTTGCGAAAGCAAAGC-ATCAATATCATTTATCCTAATGAGA-AGAATGTG
* * * * * *
114936 TTTATAGTGCCTAATCACGAAATGAATGATGATCCTTACTAGAATCCATGTTTATCTCATTTGAG
64 TTTATGGTGCCTAATCACGAAAAGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTAAA
*
115001 GCACAAATTTAGAATTTACAAAAATTGGTGG
129 GCACAAACTTAGAATTTACAAAAATTGGTGG
** * * *
115032 GGAG-AAAG-TGTTTCTTGCGAAACCAAAGCATCAATATCATGTATATAAGCCTTATGAGAAGAC
1 AAAGAAAAGAT-TTTCTTGCGAAAGCAAAGCATCAATATCAT-T-TAT---CCTAATGAGAAGAA
* * * * ** *** * * *
115095 TATGTCTATGGTGCCTAATCCCGAAAAAAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTTAT
60 TGTGTTTATGGTGCCTAATCACGAAAAGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCAT
* * * * * *
115159 TT-AAGTGACAAACTTTG-ATTCTATCCATAA-CGGTAG
124 TTAAAG-CACAAACTTAGAATT-TA-CAAAAATTGGTGG
* * *** * * * * *
115195 AAAGAAAAGCTTCTCTTGCGACCCCAATGCATCAATGTCATGTATCCTAATGA-ATGGAATGCGT
1 AAAGAAAAGATTTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGA-AGAATGTGT
* * * ** * * * ** * ** *
115259 TTTTGGTTCCCAATCTTGAAATGATTGGAGATTTTTA-TGAGAATCAATGCATGTCTCATTTAAT
65 TTATGGTGCCTAATCACGAAAAGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCATTTAAA
* * * * *
115323 GTACAAACTTTGATTTTA-AGGAAAATAGG-GC
129 GCACAAACTTAGAATTTACA--AAAATTGGTGG
** * * * * * ** * * *
115354 AAAGAAAATTTTTTCATGCTAAAGAAAACCATAAATATCATGCATCCTGATGAGGAGATTGTGTT
1 AAAGAAAAGATTTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTT
* * * *
115419 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGC
66 TATGGTGCCTAATCACGAAAAGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTAAAGC
** * * *
115484 ATGAACATGGAATTTACAAAAATTGATGG
131 ACAAACTTAGAATTTACAAAAATTGGTGG
* * * * * * *
115513 GAA-AAAA-ATGTTTCTTGCGAAACCAAATCATCAATATCCTTTATCCTTATGAGAAGACTATGT
1 AAAGAAAAGAT-TTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGT
115576 TTA
65 TTA
115579 CGATTCTTAA
Statistics
Matches: 1427, Mismatches: 442, Indels: 207
0.69 0.21 0.10
Matches are distributed among these distances:
155 7 0.00
156 8 0.01
157 115 0.08
158 527 0.37
159 612 0.43
160 35 0.02
161 4 0.00
162 9 0.01
163 75 0.05
164 34 0.02
165 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (159 bp):
AAAGAAAAGATTTTCTTGCGAAAGCAAAGCATCAATATCATTTATCCTAATGAGAAGAATGTGTT
TATGGTGCCTAATCACGAAAAGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTAAAGC
ACAAACTTAGAATTTACAAAAATTGGTGG
Found at i:113981 original size:475 final size:476
Alignment explanation
Indices: 113076--115851 Score: 3870
Period size: 475 Copynumber: 5.8 Consensus size: 476
113066 TGCGTTTATT
* * * *
113076 CTAGAATCCAAGTTTGTCTCATTTGGGGCACGAAC-TAGGAATTTACAAAAATTGGTAGGAAAAA
1 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATA-GAATTTACAAAAATTGGTGGGAAGAA
* * * * * * *
113140 AGCGTTTCTTGCGAAACTAAATCATCATTCTC-TTGTATCCGTATGAGAAGACTATGTTTAGGGT
65 AGTGTTTCTTGCGAAACCAAAGCATCAATATCATT-TATCCTTATGAGAAGACTATGTTTATGGT
* * * * *
113204 GCCTAATCCTAAAAAGAATGGGGATTAGAATGAGTATTCATG-TT-TC-T-CTTAAGGGACAAAT
129 GCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAAC
* * * *
113265 TTTGATTTTATCATTAACGGTAGAAAGAAAAGCTTCTCTTGCAACACAAAAGCATCAATGTCATG
194 TTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
* * * ** * * *
113330 TATCATAATAAAGGGAATGTGTTTTTCATTCCCAATCTTGGAAAGAAATGGAGACTTTTATGAGA
259 TATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAG-ATTGGAGACTTTTACGAGA
* *
113395 ATCAATGCATGTCTCATTTAAAGTACAAACTTTAATTTTAAGGAAAATAAAGCAAAGAAAAGATT
323 ATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT
* *
113460 TTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAA
388 TTCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
113525 TCACGAAATGAATGAAGATCCTTA
453 TCACGAAATGAATGAAGATCCTTA
* *
113549 CTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAA
1 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGAATTTACAAAAATTGGTGGGAAGAAA
* * *
113614 GTGTTTCTTACGAAAGCAAAGCATCAATATCATTTATCCTTGTGAGAAGACTATGTTTATGGTGC
66 GTGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGC
* * **
113679 CTAATCCGGAAAAGAATTGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTT
131 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAACTT
*
113744 TGACTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTA
196 TGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTA
113809 TCCTAAT-AAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTTTTACGAGAATC
261 TCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTTTTACGAGAATC
* * *
113873 AATGCTTGTCTCATTTAAAGTACAAACCTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTC
326 AATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
113938 ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
391 ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
114003 TGAAATGAAGGAGGATCCTTA
456 CGAAATGAATGAAGATCCTTA
* *
114024 CTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGAATTTACAAAAATTTGTGGGAAGAAA
1 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGAATTTACAAAAATTGGTGGGAAGAAA
*
114089 GTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
66 GTGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGC
**
114154 CTAATCCTGAAAAGAATAAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAACTT
131 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAACTT
* * * *
114219 TGATTCTATCCATAACGGTAGAAAGAAAAGCTTCTTTTGCGACCCCAAAGCATTAATGTCATGTA
196 TGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * *
114284 TCCTAATGAAAAAAATTTATTTTTGGTTCCCAGTCTTGAAAAGATTGGAGACTTTTACAAGAATC
261 TCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTTTTACGAGAATC
* *
114349 AATGCATGTCTCATTTAAAGTACAAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
326 AATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
* * *
114414 ATGCAAAA-AAAGCCATAAATATCATTTATCCTAATGAGGGGAATGTGTTTGTAGTGCCTAATCA
391 ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
114478 TGAAATAAATGAAGATCCTTA
456 CGAAATGAATGAAGATCCTTA
* *
114499 CTAGAATCCATGTTTGTCTCATTTG-GAGCACGAACATCGAATTTACAAAAATTGATGGGAA-AA
1 CTAGAATCCATGTTTGTCTCATTTGAG-GCACGAACATAGAATTTACAAAAATTGGTGGGAAGAA
* * * * * * *
114562 AATGTTTCTTGCAAAACCAAATCATCAATATCCTGTATCCCTATGAGAAGACTATGTTTATGGTA
65 AGTGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTG
* * *
114627 CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGATAAACT
130 CCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAACT
* * * * * * * *
114692 TTGATTTTATCATTAACAGTGGAAAGAAAAGCTTTTTTTACGACACAAAAGCATCAATGTCATGT
195 TTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * * * * **
114757 GTCCTAATGAAGGGAAAGTGTTTTTGGATCCTAATCTTGGAAAGAGTGGAGCCTTTTACTTGAAT
260 ATCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTTTTACGAGAAT
* * * *
114822 CATTGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGAAAAATATGGCAAAGAAAAGATTTC
325 CAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT
* * *
114887 CATGCAAAAGAAAACTATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATC
390 CATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
*
114952 ACGAAATGAATGATGATCCTTA
455 ACGAAATGAATGAAGATCCTTA
* * ** *
114974 CTAGAATCCATGTTTATCTCATTTGAGGCACAAATTTAGAATTTACAAAAATTGGTGGGGAGAAA
1 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGAATTTACAAAAATTGGTGGGAAGAAA
*
115039 GTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATATAAGCCTTATGAGAAGACTATGTCTAT
66 GTGTTTCTTGCGAAACCAAAGCATCAATATCAT-T-TAT---CCTTATGAGAAGACTATGTTTAT
* *
115104 GGTGCCTAATCCCGAAAAAAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACA
126 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACA
* * *
115169 AACTTTGATTCTATCCATAACGGTAGAAAGAAAAGCTTCTCTTGCGACCCCAATGCATCAATGTC
191 AACTTTGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
* * * *
115234 ATGTATCCTAATGAATG-GAATGCGTTTTTGGTTCCCAATCTTGAAATGATTGGAGATTTTTATG
256 ATGTATCCTAATGAA-GAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTTTTACG
* * *
115298 AGAATCAATGCATGTCTCATTTAATGTACAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAT
320 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
* * ** * *
115363 TTTTTCATGCTAAAGAAAACCATAAATATCATGCATCCTGATGAGGAGATTGTGTTTATAGTGCC
385 ATTTTCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
115428 TAATCACGAAATGAATGAAGATCCTTA
450 TAATCACGAAATGAATGAAGATCCTTA
* * * *
115455 CTAGAATCCATGTTTGTCTCATTTGAGGCATGAACATGGAATTTACAAAAATTGATGGGAAAAAA
1 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGAATTTACAAAAATTGGTGGGAAGAAA
* * * * * *
115520 ATGTTTCTTGCGAAACCAAATCATCAATATCCTTTATCCTTATGAGAAGACTATGTTTACGATTC
66 GTGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGC
* * * *
115585 TTAATCCTCAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTATTATTTAAGTGACAAACTT
131 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAACTT
* * * * *
115650 TGATTTTATCAGTAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTA
196 TGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * *
115715 TCCTAATGAA-AGGAATGTGCTCTGGGATCCCAATCTTGGAAAGAATGGAGACTTTTATGAGAAT
261 TCCTAATGAAGA-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTTTTACGAGAAT
* * * * * *
115779 CAAAGCATGCCTTATTTAAAGCACAAACTTTGA-TCTAAGG-AAATGAGGCAAAGAAAAGATTTT
325 CAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT
*
115842 AATGCAAAAG
390 CATGCAAAAG
115852 TGATGAAAAC
Statistics
Matches: 2040, Mismatches: 244, Indels: 37
0.88 0.11 0.02
Matches are distributed among these distances:
473 145 0.07
474 330 0.16
475 664 0.33
476 405 0.20
477 78 0.04
478 3 0.00
479 3 0.00
480 1 0.00
481 410 0.20
482 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACATAGAATTTACAAAAATTGGTGGGAAGAAA
GTGTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGC
CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGTGACAAACTT
TGATTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTA
TCCTAATGAAGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGATTGGAGACTTTTACGAGAATC
AATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
ATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
CGAAATGAATGAAGATCCTTA
Found at i:117498 original size:12 final size:11
Alignment explanation
Indices: 117476--117551 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
117466 AGAGAAAGAA
*
117476 GAGAGAGGAGG
1 GAGATAGGAGG
117487 GATGATAGGAGG
1 GA-GATAGGAGG
117499 AGAGATAGGA--
1 -GAGATAGGAGG
*
117509 GAGATAGTA--
1 GAGATAGGAGG
117518 GAGATAGGAGG
1 GAGATAGGAGG
*
117529 GATGATAAGAGG
1 GA-GATAGGAGG
*
117541 AGAGACAGGAG
1 -GAGATAGGAG
117552 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 16 0.30
11 4 0.08
12 29 0.55
13 4 0.08
ACGTcount: A:0.41, C:0.01, G:0.47, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:117521 original size:11 final size:9
Alignment explanation
Indices: 117496--117556 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
117486 GGATGATAGG
117496 AGGAGAGAT
1 AGGAGAGAT
117505 AGGAGAGAT
1 AGGAGAGAT
*
117514 AGTAGAGAT
1 AGGAGAGAT
*
117523 AGGAGGGAT
1 AGGAGAGAT
* *
117532 --GATA-AG
1 AGGAGAGAT
*
117538 AGGAGAGAC
1 AGGAGAGAT
117547 AGGAGAGAT
1 AGGAGAGAT
117556 A
1 A
117557 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
6 1 0.03
7 2 0.05
8 3 0.08
9 34 0.85
ACGTcount: A:0.44, C:0.02, G:0.43, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:117527 original size:42 final size:42
Alignment explanation
Indices: 117466--117584 Score: 166
Period size: 42 Copynumber: 2.8 Consensus size: 42
117456 TAGCCCTCAA
* * *
117466 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
117508 AGAGATAGTAGAGATAGGAGGGATGATAAGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
117550 AGAGATAATAGAGAGAGGAAGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
117585 GAGAGAAGAA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.45, C:0.02, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:117568 original size:18 final size:18
Alignment explanation
Indices: 117499--117568 Score: 50
Period size: 18 Copynumber: 3.6 Consensus size: 18
117489 TGATAGGAGG
* *
117499 AGAGATAGGAGAGATAGT
1 AGAGAGAGGAGAGATAAT
* *
117517 AGAGATAGGAGGGATGATAAG
1 AGAGAGAGGA--GA-GATAAT
117538 AGGAGAGACAGGAGAGATAAT
1 A-GAGAG--AGGAGAGATAAT
117559 AGAGAGAGGA
1 AGAGAGAGGA
117569 AGGATGACAG
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
18 14 0.33
20 7 0.17
21 11 0.26
22 6 0.14
24 4 0.10
ACGTcount: A:0.46, C:0.01, G:0.41, T:0.11
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:122291 original size:218 final size:218
Alignment explanation
Indices: 121913--122352 Score: 853
Period size: 218 Copynumber: 2.0 Consensus size: 218
121903 CGTTGGAAGG
*
121913 ATTTCAAGGACCAATAACGAGGGCAAAGGCAAAGAGGATAAAGGAAGACCTAGAGAAGATGGTTG
1 ATTTCAAGGACCAATAACGAGGGCAAAGGCAAAGAGGATAAAGAAAGACCTAGAGAAGATGGTTG
* *
121978 CTGGCCTATTTGAAAGTAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTACTTGTATATCT
66 CTGGCCTATTTGAAAGTAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTACTTGAATATAT
122043 TTGGAAGATATGGGCTCCAATGGATTGAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCT
131 TTGGAAGATATGGGCTCCAATGGATTGAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCT
122108 GGTTATGACTTGCTTTGGGCTTT
196 GGTTATGACTTGCTTTGGGCTTT
122131 ATTTCAAGGACCAATAACGAGGGCAAAGGCAAAGAGGATAAAGAAAGACCTAGAGAAGATGGTTG
1 ATTTCAAGGACCAATAACGAGGGCAAAGGCAAAGAGGATAAAGAAAGACCTAGAGAAGATGGTTG
122196 CTGGCCTATTTGAAAGTAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTACTTGAATATAT
66 CTGGCCTATTTGAAAGTAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTACTTGAATATAT
122261 TTGGAAGATATGGGCTCCAATGGATTGAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCT
131 TTGGAAGATATGGGCTCCAATGGATTGAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCT
122326 GGTTATGACTTGCTTTGGGCTTT
196 GGTTATGACTTGCTTTGGGCTTT
122349 ATTT
1 ATTT
122353 AGCATAAAAA
Statistics
Matches: 219, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
218 219 1.00
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (218 bp):
ATTTCAAGGACCAATAACGAGGGCAAAGGCAAAGAGGATAAAGAAAGACCTAGAGAAGATGGTTG
CTGGCCTATTTGAAAGTAGACCCAATTTGGAGTTAGAAGAGCCCAAGCTAGTTACTTGAATATAT
TTGGAAGATATGGGCTCCAATGGATTGAATTAGGACTTGGGTTATTTTGTAATAAAGGGCCTGCT
GGTTATGACTTGCTTTGGGCTTT
Found at i:123669 original size:476 final size:476
Alignment explanation
Indices: 122772--124599 Score: 2619
Period size: 476 Copynumber: 3.8 Consensus size: 476
122762 GTTGTCATCA
* * * *
122772 AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGTCTAACCATGAA
1 AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAA
* * * * * * * * *
122837 ATGAGTGAAGATCCTTGCCAGAATTCATGTTTGTCTAATTTGAGGAATGAACTTATACTTTACAA
66 ATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAA
* * *
122902 AAATTGGTGGGTACAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCAT-TCATCCTTATGAGA
131 AAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTTATGAGA
* ** * * * * *
122966 AAACGATGTTTATGGTGCCTAATGCAGAAATGAATGTGGATTAGTGTGAGTATTCTTGTGTGTCT
195 AAACTATGTTTACAGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTCT
* * *
123031 TATTTAAGAGTTAAATTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCA
260 TATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCA
* * *
123096 AAGCATCAATGTCATGTATCC-AATGAAAGGAATGAGTTTTTGGTTCCTAATATTAAAAAGAATG
325 AAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATG
*
123160 GAGACTTTTACCAA-AATCAAATGCATTTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
390 GAGACTTTTA-CAAGAATC-AATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
* *
123224 AAGGAAAAGAAAAGATTTCCATGC
453 AAGGCAAAGAAAAGATTTTCATGC
* * *
123248 AAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGTGTTGATAGTGCCTAATCACAAA
1 AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAA
*
123313 ATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAGTTAGAATTTACAA
66 ATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAA
* * * * * *
123378 ACATTGGTGGGAAGAAAGTGTTCCTTGCGAAAGCAAAGCATCAATATCATGTATTCTTATGAGAA
131 AAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA
* ** * * *
123443 GACTATGTTTAGGGTGCCTAATCCGGAAAAGAACGGGGATTAGTATGAGTATTCATGTTTGTCTT
196 AACTATGTTTACAGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTCTT
* * *
123508 ATTTAAAAGACAAACTTTGATTCTATCAATAACGGTAGAAAGA-AGAGCTTCTCTTGCGACACCA
261 ATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGACA-AGCTTCTCTTGCGACACCA
* **
123572 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGAATG
325 AAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATG
** *
123637 GAGACTTTTATGAGATTCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAA
390 GAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAA
*
123702 AGCAAAGAAAAGATTTTCATGC
455 GGCAAAGAAAAGATTTTCATGC
* * * *
123724 AAAAGAAAACCATCAGTATCATTTATCCTAATAAGGAGAATGTGTTTAGAGTGCCTAATCATGAA
1 AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAA
* **
123789 ATGAATGAAGATCCTTACTCGAATCCATGTCCGTCTCATTTGAGGCACGAACTTAGAATTTACAA
66 ATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAA
* * * * * * *
123854 AAATTAGTGGGAAAAAAGCATTTCTTGGGAAACCAAATCTTCAATATCTTGCATCCTTATGAGAA
131 AAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA
* * * *
123919 GACAATTTTTACAGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTAATGTTTGTCTT
196 AACTATGTTTACAGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTCTT
*
123984 ATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCCTCTCTTGCGACACCAA
261 ATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCAA
* * *
124049 AGCATTAATGTCATTTATCCTAATGAAAGGATTGTGTTTTTGGTTCCCAATCTTAAAAAGAATGG
326 AGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGG
* *
124114 AGACTTTTACAAGAATCGATGCATGTCTCATTTAATGTACAAACTTTGATTTTAAGGAAAATAAG
391 AGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG
***
124179 GCAAAGAAAAGATTTTTGGGC
456 GCAAAGAAAAGATTTTCATGC
* * * * * * * *
124200 AAAAGAAAACTATAAATATCATATATCCTGATGAGGAGAAAGTATTCATAGTGCCTAATCCCGAA
1 AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAA
* *
124265 ATAAATGAAGATCCTTACTAGAATCTATGTTTGTCTCA-TT--GGCACGAACTTAGAATTTACAA
66 ATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAA
*
124327 AAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATTTCCA-GTATCCTTATGAGA
131 AAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATAT-CATGTATCCTTATGAGA
* * * * *
124391 AAACTATTTTTACAGTGCCTAATCTAGAAAAAGAATGTGGACTAGTATGAGTTTTCATGTTTATC
195 AAACTATGTTTACAGTGCCTAATCCAG-AAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTC
*
124456 TTATTTAAGAGATAAACTTTGATTCTATTAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACC
259 TTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACC
124521 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAAT
324 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAAT
124586 GGAGACTTTTACAA
389 GGAGACTTTTACAA
124600 TGTCCTAATG
Statistics
Matches: 1204, Mismatches: 141, Indels: 16
0.88 0.10 0.01
Matches are distributed among these distances:
473 100 0.08
474 173 0.14
475 3 0.00
476 876 0.73
477 52 0.04
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
AAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAA
ATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAA
AAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA
AACTATGTTTACAGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTCTT
ATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCAA
AGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGG
AGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAG
GCAAAGAAAAGATTTTCATGC
Found at i:123709 original size:159 final size:155
Alignment explanation
Indices: 123069--124187 Score: 397
Period size: 159 Copynumber: 7.1 Consensus size: 155
123059 AATAATGGTG
* * * *
123069 GAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCC-AATGAAAGGAATGAGT
1 GAAAGA-AAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGT
* * * * ** * *
123133 TTTTGGTTCCTAATATTAAAAAGAATGGAGACTTTTACCAAAATCAAATGCATTTCTCATTTAAA
64 TTATGGTGCCTAAT-CTGAAAAGAATGGAGA-TTTTATGAGAATC-AATGCATGTCTCATTTAAA
*
123198 GTACAAACTTTGATTTTAAGGAA-AATAAG
126 GTACAAACTTTGATTTTAAGGAACAATAAA
* * * ** *
123227 GAAAAGAAAAGATT-TCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAGGAGAATGT
1 G-AAAG-AAAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGT
* * ** * * * ** *
123291 GTTGATAGTGCCTAATCACAAAATGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCATTTG
62 GTTTATGGTGCCTAATCTGAAAA-GAATGGAGAT-TTTA-TGAGAATCAATGCATGTCTCATTTA
* * * * * * * ***
123355 AGGCACGAAGTTAGAATTTACA--AACATTGGTG
124 AAGTACAAACTTTGATTTTA-AGGAACAAT-AAA
* * * * * * * *
123387 GGAAGAAAGTGTTC-CTTGCGAAAGCAAAGCATCAATATCATGTATTCTTATGAGAAGACTATGT
1 GAAAGAAAG-CTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGT
* * * * * * ** *
123451 TTAGGGTGCCTAATCCGGAAAAGAACGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAA
64 TTATGGTGCCTAAT-CTGAAAAGAATGGAGATT-TTATGAG-AATCAATGCATGTCTCATTT-AA
* **
123515 AG-ACAAACTTTGATTCTATCAA-TAACGGT--A
125 AGTACAAACTTTGATT-T-T-AAGGAACAATAAA
* *
123545 GAAAGAAGAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGT
1 GAAAGAA-AGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGT
* * * * *
123610 TTTTGGTTCCCAATCTTGGAAAGAATGGAGACTTTTATGAGATTCAATGCATGTCTCATTTAAAG
64 TTATGGTGCCTAATC-TGAAAAGAATGGAGA-TTTTATGAGAATCAATGCATGTCTCATTTAAAG
123675 TACAAACTTTGATTTTAAGGAA-AATAAA
127 TACAAACTTTGATTTTAAGGAACAATAAA
* * * * ** * * * *
123703 GCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAGTATCATTTATCCTAATAAGGAGAATGTG
1 G-AAAG-AAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTG
* * * * * *
123768 TTTA-GAGTGCCTAATCATGAAATGAATGAAGATCCTTACT-CGAATCCATGTC-CGTCTCATTT
63 TTTATG-GTGCCTAATC-TGAAAAGAATGGAGAT-TTTA-TGAGAATCAATG-CATGTCTCATTT
* * * * * * **
123830 GAGGCACGAACTTAGAATTTACA--AA-AATTAGTGG
123 AAAGTACAAACTTTGATTTTA-AGGAACAA-TA--AA
* * * * * * *
123864 GAAA-AAAGCATT-TCTTGGGAAACCAAATCTTCAATATCTTGCATCCTTATGAGAAGACAAT-T
1 GAAAGAAAGC-TTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG--G-GAATGT
** * * * * ** *
123926 -TTTACAGTGCCTAATCCAGAAAAGAATGTG-GATTAGTATGAGTATTAATGTTTGTCTTATTTA
62 GTTTATGGTGCCTAAT-CTGAAAAGAATG-GAGATT-TTATGAGAATCAATGCATGTCTCATTTA
* * ** *
123989 AGAG-ATAAACTTTGATTCTATCAA-TAACGGT--G
124 A-AGTACAAACTTTGATT-T-T-AAGGAACAATAAA
* * * * * * *
124021 GAAAGACAAGCCTCTCTTGCGACACCAAAGCATTAATGTCATTTATCCTAATGAAAGGATTGTGT
1 GAAAGA-AAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGT
* * * * ** * *
124086 TTTTGGTTCCCAATCTTAAAAAGAATGGAGACTTTTACAAGAATCGATGCATGTCTCATTTAATG
64 TTATGGTGCCTAATC-TGAAAAGAATGGAGA-TTTTATGAGAATCAATGCATGTCTCATTTAAAG
*
124151 TACAAACTTTGATTTTAAGGAA-AATAAG
127 TACAAACTTTGATTTTAAGGAACAATAAA
124179 GCAAAGAAA
1 G-AAAGAAA
124188 AGATTTTTGG
Statistics
Matches: 693, Mismatches: 195, Indels: 146
0.67 0.19 0.14
Matches are distributed among these distances:
156 6 0.01
157 15 0.02
158 218 0.31
159 379 0.55
160 65 0.09
161 10 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (155 bp):
GAAAGAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTT
ATGGTGCCTAATCTGAAAAGAATGGAGATTTTATGAGAATCAATGCATGTCTCATTTAAAGTACA
AACTTTGATTTTAAGGAACAATAAA
Found at i:124637 original size:62 final size:62
Alignment explanation
Indices: 124540--124661 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
124530 ATGTCATGTA
*
124540 TCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGACTTTTACAATG
1 TCCTAATGAAAGGAATGTGTTTTTGGTCCCCAATCTTAAAAAGAATGGAGACTTTTACAATG
* *
124602 TCCTAATGAAAGGAATGTGTTTTTGGTCCCCAATCTTCAAATGAATGGAGACTTTTACAA
1 TCCTAATGAAAGGAATGTGTTTTTGGTCCCCAATCTTAAAAAGAATGGAGACTTTTACAA
124662 GAATCAATGC
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.34
Consensus pattern (62 bp):
TCCTAATGAAAGGAATGTGTTTTTGGTCCCCAATCTTAAAAAGAATGGAGACTTTTACAATG
Found at i:124948 original size:157 final size:157
Alignment explanation
Indices: 124644--124950 Score: 465
Period size: 157 Copynumber: 2.0 Consensus size: 157
124634 ATCTTCAAAT
* *
124644 GAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGAA
1 GAATGGAGAATTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
*
124709 AATAAGGCAAAGAAAAGATTTCCAGGCAAAAGAAAACCATCAGTATCATTTATCCTAATAAGGAG
66 AATAAGGCAAAGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAG
* * *
124774 AATGTGTTTGGTTCCTAATCTTGGAAA
131 AATGCGTTTAGTGCCTAATCTTGGAAA
* *
124801 GAATGGAGAATTTTACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
1 GAATGGAGAATTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
* * * * *
124866 AGTGAGGCAAATAAAAGATTT-CAGGTAAAA-AAAACCATCAATATCATTTATCCTAATAGGGAG
66 AATAAGGCAAAGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAG
124929 AATGCGTTTATAGTGCCTAATC
131 AATGCG-TT-TAGTGCCTAATC
124951 ACGAAATGAA
Statistics
Matches: 135, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
155 36 0.27
156 10 0.07
157 89 0.66
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.30
Consensus pattern (157 bp):
GAATGGAGAATTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAA
AATAAGGCAAAGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAG
AATGCGTTTAGTGCCTAATCTTGGAAA
Found at i:124990 original size:157 final size:157
Alignment explanation
Indices: 124654--124996 Score: 424
Period size: 157 Copynumber: 2.2 Consensus size: 157
124644 GAATGGAGAC
* * * *
124654 TTTTACAAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGAAAATAAGGCAA
1 TTTTACGAGAATCAATACTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAA
* * *
124719 AGAAAAGATTTCCAGGCAAAAGAAAACCATCAGTATCATTTATCCTAATAAGGAGAATGTGTTTG
66 AGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGCGTTTA
* ** **
124784 GTTCCTAATCTTGGAAAGAATGGAGAA
131 GTGCCTAATCTACGAAAGAATAAAGAA
* * *
124811 TTTTACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAGTGAGGCAA
1 TTTTACGAGAATCAATACTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAA
* * *
124876 ATAAAAGATTT-CAGGTAAAA-AAAACCATCAATATCATTTATCCTAATAGGGAGAATGCGTTTA
66 AGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGCG-TT-
124939 TAGTGCCTAATC-ACGAAATGAATAAAG-A
129 TAGTGCCTAATCTACGAAA-GAATAAAGAA
* * * *
124967 TCTTTACTAGAATCCATATTTGTCTGATTT
1 T-TTTACGAGAATCAATACTTGTCTCATTT
124997 GACAAAGGAA
Statistics
Matches: 161, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
155 36 0.22
156 16 0.10
157 109 0.68
ACGTcount: A:0.39, C:0.13, G:0.17, T:0.31
Consensus pattern (157 bp):
TTTTACGAGAATCAATACTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAA
AGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGCGTTTA
GTGCCTAATCTACGAAAGAATAAAGAA
Found at i:125670 original size:476 final size:475
Alignment explanation
Indices: 124760--125936 Score: 1781
Period size: 476 Copynumber: 2.5 Consensus size: 475
124750 AGTATCATTT
* * * *
124760 ATCCTAAT-AA-GGAGA-ATGTGTTTGGTTCCTAATCTTGGAAAGAATGGAGAATTTTACGAGAA
1 ATCCTAATGAAGGGA-ATATGTTTTTGGTTCCCAATCTTGGAAAGAATGGAGACTTTTATGAGAA
* * * *
124822 TCAATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAGTGAGGCAAATAAAAGA-TT
65 TCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
* * *
124886 TCAGGTAAAA-AAAACCATCAATATCATTTATCCTAATAGGGAGAATGCGTTTATAGTGCCTAAT
130 TCAAGCAAAAGAAAACCATCAATATCATTTATCCTAATA-GGAGAATGTGTTTATAGTGCCTAAT
* * ** * * * *
124950 CACGAAATGAATAAAGATCTTTACTAGAATCCATATTTGTCTGATTTGACAAAGGAACTTATACT
194 CACGAAATGAATGAAGATCCTTACTAGAATCCATGCTTGTCTCATTTGACAAACGAACTTAGAAT
* *
125015 TTACAAAAATTGGTGGGAAGAGAGCGTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTTA
259 TTACAAAAATTGGTGGGAAGAAAGCGTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAA
* * * * * *
125080 TGAGAAGACTATGTTTCTGATGCCTAACATAGAAAAGAATGTGGATTGGTATGACTGTTCAAGTT
324 TGAGAAGACTATGTGTATGATGCCTAACACAGAAAAGAATGGGGATTAGTATGACTATTCAAGTT
* *
125145 TGTCTTATTTAAGAGACAAACTTTGATTCTATAAATAACGGTGGAAAGAACAGCTTCTCTTGCGA
389 TGTCTTATTTAAAAGACAAACTTTGATTCTATAAATAACGGTAGAAAGAACAGCTTCTCTTGCGA
125210 CACCAAAGCATCAATGTCATGC
454 CACCAAAGCATCAATGTCATGC
* *
125232 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAAACTTGGAAAGAATAGAGACTTTTATGAGAAT
1 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTGGAAAGAATGGAGACTTTTATGAGAAT
*
125297 CAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAAGCAAAGAAAAGATTTT
66 CAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT
**
125362 CATCCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
131 CAAGCAAAAGAAAACCATCAATATCATTTATCCTAAT-AGGAGAATGTGTTTATAGTGCCTAATC
*** *
125427 ACGAAATGAATGAAGATCCTTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAAGTTAGAATT
195 ACGAAATGAATGAAGATCCTTACTAGAATCCATGCTTGTCTCATTTGACAAACGAACTTAGAATT
* * * * *
125492 TACAAACATTGGTGGGAAGAAAGTGTTTCTTGCGAAAGCAAAGCATCAATATCATGTATTCTAAT
260 TACAAAAATTGGTGGGAAGAAAGCGTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAAT
* * * *
125557 GAGAAGACTATGTGTATGGTGCCTAATC-CGGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
325 GAGAAGACTATGTGTATGATGCCTAA-CACAGAAAAGAATGGGGATTAGTATGACTATTCAAGTT
* *
125621 TGTCTTATTTAAAAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAGAGCTTCTCTTGCGA
389 TGTCTTATTTAAAAGACAAACTTTGATTCTATAAATAACGGTAGAAAGAACAGCTTCTCTTGCGA
*
125686 CACCAAAGCATCAATGTCATGT
454 CACCAAAGCATCAATGTCATGC
* *
125708 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGAATGGAGACATTTATGAGAAT
1 ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTGGAAAGAATGGAGACTTTTATGAGAAT
*
125773 CAATGCATGTTTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT
66 CAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT
*
125838 CAAGCAAAAGAAAACCATCAGTATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATC
131 CAAGCAAAAGAAAACCATCAATATCATTTATCCTAAT-AGGAGAATGTGTTTATAGTGCCTAATC
125903 ACGAAATGAATGAAGATCCTTACTAGAATCCATG
195 ACGAAATGAATGAAGATCCTTACTAGAATCCATG
125937 TGATGACAAC
Statistics
Matches: 639, Mismatches: 59, Indels: 10
0.90 0.08 0.01
Matches are distributed among these distances:
472 8 0.01
473 3 0.00
474 101 0.16
475 9 0.01
476 516 0.81
477 2 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (475 bp):
ATCCTAATGAAGGGAATATGTTTTTGGTTCCCAATCTTGGAAAGAATGGAGACTTTTATGAGAAT
CAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTT
CAAGCAAAAGAAAACCATCAATATCATTTATCCTAATAGGAGAATGTGTTTATAGTGCCTAATCA
CGAAATGAATGAAGATCCTTACTAGAATCCATGCTTGTCTCATTTGACAAACGAACTTAGAATTT
ACAAAAATTGGTGGGAAGAAAGCGTTTCTTACGAAACCAAAGCATCAATATCATGTATCCTAATG
AGAAGACTATGTGTATGATGCCTAACACAGAAAAGAATGGGGATTAGTATGACTATTCAAGTTTG
TCTTATTTAAAAGACAAACTTTGATTCTATAAATAACGGTAGAAAGAACAGCTTCTCTTGCGACA
CCAAAGCATCAATGTCATGC
Found at i:125914 original size:159 final size:157
Alignment explanation
Indices: 124614--125914 Score: 656
Period size: 159 Copynumber: 8.2 Consensus size: 157
124604 CTAATGAAAG
* * * * * ** *
124614 GAATGTGTTTTTGGTCCCCAATCTTC-AAATGAATGGAGACTTTTACAAGAATCAATGCATGTCT
1 GAATGTGTTTATGGTGCCTAATC-ACGAAATGAATGGAGACATTTATGAGAATCAATGCTTGTCT
* * *
124678 CATTTAAAGTATAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCAGGCAAAAGAA
65 CATTTAAAGTACAAACTTTGATTTTAA--AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAA
* *
124743 AACCATCAGTATCATTTATCCTAATAAGGA
128 AACCATCAATATCATGTATCCTAATAAGGA
* ** *
124773 GAATGTG-TT-TGGTTCCTAATCTTGGAAA-GAATGGAGA-ATTTTACGAGAATCAATGCTTGTC
1 GAATGTGTTTATGGTGCCTAATC-ACGAAATGAATGGAGACA-TTTATGAGAATCAATGCTTGTC
* * * * *
124834 TCATTTAAAGTACAAACTTTGATTTTAAGGAAAGTGAGGCAAATAAAAGA-TTTCAGGTAAAA-A
64 TCATTTAAAGTACAAACTTTGATTTTAA--AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGA
* *
124897 AAACCATCAATATCATTTATCCTAATAGGGA
127 AAACCATCAATATCATGTATCCTAATAAGGA
* * ** * **
124928 GAATGCGTTTATAGTGCCTAATCACGAAATGAATAAAGATC-TTTACT-AGAATCCATATTTGTC
1 GAATGTGTTTATGGTGCCTAATCACGAAATGAATGGAGA-CATTTA-TGAGAATCAATGCTTGTC
* ** * ** ** * ** * * *
124991 TGATTTGACAA--AGGAACTTAT-ACTTTACAAAAATTGGTGGGAAG-AGAGCGTTTCTTACGAA
64 TCATTT-A-AAGTACAAACTT-TGATTTTA-AAAAATAAG-GCAAAGAAAAGATTTTCATGCAAA
** * * * *
125052 ACCAAAGCATCAATATCATGTATCCTTATGAGAA
124 AGAAAACCATCAATATCATGTATCCTAATAAGGA
* * * * * * * *
125086 GACTATGTTTCTGATGCCTAA-CATAGAAAAGAATGTG-G--ATTGGTATGACTG-TTCAA-GTT
1 GAATGTGTTTATGGTGCCTAATCA-CGAAATGAATG-GAGACATT--TATGA--GAATCAATGCT
* * * * * * * *
125145 TGTCTTATTTAAGAG-ACAAACTTTGATTCT-ATAAATAACGGTGGAAAGAACAGCTTCTCTTGC
60 TGTCTCATTTAA-AGTACAAACTTTGATTTTAAAAAATAA--G-GCAAAGAAAAGATTTTCATGC
* * ** * * *
125208 GACACCAAAGCATCAATGTCATGCATCCTAATGAAGG-
121 AAAAGAAAACCATCAATATCATGTATCCTAAT-AAGGA
* * * * * ** * * *
125245 GAATATGTTTTTGGTTCCCAAACTTGGAAA-GAATAGAGACTTTTATGAGAATCAATGCATGTCT
1 GAATGTGTTTATGGTGCCTAATC-ACGAAATGAATGGAGACATTTATGAGAATCAATGCTTGTCT
* *
125309 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAAGCAAAGAAAAGATTTTCATCCAAAAGAA
65 CATTTAAAGTACAAACTTTGATTTTAA--AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAA
* *
125374 AACCATCAATATCATTTATCCTAATGAGGA
128 AACCATCAATATCATGTATCCTAATAAGGA
* * * *
125404 GAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATC-CTTACT-AGAATCCATGCTTGTC
1 GAATGTGTTTATGGTGCCTAATCACGAAATGAATGGAGA-CATTTA-TGAGAATCAATGCTTGTC
* * * * * * * * ** ** * *
125467 TCATTTGAGGCACGAAGTTAGAATTTACAAACATTGGTGGGAAG-AAAG-TGTTTCTTGCGAAAG
64 TCATTTAAAGTACAAACTTTGATTTTA-AAAAATAAG-GCAAAGAAAAGAT-TTTCATGCAAAAG
* * * * *
125530 CAAAGCATCAATATCATGTATTCTAATGAGAA
126 AAAACCATCAATATCATGTATCCTAATAAGGA
* * * * * * *
125562 GACTATGTGTATGGTGCCTAATC-CGGAAAAGAATGG-G-GATTAGTATGAGTATTC-ATGTTTG
1 GAATGTGTTTATGGTGCCTAATCAC-GAAATGAATGGAGACATT--TATGAG-AATCAATGCTTG
* * ** * * * * * *
125623 TCTTATTTAAAAG-ACAAACTTTGATTCT-ATCAATAACGGTAGAAAGAAGAGCTTCTCTTGCGA
62 TCTCATTT-AAAGTACAAACTTTGATTTTAAAAAATAA-GG--CAAAGAAAAGATTTTCATGCAA
* ** * *
125686 CACCAAAGCATCAATGTCATGTATCCTAATGAAGG-
123 AAGAAAACCATCAATATCATGTATCCTAAT-AAGGA
* * * ** * *
125721 GAATGTGTTTTTGGTTCCCAATCTTGGAAA-GAATGGAGACATTTATGAGAATCAATGCATGTTT
1 GAATGTGTTTATGGTGCCTAATC-ACGAAATGAATGGAGACATTTATGAGAATCAATGCTTGTCT
*
125785 CATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCAAGCAAAAGAA
65 CATTTAAAGTACAAACTTTGATTTTAA--AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAA
* *
125850 AACCATCAGTATCATTTATCCTAATAAGGA
128 AACCATCAATATCATGTATCCTAATAAGGA
*
125880 GAATGTGTTTATAGTGCCTAATCACGAAATGAATG
1 GAATGTGTTTATGGTGCCTAATCACGAAATGAATG
125915 AAGATCCTTA
Statistics
Matches: 856, Mismatches: 214, Indels: 144
0.71 0.18 0.12
Matches are distributed among these distances:
155 36 0.04
156 37 0.04
157 159 0.19
158 220 0.26
159 365 0.43
160 21 0.02
161 7 0.01
162 11 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (157 bp):
GAATGTGTTTATGGTGCCTAATCACGAAATGAATGGAGACATTTATGAGAATCAATGCTTGTCTC
ATTTAAAGTACAAACTTTGATTTTAAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAAC
CATCAATATCATGTATCCTAATAAGGA
Found at i:130967 original size:42 final size:42
Alignment explanation
Indices: 130912--131030 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
130902 TTCTTCTCTC
* *
130912 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
130954 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
130996 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
131031 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:130971 original size:12 final size:11
Alignment explanation
Indices: 130945--131020 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
130935 TCTATTATCT
*
130945 CTCCTGTCTCTC
1 CTCCTATCTC-C
130957 CTCCTATCATCC
1 CTCCTATC-TCC
130969 CTCCTATCT--
1 CTCCTATCTCC
*
130978 CTACTATCT--
1 CTCCTATCTCC
*
130987 CTCCTGTCTCTC
1 CTCCTATCTC-C
130999 CTCCTATCATCC
1 CTCCTATC-TCC
*
131011 CTCCTCTCTC
1 CTCCTATCTC
131021 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:130972 original size:24 final size:24
Alignment explanation
Indices: 130936--131021 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
130926 CCTCCTCTCT
* *
130936 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
130960 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
130981 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
131002 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
131022 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:130996 original size:18 final size:18
Alignment explanation
Indices: 130927--130997 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
130917 CCTGTCATCC
* *
130927 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
130945 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
130967 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
130987 CTCCTGTCTCT
1 CTCCTGTCTCT
130998 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:134198 original size:159 final size:157
Alignment explanation
Indices: 133379--138159 Score: 1545
Period size: 159 Copynumber: 30.2 Consensus size: 157
133369 GGGGATTAGT
* * * * * * *
133379 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATG
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATT-TTACGAG-AATCAATG
* ** * * * *
133443 TTTGTCTTATTT-AAGTGACAAACTTTGATTTTATTATTAAA-GATGGAAAGAAAAGCTTTTCTT
64 TTTGTCTCATTTAAAGT-ACAAACTTTGATTTTA--AAAAAATAAGGGAAAGAAAAGATTTCCTT
** * * * *
133506 GTGAGAGCAACGCATCAATGTCATGTATTCTA
126 GCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * * *
133538 GTGA-AGGGACTGTGCTT-TGG-GATCCCAGTCTTGGAAAGAATGGAGACTTTTATGAGAATCAA
1 ATGAGA-AGAATGTGTTTATGGTG--CCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAA
* ** * * * * * ***
133600 AGCATGTCTCATTTAAAGCACAAACTTTGA-TCTAAGAAAATGAGGCAAAGAAAAGATTTTAATG
62 TGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAGGGAAAGAAAAGATTTCCTTG
* * *
133664 CAAAAGAAAACCATCAATATCATTTATCCTA
127 CAAAAGCAAAGCATCAATATCATGTATCCTA
* * * ** * * * * * *
133695 ATGAGGAGAATGCGTTTATAGTATCTAACCA-CAAAATGAATGAAGATCCTTGCTAGAATTC-AT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA-GAATGGAGAT-TTTACGAGAA-TCAAT
* * * * ** * * ** * *
133758 GTTTGTCTAATTTGAGGAATGAACTTAT-ACTTTACAAAAATTGGTGGGAAG-AAAG-TGTTTCT
63 GTTTGTCTCATTTAAAGTACAAACTT-TGATTTTAAAAAAATAAG-GGAAAGAAAAGAT-TTCCT
* * * *
133820 TGCGAAACCAAAGCATCAATATCATTTATCCTT
125 TGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * ** *
133853 ATGAGAA-AACGATGTTTATGGTGCCTAATC-TAGAAAAGAATGTG-GATTAGTGTGAGTATTC-
1 ATGAGAAGAATG-TGTTTATGGTGCCTAATCAT-GAAAAGAATG-GAGATT-TTACGAG-AATCA
* * * * * * * *
133914 ATGTTTGTCTTATTTAAGAGT-CAAATTTTGATTGTATCAATAAT-GGTGGAAAGACAAG-CTTC
61 ATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTA-AAAAAATAAG-GGAAAGAAAAGATTTC
** * * *
133976 TCTTGTGACACCAAAGCATCAATGTCATGTATCCTA
123 -CTTGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * *
134012 ATGA-AAGTAATGGGTTTTTGGTTCCTAATCTTAAAAAGAATGGAGACTTTTACCAGAATCAATG
1 ATGAGAAG-AATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAATG
** * *
134076 CATGTCTCATTTAAAGTACAAACTTTGATTTTAAAGAAAATAAGGCAAAGAAAAGATTTCCATGC
64 TTTGTCTCATTTAAAGTACAAACTTTGATTTTAAA-AAAATAAGGGAAAGAAAAGATTTCCTTGC
* *
134141 AAAAGAAAACCATCAATATCATGTATCCTA
128 AAAAGCAAAGCATCAATATCATGTATCCTA
* * * ** * * * * *
134171 ATGAGGAGAATGTGTTTATAGTGCCTAATCACGAACTGGATGAAGATCCTTACAAGAATCTATGT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT-TTTACGAGAATCAATGT
* ** * * * * * * ** * *
134236 TTGTATCATTCGAGGCACAAACATAGAATTTACAAAAATTGGTGGGAA-AAAAGCAGTT-CTTGC
65 TTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAG-GGAAAGAAAAG-ATTTCCTTGC
* * * * *
134299 -GAAGCCAAATCATCAATTTCCTGTATCCTT
128 AAAAG-CAAAGCATCAATATCATGTATCCTA
* * * * *
134329 ATGAGAAGAGTAT-TTTGATGGTGCCTAATC-TAGAAAAGAATGTG-GATTAGTATGAGTATTC-
1 ATGAGAAGAATGTGTTT-ATGGTGCCTAATCAT-GAAAAGAATG-GAGATT-TTACGAG-AATCA
* * * ** * * *
134390 ATATTTGTCTTATTTAAGAG-ACAAACTTTGATTCT--ATCAATAACGGTGGAAAGACAAG-CTG
61 ATGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAAAAAATAA--G-GGAAAGAAAAGATTT
* * *
134451 CTCTTGCAACACCAAAGCATCAATGTCATGTATCCTA
122 C-CTTGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * *
134488 ATGA-AAGGAATGTGTTTTTGGTTTCC-AATCTTAAAAAGAATGGAGACTTTTACAAGAATCAAT
1 ATGAGAA-GAATGTGTTTATGG-TGCCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAAT
** * * * * * * **
134551 GCATGTCTTATTTAATGTACAAACTTTAATTTTGAAGGAAAATAAGGCAAAGAATAGATTTCCAC
63 GTTTGTCTCATTTAAAGTACAAACTTTGATTTT-AA-AAAAATAAGGGAAAGAAAAGATTTCCTT
* * *
134616 GCAAAAGAAAACCATCAATATCATGTATCCTG
126 GCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * * * * *
134648 ATGAGGAGAACGTATTTATAGTGGCTAGTCATGAAATGAATGAAGATCCTTACTAGAATCCATGT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT-TTTACGAGAATCAATGT
* * * * * * * ** * * *
134713 TTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAA-AAAAGCGTTT-CGTGC
65 TTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAG-GGAAAGAAAAG-ATTTCCTTGC
* * * * * *
134776 GAAACCAAACCATCAATATCCTGTATCTTT
128 AAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * *
134806 ATGAGAAGACTATTTTTACGATGCCTAATC-TAGAAAAGAATGTG-GATTAGTATGAGTATTC-A
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCAT-GAAAAGAATG-GAGATT-TTACGAG-AATCAA
* * ** * * * ** * *
134868 TGTTTATTTTTTTTAAGAG-ATAAACTTTTATTCT--ATCAATAACGGTGGAAAGACAAG-CTTC
62 TGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTAAAAAAATAA--G-GGAAAGAAAAGATTTC
** * * *
134929 TCTTGTGACACCAAAGCATCAATGTCATGTATCCTA
123 -CTTGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * *
134965 ATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGACTTTTACAAGAATCAATG
1 ATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAATG
** * * * **
135029 CATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAATAGATTTCCACGC
64 TTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-AAAAATAAGGGAAAGAAAAGATTTCCTTGC
* *
135094 AAAAG-AAAACATCAATATCATGTATCCTG
128 AAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * * **
135123 ATGAGGAA-AATGTATTTATAGTGCCTAGTCACGAAATGAATGAAGATCTTTGCTAGAATTTATG
1 ATGA-GAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT-TTTACGAGAATCAATG
* * ** * * ** ** * * * *
135187 TTTGTCTCATTTGAGGTATGAACTTAGAATTTGCAAAAATTGGTGGGAATAAATCG-TTT-GTTG
64 TTTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAG-GGAAAGAAA-AGATTTCCTTG
* * * * *
135250 CGAAACCAAATCATCAACATCCA-GTATCCTT
127 CAAAAGCAAAGCATCAATAT-CATGTATCCTA
* * * * * * * *
135281 ATGAGAAGACTATTTTTATGGTGCCTAATCCTGAAAAGAATAGG-TATTAGTAAGAGTATTC-AT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAAT-GGAGATT-TTACGAG-AATCAAT
* * ** * *
135344 GTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCATTAAT-GGTGGAAAGAAAAG-CTTCTC
63 GTTTGTCTCATTTAA-AGTACAAACTTTGATTTTA-AAAAAATAAG-GGAAAGAAAAGATTTC-C
* * * * *
135406 TTACGACACCAAAGCATCAATGTCATGTATCCTA
124 TTGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * *
135440 ATGA-AGAGAATGTG-TT-TGGTTCCTAATCTTGGAAAGAATGGAGACTTTTACGAGAATCAATG
1 ATGAGA-AGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAATG
* * * * * * * *
135502 CTTGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAGTGAGGCAAATAAAAGATTT-CTGGT
64 TTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-AAAAATAAGGGAAAGAAAAGATTTCCTTGC
* * *
135566 AAAAGAAAACCATCAATATCATTTATCCTA
128 AAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * ** * * *
135596 ATGGGGAGAATGCGTTTATAGTGCCTAATCACGAAATGAATAAAGATCCTTACTAGAATCCATGT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT-TTTACGAGAATCAATGT
* * * * ** * ** * * *
135661 TTGTCTGATTTGACGAATGAACTTAT-ACTTTACAAAAAATTGGTGGGAAG-AGAG-TGTTTCTT
65 TTGTCTCATTTAAAGTACAAACTT-TGATTTTA-AAAAAATAAG-GGAAAGAAAAGAT-TTCCTT
* * * * * * * * *
135723 ACAAAACCAAAGCATAAAAAACAAGCATCTTT
126 GCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * * *
135755 ATGAGAAGACTATGTTTCTAGTGCCTAAT-ATAGAAAAGAATATG-GATTGGTATGACTATTCAA
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCAT-GAAAAGAAT-GGAGATT-TTACGA-GAATCAA
* * * * * *
135818 -GTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTATAAATAAT-GGTGGAAAGAACAG-CTTCT
62 TGTTTGTCTCATTTAA-AGTACAAACTTTGATTTTA-AAAAAATAAG-GGAAAGAAAAGATTTC-
* * * *
135879 CTTGCGACATCAAAGCATCAATGTCATGTATCCTA
123 CTTGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * *
135914 ATGA-AGAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAAGGACACTTTTATGAGAATCAATG
1 ATGAGA-AGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAATG
*** * * * * *
135978 CAAGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC
64 TTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-AAAAATAAGGGAAAGAAAAGATTTCCTTGC
* * *
136043 AAAAGAAAACCATCAATATCATTTATCCTA
128 AAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * *
136073 ATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT-TTTACGAGAATCAATGT
* * * * * * * * *
136138 TTGTCTCATTTGAGGCACGAACTTGGAATTTACAAAAAT-TGGTAGGAA-AAAAGCATTT-CTTG
65 TTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAGG--GAAAGAAAAG-ATTTCCTTG
** * * * * *
136200 TGAAA-CTAAATCATCATTCTCTTGTAT-CTGT
127 CAAAAGC-AAAGCATCAATATCATGTATCCT-A
* * * * ** * *
136231 ATGAGAAGACTATGTTTA-GGTGCCTAATCCTAAAAAGAATAGG-GATTAGAATGAGTATTC-AT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAAT-GGAGATT-TTACGAG-AATCAAT
* * * ** * *
136293 G-TT-TCTC--TTAAGGGACAAATTTTGATTTT--ATCATTAATGGTAGAAA-AATAAG-CTTCT
63 GTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAA-GG--GAAAGAA-AAGATTTC-
* * * *
136350 GTTGTAACA-CAAAAGCATCAATGTCATGTATCCTA
123 CTTGCAAAAGC-AAAGCATCAATATCATGTATCCTA
* * * * * ** * * *
136385 ATGA-AGGGAATGTGTTTTTCGTTCCCAATTTTGGAAAGAATGAAGACTTTTATGAGAATCAATG
1 ATGAGA-AGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAATG
** * * * * *
136449 CATGTCTCTTTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC
64 TTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-AAAAATAAGGGAAAGAAAAGATTTCCTTGC
* * *
136514 AAAAGAAAACCATCAATATCATCTATCCTA
128 AAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * *
136544 ATAAGGAGAATGTGTTTATAGTGCCTAATCA-AAAAATGAATGAAGATCCTTACTAGAATCCATG
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA-GAATGGAGAT-TTTACGAGAATCAATG
* * * * * * ** * *
136608 TTTGTCTCATTTGAGGCACGAACTTAGAATTTT-CAAAAATTGGTGGGAAG-AAAG-TGTTTCTT
64 TTTGTCTCATTTAAAGTACAAACTTTG-ATTTTAAAAAAATAAG-GGAAAGAAAAGAT-TTCCTT
* *
136670 GCGAAAGCAAAGCATCAATATCATGTATCCTT
126 GCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * *
136702 ATGAGAAGACTATGTTTATGGTGCCTAATCCA-GAAAAGAATGGAGATTAGTATGA-ATATTC-A
1 ATGAGAAGAATGTGTTTATGGTGCCTAAT-CATGAAAAGAATGGAGATT-TTACGAGA-A-TCAA
* ** *
136764 TGTTTGTCTTATTTAAAAG-ACAAACTTTG-TTTCT--ATCAATAACGGTAGAAAGAAAAG-CTT
62 TGTTTGTCTCATTT-AAAGTACAAACTTTGATTT-TAAAAAAATAA-GG--GAAAGAAAAGATTT
* * * * *
136824 CTCTTGCGATAGTAAAGCATCAATGTCATGTATCATA
122 C-CTTGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * *
136861 ATGA-AAGGAATGTGTTTTTGGTTCCCAATCTTGAAAA-AATTGGAGACTTTTACGAGAATCAAT
1 ATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAAGAA-TGGAGA-TTTTACGAGAATCAAT
* * *
136924 GCTTGTCTCATTTAAAGTACAAACTTTAATTTTAAGAAAAATAAGGCAAAGAAAAGATTT-CTAT
63 GTTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-AAAAATAAGGGAAAGAAAAGATTTCCT-T
* * * *
136988 GCAAAAGAAAACCATAAATATCATTTATCCTA
126 GCAAAAGCAAAGCATCAATATCATGTATCCTA
* * *** * * * * * *
137020 ATGGGGAGAATGTGTTTACAATGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT-TTTACGAGAATCAATGT
* * * * * * * * *
137085 TTGTCTCATTTGAGGCACAAACATAGAATTTACAAAAAT-TGGTGAGAA-AAAAGCGTTT-CTTG
65 TTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAGG-GA-AAGAAAAG-ATTTCCTTG
** * * * *
137147 CGTAACCAAATCATCAATATCTTGTATCCTT
127 CAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * *
137178 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATG
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATT-TTACGAG-AATCAATG
* * * ** * * * *
137242 TTTGTCTTATTT-AAGTAACAAACTATGATTCTATCCATAA-CAGTAGAAAGAAAAG-CTTCTCT
64 TTTGTCTCATTTAAAGT-ACAAACTTTGATTTTA-AAAAAATAAG-GGAAAGAAAAGATTTC-CT
* *** *
137304 TGCGACCCCAAAGCATCAATGTCATGTATCCTA
125 TGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * ** * *
137337 ATGA-AAGGATTGTGTTTTTGGTTCCTAATCATCTAAAGATTGGAGACTTTTACAAGAATCAATG
1 ATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGA-TTTTACGAGAATCAATG
** * * * * * *
137401 CATGTCTTATTTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGC
64 TTTGTCTCATTTAAAGTACAAACTTTGATTTTAA-AAAAATAAGGGAAAGAAAAGATTTCCTTGC
* * * *
137466 AAAAGAAAATCATAAATATCATTTATCCTA
128 AAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * *
137496 ATGAGGAGAATGTGCTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT-TTTACGAGAATCAATGT
* * * * * * *
137561 TTGTCTCATTTAAGGCACGAA-TATAGAATTTACAAAAATTGATGGGAAA-AAAACG-TTT-CTT
65 TTGTCTCATTTAAAGTACAAACT-TTGATTTTA-AAAAAAT-AAGGGAAAGAAAA-GATTTCCTT
* * * * *
137622 GCGAAATCAAATCATCAATATCCTGTATCCTT
126 GCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * *
137654 ATGAGAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATG
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATT-TTACGAG-AATCAATG
* * ** * * *
137718 TTTGTCTTATTT-AAGCGACAAACTTTGATTTT--ATCATTAACGGTGAAAGGAAAAGCTTTTCT
64 TTTGTCTCATTTAAAG-TACAAACTTTGATTTTAAAAAAATAA-GG-GAAA-GAAAAGATTTCCT
** * *
137780 TGTGAGAGCAAAGCATCAATGTCATGTATCCTA
125 TGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * *
137813 ATGA-AGGGAATGTGCTT-TGG-GATCCCAGTCTTGGAAAGAATGGAAACTTTTATC-ATAATCA
1 ATGAGA-AGAATGTGTTTATGGTG--CCTAATCATGAAAAGAATGGAGA-TTTTA-CGAGAATCA
* ** * * ** * * * **
137874 AAGCATGTCTCATTTAAAGCACAAACTTTGA-TCTAAGGAAATGAGGCAAAGAAAATATTTTTTA
61 ATGTTTGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAGGGAAAGAAAAGATTTCCT-
* * * *
137938 ATGCAAAAGAAAACCATCAATATTATTTATCCTA
125 -TGCAAAAGCAAAGCATCAATATCATGTATCCTA
* * * * * * * * * *
137972 ATGAGGAGAATGCGTTTATAGTGTCTAACCACGAAATA-AATGAAGATGCTTGCTAGAATTC-AT
1 ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAA-AGAATGGAGAT-TTTACGAGAA-TCAAT
* * * * ** * * ** * *
138035 GTTTGTCTAATTTGAGGAATGAACTTATG-CTTTACAAAAATTGGTGGGAAG-AAAG-TGTTTCT
63 GTTTGTCTCATTTAAAGTACAAACTT-TGATTTTAAAAAAATAAG-GGAAAGAAAAGAT-TTCCT
* * ** *
138097 TGCAAAACCAAAGCATCAATATCATTTATTGTT
125 TGCAAAAGCAAAGCATCAATATCATGTATCCTA
138130 ATGAGAA-AATGATGTTTATGGTGCCTAATC
1 ATGAGAAGAATG-TGTTTATGGTGCCTAATC
138160 CAGAAAAAAA
Statistics
Matches: 3302, Mismatches: 1055, Indels: 531
0.68 0.22 0.11
Matches are distributed among these distances:
151 3 0.00
152 2 0.00
153 26 0.01
154 43 0.01
155 37 0.01
156 75 0.02
157 256 0.08
158 1076 0.33
159 1536 0.47
160 215 0.07
161 13 0.00
162 15 0.00
163 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATTTTACGAGAATCAATGTT
TGTCTCATTTAAAGTACAAACTTTGATTTTAAAAAAATAAGGGAAAGAAAAGATTTCCTTGCAAA
AGCAAAGCATCAATATCATGTATCCTA
Found at i:135345 original size:475 final size:475
Alignment explanation
Indices: 133378--149384 Score: 17740
Period size: 476 Copynumber: 33.4 Consensus size: 475
133368 TGGGGATTAG
133378 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * * * * *
133443 TTTGTCTTATTTAAGTGACAAACTTTGATTTTATTATTAAAGATGGAAAGAAAAGCTTTTCTTGT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * * * * * * * * * *
133508 GAGAGCAACGCATCAATGTCATGTATTCTAGTGAAGGGACTGTGCTTTGGGATCCCAGTCTTGGA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * *
133573 AAGAATGGAGACTTTTATGAGAATCAAAGCATGTCTCATTTAAAGCACAAACTTTGA-TCTAA-G
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* **
133636 AAAATGAGGCAAAGAAAAGATTTTAATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
261 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
* ** * * * *
133701 AGAATGCGTTTATAGTATCTAACCACAAAATGAATGAAGATCCTTGCTAGAATTCATGTTTGTCT
326 AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
* * * * * *
133766 AATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAA
391 CATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAA
*
133831 AGCATCAATATCATTTATCCT
456 AGCATCAATATCA-GTATCCT
* * * *
133852 TATGAGAAAACGATGTTTATGGTGCCTAAT-CTAGAAAAGAATGTGGATTAGTGTGAGTATTCAT
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCAT
* * * * *
133916 GTTTGTCTTATTTAAGAGTCAAATTTTGATTGTATCAATAATGGTGGAAAGACAAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * * * *
133981 TGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGTAATGGGTTTTTGGTTCCTAATCTTAA
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* *
134046 AAAGAATGGAGACTTTTACCAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAA
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
*
134111 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTAATGAG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * * * *
134176 GAGAATGTGTTTATAGTGCCTAATCACGAACTGGATGAAGATCCTTACAAGAATCTATGTTTGTA
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
134241 TCATTCGAGGCACAAACATAGAATTTACAAAAATTGGTGGGAAAAAAGCAG-TTCTTGCGAAGCC
390 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGC-GTTTCTTGCGAAACC
* * *
134305 AAATCATCAATTTCCTGTATCCT
454 AAAGCATCAATAT-CAGTATCCT
* *
134328 TATGAGAAGAGTAT-TTTGATGGTGCCTAAT-CTAGAAAAGAATGTGGATTAGTATGAGTATTCA
1 TATGAGAAGACTATGTTT-ATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCA
* * *
134391 TATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTGCTCTT
64 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTT
* * *
134456 GCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTTCCAATCTTA
129 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG
* * * *
134521 AAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTTATTTAATGTACAAACTTTAATTTTGA
194 AAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTT-A
* * * *
134586 AGGAAAATAAGGCAAAGAATAGATTTCCACGCAAAAGAAAACCATCAATATCATGTATCCTGATG
258 AGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG
* * * * *
134651 AGGAGAACGTATTTATAGTGGCTAGTCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
323 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
* *
134716 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCGTTTCGTGCGAAAC
388 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * *
134781 CAAACCATCAATATCCTGTATCTT
453 CAAAGCATCAATAT-CAGTATCCT
* * * *
134805 TATGAGAAGACTATTTTTACGATGCCTAAT-CTAGAAAAGAATGTGGATTAGTATGAGTATTCAT
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCAT
* * * * * *
134869 GTTTATTTTTTTTAAGAGATAAACTTTTATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* *
134934 TGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTAA
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
*
134999 AAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * *
135064 GAAAATAAGGCAAAGAATAGATTTCCACGCAAAAGAAAA-CATCAATATCATGTATCCTGATGAG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * * * * **
135128 GAAAATGTATTTATAGTGCCTAGTCACGAAATGAATGAAGATCTTTGCTAGAATTTATGTTTGTC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * * *
135193 TCATTTGAGGTATGAACTTAGAATTTGCAAAAATTGGTGGGAATAAATCGTTTGTTGCGAAACCA
390 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* *
135258 AATCATCAACATCCAGTATCCT
455 AAGCATCAATAT-CAGTATCCT
* * * *
135280 TATGAGAAGACTATTTTTATGGTGCCTAATCCTGAAAAGAATAGGTATTAGTAAGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
135345 TTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATTAATGGTGGAAAGAAAAGCTTCTCTTAC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* *
135410 GACACCAAAGCATCAATGTCATGTATCCTAATG-AAGAGAATGTG--TTTGGTTCCTAATCTTGG
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCTTGA
*
135472 AAAGAATGGAGACTTTTACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTAAG
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * * *
135537 GAAAGTGAGGCAAATAAAAGATTT-C-TGGTAAAAGAAAACCATCAATATCATTTATCCTAATGG
260 GAAAATAAGGCAAAGAAAAGATTTCCAT-GCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* *
135600 GGAGAATGCGTTTATAGTGCCTAATCACGAAATGAATAAAGATCCTTACTAGAATCCATGTTTGT
324 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * * * * * * * *
135665 CTGATTTGACGAATGAACTTATACTTTACAAAAAATTGGTGGGAAGAGAGTGTTTCTTACAAAAC
389 CTCATTTGAGGCACGAACTTAGAATTTAC-AAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * * * *
135730 CAAAGCATAAAAAACAAGCATCTT
453 CAAAGCATCAATATC-AGTATCCT
* * * ** * * *
135754 TATGAGAAGACTATGTTTCTAGTGCCTAAT-ATAGAAAAGAATATGGATTGGTATGACTATTCAA
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
135818 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAATAATGGTGGAAAGAACAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
*
135883 CGACATCAAAGCATCAATGTCATGTATCCTAATG-AAGAGAATGTGTTTTTGGTTCCCAATCTTG
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCTTG
* * * * *
135947 AAAAGAAAGGACACTTTTATGAGAATCAATGCAAGTCTCATTTAAAGTGCAAACTTTGATTTTAA
194 AAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
*
136012 GGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
259 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
136077 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
324 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * * * *
136142 CTCATTTGAGGCACGAACTTGGAATTTACAAAAATTGGTAGGAAAAAAGCATTTCTTGTGAAACT
389 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* * * *
136207 AAATCATCATTCTCTTGTAT-CT
454 AAAGCATCAATATC-AGTATCCT
* * *
136229 GTATGAGAAGACTATGTTTA-GGTGCCTAATCCTAAAAAGAATAGGGATTAGAATGAGTATTCAT
1 -TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * * * * * * *
136293 G-TT-TC-T-CTTAAGGGACAAATTTTGATTTTATCATTAATGGTAGAAA-AATAAGCTTCTGTT
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAA-AAGCTTCTCTT
** * * * *
136353 GTAACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTCGTTCCCAATTTTG
129 GCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTG
* * * *
136418 GAAAGAATGAAGACTTTTATGAGAATCAATGCATGTCTCTTTTAAAGTACAAACTTTGATTTTAA
194 AAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* * *
136483 GGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATCTATCCTAATAA
259 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
**
136548 GGAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
324 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * *
136613 CTCATTTGAGGCACGAACTTAGAATTTTCAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAAGC
389 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
136678 AAAGCATCAATATCATGTATCCT
454 AAAGCATCAATATCA-GTATCCT
* * *
136701 TATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGAGATTAGTATGAATATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
136766 TTTGTCTTATTTAAAAGACAAACTTTGTTTCTATCAATAACGGTAGAAAGAAAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* ** *
136831 GATAGTAAAGCATCAATGTCATGTATCATAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* *
136896 AA-AATTGGAGACTTTTACGAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTTAATTTTAAG
196 AAGAA-TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * *
136960 AAAAATAAGGCAAAGAAAAGATTTCTATGCAAAAGAAAACCATAAATATCATTTATCCTAATGGG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* *
137025 GAGAATGTGTTTACAATGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
137090 TCATTTGAGGCACAAACATAGAATTTACAAAAATTGGTGAGAAAAAAGCGTTTCTTGCGTAACCA
390 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* *
137155 AATCATCAATATCTTGTATCCT
455 AAGCATCAATATC-AGTATCCT
137177 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
137242 TTTGTCTTATTTAAGTA-ACAAACTATGATTCTATCCATAACAGTAGAAAGAAAAGCTTCTCTTG
66 TTTGTCTTATTTAAG-AGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * * * **
137306 CGACCCCAAAGCATCAATGTCATGTATCCTAATGAAAGGATTGTGTTTTTGGTTCCTAATCATCT
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * *
137371 AAAGATTGGAGACTTTTACAAGAATCAATGCATGTCTTATTTAAAGTACAAACTTTAATTTTAAG
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * *
137436 GAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATAAATATCATTTATCCTAATGAG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* *
137501 GAGAATGTGCTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
137566 TCATTTAAGGCACGAA-TATAGAATTTACAAAAATTGATGGGAAAAAAACGTTTCTTGCGAAATC
390 TCATTTGAGGCACGAACT-TAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* *
137630 AAATCATCAATATCCTGTATCCT
454 AAAGCATCAATAT-CAGTATCCT
*
137653 TATGAGAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
137718 TTTGTCTTATTTAAGCGACAAACTTTGATTTTATCATTAACGGT-GAAAGGAAAAGCTTTTCTTG
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAA-GAAAAGCTTCTCTTG
* * * * * * * * *
137782 TGAGAGCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTGGGATCCCAGTCTTGG
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * * *
137847 AAAGAATGGAAACTTTTATC-ATAATCAAAGCATGTCTCATTTAAAGCACAAACTTTGA-TCTAA
195 AAAGAATGGAGACTTTTA-CGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* * ** *
137910 GG-AAATGAGGCAAAGAAAATATTTTTTAATGCAAAAGAAAACCATCAATATTATTTATCCTAAT
259 GGAAAATAAGGCAAAGAAAAGA--TTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
* * * * * * *
137974 GAGGAGAATGCGTTTATAGTGTCTAACCACGAAATAAATGAAGATGCTTGCTAGAATTCATGTTT
322 GAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTT
* * * * * *
138039 GTCTAATTTGAGGAATGAACTTATG-CTTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCAAA
387 GTCTCATTTGAGGCACGAACTTA-GAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAA
* **
138103 ACCAAAGCATCAATATCATTTATTGT
451 ACCAAAGCATCAATATCA-GTATCCT
* * * * *
138129 TATGAGAA-AATGATGTTTATGGTGCCTAATCCAGAAAAAAATGTGGATTAGTGTGAGTATTCAT
1 TATGAGAAGACT-ATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * ** * * * * *
138193 GTTTTTCTTATTTAAAAGTTAAATTTTGATTCTATCAGTAATGGTGGAAAGACAAGCTTCTCTTA
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * * *
138258 CGACCCCAAAGCATCAATGTCATGTGTCCTAATGAAAGGAATGGGTTTTTGGTTCCTAATCTT-A
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* *** ** * * * ** *
138322 ACCAGAATGGAGACTTTGATTTTATCATCAAAGGTGGAAAAAAAAGCTTCTCCTGCAACA--CCA
195 A-AAGAATGGAGACTTT--TACGAGAATC-AA--T-G-----CATG--TCTCATTTAA-AGTACA
* ** * * * * ***** *
138385 AAGCATCAATGTCATGTATCCAAATGAAGG-AAATGAGTTTTTGTATCCTAAGCTTGAAAAGAAT
245 AA-CTTTGATTTTAAGGA---AAAT-AAGGCAAA-GAAAAGAT-T-TCC-ATGC---AAAAGAA-
* * * * * * * *
138449 GGGGACTTTTATGAGA-ATCAATGCCTGTCTCATTTAA--AGTACAAACTTTAGTTT-TAAG-G-
297 ---AAC---CATCA-ATATC-AT---T-TATC--CTAATGAGGA-GAA-TGT-GTTTAT-AGTGC
** * * * * * * * * * *
138508 AAAATAAGGGAAA-GAA--AAGAT-TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
344 CTAATCA-CGAAATGAATGAAGATCCTT-A--C--TAG-AATCCAT--GT-T--TGTCTCAT-TT
* * * * ***
138569 GAGG-A-GAACATGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATGT
396 GAGGCACGAAC----TTAGAAT---TTA-CA--AAA--ATTG--G-T---GGGAAGAA---A-G-
* * * * * ** * * *
138632 TTGTCTTATATGGGCAACGAACTCAT-ACTTTACAGAAAT--T
438 -CGT-TTCT-TGCGAAACCAAAGCATCAATAT-CAG-TATCCT
** * ** * *** * * * * * ** ****
138672 GGTGGGAAGCAAGCGTAT-CATACGAAACCAAAGCATCAATATCATGTATCCTTACG-A-GAAGT
1 TATGAGAAG--A-C-TATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGGATTA-GTATG-AGT
* * * * * * ** ** **
138734 GTTTATG-GTG-CTCAATCTTGAAAAGA-ATGGGAA-TTAGTATGAGTATTCAAGT--TTGTCTT
59 ATTCATGTTTGTCT-TAT-TT-AAGAGACA----AACTTTG-AT-TCTA-TCAA-TAACGGT-GG
* * * ** * * * * ** * *
138793 ATTTAAGATACAA-CTT-TGATTCCGTCAATAACG-GTGGAAAGAAAAGCT-TCTCTTGCAACAC
112 A---AAGA-A-AAGCTTCT-CTTGCGACACCAAAGCAT-CAATGTCATG-TATC-C-T---A-AT
* * * * * *****
138854 CAAAGCATCAATATCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAA
163 GAAAG---GAATGTGTT-T-T--T--GGTTCCCAA------------------TCTTGAAAAGAA
* *
138919 TGGAGACTTTTACGAGAATCAATGCATGTCTC-TCTGAAAGTACAAACTTTGATTTTAATGAAAA
201 TGGAGACTTTTACGAGAATCAATGCATGTCTCAT-TTAAAGTACAAACTTTGATTTTAAGGAAAA
* * * * *
138983 CAAGGCAAAAAAAAGATTTCCATGCGAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAA
265 TAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAA
* ** * * *
139048 TGTGTTTATTGTGCCTAATTTCGAAATGAATGAACATCCTTACTAGAATCCATATTTGTCTAATT
330 TGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATT
* * * * * * * * * *
139113 TTAGGAATGAACTTATACTTGACAAAAATAGGTGGGAAGAAAGTGTATCTTGCAAAACCAAAGCA
395 TGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCA
*
139178 TCAATATCCAGTATCTT
460 TCAATAT-CAGTATCCT
* * *
139195 TATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGGAGATTAGTATGATTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
139260 TTTGTCTTATTTATGAGACAAACTTTGATTCTATCAATAATGATGGAAAGACAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * *
139325 GACACCAAAGAATCAATGTCATGTATCCTAATGAATGGAATGTGGTTTTGGTTCCCAATC-TAAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * * *
139389 AACCAATGGAGACTTTTACAAGAATCGATACAT-TCTCATTTAAAGTACAAATTTTGATTTTAAG
196 AA-GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * * * *
139453 GAAAATAAGGCAAAGAAAAGATTTCTATGCAAAAGAAAACTATTAATATCATATATCTTGATG-G
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * *
139517 GAGAAAGTATTTATAGTGCCTAATCCCGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
*
139582 TCA-TT--GGCACGAACTTAGAATTTACAAAAATTGGTGGGAAAAAAGCGTTTCTTGCGAAACCA
390 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
*
139644 AACCATCAATATCCAGTATCCT
455 AAGCATCAATAT-CAGTATCCT
* * * * * *
139666 TATGAGAAGACTATTTTTACGATGCCTAAT-CTAGAAAAGAATGTGGACTAGTATGAGTTTTCAT
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
139730 GTTTATCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * * *
139795 CGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTGTGTTTGGTTCCAAATCTTAA
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * * * ** * *
139860 AAAGAATGGAGACTTTTACAATGTCCTAATGAAAGGAATGTGT--TTT-TGGTCCCCAA-TCTTG
195 AAAGAATGGAGACTTTTACGA-G----AAT-CAATGCATGTCTCATTTAAAGT-ACAAACT-TTG
** * * * **** * ** * **
139921 AAATGAATGGAGACTTTTAC-AAGAATCAATGCATGTCTCAT-TTAAAGTACAAA-CTTTGAT-T
252 ATTTTAA-GGAAAATAAGGCAAAGAA--AA-G-ATTTC-CATGCAAAAG-A-AAACCATCAATAT
* **** * **** * *** * * *
139982 --TTAAGGAAAATAAGGCAAAGAAAACATTT-TCA-TG-C-AA--AAGAAAACCATCAATATCAT
309 CATTTATCCTAATGAGG---AGAATGTGTTTAT-AGTGCCTAATCACGAAATGAATGAAGATCCT
* * * ** ** * * * * *
140039 GTATTTATAGTGCC-TAGTCCCGAAATGA-ATGAAGATCCTTACTAGAATTCATGTTTGTCTCAT
370 -TA-CTAGAAT-CCAT-GT-TTG-TCTCATTTG-AG--GC--AC--GAA--C---TTAG---AAT
* * * * * *
140102 TTGAGGCACGAACTTAGAATTTGCAA-AAATTGGTGGGAAAAAAACCGTTTCTTGCGAAACCAAA
414 TT-A--CA-AAAATT-G--GTGGGAAGAAA-------G--C------GTTTCTTGCGAAACCAAA
* *
140166 TCATCAATATCCAGTATCTT
457 GCATCAATAT-CAGTATCCT
* *
140186 TATGAGAAAGACTATGTTTGTGGTGCCTAATCCTGAAAAGAATGGGTATTAGTATGAGTATTCAT
1 TATGAG-AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* * *
140251 GTTTGTCTTATTTATGAGACAAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
*
140316 CGACACCAAAGCATCAATGTCATGTATCCTAAAG-AAGAGAATGTG--TTTGGTTCCCAATCTTG
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCCAATCTTG
* *
140378 GAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTGAAAGTACAAACTTTGATTTTAA
194 AAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* * * *
140443 TGAAAATAAGGCAATGAAAAGATTTCCATGTACAAGAAAACCATCAATATCATTTATCCTAATGA
259 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* * * *
140508 GGAGAATGTGTTTTTGGTGCCTAATCAAGAAATGAATGAAGATCCTTACTAGGATCCATGTTTGT
324 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* *
140573 CTCATTTGAGGTACGAACTTAGAATTTACAAAAATTGGTGGTAAGAAAGCGTTTCTTGCGAAACC
389 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
*
140638 AAAGCATCAATATTATGTATCCT
454 AAAGCATCAATATCA-GTATCCT
* * *
140661 TATTAGAAGACTATGTTTATGGTGCCTAATCCTCAAAAGAATGGGGATTAGTATGAGTATTCAAG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
140726 TTTGCCTTATTTAAGAGACAAACTTTGATTTTATCAATAATGTTGGAAAGAAAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * *
140791 GACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAACTTGGA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * **
140856 AAGAATGGAGACTTTTACGAGAATCAATGCTTGCCTCATTTAAAGTTTAAACTTTGATTTTAAGG
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* * * * *
140921 AAAGTAAGGCAAAGAAATA-ATTTTCAGGCAAAAGAAAACCATCAATATCATTTATCCTATTGGG
261 AAAATAAGGCAAAGAAA-AGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * *
140985 GAGAATGTATTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGCC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *** * * * * *
141050 ACATTTGAGGAATGAACTTATACCATACAAAAGTTGGCGGGAAGAAAGCGTTTGTTTCGAGACCA
390 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* *
141115 AAGCATCGACATCATGTATCCT
455 AAGCATCAATATCA-GTATCCT
* * * * * *
141137 TATGAGAAGATTATGTTT-TGGTGCCTAAT-CTAGAAAAGAAAGTGGATTAGCATGACTATTTAT
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCAT
* ** * *
141200 GTTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGGGAGAACAGTTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * * * *
141265 TGACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGGTCCCAATATTGA
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * *
141329 AAAGAATGGAGACTTTTACGGGAATCAATG-ATGTCTCAATTGAAGTACAAACTTTAATTTTAAG
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * * *
141393 GAAAACAAGTCAAAGAAAAGATTTCCAAGCAAAGGAAAACCATCAATATCATTTATCATAATGAG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * * * *
141458 GGGAATATGTTTAT-GCTGCCTAAACATGAAATGAATGAAGATCCTTACTGGAATCCATGTTTGT
325 GAGAATGTGTTTATAG-TGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * * *
141522 CTCATTGGAGGCACGAATTTAGAATTTACAAAAATGGGTGGGAAGAAAGTG-TTCTTGTGAAACC
389 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
141586 AAAGCATCAATATCATGTATCCT
454 AAAGCATCAATATCA-GTATCCT
* * *
141609 TATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGCT-TGAGTATTCAT
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGAGTATTCAT
* *
141673 GCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * * * *
141738 TGACACCAAAGAATCAATGTCATGTATCCTAATGAATGGAATGTGGTTTTGGTTCCCAATC-TAA
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * *
141802 AAACGAATGGAGACTTTTACAAGAATCCATGCATGTCTCATATAAAGTACAAACTTTGATTTTAT
195 AAA-GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* *
141867 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGA
259 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* * *
141932 GGAGAATGTGTTTAAAGTGCCTAATCATGAAAAGGAATGAAGATCCTTACTAGAATCCATGTTTG
324 GGAGAATGTGTTTATAGTGCCTAATCACG-AAATGAATGAAGATCCTTACTAGAATCCATGTTTG
* ** *
141997 TCTCATTCGAGGCACGAACTTAGAATTTACAAAAATTGAAGGGAAGAAATCGTTTCTTGCGAAAC
388 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
*
142062 CAAATCATCAATATCTAGTATCCT
453 CAAAGCATCAATATC-AGTATCCT
142086 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
142151 TTTGTCTTATTTAAGAGACAAACTTTGATTTTATC-ATCAAAGGTGGAAAAAAAAGCTTCTCCTG
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAT-AACGGTGGAAAGAAAAGCTTCTCTTG
* * * * *
142215 CAACACCAAAGCATCAATGTCATGTATCCAAATG-AAGGAAATGAGTTTTT-GTATCCTAAGCTT
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGG-AATGTGTTTTTGGT-TCCCAATCTT
* * *
142278 GAAAAGAATGGGGACTTTTATGAGAATCAATGCTTGTCTCATTTAAAGTACAAACTTT-AGTTTT
193 GAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGA-TTTT
* *
142342 AAGGAAAATAAGGGAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
257 AAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT
* * * *
142407 GAGGAGAATGGGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATGTTT
322 GAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTT
* * * * * * * * * *
142472 GTCTTATATG-GGCAACGAACTCATACTTTACAGAAATTGGTGGGAAGCAAGCGTATCATACGAA
387 GTCTCATTTGAGGC-ACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAA
*
142536 ACTAAAGCATCAATATCATGTATCCT
451 ACCAAAGCATCAATATCA-GTATCCT
* * * *
142562 TACGAGAAG----TGTTTATGGTG-CTCAATCTTGAAAAGAATGGGAATTAGTATGAGTATTCAA
1 TATGAGAAGACTATGTTTATGGTGCCT-AATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAT
* **
142622 GTTTGTCTTATTTAAGATAC-AACTTTGATTCCGTCAATAACGGTGGAAAGAAAAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
*
142686 CGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
*
142751 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTC-TCTGAAAGTACAAACTTTGATTTTAA
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCAT-TTAAAGTACAAACTTTGATTTTAA
* * * * * *
142815 TGAAAACAAGGCAAAAAAAAGATTTCCATGCGAAAGAAAACCATCAATATCATGTATCCTGATGA
259 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
** * *
142880 GGAGAATGTGTTTATAGTGCCTAATTTCGAAATGAATGAACATCCTTACTAGAATCCATATTTGT
324 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * * * * * * * * *
142945 CTAATTTTAGGAATGAACTTATACTTGACAAAAATAGGTGGGAAGAAAGTGTATCTTGCAAAACC
389 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* *
143010 AGAGCATCAATATCCAGTATCTT
454 AAAGCATCAATAT-CAGTATCCT
* * *
143033 TATGAGAAGACTATGTTTATGGTGCCTAATCCTTAAAAGAATGGAGATTAGTATGATTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * *
143098 TTTGTCTTATTTATGAGACAAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTTCTCCTAC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * * **
143163 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGGTTTTGGTTCTCAATCTAAAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * *
143228 AAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATATAAAGTACAAACTTTGATTTTATGA
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* * *
143293 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATGTATCCTGATGAGG
261 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
* * *
143358 AGAATGTGTTTATAGTGCCTAATCTCGAAATGAATGAAGATCCTTACTAGATTCCATGTTTATCT
326 AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
** *
143423 CATTTGAGGCACGAACTTAGAATTTACAAAAATT-ACGGGAA-AAAGCGTTTCTTGCGAAACTAA
391 CATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAA
* * * *
143486 ATCATCAATATCCTGAATCCG
456 AGCATCAATAT-CAGTATCCT
* * * *
143507 TATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGTTTAGTATGAGTATTCAAG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* ** * * * * * * * *
143572 TTTGTCTTATTTAAAAGAGGAATTTTTATTTTTTCGATAATGTTGGAAAGAAAAGCCTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * *
143637 GACATCGAAGCATCAATGTCATGTATCCTATTG-AAGGATTGTGTTTTTGGTTCCCAATCTTGAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
143701 AAGAATGGAGACTTTTACGAGAATCAATGCAT-TCTCATTTAAAGTACAAACTTTGATTTTAAGG
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* * *
143765 AAAATAATGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGA
261 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
* * * *
143830 AGAATATGTTTATAGTGCCTAATCATGAAATGAAAGAAGATCCTTACTAGAATCCTTGTTTGTCT
326 AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
* * *
143895 CATTTGAGGCAAGAACTTAGAA-TTACAAAAATTGGTGGGAAAAAAGCATTTCTTGCGAAACC-A
391 CATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAA
*
143958 AGTCATCAATATCATGTATCCG
456 AG-CATCAATATCA-GTATCCT
* ** * *
143980 TATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGTTGATTAGTATGTGTATTCATA
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * ** *
144045 TTTGTCTTATTTAAGAGATAAACTTTGATTTTATCAATAACATTGGAAAGAAAAGCTTCTCTTGT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * * *
144110 GACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGTGTGTTTGGTTCCTAATCTTGGA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * *
144175 AGGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTCATTTGAAGG
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* * * *
144240 AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAAAAAACCATCAACATCATTTATCCTAATGAGA
261 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
* * *
144305 AGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTCT
326 AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
* * * * * * * * * *
144370 TATCTT-A-GCAATGAACTAATACTTTACAAACATTGGGGGGAA-ACAAGCATATCTTAC-AACA
391 CAT-TTGAGGC-ACGAACTTAGAATTTACAAAAATTGGTGGGAAGA-AAGCGTTTCTTGCGAA-A
* *
144431 CCAAAGCGTTAATATCATGTATCCT
452 CCAAAGCATCAATATCA-GTATCCT
* * * * * *
144456 TACGAGAAGACTATGTTTATGGTGCCCAATCTTGAAAAAAATGGGAATTAGTATGAGTATTCAAG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
144521 TTTGTCTTATTTAAGAGAC-AACTTTCAATCTGTCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
*
144585 GACACCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * ** * * *
144650 AATAATGGAGACTTTTATGAGAATCAATAAATGTCTCACTGAAAGTACAAACTTTGATTTTAATG
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* *
144715 AAAACAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGG
261 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
* * * *
144780 AGAATGTGTTTACAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATTCATGGTTGTCT
326 AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
* * * * *
144845 TATTTGAGGCACGAACTTAGAA-TTACAAAAATTGATGGGAAAAAAGCATTTCTTGTGAAACCAA
391 CATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAA
* *
144909 ATCATCAATATCTTGTATCCT
456 AGCATCAATATC-AGTATCCT
*
144930 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCACG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
144995 TTTGTCTTATTTAAGAGATAAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * * *
145060 GACACCAAAGCTTCAATGTCATGTATCCTAA-CAAAGGGAATGTGTTTCTGGTTCCCAATCTTGG
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTTGGTTCCCAATCTTGA
* * * * *
145124 GAAGAATGAAGACTTTTACGAGAATCAATGCATGACCCATTTAAAGTACAAACCTTGATTTTAAG
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* *
145189 GTAAATAAGGCAAAGAAAGGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * * *
145254 GAGAATGGGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * * * * * *
145319 TTATCTT-A-GCAATGAACTCATACTTTACAAAGATTGGGGGGAA-ACAAGCGTATCTTACGAAA
390 TCAT-TTGAGGC-ACGAACTTAGAATTTACAAAAATTGGTGGGAAGA-AAGCGTTTCTTGCGAAA
* *
145381 CCAAAGCATCAATATCTTGTATCCC
452 CCAAAGCATCAATATC-AGTATCCT
* * * * *
145406 TACGAGAAGACTATGTTTATGGTGCCCAATCTTGAAAAGAATGGGAATTAGTATGAGTATTCAAG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
145471 TTTGTCTTATTTAAGAGAC-AACTTTGAATCTGTCAATAATGGTGGAAAGAAAAGCTGCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* *
145535 GACACCAAAGCATCAATGTCTTATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * *
145600 AAGAATGGAGACTTTTATGAGAATCAATGCATGTCTCACTGAAAGTACAAACTTTGATTTTAATG
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* *
145665 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGG
261 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
* * * * *
145730 AAAATGTGTTTATAGTGCCTAATCTCAAAAAGAATAAAGATCCTTACTAGAATCCATGTTTGTCT
326 AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
* * * * * * * *
145795 AATTTGAGGAATGAACTTATACTTGACAAAAATAGGTGGGAAGAAAGCGATTCTTGCGAAACCAA
391 CATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAA
* *
145860 AGCTTGAATATCATGTATCCT
456 AGCATCAATATCA-GTATCCT
* *
145881 TATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * *
145946 TTTGTTTTATTTAAAAGACAAACTTTGATTCTATTAATAACGGTAGAATGAAAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
*
146011 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * *
146076 AAGATTGGAGACTTTTACGAGAATCAATGCATGTCTTATTTAAAGTACAAACTTTGATTTTAAGA
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
*
146141 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGG
261 AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
*
146206 AGAATGTGTTTACAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
326 AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
* * * * * *
146271 CATTTGAGGCATGAACTTAGAA-TTACAAAAATCGATGGGAAAAAAACATTTCTTGCGAAACCAA
391 CATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAA
* *
146335 ATCATCAATATCTTGTATCCT
456 AGCATCAATATC-AGTATCCT
*
146356 TATGAGAAGACTATGTTTAT-GTTCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * *
146420 TTTGTCTTATTTAAGGGATAAACTTTGATTCTATCATTATCAGTGGAAAGAAAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * *
146485 GACACCAAAGCTTCAATGTCATGTATCCTAA-CAAAGGGAATGTGTTTCTGGTTCCCAATCTT-A
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTTGGTTCCCAATCTTGA
* * * *
146548 GGAAGAATGAAGACTTTTACGAGAATCAATGCATGACCCATTTAAAGTACAAACTTTGATTTTAA
195 -AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* *
146613 GGTAAATAAGGCAAAGAAAGGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
259 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* * * *
146678 GGAGAATGGGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGT
324 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * * * * * * **
146743 CTTATCTGA-GCAATGAAC-TCGTACTTTACGAAAATTGGTGGGAAGCAAGCGTATCTTATGAAA
389 CTCATTTGAGGC-ACGAACTTAG-AATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAA
146806 CCAAAGCATCAATATCATGTATCCT
452 CCAAAGCATCAATATCA-GTATCCT
* * * * * *
146831 TATGAGAAGACTATGGTTATGGTGCCCAATCCTAAAAAGCATGGGGGTTAGTATGAGTATTCAAG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * * * *
146896 TTTGTCATATTTAAGAGAC-AACATTGATTCCATCAAAAATGGTGGAAAGAAAAGCTACTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* *
146960 GACACCAAAGCATCAATGTCTTGTATCCTAATGAACGGAATGTGTTTTTGG-TCTCCAATCTTGA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTC-CCAATCTTGA
* * *
147024 AAAGAATGGAGTCTTTTACGAGAATCAATGCATGTCTCATTAAAAGTACAAACTTTGATTTTAAT
195 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * *
147089 GAAAATAAGGCAATGAAAAGATTTCCATGTACAAGAAAACCATCAATATCATTTATCCTAACGAG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * *
147154 GAGAATGTGTTTATAGTGCCTAATCGA-GAAATGAATGAAGATCATTACTAGGATCCATGTTAGT
325 GAGAATGTGTTTATAGTGCCTAATC-ACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
*
147218 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGTAAGAAAGCGTTTCTTGCGAAACC
389 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
*
147283 AAAGCATCAATATTATGTATCCT
454 AAAGCATCAATATCA-GTATCCT
* *
147306 TATTAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCAAG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * *
147371 TTTGCCTTATTGAAGAGACAAACTTTGATTTTATCAATAACGATGGAAAGAAAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
* * *
147436 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGGA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * * * *
147501 AAGAATTGAGTCTTTTACGAGAATCAATGCTTGCCTCATTTAAAGTTCAAACTTTGATTTTAAGG
196 AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
* * * * * *
147566 AAAGTGAGGCAAAGAAATA-ATTTTCAGGCAAAAGAAAACCATCAATATCATTTATCCTATTGGG
261 AAAATAAGGCAAAGAAA-AGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
*
147630 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGCC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *** * * * *
147695 TCATTTGAGGAATGGACTTATACCATAGAAAAGTTGGTGGGAAGAAAGCTTTTCTTTCGAAACCA
390 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* *
147760 AAGCATCGACATCATGTATCCT
455 AAGCATCAATATCA-GTATCCT
* * * * * * *
147782 TATGAGAACACTATGTTTATGGTGCCTAAT-CTATAAAAGAAAGTGGACTAGTATGACTATTTAT
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCAT
* * ** *
147846 GTTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGGGAGAACAGCTTCTCTTG
65 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * *
147911 TGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGGTCCCAATCTTGA
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGA
* * *
147976 AAAGAGTGGAGACTTTTAC-AGGAATCAATGCATGTCTCATTTGAAGTACAAACTTTAATTTTAA
195 AAAGAATGGAGACTTTTACGA-GAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* * * * * *
148040 GAAAAACAAGTCAAAGAAAAGATTTCCAAGCAAAGGAAAACCATCAATATCATTTATCATAAT--
259 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* * * * *
148103 -GAGAATGTGTTTCTACTGCCTAAACATGAAATGAATGAAGATCCTTACTGGAATCCATGTTTGT
324 GGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * *
148167 CTCATTGGAGGCACGAACTTAGAATTTACAAAAATTGGCGAGAAGAAAGTG-TTCTTGCGAAACC
389 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
148231 AAAGCATCAATATCATGTATCCT
454 AAAGCATCAATATCA-GTATCCT
* * * *
148254 TATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTTTGAGTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
148319 CTTGTCTTATTTAAGAGACAAACATTGATAT-TATCAATAATGGTGGAAAGAAAAGCTTCTCTTG
66 TTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTG
* * * * **
148383 TGACACCAAAGCATCAATGTCAAGCATCCTAAT-AAAGGGAATGTGTTCTTGGTTCCCAAAATT-
130 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAA-GGAATGTGTTTTTGGTTCCCAATCTTG
* *
148446 AGAAAGAATTGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
194 A-AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTA
** * * *
148511 AGGAAAACGAGGCAAATAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATG
258 AGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG
* * * * ** *
148576 AGAAGAATGTGTTTATAGTCCCTAATCTCGAAAAGAATGAAGATCCTTAAAAGAATCTATGTTTG
323 AGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
* * * * * * * * * *
148641 TCTAATTTGAGGAATGAATTTATACTTGACAAAAATTGTTGGGAAGAAAGCGTATCTTGCAAAAC
388 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
148706 CAAAGCATCAATATCATGTATCCT
453 CAAAGCATCAATATCA-GTATCCT
* * * * * * *
148730 TATGAGAAGACAATGTTCATGGTGCCTAATCTTGAAAAGAATGGGGTTTAGTGTGAATATTCATT
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * *
148795 TTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTTCTCTTGC
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
148860 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * *
148925 ATGAATGGAGACTTTTA-TAGGAACCAATGCAT-TCTCATTTAAAGTACAAACTTTGATTTTAAG
196 AAGAATGGAGACTTTTACGA-GAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
** * **
148988 GAAAACGAGGCAAAGAAAAGATTTACATGCAGCAGAAAACCATCAATATCATTTATCCTAATGAG
260 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* *
149053 GAGAATGTGTTTATAGTGCCTAATCGCAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
325 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
** ** * * * * * * *
149118 AAATTTGAGAAATGAACTTATACTTGACAAAAATTGGTGGGAAGAAAGTGTATCTTGCAAAACCA
390 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
149183 AAGCATCAATATCATGTATCCT
455 AAGCATCAATATCA-GTATCCT
* * * *
149205 TATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAAAGTGGATTAGTATGACTATTCATG
1 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
* * * ** * **
149270 TTTGTCTTTTTTAAGAGACAAACTTTGATTGTATCAATAATGGTGGGGAGAACAGCTTCTCTTAT
66 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
*
149335 GACACCAAAGCATCAATGTCATGTATCCTAAAG-AAGAGAATGTGTTTTTG
131 GACACCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTG
149385 ATGAGAACCA
Statistics
Matches: 13135, Mismatches: 1967, Indels: 861
0.82 0.12 0.05
Matches are distributed among these distances:
470 5 0.00
471 967 0.07
472 669 0.05
473 858 0.07
474 1448 0.11
475 2974 0.23
476 4218 0.32
477 932 0.07
478 26 0.00
479 12 0.00
480 14 0.00
481 11 0.00
482 17 0.00
483 1 0.00
485 1 0.00
487 3 0.00
488 4 0.00
489 16 0.00
490 6 0.00
491 4 0.00
492 4 0.00
493 4 0.00
494 11 0.00
495 8 0.00
496 11 0.00
498 1 0.00
499 15 0.00
500 6 0.00
502 3 0.00
503 10 0.00
504 5 0.00
505 3 0.00
506 11 0.00
507 4 0.00
508 4 0.00
509 24 0.00
510 31 0.00
511 21 0.00
512 16 0.00
513 40 0.00
514 22 0.00
515 39 0.00
516 6 0.00
517 1 0.00
518 7 0.00
519 56 0.00
520 71 0.01
521 165 0.01
522 10 0.00
523 14 0.00
525 1 0.00
526 3 0.00
527 2 0.00
529 8 0.00
531 3 0.00
532 1 0.00
533 2 0.00
534 1 0.00
535 2 0.00
537 8 0.00
539 2 0.00
540 3 0.00
541 1 0.00
543 15 0.00
544 6 0.00
545 20 0.00
546 24 0.00
547 20 0.00
548 8 0.00
549 2 0.00
550 3 0.00
551 10 0.00
552 12 0.00
553 14 0.00
554 10 0.00
555 6 0.00
556 11 0.00
557 20 0.00
558 4 0.00
559 4 0.00
560 6 0.00
562 1 0.00
563 7 0.00
566 5 0.00
567 7 0.00
568 1 0.00
570 4 0.00
571 3 0.00
572 4 0.00
573 6 0.00
574 6 0.00
576 2 0.00
577 13 0.00
578 4 0.00
579 2 0.00
584 1 0.00
585 1 0.00
587 2 0.00
588 5 0.00
590 18 0.00
591 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATG
TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGC
GACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAA
AAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGG
AAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGG
AGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCT
CATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAA
AGCATCAATATCAGTATCCT
Found at i:138411 original size:119 final size:119
Alignment explanation
Indices: 138217--138457 Score: 292
Period size: 119 Copynumber: 2.0 Consensus size: 119
138207 AAAGTTAAAT
* * * * * *
138217 TTTGATTCTATCAGTAATGGTGGAAAGACAAGCTTCTCTTACGACCCCAAAGCATCAATGTCATG
1 TTTGATTCTATCAGTAAAGGTGGAAAAAAAAGCTTCTCCTACAACACCAAAGCATCAATGTCATG
* * * * *
138282 TGTCCTAATGAAAGG-AATGGGTTTTTGGT-TCCTAATCTT-AACCAGAATGGAGAC
66 TATCCAAATG-AAGGAAATGAGTTTTT-GTATCCTAAGCTTGAA-AAGAATGGAGAC
* *
138336 TTTGATTTTATCA-TCAAAGGTGGAAAAAAAAGCTTCTCCTGCAACACCAAAGCATCAATGTCAT
1 TTTGATTCTATCAGT-AAAGGTGGAAAAAAAAGCTTCTCCTACAACACCAAAGCATCAATGTCAT
*
138400 GTATCCAAATGAAGGAAATGAGTTTTTGTATCCTAAGCTTGAAAAGAATGGGGAC
65 GTATCCAAATGAAGGAAATGAGTTTTTGTATCCTAAGCTTGAAAAGAATGGAGAC
138455 TTT
1 TTT
138458 TATGAGAATC
Statistics
Matches: 104, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
118 7 0.07
119 95 0.91
120 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (119 bp):
TTTGATTCTATCAGTAAAGGTGGAAAAAAAAGCTTCTCCTACAACACCAAAGCATCAATGTCATG
TATCCAAATGAAGGAAATGAGTTTTTGTATCCTAAGCTTGAAAAGAATGGAGAC
Found at i:139918 original size:62 final size:62
Alignment explanation
Indices: 139821--139942 Score: 190
Period size: 62 Copynumber: 2.0 Consensus size: 62
139811 ATGTCATGTA
*
139821 TCCTAATAAAAGGAATGTGTGTTTGGTTCCAAATCTTAAAAAGAATGGAGACTTTTACAATG
1 TCCTAATAAAAGGAATGTGTGTTTGGTCCCAAATCTTAAAAAGAATGGAGACTTTTACAATG
* * * * *
139883 TCCTAATGAAAGGAATGTGTTTTTGGTCCCCAATCTTGAAATGAATGGAGACTTTTACAA
1 TCCTAATAAAAGGAATGTGTGTTTGGTCCCAAATCTTAAAAAGAATGGAGACTTTTACAA
139943 GAATCAATGC
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 54 1.00
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.33
Consensus pattern (62 bp):
TCCTAATAAAAGGAATGTGTGTTTGGTCCCAAATCTTAAAAAGAATGGAGACTTTTACAATG
Found at i:140837 original size:159 final size:157
Alignment explanation
Indices: 140085--149381 Score: 3291
Period size: 159 Copynumber: 58.7 Consensus size: 157
140075 CCTTACTAGA
* * * * * * *
140085 ATTCATGTTTGTCTCATTTGAG-GCACGAACTTAGAATTT-GCAAAAATTGGTGGGAAA-AAAAC
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGT-GGAAAGAAAAG
* * * * * * *
140147 CGTTTCTTGCGAAACCAAATCATCAATATCCA-GTATCTTTATGAGAAAGACTATGTTTGTGGTG
63 C-TTTCTTGCGAAACCAAAGCATCAATAT-CATGTATCCTAATGAG--GGAATGTGTTTATGGTG
*
140211 CCTAATCCTGAAAAGAATGG-GTATTAGTATGAGT
124 CCTAATCCTGAAAAGAATGGAG-ATTATTATGAGT
* ** *
140245 ATTCATGTTTGTCTTATTTATGAGACAAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * *
140310 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGAGAATGTG-TT-TGGTTCCCAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* * *
140373 TCTTGGAAAGAATGGAGACTT-TTACGAG-
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
* ** * * * * * *
140401 AATCAATGCATGTCTCATTGAA-AGTACAAACTTTGATTTTAAT-GAAAATAAG-GCAATGAAAA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTT-ATCAAAAAT-GGTGGAAAGAAAA
* * * ** * * *
140463 GATTTCCATG-TACAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTTTGGTG
62 GCTTT-CTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTG
** * * ** *
140527 CCTAATCAAGAAATGAATGAAGATCCTTACT-AGG
124 CCTAATCCTGAAAAGAATGGAGATTATTA-TGAGT
* * * * * * *
140561 ATCCATGTTTGTCTCATTTGAG-GTACGAACTTAGAATTTA-CAAAAATTGGTGGTAAG-AAAGC
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGC
* * * * * *
140623 GTTTCTTGCGAAACCAAAGCATCAATATTATGTATCCTTATTAGAAGACTATGTTTATGGTGCCT
64 -TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCT
* * *
140688 AATCCTCAAAAGAATGGGGATTAGTATGAGT
127 AATCCTGAAAAGAATGGAGATTATTATGAGT
* * * *
140719 ATTCAAGTTTGCCTTATTTAAGAGACAAACTTTGATTTTATCAATAATGTTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * *
140784 CTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* * * *
140849 ACTTGGAAAGAATGGAGACTT-TTACGAG-
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
* * * * ** *** * * *
140877 AATCAATGCTTGCCTCATTTAA-AGTTTAAACTTTGATTTTAAGGAAAGTAAG-GCAAAGAAATA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAA-A
** ** * ** * * * * * *
140940 ATTTTCAGGCAAAAGAAAACCATCAATATCATTTATCCTATTGGGGAGAATGTATTTATAGTGCC
62 GCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* * * ** *
141005 TAATCATGAAATGAATGAAGATCCTTACT-AGA
126 TAATCCTGAAAAGAATGGAGATTATTA-TGAGT
* * ** * *** * * *
141037 ATCCATGTTTGCCACATTTGAG-GA-ATGAAC-TT-ATACCATACAAAAGTTGGCGGGAAG-AAA
1 ATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTTAT-CAAAA-ATGGTGGAAAGAAAA
* * * * * * * * *
141097 GCGTTTGTTTCGAGACCAAAGCATCGACATCATGTATCCTTATGAGAAGATTATGTTT-TGGTGC
62 GC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGC
* ** *
141161 CTAAT-CTAGAAAAGAAAGTG-GATTAGCATGACT
125 CTAATCCT-GAAAAGAATG-GAGATTATTATGAGT
* * * * * ** * *
141194 ATTTATGTTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGGGAGAACAGTTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * *
141259 CTCTTGTGACACAAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TGG-GTCCCA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTG-CCTA
** * *
141322 ATATTGAAAAGAATGGAGACTT-TTACG-GG
128 ATCCTGAAAAGAATGGAGA-TTATTATGAGT
* * * * * * ** * *
141351 AATCAATG-ATGTCTCAATTGAAG-TACAAACTTTAATTTTAAGGAAAACA-AGT-CAAAGAAAA
1 ATTC-ATGTTTGTCT-TATTTAAGAGACAAACTTTGATTTT-ATCAAAA-ATGGTGGAAAGAAAA
* ** ** * * * * *
141412 GATTTCCAAGC-AAAGGAAAACCATCAATATCATTTATCATAATGAGGGGAATATGTTTATGCTG
62 GCTTT-CTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGA-GGGAATGTGTTTATGGTG
* * * * ** *
141476 CCTAAACATGAAATGAATGAAGATCCTTACTG-GA
124 CCTAATCCTGAAAAGAATGGAGATTATTA-TGAGT
* * ** * * *
141510 ATCCATGTTTGTCTCATTGGAG-GCACGAA-TTTAGAATTTA-CAAAAATGGGTGGGAAG-AAAG
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTT-GATTTTATCAAAAAT-GGTGGAAAGAAAAG
* * * * * *
141571 -TGTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGACTATGTTTATGGTGCC
63 CT-TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCC
* *
141635 TAATCCAGAAAAGAATGTG-GATTAGCT-TGAGT
126 TAATCCTGAAAAGAATG-GAGATTA-TTATGAGT
* * *
141667 ATTCATGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * * *
141732 CTCTTGTGACACCAAAGAATCAATGTCATGTATCCTAATGAATGGAATGTGGTTT-TGGTTCCCA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGT-GTTTATGGTGCCTA
* ** *
141796 AT-CTAAAAACGAATGGAGACTT-TTACAAGA
128 ATCCTGAAAA-GAATGGAGA-TTATTATGAGT
* ** * * ** * * *
141826 ATCCATGCATGTCTCATATAA-AGTACAAACTTTGATTTTATGGAAAATAAG-GCAAAGAAAAGA
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGC
* * ** * * **
141889 TTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTAAAGTGCCT
64 TTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCT
* * ** *
141954 AATCATGAAAAGGAATGAAGATCCTTACT-AGA
127 AATCCTGAAAA-GAATGGAGATTATTA-TGAGT
* * ** * * * ** * *
141986 ATCCATGTTTGTCTCATTCGAG-GCACGAACTTAGAATTTA-CAAAAATTGAAGGGAAG-AAATC
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGC
* * * * *
142048 GTTTCTTGCGAAACCAAATCATCAATATC-TAGTATCCTTATGAGAAGACTATGTTTATGGTGCC
64 -TTTCTTGCGAAACCAAAGCATCAATATCAT-GTATCCTAATGAG-GGAATGTGTTTATGGTGCC
* *
142112 TAATCCTGAAAAGAATGGGGATTAGTATGAGT
126 TAATCCTGAAAAGAATGGAGATTATTATGAGT
* *
142144 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCATCAAA-GGTGGAAAAAAAAGCT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA-AAAATGGTGGAAAGAAAAGCT
* * * * * * *
142208 TCTCCTGC-AACACCAAAGCATCAATGTCATGTATCCAAATGAAGGAAATGAGTTT-TTGTATCC
65 T-TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGT-GCC
* * *
142271 TAAGCTTGAAAAGAATGGGGACTT-TTATGAG-
126 TAATCCTGAAAAGAATGGAGA-TTATTATGAGT
* * * *** *
142302 AATCAATGCTTGTCTCATTTAA-AGTACAAACTTT-AGTTTTAAGGAAAATAAG-GGAAAGAAAA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTTTATCAAAAAT-GGTGGAAAGAAAA
* * * ** * * * *
142364 GATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGGGTTTATAGTGC
62 G-CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGC
* * * *** ** *
142429 CTAATCATGAAATGAATGAAGATCCCTACAAGA
125 CTAATCCTGAAAAGAATGGAGATTATTATGAGT
* * ** * * * * * *
142462 ATCCATGTTTGTCTTATATGGGCA-ACGAACTCAT-ACTTTA-CAGAAATTGGTGGGAAG-CAAG
1 ATTCATGTTTGTCTTATTTAAG-AGACAAACT-TTGATTTTATCA-AAAATGGTGGAAAGAAAAG
* * * * * *
142523 CGTATCATACGAAACTAAAGCATCAATATCATGTATCCTTACGA--GAA-GTGTTTATGGTG-CT
63 C-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCCT
* *
142584 CAATCTTGAAAAGAATGG-GAATTAGTATGAGT
127 -AATCCTGAAAAGAATGGAG-ATTATTATGAGT
* * *** * *
142616 ATTCAAGTTTGTCTTATTTAAGATAC-AACTTTGATTCCGTCAATAACGGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * * *
142680 CTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* *
142745 TCTTGAAAAGAATGGAGACTT-TTACGAG-
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
* ** * * * * * *
142773 AATCAATGCATGTCTCT-CTGAA-AGTACAAACTTTGATTTTAATGAAAACA-AG-GCAAAAAAA
1 ATTC-ATGTTTGTCT-TATTTAAGAG-ACAAACTTTGATTTT-ATCAAAA-ATGGTGGAAAGAAA
* * ** * * *
142834 AGATTTCCATGCGAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTG
61 AGCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTG
* * * * ** *
142899 CCTAAT-TTCGAAATGAATGAACATCCTTACT-AGA
124 CCTAATCCT-GAAAAGAATGGAGATTATTA-TGAGT
* * * * * * *
142933 ATCCATATTTGTCTAATTTTAG-GA-ATGAACTTAT-ACTTGA-CAAAAATAGGTGGGAAG-AAA
1 ATTCATGTTTGTCTTATTTAAGAGACA--AACTT-TGATTTTATCAAAAAT-GGTGGAAAGAAAA
* * * * * * *
142993 G-TGTATCTTGCAAAACCAGAGCATCAATATCCA-GTATCTTTATGAGAAGACTATGTTTATGGT
62 GCT-T-TCTTGCGAAACCAAAGCATCAATAT-CATGTATCCTAATGAG-GGAATGTGTTTATGGT
* * *
143056 GCCTAATCCTTAAAAGAATGGAGATTAGTATGATT
123 GCCTAATCCTGAAAAGAATGGAGATTATTATGAGT
* * * * * *
143091 ATTCATGTTTGTCTTATTTATGAGACAAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * *
143156 CTCCTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGGTTT-TGGT-TCTC
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGT-GTTTATGGTGCCT-
* **
143219 AAT-CTAAAAAAGAATGGAGACTT-TTACAAG-
127 AATCCT-GAAAAGAATGGAGA-TTATTATGAGT
* ** * * * * *
143249 AATCAATGCATGTCTCATATAA-AGTACAAACTTTGATTTTATGAAAAATAAG-GCAAAGAAAAG
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAG
* * * ** * * *
143312 ATTTCCATGCAAAAGAAAATCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATAGTGCC
63 CTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* * **
143377 TAAT-CTCGAAATGAATGAAGATCCTTACT-AG-
126 TAATCCT-GAAAAGAATGGAGATTATTA-TGAGT
* * * * * * *** *
143408 ATTCCATGTTTATCTCATTTGAG-GCACGAACTTAGAATTTA-CAAAAATTACGG-GA-AAAAGC
1 ATT-CATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGC
* * * * * * * *
143469 GTTTCTTGCGAAACTAAATCATCAATATCCTGAATCCGT-ATAAGAAGACTATGTTTATGGTGCC
64 -TTTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TAATGAG-GGAATGTGTTTATGGTGCC
* *
143533 TAATCCTGAAAAGAATAGG-GTTTAGTATGAGT
126 TAATCCTGAAAAGAAT-GGAGATTATTATGAGT
* * ** * * * * * *
143565 ATTCAAGTTTGTCTTATTTAAAAGAGGAATTTTTATTTTTTCGATAATGTTGGAAAGAAAAGCCT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAG-CT
* * * * * * * * * * *
143630 CTCTTGCGACATCGAAGCATCAATGTCATGTATCCTATTGAAGGATTGTGTTTTTGGTTCCCAAT
65 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCCTAAT
* *
143695 CTTGAAAAGAATGGAGACTT-TTACGAG-
130 CCTGAAAAGAATGGAGA-TTATTATGAGT
* ** * *** ** *
143722 AATCAATGCAT-TCTCATTTAA-AGTACAAACTTTGATTTTAAGGAAAATAATGCAAAGAAAAGA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAG-
* * * ** * * * * *
143785 TTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATAGTGCCT
63 CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCT
* * * * ** *
143850 AATCATGAAATGAAAGAAGATCCTTACT-AGA
127 AATCCTGAAAAGAATGGAGATTATTA-TGAGT
* * * * * * *
143881 ATCCTTGTTTGTCTCATTT--GAGGCAAGAACTTAGA-ATTA-CAAAAATTGGTGGGAA-AAAAG
1 ATTCATGTTTGTCTTATTTAAGAGAC-A-AACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAG
* * *
143941 CATTTCTTGCGAAACC-AAGTCATCAATATCATGTATCCGT-ATGAGAAGACTATGTTTATGGTG
63 C-TTTCTTGCGAAACCAAAG-CATCAATATCATGTATCC-TAATGAG-GGAATGTGTTTATGGTG
* ** * *
144004 CCTAATCTTGAAAAGAATGTTGATTAGTATGTGT
124 CCTAATCCTGAAAAGAATGGAGATTATTATGAGT
* *
144038 ATTCATATTTGTCTTATTTAAGAGATAAACTTTGATTTTATCAATAACAT--TGGAAAGAAAAGC
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAA-AA-ATGGTGGAAAGAAAAGC
* * * * *
144101 TTCTCTTGTGACACCAAAGCATTAATGTCATGTATCCTAATGAAGGGAATGTGTGTT-TGGTTCC
64 TT-TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGT-TTATGGTGCC
* * * *
144165 TAATCTTGGAAGGAATGGAGACTT-TTACGAG-
126 TAATCCTGAAAAGAATGGAGA-TTATTATGAGT
* ** * * * * *** * *
144196 AATCAATGCATGTCTCATTTAA-AGTGCAAACTTTCATTTGAAGGAAAATAAG-GCAAAGAAAAG
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAG
* * * ** * * * * *
144259 ATTTTCATGCAAAAAAAAACCATCAACATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCC
63 -CTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCC
* * * *** ** *
144324 TAATCATGAAATGAATGAAGATCCCTACAAGA
126 TAATCCTGAAAAGAATGGAGATTATTATGAGT
* ** * * * * * *
144356 ATCCATGTTTGTCTTATCTT-AGCA-ATGAACTAAT-ACTTTA-CAAACATTGGGGGGAA-ACAA
1 ATTCATGTTTGTCTTAT-TTAAG-AGACAAACT-TTGATTTTATCAAA-AATGGTGGAAAGAAAA
* * * * * * * * *
144416 GCATATCTTAC-AACACCAAAGCGTTAATATCATGTATCCTTACGAGAAGACTATGTTTATGGTG
62 GC-TTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTG
* * * *
144480 CCCAATCTTGAAAAAAATGG-GAATTAGTATGAGT
124 CCTAATCCTGAAAAGAATGGAG-ATTATTATGAGT
* * * * * * *
144514 ATTCAAGTTTGTCTTATTTAAGAGAC-AACTTTCAATCTGTCAATAACGGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * * *
144578 CTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* *
144643 TCTTGAAAATAATGGAGACTT-TTATGAG-
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
* *** * * * * * *
144671 AATCAATAAATGTCTCACTGAA-AGTACAAACTTTGATTTTAATGAAAACA-AG-GCAAAGAAAA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTT-ATCAAAA-ATGGTGGAAAGAAAA
* * * ** * * * **
144733 GATTTCCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGC
62 GCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGC
* * * ** *
144798 CTAATCATGAAATGAATGAAGATCCTTACT-AGA
125 CTAATCCTGAAAAGAATGGAGATTATTA-TGAGT
* * * * * * *
144831 ATTCATGGTTGTCTTATTTGAG-GCACGAACTTAGA-ATTA-CAAAAATTGATGGGAA-AAAAGC
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGC
* * * * * * *
144892 ATTTCTTGTGAAACCAAATCATCAATATCTTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
64 -TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCT
* *
144957 AATCCTGAAAAGAATGGGGATTAGTATGAGT
127 AATCCTGAAAAGAATGGAGATTATTATGAGT
* * ** *
144988 ATTCACGTTTGTCTTATTTAAGAGATAAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * ** * * *
145053 CTCTTGCGACACCAAAGCTTCAATGTCATGTATCCTAACAAAGGGAATGTGTTTCTGGTTCCCAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA-TGAGGGAATGTGTTTATGGTGCCTAA
* ** * *
145118 TCTTGGGAAGAATGAAGACTT-TTACGAG-
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
* ** * ** * **** * * *
145146 AATCAATGCATGACCCATTTAA-AGTACAAACCTTGATTTTAAGGTAAATAAG-GCAAAGAAAGG
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAG
* * * ** * * * *
145209 ATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGGGTTTATAGTGCC
63 CTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* * * *** ** *
145274 TAATCATGAAATGAATGAAGATCCCTACAAGA
126 TAATCCTGAAAAGAATGGAGATTATTATGAGT
* ** * * * * * *
145306 ATCCATGTTTGTCTTATCTT-AGCA-ATGAACTCAT-ACTTTA-CAAAGATTGGGGGGAA-ACAA
1 ATTCATGTTTGTCTTAT-TTAAG-AGACAAACT-TTGATTTTATCAAA-AATGGTGGAAAGAAAA
* * * * * * *
145366 GCGTATCTTACGAAACCAAAGCATCAATATCTTGTATCCCT-ACGAGAAGACTATGTTTATGGTG
62 GC-TTTCTTGCGAAACCAAAGCATCAATATCATGTAT-CCTAATGAG-GGAATGTGTTTATGGTG
* * *
145430 CCCAATCTTGAAAAGAATGG-GAATTAGTATGAGT
124 CCTAATCCTGAAAAGAATGGAG-ATTATTATGAGT
* * * * *
145464 ATTCAAGTTTGTCTTATTTAAGAGAC-AACTTTGAATCTGTCAATAATGGTGGAAAGAAAAGCTG
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCT-
* * * * * * * * *
145528 CTCTTGCGACACCAAAGCATCAATGTCTTATATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAA
65 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
*
145593 TCTTGAAAAGAATGGAGACTT-TTATGAG-
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
* ** * * * * * *
145621 AATCAATGCATGTCTCACTGAA-AGTACAAACTTTGATTTTAAT-GAAAATAAG-GCAAAGAAAA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTT-ATCAAAAAT-GGTGGAAAGAAAA
* * * ** * * * *
145683 GATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGGAAAATGTGTTTATAGTGC
62 GCTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGC
* ** ** *
145748 CTAAT-CTCAAAAAGAATAAAGATCCTTACT-AGA
125 CTAATCCT-GAAAAGAATGGAGATTATTA-TGAGT
* * * * * *
145781 ATCCATGTTTGTCTAATTTGAG-GA-ATGAACTTAT-ACTTGA-CAAAAATAGGTGGGAAG-AAA
1 ATTCATGTTTGTCTTATTTAAGAGACA--AACTT-TGATTTTATCAAAAAT-GGTGGAAAGAAAA
* * * * * * *
145841 GCGATTCTTGCGAAACCAAAGCTTGAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGC
62 GC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGC
* *
145906 CTAATCCTAAAAAGAATAGG-GATTAGTATGAGT
125 CTAATCCTGAAAAGAAT-GGAGATTATTATGAGT
* * * * * * * *
145939 ATTCATGTTTGTTTTATTTAAAAGACAAACTTTGATTCTATTAATAACGGTAGAATGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * *
146004 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* * *
146069 TCATGAAAAGATTGGAGACTT-TTACGAG-
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
* ** ** * *
146097 AATCAATGCATGTCTTATTTAA-AGTACAAACTTTGATTTTAAGAAAAATAAG-GCAAAGAAAAG
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAG
* * * ** * * * **
146160 ATTTCCATGCAAAAGAAAACCATAAATATCATTTATCCTAATGAGGAGAATGTGTTTACAGTGCC
63 CTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* * ** *
146225 TAATCAC-GAAATGAATGAAGATCCTTACT-AGA
126 TAATC-CTGAAAAGAATGGAGATTATTA-TGAGT
* * * * * *
146257 ATCCATGTTTGTCTCATTT--GAGGCATGAACTTAGA-ATTA-CAAAAATCGATGGGAAA-AAAA
1 ATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTTATCAAAAAT-GGT-GGAAAGAAAA
* * * * * * *
146317 -CATTTCTTGCGAAACCAAATCATCAATATCTTGTATCCTTATGAGAAGACTATGTTTAT-GTTC
62 GC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGC
* *
146380 CTAATCCTGAAAAGAATGGGGATTAGTATGAGT
125 CTAATCCTGAAAAGAATGGAGATTATTATGAGT
* * * ** *
146413 ATTCATGTTTGTCTTATTTAAGGGATAAACTTTGATTCTATC-ATTATCAGTGGAAAGAAAAGCT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAGCT
* * * ** * * *
146477 TCTCTTGCGACACCAAAGCTTCAATGTCATGTATCCTAACAAAGGGAATGTGTTTCTGGTTCCCA
65 T-TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAA-TGAGGGAATGTGTTTATGGTGCCTA
* * * *
146542 AT-CTTAGGAAGAATGAAGACTT-TTACGAG-
128 ATCCTGA-AAAGAATGGAGA-TTATTATGAGT
* ** * ** **** * * *
146571 AATCAATGCATGACCCATTTAA-AGTACAAACTTTGATTTTAAGGTAAATAAG-GCAAAGAAAGG
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-GGTGGAAAGAAAAG
* * * ** * * * *
146634 ATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGGGTTTATAGTGCC
63 CTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* * * *** ** *
146699 TAATCATGAAATGAATGAAGATCCCTACAAGA
126 TAATCCTGAAAAGAATGGAGATTATTATGAGT
* * * ** * * * * *
146731 ATCCATGTTTGTCTTATCTGAGCA-ATGAAC-TCGTACTTTA-CGAAAATTGGTGGGAAG-CAAG
1 ATTCATGTTTGTCTTATTTAAG-AGACAAACTTTG-ATTTTATC-AAAAATGGTGGAAAGAAAAG
* ** * * * * *
146792 CGTATCTTATGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGGTTATGGTGCC
63 C-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCC
* * * * * *
146857 CAATCCTAAAAAGCATGGGGGTTAGTATGAGT
126 TAATCCTGAAAAGAATGGAGATTATTATGAGT
* * * **
146889 ATTCAAGTTTGTCATATTTAAGAGAC-AACATTGATTCCATCAAAAATGGTGGAAAGAAAAGCTA
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCT-
* * * * * * *
146953 CTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGAACGGAATGTGTTTTTGGT-CTCCA
65 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGC-CTA
* * *
147017 ATCTTGAAAAGAATGGAG-TCTTTTACGAG-
128 ATCCTGAAAAGAATGGAGAT-TATTATGAGT
* ** * * * * * *
147046 AATCAATGCATGTCTCA-TTAAAAGTACAAACTTTGATTTTAAT-GAAAATAAG-GCAATGAAAA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTT-ATCAAAAAT-GGTGGAAAGAAAA
* * * ** * * * *
147108 GATTTCCATG-TACAAGAAAACCATCAATATCATTTATCCTAACGAGGAGAATGTGTTTATAGTG
62 GCTTT-CTTGCGA-AACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTG
** * * * *
147172 CCTAATCGAGAAATGAATGAAGATCATTACT-AGG
124 CCTAATCCTGAAAAGAATGGAGATTATTA-TGAGT
* * * * * * * *
147206 ATCCATGTTAGTCTCATTTGAG-GCACGAACTTAGAATTTA-CAAAAATTGGTGGTAAG-AAAGC
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAGC
* * * * * *
147268 GTTTCTTGCGAAACCAAAGCATCAATATTATGTATCCTTATTAGAAGACTATGTTTATGGTGCCT
64 -TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCCT
* *
147333 AATCCTGAAAAGAATGGGGATTAGTATGAGT
127 AATCCTGAAAAGAATGGAGATTATTATGAGT
* * * * * *
147364 ATTCAAGTTTGCCTTATTGAAGAGACAAACTTTGATTTTATCAATAACGATGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * *
147429 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* * * * *
147494 TCTTGGAAAGAATTGAG-TCTTTTACGAG-
129 TCCTGAAAAGAATGGAGAT-TATTATGAGT
* * * * * *** * *
147522 AATCAATGCTTGCCTCATTTAA-AGTTCAAACTTTGATTTTAAGGAAAGTGAG-GCAAAGAAATA
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATG-GTGGAAAGAAA-A
** ** * ** * * * * *
147585 ATTTTCAGGCAAAAGAAAACCATCAATATCATTTATCCTATTGGGGAGAATGTGTTTATAGTGCC
62 GCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* * ** *
147650 TAATCAC-GAAATGAATGAAGATCCTTACT-AGA
126 TAATC-CTGAAAAGAATGGAGATTATTA-TGAGT
* * * * * *** *
147682 ATCCATGTTTGCCTCATTTGAG-GA-ATGGAC-TT-ATACCAT-AGAAAAGTTGGTGGGAAG-AA
1 ATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTTATCA-AAAA--TGGTGGAAAGAAA
* * * * * *
147741 AGCTTTTCTTTCGAAACCAAAGCATCGACATCATGTATCCTTATGA-GAACACTATGTTTATGGT
61 AGC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGGGA-A-TGTGTTTATGGT
* * * * *
147805 GCCTAAT-CTATAAAAGAAAGTG-GACTAGTATGACT
123 GCCTAATCCT-GAAAAGAATG-GAGATTATTATGAGT
* * * * ** *
147840 ATTTATGTTTGGCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGGGAGAACAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * *
147905 CTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-GTCCCA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTG-CCTA
* * * *
147969 ATCTTGAAAAGAGTGGAGACTT-TTA-CAGG
128 ATCCTGAAAAGAATGGAGA-TTATTATGAGT
* ** * * * ** ** *
147998 AATCAATGCATGTCTCATTTGAAG-TACAAACTTTAATTTTAAGAAAAACAAGT-CAAAGAAAAG
1 ATTC-ATGTTTGTCTTATTT-AAGAGACAAACTTTGATTTTATCAAAAA-TGGTGGAAAGAAAAG
* ** ** * * * * **
148061 ATTTCCAAGC-AAAGGAAAACCATCAATATCATTTATCATAATGA--GAATGTGTTTCTACTGCC
63 CTTT-CTTGCGAAA-CCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCC
* * * * ** *
148123 TAAACATGAAATGAATGAAGATCCTTACTG-GA
126 TAATCCTGAAAAGAATGGAGATTATTA-TGAGT
* * ** * * * *
148155 ATCCATGTTTGTCTCATTGGAG-GCACGAACTTAGAATTTA-CAAAAATTGG-CGAGAAG-AAAG
1 ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TGGTGGA-AAGAAAAG
* * * * *
148216 -TGTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGACTATGTTTATGGTGCC
63 CT-TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCC
*
148280 TAATCCAGAAAAGAATGTG-GATTAGTT-TGAGT
126 TAATCCTGAAAAGAATG-GAGATTA-TTATGAGT
* * * *
148312 ATTCATGCTTGTCTTATTTAAGAGACAAACATTGATATTATCAATAATGGTGGAAAGAAAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * * * *
148377 CTCTTGTGACACCAAAGCATCAATGTCAAGCATCCTAATAAAGGGAATGTGTTCT-TGGTTCCCA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAAT-GAGGGAATGTGTT-TATGGTGCCTA
** * *
148441 A-AATTAGAAAGAATTGAGACTT-TTATGAG-
128 ATCCTGA-AAAGAATGGAGA-TTATTATGAGT
* ** * *** * * *
148470 AATCAATGCATGTCTCATTTAA-AGTACAAACTTTGATTTTAAGGAAAACGAG-GCAAATAAAAG
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATG-GTGGAAAGAAAAG
* * * ** * * * * *
148533 ATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGAAGAATGTGTTTATAGTCCC
63 CTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCC
* ** **
148598 TAAT-CTCGAAAAGAATGAAGATCCTTAAAAG-
126 TAATCCT-GAAAAGAATGGAGATTATTATGAGT
* * * * * *
148629 AATCTATGTTTGTCTAATTTGAG-GA-ATGAA-TTT-ATACTTGA-CAAAAATTGTTGGGAAG-A
1 ATTC-ATGTTTGTCTTATTTAAGAGACA--AACTTTGAT--TTTATCAAAAA-TGGTGGAAAGAA
* * * * * *
148688 AAGCGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACA-ATGTTCATGG
60 AAGC-TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGA-ATGTGTTTATGG
* * * * * *
148752 TGCCTAATCTTGAAAAGAATGGGGTTTAGTGTGAAT
122 TGCCTAATCCTGAAAAGAATGGAGATTATTATGAGT
* * * * * * *
148788 ATTCATTTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAATAACGATGGAAAGACAAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
* * * * * *
148853 CTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAA
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCTAA
* * *
148918 TCTTGAAATGAATGGAGACTT-TTAT-AGG
129 TCCTGAAAAGAATGGAGA-TTATTATGAGT
** ** * *** * *
148946 AACCAATGCAT-TCTCATTTAA-AGTACAAACTTTGATTTTAAGGAAAACGAG-GCAAAGAAAAG
1 ATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATG-GTGGAAAGAAAAG
* * * * * *
149008 ATTTACATGCAGCAGA--AAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTG
63 CTTT-CTTGC-G-AAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTG
* ** *
149071 CCTAAT-C-GCAAAATGAATGAAGATCCTTACT-AGA
124 CCTAATCCTG-AAAA-GAATGGAGATTATTA-TGAGT
* ** * * ** * * *
149105 ATCCATGTTTGTCAAATTTGAGAAATGAACTTAT-ACTTGA-CAAAAATTGGTGGGAAG-AAAG-
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTT-TGATTTTATCAAAAA-TGGTGGAAAGAAAAGC
* * * * *
149166 TGTATCTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCC
64 T-T-TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGCC
* * * *
149231 TAATCCAGAAAAGAAAGTG-GATTAGTATGACT
126 TAATCCTGAAAAGAATG-GAGATTATTATGAGT
* * * ** *
149263 ATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTGTATCAATAATGGTGGGGAGAACAGCTT
1 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
** * * * *
149328 CTCTTATGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGAGAATGTGTTT
66 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTT
149382 TTGATGAGAA
Statistics
Matches: 6542, Mismatches: 2030, Indels: 1131
0.67 0.21 0.12
Matches are distributed among these distances:
152 1 0.00
153 21 0.00
154 113 0.02
155 27 0.00
156 244 0.04
157 878 0.13
158 2055 0.31
159 2881 0.44
160 305 0.05
161 17 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (157 bp):
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTT
TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCCTAATC
CTGAAAAGAATGGAGATTATTATGAGT
Found at i:149515 original size:16 final size:16
Alignment explanation
Indices: 149494--149558 Score: 78
Period size: 16 Copynumber: 4.1 Consensus size: 16
149484 CTAGAGAAGA
149494 TGGACCCAATTTGGAG
1 TGGACCCAATTTGGAG
* *
149510 TGGACCCAAATTAGAG
1 TGGACCCAATTTGGAG
* *
149526 TGGA-CCTATTTGATAG
1 TGGACCCAATTTG-GAG
149542 TGGACCCAATTTGGAG
1 TGGACCCAATTTGGAG
149558 T
1 T
149559 TAGAAGAGCC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
15 5 0.13
16 27 0.69
17 7 0.18
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (16 bp):
TGGACCCAATTTGGAG
Found at i:151047 original size:12 final size:11
Alignment explanation
Indices: 151029--151093 Score: 64
Period size: 12 Copynumber: 5.8 Consensus size: 11
151019 GAGAAAGAAA
151029 AGATAGGAGGG
1 AGATAGGAGGG
151040 ATGATAGGAGGAG
1 A-GATAGGAGG-G
*
151053 AGATAGTA--G
1 AGATAGGAGGG
151062 AGATA-GAGGG
1 AGATAGGAGGG
151072 ATGATAGGAGGAG
1 A-GATAGGAGG-G
151085 AGATAGGAG
1 AGATAGGAG
151094 AGATAATAGA
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
8 1 0.02
9 6 0.13
10 2 0.04
11 5 0.11
12 27 0.60
13 4 0.09
ACGTcount: A:0.40, C:0.00, G:0.46, T:0.14
Consensus pattern (11 bp):
AGATAGGAGGG
Found at i:151076 original size:32 final size:33
Alignment explanation
Indices: 151029--151098 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 33
151019 GAGAAAGAAA
*
151029 AGATAGGAGGGATGATAGGAGGAGAGATAGTAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
151062 AGATA-GAGGGATGATAGGAGGAGAGATAGGAG
1 AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
151094 AGATA
1 AGATA
151099 ATAGAGAGAG
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 31 0.86
33 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.44, T:0.14
Consensus pattern (33 bp):
AGATAGGAGGGATGATAGGAGGAGAGATAGGAG
Found at i:151105 original size:41 final size:42
Alignment explanation
Indices: 151048--151126 Score: 115
Period size: 41 Copynumber: 1.9 Consensus size: 42
151038 GGATGATAGG
* * *
151048 AGGAGAGATAGTAGAGATA-GAGGGATGATAGGAGGAGAGAT
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAT
*
151089 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGGGGAG
1 AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
151127 GAAAGAAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
41 17 0.52
42 16 0.48
ACGTcount: A:0.41, C:0.01, G:0.47, T:0.11
Consensus pattern (42 bp):
AGGAGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAGAT
Found at i:158487 original size:42 final size:42
Alignment explanation
Indices: 158440--158558 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
158430 TTCTTATCTC
*
158440 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
158482 CTCCTCCTATCATCCCTCCTATCACTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
158524 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
158559 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.10, C:0.46, G:0.02, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:163084 original size:159 final size:155
Alignment explanation
Indices: 162518--169034 Score: 2413
Period size: 159 Copynumber: 41.1 Consensus size: 155
162508 TTTGGTTCCC
* * * *
162518 AATCTTGAAAAGAATGGAGACTTTTTACGGGAATCAATGTATGTCTCATTTAAAGTACAAACTTT
1 AATCCTGAAAAGAATGGAGA--TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
* ** * * ** * *
162583 GATTTTAAGGAAAACAAGTCAAAGAAAAG-TTTTCCATGCAAAAGAAAACCATCAATATCATTTA
64 GATTTTAA--AAAATAAGGGAAAGAAAAGCTTTT-CTTGCGAAACCAAAGCATCAATATCATGTA
* * *
162647 TCCTAATGAGGAGAATGTGTTTATAGTGCCT
126 TCCTAATAAAG-GAATGTGTTTATGGTGCCT
** * * * * * * * * *
162678 AATCAC-GAACTGAATGAAGATCCTTACT-AGAATCCACGTTTGTCTTATTTGAGGCACGAACTT
1 AATC-CTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT
* * * * * * *
162741 AGAATTTACAAAAATTATGGG-AA-AAAAG-TGTTTCTTGTGAAACCAGATCATCAATATCCTGT
63 TGATTTTA-AAAAA-TAAGGGAAAGAAAAGCT-TTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
162803 ATCCGT-ATAAGAAGACTATGTTTATGGTGCCT
125 ATCC-TAATAA-AGGAATGTGTTTATGGTGCCT
* ** * * * * *
162835 AATCTTGAAAAGAATGG-GATCAGTATGAGTATTAAAGTTTGTCTTATTTAAGAG-ACAAATTTT
1 AATCCTGAAAAGAATGGAGAT-TTTATGAGAATCAATGTTTGTCTCATTTAA-AGTACAAACTTT
* * ** * * * *
162898 GATTTTATCGAAAACATTGGAAAGAAAAGCCTATCTTGCGACACCAAAGCATCAATGTCATGTAT
64 GATTTTA--AAAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * *
162963 CCTAATAAAGGTAATGTGTTTTTGGTTCCC
127 CCTAATAAAGG-AATGTGTTTATGGTGCCT
* **
162993 AATCTTGAAAAGAATGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * ** * * ** * *
163058 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTCCCATGCAAAAGAAAACCATCAATATCATTTATC
65 ATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* *
163123 CTAA-AAGGGAGAATGTGTTTATAGTGCCT
128 CTAATAA-AG-GAATGTGTTTATGGTGCCT
* * * ** ** * * *
163152 AATCATGAAATGAATGAAGATCCCTAAAAGAATCCATGTTTGTCTCATTT-GAGCA-ATGAACTC
1 AATCCTGAAAAGAATGGAGAT-TTTATGAGAATCAATGTTTGTCTCATTTAAAGTACA--AACT-
* * * ** * * * *
163215 AT-ACTTTACACAAATTGGTGGGAAG-AAAGCGTATCTTGCGAAACCAAAGTATCAATATCATGT
62 TTGATTTTA-AAAAATAAG-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
163278 ATCCTTATGAGAA-GACTATGTTTATGGTGCCT
125 ATCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * *
163310 AATCTTGAAAAGAAT-GAGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-AC-AACT
1 AATCCTGAAAAGAATGGA-GATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACT
* * * * * * *
163371 TTGATTCCATCAATAAT-GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
62 TTGATT--TTAAAAAATAAG-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATG
* *
163435 TATCCTAATGAAAGGAATGTGTTGT-TGGTTCCC
124 TATCCTAAT-AAAGGAATGTGTT-TATGGTGCCT
* * ** *
163468 AATCTTGAAAAGAATGGAGACTTTTATGAGAATCAGTGCATGTCTCATTTAAAATACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* ** * ** * *
163533 ATTTTAAGGAAAATAAGGCG-AAGAAAAGATTTTCACGCAAAAGAAAACCATCAATATCATTTAT
65 ATTTTAA--AAAATAAGG-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * * *
163597 CCGAATGACGAGAATGTGTTTATAGTGCCT
127 CCTAATAAAG-GAATGTGTTTATGGTGCCT
* * * * * * *** *
163627 AATCATGAAAGGAATGAAGATCCTTACT-AGAATCCATGCTTGTCTCATTTGGGGTATGAAA-TT
1 AATCCTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTA-CAAACTT
* * ** *
163690 AGAATTTACAAAAATTGGTGGGAAG-AAAG-TGTTTCTTGCGAAACCAAAGCATCAATATCATGT
63 TGATTTTA-AAAAATAAG-GGAAAGAAAAGCT-TTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
163753 ATCCTTATTAGAA-GACTATGTTTATGGTGCCT
125 ATCC-TAATA-AAGGAATGTGTTTATGGTGCCT
* * * * *
163785 AATCCAGAAAAGGATGTG-GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACT
1 AATCCTGAAAAGAATG-GAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACT
* * * * * * *
163847 TTGATTCTATCAATAAT-GGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATG
62 TTGATT-T-TAAAAAATAAG-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATG
*
163911 TATCCTAATAAAGGGAATGTGTTCT-TGGTTCCT
124 TATCCTAATAAA-GGAATGTGTT-TATGGTGCCT
* * * **
163944 AAT-ATTAGAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT
1 AATCCTGA-AAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
** * * * * ** * *
164008 GATTTTAAGGAAAACGAGGCAAAGAAAAGATTTCCATGC-AAAAGAAAGCCATAAATATCATTTA
64 GATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGTA
* * * *
164072 TCCTAATGAGGAGAATGTGTTTATAGTACCT
126 TCCTAATAAAG-GAATGTGTTTATGGTGCCT
* * * * * * * * * ** *
164103 AATCATGAAATGAAAGAAGATCTTTACT-AGAATCCATGTTTGTCTCGTTTGAGGCATGAACTTA
1 AATCCTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
* * * * *
164167 GAATTTACAAAAATTGATGGG-AA-AAAAGCGTTTCTTGCCAAACC-AAGTCATCAATATCCTGT
64 GATTTTA-AAAAA-T-AAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCATGT
* * * *
164229 ATCCTTATAAGAAGACTATGTTTATGGTGCCT
125 ATCCTAATAA-AGGAATGTGTTTATGGTGCCT
* * * * *
164261 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-AAAAACTT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTT
** * * * * * *
164324 TGATTTT-ATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAATCATTAATGTCATGT
63 TGATTTTAAAAAATAA--G-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
164388 ATCCTAATGAAGGGAAAGTGTTTTTGGAT-CCT
125 ATCCTAAT-AAAGGAATGTGTTTATGG-TGCCT
* * * * **
164420 AAGCTTCG-AAAGAGTGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTT
1 AATCCT-GAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
* * * * ** ** * *
164484 GATTTCAAGGAAAATGAGGCAAAGAAAAGATTTTGATGC-AAAAGAAAACAATCAATATCATTTA
64 GATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGC-ATCAATATCATGTA
* * *
164548 TCCTAATTAGGAGAATGTGTTTATTGTGCCT
126 TCCTAATAAAG-GAATGTGTTTATGGTGCCT
* * ** * * * * * **
164579 AATCAC-GAAATGAATGAAGATCCT-TGCTAGAATCTATGTTTGTCTAATTTGAGGAATGAACTT
1 AATC-CTGAAAAGAATGGAGATTTTATG--AGAATCAATGTTTGTCTCATTTAAAGTACAAACTT
* ** * * * * * *
164642 AT-ACTTTACAAAAATTGGTGGGAAG-AAAGCGTTTCCTGCGAAAGCAAAGCATCAATATTATTT
63 -TGATTTTA-AAAAATAAG-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * *
164705 ATCCTTATGAGAA-GACTATGTTTATGGTACCT
125 ATCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * *
164737 AATCCAGAAAAGAATGTG-GATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACT
1 AATCCTGAAAAGAATG-GAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACT
** ** * * * * *
164799 TTGA-TTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCG-ACCCTAAAGCAACATTATCAT
62 TTGATTTTAAAAAATAA--G-GGAAAGAAAAGCTTTTCTTGCGAAACC-AAAGCATCAATATCAT
* * * *
164862 GTATCTTAATGAAGGGAATGTGTTTTTTGGTTCCT
123 GTATCCTAAT-AAAGGAATGTG-TTTATGGTGCCT
* * ** **
164897 GATCAT-AAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * * * * ** *
164961 ATTTTAAGGAAAAAAAGGCG-AAGAATAGATTTCCATGCAAAAGAAAACCATCAATATCATGTAT
65 ATTTTAA--AAAATAAGG-GAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * * * *
165025 CCTGATGAGGAGAATGTGTTTATCGTGCTT
127 CCTAATAAAG-GAATGTGTTTATGGTGCCT
* * * * * * * * * *
165055 AGTCAC--AAAATGATTGAAGATCCTTACT-AGAATCCATGTTTATCCCATTTGAGGTACGAACT
1 AATC-CTGAAAA-GAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACT
* * * * *
165117 TAGAATTTACAAAAAT-TGTTGGGAA-AAAA-CTGTTTCTTGCGAAACCAAATCATCAATATTCA
62 TTGATTTTA-AAAAATAAG--GGAAAGAAAAGCT-TTTCTTGCGAAACCAAAGCATCAATA-TCA
* * *
165179 -GTATCCTTATGAGAA-GACTATGTTTATGGTGCCT
122 TGTATCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * *
165213 AATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAA-GTTTGTCTTATTTAAGAG-ATAAACTT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTT
** * * * * *
165276 TGATTTT-ATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAATGTCATGT
63 TGATTTTAAAAAATAA-G--GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * *
165340 ATCCTAATGAAGGTAATGTGTTTTTGGTTCCC
125 ATCCTAATAAAGG-AATGTGTTTATGGTGCCT
* * ** * *
165372 AATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGACTCATCTAAAGTACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * * ** * *
165437 -TCTTTAAGGAAAATAAGGCAAAG-AAAG-TAATTCCATGCAAAAGAAAACCATCAATATCATTT
65 AT-TTTAA--AAAATAAGGGAAAGAAAAGCT--TTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
165499 ATCCTTATGAGAA-GACTATGTTTATGGTGCCT
125 ATCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * * *
165531 AATCCTGAAAACAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-ACAAACTT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTT
* ** * * * * * *
165594 TGATTCT-ATCAATAACGTTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTTATGT
63 TGATTTTAAAAAATAA-G--GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * *
165658 ATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
125 ATCCTAAT-AAAGGAATGTGTTTATGGTGCCT
* ** **
165690 AATCCTGAAAAGATTGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * * ** **
165755 ATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC-AAAAGAAAGCCAAAAATATCACT-TA
65 ATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAG-CATCAATATCA-TGTA
* * *
165818 TCCTAATAAGGAGAATGTGTTTATAGTACCT
126 TCCTAATAAAG-GAATGTGTTTATGGTGCCT
* * * * * * * * * * *
165849 AATCATGAAATGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCGTTTGAGGCACGAACATT
1 AATCCTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
* * * * * * *
165913 GAATTTACAAAAATTGATGGG-AA-AAAAGCGTTTCTTGCCAAACCAAATCATCAATATCCTATA
64 GATTTTA-AAAAA-T-AAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* * *
165976 TCCTTATGAGAA-GACTATGTTTATGGTGCCT
126 TCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * * *
166007 AATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAG-AAAAACTT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTT
** * * * * *
166070 TGATTTT-ATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAATCATCAATGTCATGT
63 TGATTTTAAAAAATAA--G-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * *
166134 ATCCTAATGATGGAAAAGTGTTTTTGGAT-CCT
125 ATCCTAATAAAGG-AATGTGTTTATGG-TGCCT
** * * * **
166166 AATATTGGAAAA-AGTGGAGACTTTTACGGGAATCAATGCATGTCTCATTTAAAGTACAAACTTT
1 AATCCT-GAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
* * * * * * ** * *
166230 AATTTTAAGGAAAATGAGGCAAAGAAAAG-ATTTCGATGCAAAAGAAAACCATCAATATCATTTA
64 GATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTC-TTGCGAAACCAAAGCATCAATATCATGTA
** *
166294 TCCTAAT-TGGGAAAATGTGTTTATTGTGCCT
126 TCCTAATAAAGG--AATGTGTTTATGGTGCCT
* * * * * * * * * **
166325 AATCAC-GAAATGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTAACTTGAGGAATGAACTT
1 AATC-CTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT
* ** * * * *
166388 AT-ACTTTACAAAAATTGGTGGGAGGAAAGAG-TTTCCCAT--GAAACCAAAGCATCAATATCAT
63 -TGATTTTA-AAAAATAAG-GGAAAGAAA-AGCTTT-TCTTGCGAAACCAAAGCATCAATATCAT
* * * *
166449 TTATCCTTATTACAA-GACTATGTTTATGGTGCCT
123 GTATCC-TAATA-AAGGAATGTGTTTATGGTGCCT
* * *
166483 AATCTTGAAAAGAATGTG-GATTAGTATGAGTATTC-ATGTTTGTCTCATTTAAGAG-ACAAACT
1 AATCCTGAAAAGAATG-GAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACT
* * * * * * *
166545 TTGATTCCATCAATAA-CAGTGGAAAGACAAA-CTTCTCTTGCGACACCAAAGCAAT-ATTATCA
62 TTGATT--TTAAAAAATAAG-GGAAAGA-AAAGCTTTTCTTGCGAAACCAAAGC-ATCAATATCA
* * * * *
166607 TGTATCTTAATGAAGGGAATGTGTTTTTTGGTTCCC
122 TGTATCCTAAT-AAAGGAATGTG-TTTATGGTGCCT
* ** ** *
166643 AATCAT-AAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTAAAAGTACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * ** * * * * ** *
166707 AATTTAAGGGAAAAAAAATCG-AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTA
65 -ATTTTA---AAAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* * * *
166771 TCCTGATGAGGAGAATGTGTTTATCGTGCCT
126 TCCTAATAAAG-GAATGTGTTTATGGTGCCT
* * * * * * * * * *
166802 AATCAC-GAAATGAATGAAGATCCTTACT-AGAATCCATGTTAGTGTCATTTGAGGCACGAACTT
1 AATC-CTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT
* * * * * *
166865 AGAATTTACAAAAAT-TGTTGGCAAAG--AACCGTTTCTTGCGAAACCAAATCATCAATATTCA-
63 TGATTTTA-AAAAATAAG--GG-AAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA-TCAT
** * *
166926 GTATCCTTACGAGAA-GACTATGTTTATGGTGCCT
123 GTATCC-TAATA-AAGGAATGTGTTTATGGTGCCT
* * * * * *
166960 AATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAA-GTTTGTCTTATTTAAGAG-ATAAACTT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTT
** * * * * **
167023 TGATTTT-ATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCATGT
63 TGATTTTAAAAAATAA-G--GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * * * *
167087 ATCCTAATGAAGGGAATATATTTCTGGTTCCC
125 ATCCTAAT-AAAGGAATGTGTTTATGGTGCCT
* * * ** * * *
167119 AATCTTGGAAAGAATGGGGACTTTTATGAGAATCAATGCATGACTCATCTAAAGTACAAAGTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * * * * ** * * *
167184 ATTTTAAGGAAAATAAGGCAAAGAAAGGATTTCCCTGCAAAAGAAAACCATCAGTATCATTTATC
65 ATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * *
167249 CTTATGAGAA-GACTATGTTTATGGTGCCT
128 CTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * * * * *
167278 AATCCTGAAAACAAT-GAGGATTAGTATGAGTAGTC-ATGTTTGCCTTA-TTAAAGAGATAAACT
1 AATCCTGAAAAGAATGGA-GATT-TTATGAG-AATCAATGTTTGTCTCATTTAAAG-TACAAACT
* ** * * * * *
167340 TTGATTCTATCAAAAA-CGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCGATGTCATG
62 TTGATT-T-TAAAAAATAAG-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATG
* * *
167404 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
124 TATCCTAAT-AAAGGAATGTGTTTATGGTGCCT
* * * ** * *
167437 AATCCTGAAAAAAATTGGAGACTATTACGAGAATCAATGCATGCCACATTTAAAGTACAAACTTT
1 AATCCTGAAAAGAA-TGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
* * * * * * ** *
167502 GATTTTAAGGAAAATTAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTAT
64 GATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTAT
* * * *
167567 CCTGATGAGGAGAATGTGTTTATCGTGCCT
127 CCTAATAAAG-GAATGTGTTTATGGTGCCT
* * * * * * * * *
167597 AATCACAGAATA-AATGAAGATCCTTACT-AAAATCCATGTTTGTCTCATTTGAGGTACGAACTT
1 AATC-CTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT
* * * * * *
167660 AGAATTTACAAAAATTTATGGG-AA-AAAACCGTTTCTTGCGAAACCAAATCATCAATATTCA-G
63 TGATTTTA-AAAAA--TAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA-TCATG
* * *
167722 TATCCTTATGAGAA-GACTATGTTTATGGTGCCT
124 TATCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * * *
167755 AATCCTGAAAA-AATGGGGATTAGTATGAGTATTCAA-GTTTGTCTTATTTAAGAG-ATAAACTT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTT
** * * * * **
167817 TGATTTT-ATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCATGT
63 TGATTTTAAAAAATAA-G--GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * * *
167881 ATCCTAATGAAGGGAATGTATTTCTGGTTCCC
125 ATCCTAAT-AAAGGAATGTGTTTATGGTGCCT
* * * * * ** ** * *
167913 AATCTTGGAAAGAATGGGGACTTTTACGAAAATCAATGCATGAGTCATCTAAAGTACAAACTTTC
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * * * ** * * *
167978 ATTTTAAGGAAAATAAGGCAAAGAAAGGATTTTCATGCAAAAGAAAACCATCAGTATCATTTATC
65 ATTTTAA--AAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * *
168043 CTTATGAGAA-GACTATGTTTATGGTACCT
128 CTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * * * *
168072 AATCCTGAAAACAATGGGGATTAGTATGAGTAGTC-ATGTTTGCCTTA-TTAAGGAG-ACAAACT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA--AGTACAAACT
* ** * * * * * *
168134 TTGATTCTATCAAAAA-CGGTGGAAAGACAAGCTTCTCTTGCGACACTAAAGCATCGATGTCATG
62 TTGATT-T-TAAAAAATAAG-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATG
* * *
168198 TATCCTAATGAAAGGAATGTGTTTTTGGTTCCC
124 TATCCTAAT-AAAGGAATGTGTTTATGGTGCCT
* * ** * *
168231 AATCCTGAAAAGATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTAAAGTACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * * ** *
168296 ATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATGTATC
65 ATTTT-A-AAAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * * *
168361 TTGATGAGGAGAATGTGTTTATCGTGCCT
128 CTAATAAAG-GAATGTGTTTATGGTGCCT
* * ** * * * * * * *
168390 AATCACAG-AATGAATAAAGATCCTTACT-AGAATCCATCTTTGTCTCATTTGAGGTACGAACAT
1 AATC-CTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTT
* * ** * * * * *
168453 AGAATTTACAAAAATTTTTGGG-AA-AAAACCGTTTCTTGCGAAACGAAATCATCAATATTCA-A
63 TGATTTTA-AAAAA--TAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA-TCATG
* * *
168515 TATCCTTATGAGAA-GACTATGTTTATGGTGCCT
124 TATCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
* * * * * * *
168548 AATCCTGAAAAAAAGGGGGATTAGTCTGAGTATTCAA-GTTTGTCTTATTTAAGAG-ACAAACTT
1 AATCCTGAAAAGAATGGAGATT-TTATGAG-AATCAATGTTTGTCTCATTTAA-AGTACAAACTT
* * * * * * *
168611 TGATTCTATCAATAAT-GGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGT
63 TGATT-T-TAAAAAATAAG-GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGT
* * * *
168675 ATCCTAATGAAAGGAATGCGTTTTTGGTTCCC
125 ATCCTAAT-AAAGGAATGTGTTTATGGTGCCT
* * ** *
168707 AATCCTGAAAAGATTGGAGACTTTTACGAGAATCAATGCATGTCTTATTTAAAGTACAAACTTTG
1 AATCCTGAAAAGAATGGAGA-TTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTG
* * * * * * ** *
168772 ATTTTCAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAGAAGA--AAGGCAAAAATATCATTTA
65 ATTTT-A-AAAAATAAGGGAAAGAAAAGCTTTTCTTGC-GAA-ACCAAAGCATCAATATCATGTA
* * * *
168835 TCCTAATGAGGAGAATGTGTTTATAGTACCT
126 TCCTAATAAAG-GAATGTGTTTATGGTGCCT
* * * * * * * * * *
168866 AATCATGAAATGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
1 AATCCTGAAAAGAATGGAGAT-TTTA-TGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTT
* * * * * * *
168930 AAATTTACAAAAAT-TGTTGGGAA-AAAACCGTTTCTTGCGAAACCAAATCATCAATATTCA-GT
64 GATTTTA-AAAAATAAG--GGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATA-TCATGT
* * * * *
168992 ATCCTTATGAGAA-GACTATGTTTGTGGGGCCT
125 ATCCTAAT-A-AAGGAATGTGTTTATGGTGCCT
169024 AATCCTGAAAA
1 AATCCTGAAAA
169035 AAAGTGGGAT
Statistics
Matches: 4577, Mismatches: 1372, Indels: 818
0.68 0.20 0.12
Matches are distributed among these distances:
153 2 0.00
154 3 0.00
155 6 0.00
156 70 0.02
157 199 0.04
158 1413 0.31
159 2456 0.54
160 363 0.08
161 34 0.01
162 31 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (155 bp):
AATCCTGAAAAGAATGGAGATTTTATGAGAATCAATGTTTGTCTCATTTAAAGTACAAACTTTGA
TTTTAAAAAATAAGGGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTA
ATAAAGGAATGTGTTTATGGTGCCT
Found at i:164073 original size:476 final size:475
Alignment explanation
Indices: 162505--169064 Score: 4565
Period size: 476 Copynumber: 13.8 Consensus size: 475
162495 ATTGTCATCA
* *
162505 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTTACGGGAATCAATGTATGTCTCATTTA
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGAC-TTTTACGAGAATCAATGCATGTCTCATTTA
* * *
162570 AAGTACAAACTTTGATTTTAAGGAAAACAAGTCAAAGAAAAGTTTTCCATGCAAAAGAAAACCAT
65 AAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCAT
* *
162635 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAACTGAATGAAGATC
130 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
* * * * *
162700 CTTACTAGAATCCACGTTTGTCTTATTTGAGGCACGAACTTAGAATTTACAAAAATT-ATGGGAA
195 CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAA
* * * * * * *
162764 AAAAGTGTTTCTTGTGAAACCAGATCATCAATATCCTGTATCCGTATAAGAAGACTATGTTTATG
260 AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
* * * *
162829 GTGCCTAATCTTGAAAAGAATGGGATCAGTATGAGTATTAAAGTTTGTCTTATTTAAGAGACAAA
325 GTGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* * ** * *
162894 TTTTGATTTTATCGAA-AACATTGGAAAGAAAAGCCTATCTTGCGACACCAAAGCATCAATGTCA
390 CTTTGATTCTATC-AATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
*
162958 TGTATCCTAATAAAGGTAATGT
454 TGTATCCTAATAAAGGGAATGT
*
162980 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAA
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAA
*
163045 AGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTCCCATGCAAAAGAAAACCATC
66 AGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATC
*
163110 AATATCATTTATCCTAA-AAGGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
131 AATATCATTTATCCTAATGA-GGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
* ** * * * * *
163174 CCTAAAAGAATCCATGTTTGTCTCATTTGAGCAATGAACTCATACTTTACACAAATTGGTGGGAA
195 CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAA
* * *
163239 GAAAGCGTATCTTGCGAAACCAAAGTATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
260 AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
*
163304 GTGCCTAATCTTGAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC-A
325 GTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* *
163368 ACTTTGATTCCATCAATAATGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
389 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCA
163433 TGTATCCTAATGAAA-GGAATGT
454 TGTATCCTAAT-AAAGGGAATGT
* * *
163455 GTTGTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTATGAGAATCAGTGCATGTCTCATTTAA
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAA
* * * *
163520 AATACAAACTTTGATTTTAAGGAAAATAAGGCGAAGAAAAGATTTTCACGCAAAAGAAAACCATC
66 AGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATC
* * *
163585 AATATCATTTATCCGAATGACGAGAATGTGTTTATAGTGCCTAATCATGAAAGGAATGAAGATCC
131 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCC
* * * * *
163650 TTACTAGAATCCATGCTTGTCTCATTTGGGGTATGAAATTAGAATTTACAAAAATTGGTGGGAAG
196 TTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAAA
* *
163715 AAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGACTATGTTTATGG
261 AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGG
* *
163780 TGCCTAATCCAGAAAAGGATGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
326 TGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAA
* *
163845 CTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCAT
390 CTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCAT
163910 GTATCCTAATAAAGGGAATGT
455 GTATCCTAATAAAGGGAATGT
* * *
163931 GTTCTTGGTTCCTAATATT-AGAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
1 GTTTTTGGTTCCCAATCTTGA-AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
** *
163995 AAGTACAAACTTTGATTTTAAGGAAAACGAGGCAAAGAAAAGATTTCCATGCAAAAGAAAGCCAT
65 AAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCAT
* * *
164060 AAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATGAAATGAAAGAAGATC
130 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
* * * *
164125 TTTACTAGAATCCATGTTTGTCTCGTTTGAGGCATGAACTTAGAATTTACAAAAATTGATGGGAA
195 CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAA
* * *
164190 AAAAGCGTTTCTTGCCAAACC-AAGTCATCAATATCCTGTATCCTTATAAGAAGACTATGTTTAT
260 AAAAGCGTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCCTTATGAGAAGACTATGTTTAT
*
164254 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAA
324 GGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
164319 AACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAATCATTAATGTC
388 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
* *
164384 ATGTATCCTAATGAAGGGAAAGT
453 ATGTATCCTAATAAAGGGAATGT
* * * *
164407 GTTTTTGGATCCTAAGCTTCG-AAAGAGTGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
1 GTTTTTGGTTCCCAATCTT-GAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
* * ** *
164471 AAGTACAAACTTTGATTTCAAGGAAAATGAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACAAT
65 AAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCAT
* * *
164536 CAATATCATTTATCCTAATTAGGAGAATGTGTTTATTGTGCCTAATCACGAAATGAATGAAGATC
130 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
* * * * *
164601 CTTGCTAGAATCTATGTTTGTCTAATTTGAGGAATGAACTTATACTTTACAAAAATTGGTGGGAA
195 CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAA
* * * * *
164666 GAAAGCGTTTCCTGCGAAAGCAAAGCATCAATATTATTTATCCTTATGAGAAGACTATGTTTATG
260 AAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATG
* *
164731 GTACCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
325 GTGCCTAATCCTGAAAAGAATG-GGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * *
164796 ACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGAC-CCTAAAGCAACATTATC
389 ACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACC-AAAGCATCAATGTC
* *
164860 ATGTATCTTAATGAAGGGAATGT
453 ATGTATCCTAATAAAGGGAATGT
** * *
164883 GTTTTTTGGTTCCTGATCAT-AAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTTA
1 G-TTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
* * *
164947 AAGTACAAACTTTGATTTTAAGGAAAAAAAGGCGAAGAATAGATTTCCATGCAAAAGAAAACCAT
65 AAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCAT
* * * * * ** *
165012 CAATATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCTTAGTCACAAAATGATTGAAGATC
130 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
* * * * *
165077 CTTACTAGAATCCATGTTTATCCCATTTGAGGTACGAACTTAGAATTTACAAAAATTGTTGGGAA
195 CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAA
*
165142 AAAA-CTGTTTCTTGCGAAACCAAATCATCAATATTCA-GTATCCTTATGAGAAGACTATGTTTA
260 AAAAGC-GTTTCTTGCGAAACCAAAGCATCAATA-TCATGTATCCTTATGAGAAGACTATGTTTA
* *
165205 TGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAT
323 TGGTGCCTAATCCTGAAAAGAATGG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAC
* * * *
165270 AAACTTTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAATGT
387 AAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGT
* *
165335 CATGTATCCTAATGAAGGTAATGT
452 CATGTATCCTAATAAAGGGAATGT
* *
165359 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGACTCATCTAA
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAA
*
165424 AGTACAAACTTTG-TCTTTAAGGAAAATAAGGCAAAG-AAAGTAATTCCATGCAAAAGAAAACCA
66 AGTACAAACTTTGAT-TTTAAGGAAAATAAGGCAAAGAAAAG-ATTTCCATGCAAAAGAAAACCA
* * * * * * ** **
165487 TCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGGAT
129 TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGAT
*** * * * * * * *
165552 TAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTG-ATTCTATCAATAA--CG
194 CCTTACT-AGAATCCATGTTTGTCTCATTTGAG-GA-ATGAACTTAGAATT-TA-CAAAAATTGG
* * * * * * *
165611 TTGGAAAGACAAGC-TTCTCTTGTGACACCAAAGCATCAATGTTATGTATCCTAATGA-AAGGAA
254 TGGGAAA-A-AAGCGTT-TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA-GAC
* * * * * * ** * ** *
165674 TGTGTTTTTGGTTCCCAATCCTGAAAAGATTGGAGACTT-TTACAAG-AATCAATGCATGTCTCA
315 TATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GA-TTAGTATGAGTATTC-ATGTTTGTCTTA
* ** * * * *
165737 TTTAA-AGTACAAACTTTGATTTTAAGGAAAATAA--G-GCAAAGAAAAGATT-TCCATGC-AAA
377 TTTAAGAG-ACAAACTTTGATTCT-A--TCAATAACGGTGGAAAGAAAAGCTTCT-CTTGCGACA
** ** *
165796 AGAAAGCCAAAAATATCACT-TATCCTAAT-AAGGAGAATGT
437 CCAAAG-CATCAATGTCA-TGTATCCTAATAAAGG-GAATGT
* * * * * * * * * * ** * *
165836 GTTTATAGTACCTAATCATGAAATGAATGAAGA-TCCTTACTAGAATCCATGTTTGTCTCGTTTG
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTTA
* * * * * * * * * * **
165900 AGGCACGAACATTGAATTTACA--AAAATTGATGG-GAA-AAAAGCGTTT-CTTGCCAAACCAAA
65 AAGTACAAACTTTGATTTTA-AGGAAAA-T-AAGGCAAAGAAAAG-ATTTCCATGCAAAAGAAAA
* * * * * * * * * * **
165960 TCATCAATATCCTATATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
126 CCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAA
*** * * * * * * * ** *
166025 GATTAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAGAA-AAACTTTGATTTTATCATTAA-CG
191 GATCCTTACT-AGAATCCATGTTTGTCTCATTTGAG-GAATGAACTTAGAATTTA-CAAAAATTG
* * * * *
166087 GTGGAAAGAAAAGC-TTCTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGATGGAA-A
253 GTGGGAA-AAAAGCGTT-TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGA--GAAGA
* ** * * * * * **
166150 --AGTGTTTTTGGAT-CCTAATATTGGAAAA-AGTGGAGACTT-TTACG-GGAATCAATGCATGT
314 CTA-TGTTTATGG-TGCCTAATCCT-GAAAAGAATGG-GA-TTAGTATGAGTATTC-ATGTTTGT
* * * ** * * * * *
166209 CTCATTTAA-AGTACAAACTTTAATTTTAAGGAA-AATGAG-GCAAAGAAAAGATT-TCGATGCA
373 CTTATTTAAGAG-ACAAACTTTGATTCT-ATCAATAACG-GTGGAAAGAAAAGCTTCTC-TTGCG
* ** * * * *
166270 AAAGAAAACCATCAATATCATTTATCCTAAT--TGGGAAAATGT
434 ACACCAAAGCATCAATGTCATGTATCCTAATAAAGGG--AATGT
* * ** * * * * * ** * *
166312 GTTTATT-GTGCCTAATCACGAAATGAATGAAGA-TCCTTACTAGAATCCATGTTTGTCTAACTT
1 GTTT-TTGGTTCCCAATCTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCATGTCTCATTT
* * * ** * * *** * **
166375 GAGGAATGAACTTAT-ACTTTACA--AAAAT-TGGTGGGAGGAAAGAGTTTCCCATG--AAACCA
64 AAAGTACAAACTT-TGATTTTA-AGGAAAATAAGG-CAAAGAAAAGA-TTT-CCATGCAAAAGAA
* * * ** * * * * *
166434 AAGCATCAATATCATTTATCCTTATTACAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATG
124 AACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATG
** *** * * * * * *
166499 TGGATTAGTA-TGAGTATTCATGTTTGTCTCATTTAAGAGACA--AACTTTG-ATTCCATCAATA
189 AAGATCCTTACT-AGAATCCATGTTTGTCTCATTTGAG-GA-ATGAACTTAGAATT-TA-CAAAA
** * * *
166560 A-CAGT-GGAAAGACAAAC-TTCTCTTGCGACACCAAAGCAAT-ATTATCATGTAT-CTTAATGA
249 ATTGGTGGGAAA-A-AAGCGTT-TCTTGCGAAACCAAAGC-ATCAATATCATGTATCCTT-ATGA
* * * * * * * * ** * *
166620 -AGGGAATGTGTTTTTTGGTTCCCAATCAT-AAAAGAATGGAGACTT-TTACAAG-AATCAATGC
309 GA-AGACTATG-TTTATGGTGCCTAATCCTGAAAAGAATGG-GA-TTAGTATGAGTATTC-ATGT
* * * ** * *** * *
166681 ATGTCTCA-TTAAAAGTACAAACTTTGAATT-TAAGGGAAAAAAAATCG-AAGAAAAGATT-TCC
369 TTGTCTTATTTAAGAG-ACAAACTTTG-ATTCT-A-TCAATAACGGTGGAAAGAAAAGCTTCT-C
* * * ** * * * *
166742 ATGCAAAAGAAAACCATCAATATCATGTATCCTGAT-GAGGAGAATGT
429 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGG-GAATGT
* * * * ** * * * * * * *
166789 GTTTATCGTGCCTAATCACGAAATGAATGAAGA-TCCTTACTAGAATCCATG-TTAGTGTCATTT
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACT-TTTACGAGAATCAATGCAT-GTCTCATTT
* * * * * * ** ** * * **
166852 GAGGCACGAACTTAGAATTTACA--AAAATTGTTGGCAAAGAACCG-TTT-CTTGCGAAACCAAA
64 AAAGTACAAACTTTGATTTTA-AGGAAAA-T-AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * * * * * * * ** *
166913 TCATCAATATTCA-GTATCCTTACGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGG
126 CCATCAATA-TCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGA
* *** * * * * * * * * * *
166977 GGATTAGTA-TGAGTATTCAAGTTTGTCTTATTT-AAGAGATAAACTTTGATTTTATCAATAA-C
190 AGATCCTTACT-AGAATCCATGTTTGTCTCATTTGAGGA-ATGAACTTAGAATTTA-CAAAAATT
* * * * * ** * *
167039 GTTGGAAAGAAAAGC-TTCTCTTGTGACACCAAAACATCAACGTCATGTATCCTAATGA-AGGGA
252 GGTGGGAA-AAAAGCGTT-TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGA-AGA
* * * * * * * * * ** * *
167102 ATATATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTT-TTATGAG-AATCAATGCATGACTC
314 CTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGA-TTAGTATGAGTATTC-ATGTTTGTCTT
* * * ** * * * * * *
167165 ATCTAA-AGTACAAAGTTTGATTTTAAGGAAAATAA--G-GCAAAGAAAGGATT-TCCCTGCAAA
376 ATTTAAGAG-ACAAACTTTGATTCT-A--TCAATAACGGTGGAAAGAAAAGCTTCT-CTTGCGAC
** * * * * * * *
167225 AGAAAACCATCAGTATCATTTATCCTTATGAGAA--GACTAT
436 ACCAAAGCATCAATGTCATGTATCCTAAT-A-AAGGGAATGT
* * * * * * * * ** * *
167265 GTTTATGGTGCCTAATCCTGAAAACAAT-GAGGA-TTAGTATGAGTAGTC-ATGTTTGCCTTA-T
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGA-GACTT-TTACGAG-AATCAATGCATGTCTCATT
* * * ** * * * * * * * **
167326 TAAAGAGATAAACTTTGATTCT-ATCAAAA-ACGGTGGAAAGACAAG-CTTCTCTTGCGACACCA
63 TAAAG-TACAAACTTTGATTTTAAGGAAAATA-AG-GCAAAGAAAAGATTTC-CATGCAAAAGAA
* * * * * * * * * * **
167388 AAGCATCGATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCCTGAAAAAAAT
124 AACCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCATGAAATGAA-
* * * * ** * * * * * ** * *
167452 TGGAGA-CTATTACGAGAATCAATGCATGCCACATTTAAAGTACAAACTTTGATTTTA-AGGAAA
187 TGAAGATC-CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACA--AAA
* ** * * * ** * * *
167515 ATTAG-GCAAAGAAAAG-ATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGGA
249 ATTGGTGGGAA-AAAAGCGTTT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAA
* * * * * * *** ** *
167578 GAATGTGTTTATCGTGCCTAATCACAGAATA-AATGAAGATCCTTACT-AAAATCCATGTTTGTC
312 GACTATGTTTATGGTGCCTAATC-CTGAAAAGAATG-GGATTAGTA-TGAGTATTCATGTTTGTC
* * * * * *** * *
167641 TCATTTGAG-GTACGAACTTAGAATT-TA-CAAAAATTTATGGGAA-AAAACCGTT-TCTTGCGA
374 TTATTTAAGAG-ACAAACTTTG-ATTCTATCAATAA-CGGTGGAAAGAAAAGC-TTCTCTTGCGA
* * * * * *
167701 AACCAAATCATCAATATTCA-GTATCCTTATGAGAA--GACTAT
435 CACCAAAGCATCAAT-GTCATGTATCCTAAT-A-AAGGGAATGT
* * * * * * * * ** *
167742 GTTTATGGTGCCTAATCCTGAAAA-AATGGGGA-TTAGTATGAGTATTCAA-GTTTGTCTTATTT
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTT
* ** * * * * * **
167804 AAGAG-ATAAACTTTGATTTT-A--TCAATAACGTTGGAAAGAAAAG-CTTCTCTTGTGACACCA
64 AA-AGTACAAACTTTGATTTTAAGGAAAATAA-G--GCAAAGAAAAGATTTC-CATG-CAAAAGA
** * * * * * * *
167864 AAA-CATCAACGTCATGTATCCTAATGAAGG-GAATGTATTTCTGGTTCCCAATCTTGGAAA-GA
123 AAACCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCAT-GAAATGA
** * * * * ** ** * * * * ** ** *
167926 ATGGGGA-CTTTTACGAAAATCAATGCATGAGTCATCTAAAGTACAAACTTTCATTTTA-AGGAA
186 ATGAAGATC-CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACA--AA
** * * * ** * * *
167989 AA-T-AAGGCAAAGAAAG-GATTTTCATGCAAAAGAAAACCATCAGTATCATTTATCCTTATGAG
248 AATTGGTGGGAAA-AAAGCG--TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAG
* * * *
168051 AAGACTATGTTTATGGTACCTAATCCTGAAAACAATGGGGATTAGTATGAGTAGTCATGTTTGCC
310 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGAGTATTCATGTTTGTC
* *
168116 TTA-TTAAGGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGACAAGCTTCTCTTGCGACAC
374 TTATTTAA-GAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACAC
* *
168180 TAAAGCATCGATGTCATGTATCCTAATGAAA-GGAATGT
438 CAAAGCATCAATGTCATGTATCCTAAT-AAAGGGAATGT
* * * *
168218 GTTTTTGGTTCCCAATCCTGAAAAGATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTAA
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAA
* *
168283 AGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
66 AGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATC
* * * * * *
168348 AATATCATGTATCTTGATGAGGAGAATGTGTTTATCGTGCCTAATCA-CAGAATGAATAAAGATC
131 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGA-AATGAATGAAGATC
* * * * **
168412 CTTACTAGAATCCATCTTTGTCTCATTTGAGGTACGAACATAGAATTTACAAAAATTTTTGGGAA
195 CTTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAA
* * * *
168477 AAAACCGTTTCTTGCGAAACGAAATCATCAATATTCA-ATATCCTTATGAGAAGACTATGTTTAT
260 AAAAGCGTTTCTTGCGAAACCAAAGCATCAATA-TCATGTATCCTTATGAGAAGACTATGTTTAT
* * * *
168541 GGTGCCTAATCCTGAAAAAAAGGGGGATTAGTCTGAGTATTCAAGTTTGTCTTATTTAAGAGACA
324 GGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
* *
168606 AACTTTGATTCTATCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
388 AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
*
168671 ATGTATCCTAATGAAA-GGAATGC
453 ATGTATCCTAAT-AAAGGGAATGT
* * *
168694 GTTTTTGGTTCCCAATCCTGAAAAGATTGGAGACTTTTACGAGAATCAATGCATGTCTTATTTAA
1 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAA
* * ** **
168759 AGTACAAACTTTGATTTTCAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAGAAGAAAGGCAAA
66 AGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATC
*
168824 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATGAAATGAATGAAGATCC
131 AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCC
* * * *
168889 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAAATTTACAAAAATTGTTGGGAAA
196 TTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAAA
* * *
168954 AAACCGTTTCTTGCGAAACCAAATCATCAATATTCA-GTATCCTTATGAGAAGACTATGTTTGTG
261 AAAGCGTTTCTTGCGAAACCAAAGCATCAATA-TCATGTATCCTTATGAGAAGACTATGTTTATG
* * * *
169018 GGGCCTAATCCTGAAAAAAAGTGGGATTAGTATGATTATTCAAGTTT
325 GTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGAGTATTCATGTTT
169065 ATTGTATTTG
Statistics
Matches: 5122, Mismatches: 754, Indels: 417
0.81 0.12 0.07
Matches are distributed among these distances:
473 8 0.00
474 227 0.04
475 790 0.15
476 2984 0.58
477 885 0.17
478 193 0.04
479 22 0.00
480 13 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAA
AGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATC
AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCC
TTACTAGAATCCATGTTTGTCTCATTTGAGGAATGAACTTAGAATTTACAAAAATTGGTGGGAAA
AAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGG
TGCCTAATCCTGAAAAGAATGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAAC
TTTGATTCTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATG
TATCCTAATAAAGGGAATGT
Found at i:165743 original size:794 final size:794
Alignment explanation
Indices: 164674--166328 Score: 2522
Period size: 794 Copynumber: 2.1 Consensus size: 794
164664 AAGAAAGCGT
* * * * *
164674 TTCC-TGCGAAAGCAAAGCATCAATATTATTTATCCTTATGAGAAGACTATGTTTATGGTACCTA
1 TTCCATGCAAAAGAAAACCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
* *
164738 ATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
66 ATCCAGAAAACAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
164803 TTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACCCTAAAGCAACATTATCATGTATCT
131 TTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACCCTAAAGCAACAATATCATGTATCC
* **
164868 TAATGAAGGGAATGTGTTTTTTGGTTCCTGATCATAAAAGAATGGAGACTTTTACAAGAATCAAT
196 TAATGAAAGGAATGTGTTTTTTGGTTCCCAATCATAAAAGAATGGAGACTTTTACAAGAATCAAT
* *
164933 GCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAAAAGGCGAAGAATAGATTTCCATG
261 GCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAAAAGGCAAAGAAAAGATTTCCATG
** * * * * * *
164998 CAAAAGAAAACCATCAATATCA-TGTATCCTGATGAGGAGAATGTGTTTATCGTGCTTAGTCACA
326 CAAAAGAAAACCAAAAATATCACT-TATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCACA
* *
165062 AAATGATTGAAGATCCTTACTAGAATCCATGTTTATCCCATTTGAGGTACGAAC-TTAGAATTTA
390 AAATGAATGAAGATCCTTACTAGAATCCATGTTTATCCCATTTGAGGCACGAACATT-GAATTTA
* * *
165126 CAAAAATTGTTGGGAAAAAA-CTGTTTCTTGCGAAACCAAATCATCAATATTC-AGTATCCTTAT
454 CAAAAATTGATGGGAAAAAAGC-GTTTCTTGCCAAACCAAATCATCAATATCCTA-TATCCTTAT
165189 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAAGTTT
517 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAAGTTT
* * *
165254 GTCTTATTTAAGAGATAAACTTTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGAC
582 GTCTTATTTAAGAGAAAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGAC
* * * *
165319 ACCAAAACATCAATGTCATGTATCCTAATGAAGGTAATGTGTTTTTGGTTCCCAATCTT-GAAAA
647 ACCAAAACATCAATGTCATGTATCCTAATGAAGGAAAAGTGTTTTTGGATCCCAATATTGGAAAA
*
165383 GAATGGAGACTTTTACGAGAATCAATGCATGACTCATCTAAAGTACAAACTTT-GTCTTTAAGGA
712 -AATGGAGACTTTTACGAGAATCAATGCATGACTCATCTAAAGTACAAACTTTAAT-TTTAAGGA
165447 AAATAAGGCAAAG-AAAGTAA
775 AAATAAGGCAAAGAAAAG-AA
165467 TTCCATGCAAAAGAAAACCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
1 TTCCATGCAAAAGAAAACCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
*
165532 ATCCTGAAAACAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
66 ATCCAGAAAACAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * *
165597 TTCTATCAATAACGTTGGAAAGACAAGCTTCTCTTGTGACACC-AAAGCATCAATGTTATGTATC
131 TTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGAC-CCTAAAGCAACAATATCATGTATC
* *
165661 CTAATGAAAGGAATGTG-TTTTTGGTTCCCAATCCTGAAAAGATTGGAGACTTTTACAAGAATCA
195 CTAATGAAAGGAATGTGTTTTTTGGTTCCCAATCAT-AAAAGAATGGAGACTTTTACAAGAATCA
*
165725 ATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCA
259 ATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAAAAGGCAAAGAAAAGATTTCCA
* *
165790 TGCAAAAGAAAGCCAAAAATATCACTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCAT
324 TGCAAAAGAAAACCAAAAATATCACTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCAC
* * * *
165855 GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCGTTTGAGGCACGAACATTGAATTTA
389 AAAATGAATGAAGATCCTTACTAGAATCCATGTTTATCCCATTTGAGGCACGAACATTGAATTTA
165920 CAAAAATTGATGGGAAAAAAGCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTATGA
454 CAAAAATTGATGGGAAAAAAGCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTATGA
* *
165985 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
519 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAAGTTTGT
*
166050 CTTATTTAAGAGAAAAACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCGACAC
584 CTTATTTAAGAGAAAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACAC
* * * *
166115 CAAATCATCAATGTCATGTATCCTAATGATGGAAAAGTGTTTTTGGATCCTAATATTGGAAAAAG
649 CAAAACATCAATGTCATGTATCCTAATGAAGGAAAAGTGTTTTTGGATCCCAATATTGGAAAAAA
* * *
166180 TGGAGACTTTTACGGGAATCAATGCATGTCTCATTTAAAGTACAAACTTTAATTTTAAGGAAAAT
714 TGGAGACTTTTACGAGAATCAATGCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAAT
* *
166245 GAGGCAAAGAAAAGAT
779 AAGGCAAAGAAAAGAA
* * * * * *
166261 TTCGATGCAAAAGAAAACCATCAATATCATTTATCCTAATTGGGAA-AATGTGTTTATTGTGCCT
1 TTCCATGCAAAAGAAAACCATCAATATCATTTATCCTTA-TGAGAAGACTATGTTTATGGTGCCT
166325 AATC
65 AATC
166329 ACGAAATGAA
Statistics
Matches: 782, Mismatches: 69, Indels: 21
0.90 0.08 0.02
Matches are distributed among these distances:
793 19 0.02
794 741 0.95
795 22 0.03
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (794 bp):
TTCCATGCAAAAGAAAACCATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
ATCCAGAAAACAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
TTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACCCTAAAGCAACAATATCATGTATCC
TAATGAAAGGAATGTGTTTTTTGGTTCCCAATCATAAAAGAATGGAGACTTTTACAAGAATCAAT
GCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAAAAGGCAAAGAAAAGATTTCCATG
CAAAAGAAAACCAAAAATATCACTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCACAA
AATGAATGAAGATCCTTACTAGAATCCATGTTTATCCCATTTGAGGCACGAACATTGAATTTACA
AAAATTGATGGGAAAAAAGCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTATGAGA
AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGAGTATTCAAGTTTGTCT
TATTTAAGAGAAAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCA
AAACATCAATGTCATGTATCCTAATGAAGGAAAAGTGTTTTTGGATCCCAATATTGGAAAAAATG
GAGACTTTTACGAGAATCAATGCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAATAA
GGCAAAGAAAAGAA
Found at i:165745 original size:318 final size:314
Alignment explanation
Indices: 162505--168393 Score: 2149
Period size: 317 Copynumber: 18.5 Consensus size: 314
162495 ATTGTCATCA
* * * *
162505 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTTACGGGAATCAATGTATGTCTCATTTA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGA--TTTTACGAGAATCAATGCATGTCTCATTTA
* * * *
162570 AAGTACAAACTTTGATTTTAAGGAAAACAAGTCAAAGAAAAGTTTTCCATGCAAAAGAAAACCAT
64 AAGTACAAACTTTGATTTTAA--AAAATAAGGCAAAG-AAAGATTTCCATGCAAAACAAAACCAT
* * * * * ** *
162635 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-GAACTGAATGAAGAT
126 CAATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAAGAATGGAGAT
*** * * * * * * * * * **
162699 CCTTACT-AGAATCCACGTTTGTCTTATTTGAG-GCACGAACTTAGAATTTA-CAA-AAATTATG
190 TAGTA-TGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAACGT-TG
* * * * * * * * *
162760 GGAA-AAAAGTGTTTCTTGTGAAACCAGATCATCAATATCCTGTATCCGT-AT-AAGAAGACTAT
253 GAAAGAAAAG-CTTTCTTGCGAAACCAAACCATCAATATCATGTATCC-TAATGAA-AGGAATGT
* * * ** * * * * ** *
162822 GTTTATGGTGCCTAATCTTGAAAAGAATGG-GATCAGTATGAGTATTAAAGTTTGTCTTATTTAA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGAT-TTTACGAGAATCAATGCATGTCTCATTTAA
* * * * * * * * *
162886 GAG-ACAAATTTTGATTTTATCGAAAACAT-TGG-AAAGAAAAGCCTAT-CTTGCGACACCAAAG
65 -AGTACAAACTTTGATTTTA---AAAA-ATAAGGCAAAG-AAAG-ATTTCCATGCAAAACAAAAC
* * * * * * *
162947 CATCAATGTCATGTATCCTAAT-A-AAGGTAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGG
123 CATCAATATCATGTATCCTTATGAGAA-G-AATATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * ** **
163010 AGACTT-TTATGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTGATTTTAAGGAAAAT
186 AGA-TTAGTATGAGTATTC-ATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTT-A--TCAAT
* * * * * ** * *
163072 AA-G--GCAAAGAAAAGATTCCCATGCAAAAGAAAACCATCAATATCATTTATCCTAA--AAGGG
246 AACGTTGGAAAGAAAAGCTT-TCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAA-AG
163132 AGAATGT
309 -GAATGT
* * * * * * ** ** * ** *
163139 GTTTATAGTGCCTAATCATGAAATGAATGAAGATCCCTAAAAGAATCCATGTTTGTCTCATTT-G
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGAT-TTTACGAGAATCAATGCATGTCTCATTTAA
* * * * ** ** * * * * * **
163203 AGCA-ATGAACTCAT-ACTTTACACAAATTGGTGGGAAGAAAGCGTAT-CTTGCGAAACCAAAGT
65 AGTACA--AACT-TTGATTTTA-AAAAATAAG-GCAAAGAAAG-ATTTCCATGCAAAACAAAACC
* *
163265 ATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAAT-GAGG
124 ATCAATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGA-G
* ** * *
163329 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-AC-AACTTTGATTCCATCAATAATGGTG
188 ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAACGTTG
* * *
163392 GAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGT
253 GAAAGAAAAGCTT-TCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAGGAATGT
* * * * *
163455 GTTGTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTATGAGAATCAGTGCATGTCTCATTTAA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGA-TTTTACGAGAATCAATGCATGTCTCATTTAA
* * * * *
163520 AATACAAACTTTGATTTTAAGGAAAATAAGGCGAAGAAAAGATTTTCACGCAAAAGAAAACCATC
65 AGTACAAACTTTGATTTTAA--AAAATAAGGCAAAG-AAAGATTTCCATGCAAAACAAAACCATC
* ** * * * * * *
163585 AATATCATTTATCCGAATGACG-AGAATGTGTTTATAGTGCCTAATCATGAAAGGAATGAAGATC
127 AATATCATGTATCCTTATGA-GAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATT
** * * * * * * * * * * *
163649 CTTACT-AGAATCCATGCTTGTCTCATTT-GGGGTATGAAA-TTAGAATTTA-CAAAAATTGGTG
191 AGTA-TGAGTATTCATGTTTGTCTCATTTAAGAGTA-CAAACTTTGATTTTATCAATAA-CGTTG
* * * * * * *
163710 GGAAG-AAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA-GACTAT
253 GAAAGAAAAG-CTTTCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGA-AAGGAATGT
* * * * * * * ** *
163772 GTTTATGGTGCCTAATCCAGAAAAGGATGTG-GATTAGTATGAGTATTC-ATGTTTGTCTTATTT
1 GTTTTTGGTGCCCAATCCTGAAAAGAATG-GAGATT-TTACGAG-AATCAATGCATGTCTCATTT
* * * * * * ** * *
163835 AAGAG-ACAAACTTTGATTCTATCAATAAT-GGTGGAAAGAAA-AGCTTCTCTTGTGACACCAAA
63 AA-AGTACAAACTTTGATT-T-TAAAAAATAAG-GCAAAGAAAGA-TTTC-CATGCAAAACAAAA
* * * * * * *
163897 GCATCAATGTCATGTATCCTAAT-A-AAGGGAATGTGTTCT-TGGTTCCTAAT-ATTAGAAAGAA
122 CCATCAATATCATGTATCCTTATGAGAA--GAATATGTT-TATGGTGCCTAATCCTGA-AAAGAA
* * * ** **
163958 TGGAGACTT-TTACGAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTGATTTTAAGGAA
183 TGGAGA-TTAGTATGAGTATTC-ATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTT-ATCAA
* * * ** * *
164020 -AACG-AGGCAAAGAAAAGATTTCCATGC-AAAAGAAAGCCATAAATATCATTTATCCTAATG-A
245 TAACGTTGG-AAAGAAAAGCTTT-CTTGCGAAACCAAA-CCATCAATATCATGTATCCTAATGAA
*
164081 GGAGAATGT
307 AG-GAATGT
* * * * * * * * * * ** * *
164090 GTTTATAGTACCTAATCATGAAATGAAAGAAGATCTTTACTAGAATCCATGTTTGTCTCGTTTGA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGAT-TTTACGAGAATCAATGCATGTCTCATTTAA
* * ** * * * * * * * * **
164155 GGCATGAACTTAGAATTTACAAAAATTGATGGGAAA-AAAGCGTTT-CTTGCCAAACCAAGTCAT
65 AGTACAAACTTTGATTTTA-AAAAA-T-AAGGCAAAGAAAG-ATTTCCATGCAAAACAAAACCAT
* * * *
164218 CAATATCCTGTATCCTTATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATT
126 CAATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATT
* * * *
164283 AGTATGAGTATTCATGTTTGTCTTATTTAAGAG-AAAAACTTTGATTTTATCATTAACGGTGGAA
191 AGTATGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAACGTTGGAA
* * * * * *
164347 AGAAAAGCTTCTCTTGCGACACCAAATCATTAATGTCATGTATCCTAATGAAGGGAAAGT
256 AGAAAAGCTT-TCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAGGAATGT
* * * *
164407 GTTTTTGGAT-CCTAAGCTTCG-AAAGAGTGGAGACTTTTACGAGAATCAATGCATGTCTCATTT
1 GTTTTTGG-TGCCCAATCCT-GAAAAGAATGGAGA-TTTTACGAGAATCAATGCATGTCTCATTT
* * ** * *
164470 AAAGTACAAACTTTGATTTCAAGGAAAATGAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACAA
63 AAAGTACAAACTTTGATTTTAA--AAAATAAGGCAAAG-AAAGATTTCCATGCAAAACAAAACCA
* * * * * * * *
164535 TCAATATCATTTATCCTAATTAGGAGAATGTGTTTATTGTGCCTAATCAC-GAAATGAATGAAGA
125 TCAATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAAGAATGGAGA
* * * * ** * *
164599 TCCTTGCTA-GA--A-TCTATGTTTGTCTAATTTGAG-GAATGAACTTAT-ACTTTA-CAAAAAT
189 T--TAG-TATGAGTATTC-ATGTTTGTCTCATTTAAGAGTACAAACTT-TGATTTTATCAATAA-
* * * * * * * * *
164657 TGGTGGGAAG-AAAGCGTTTCCTGCGAAAGCAAAGCATCAATATTATTTATCCTTATGAGAA-GA
248 CGTTGGAAAGAAAAGC-TTTCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGA-AAGGA
* *
164720 CTAT
311 ATGT
* * * * * * * ** *
164724 GTTTATGGTACCTAATCCAGAAAAGAATGTG-GATTAGTATGAGTATTC-ATGTTTGTCTTATTT
1 GTTTTTGGTGCCCAATCCTGAAAAGAATG-GAGATT-TTACGAG-AATCAATGCATGTCTCATTT
** ** * * * * ** *
164787 AAGAG-ACAAACTTTGA-TTCCATCAATAACGGTGGAAAGACAAG-CTTCTCTTGCGACCCTAAA
63 AA-AGTACAAACTTTGATTTTAAAAAATAA--G-GCAAAGA-AAGATTTC-CATGCAAAACAAAA
* * * * * * * * *
164849 GCAACATTATCATGTAT-CTTAATGA-AGGGAATGTGTTTTTTGGTTCCTGATCAT-AAAAGAAT
122 CCATCAATATCATGTATCCTT-ATGAGA-AGAATATG-TTTATGGTGCCTAATCCTGAAAAGAAT
* ** * ** **
164911 GGAGACTT-TTACAAG-AATCAATGCATGTCTCATTTAA-AGTACAAACTTTGATTTTAAGGAAA
184 GGAGA-TTAGTATGAGTATTC-ATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTT-A-TCAA
* * * * * * ** * *
164973 AAAAG--GCG-AAGAATAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATG-AG
245 TAACGTTG-GAAAGAAAAGCTTT-CTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAA
165034 GAGAATGT
308 G-GAATGT
* * ** * * * * * * ** * *
165042 GTTTATCGTGCTTAGTCAC--AAAATGATTGAAGATCCTTACTAGAATCCATGTTTATCCCATTT
1 GTTTTTGGTGCCCAATC-CTGAAAA-GAATGGAGAT-TTTACGAGAATCAATGCATGTCTCATTT
* * * * * ** * * * * *
165105 GAGGTACGAACTTAGAATTTACAAAAATTGTTGGGAAA-AAACTG-TTT-CTTGCGAAACCAAAT
63 AAAGTACAAACTTTGATTTTA-AAAAA-T-AAGGCAAAGAAA--GATTTCCATGCAAAACAAAAC
*
165167 CATCAATATTCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGA
123 CATCAATA-TCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGA
* * *
165231 GATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAG-ATAAACTTTGATTTTATCAATAACGTT
187 GATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAACGTT
* * * *
165295 GGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAATGTCATGTATCCTAATG-AAGGTAATGT
252 GGAAAGAAAAGCTT-TCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAGG-AATGT
* * * *
165359 GTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGACTCATCTAA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGA-TTTTACGAGAATCAATGCATGTCTCATTTAA
* *
165424 AGTACAAACTTTG-TCTTTAAGGAAAATAAGGCAAAGAAAGTAATTCCATGCAAAAGAAAACCAT
65 AGTACAAACTTTGAT-TTTAA--AAAATAAGGCAAAGAAAG-ATTTCCATGCAAAACAAAACCAT
* * * *
165488 CAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGGATT
126 CAATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATT
* *
165553 AGTATGAGTATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCTATCAATAACGTTGGAA
191 AGTATGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAACGTTGGAA
* * * * * *
165617 AGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTTATGTATCCTAATGAAAGGAATGT
256 AGAAAAGCTT-TCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAGGAATGT
* * *
165677 GTTTTTGGTTCCCAATCCTGAAAAGATTGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGA-TTTTACGAGAATCAATGCATGTCTCATTTAA
* * **
165742 AGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAGCCAAA
65 AGTACAAACTTTGATTTTAA--AAAATAAGGCAAAG-AAAGATTTCCATGCAAAACAAAACCATC
* * * * * * * * * *
165807 AATATCACT-TATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCATGAAATGAATGAAGATC
127 AATATCA-TGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATT
** * * * * * * * * * * *
165871 CTTACT-AGAATCCATGTTTGTCTCGTTTGAG-GCACGAACATTGAATTTA-CAAAAATTGATGG
191 AGTA-TGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAA-CGTTGG
* * * * * * * *
165933 GAA-AAAAGCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTATGAGAA-GACTAT
254 AAAGAAAAGC-TTTCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGA-AAGGAATGT
* * * * * * ** *
165994 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGATT-TTACGAG-AATCAATGCATGTCTCATTTA
* ** * * * * * * * *
166058 AGAG-AAAAACTTTGATTTT-ATCATTAACGGTGGAAAGAAA-AGCTTCTCTTGCGACACCAAAT
64 A-AGTACAAACTTTGATTTTAAAAAATAA--G-GCAAAGAAAGA-TTTC-CATGCAAAACAAAAC
* * * * ** *
166120 CATCAATGTCATGTATCCTAATGATGGAA-AA-GTGTTTTTGGAT-CCTAATATTGGAAAA-AGT
123 CATCAATATCATGTATCCTTATGA--GAAGAATATGTTTATGG-TGCCTAATCCT-GAAAAGAAT
* * * * ** * **
166181 GGAGACTT-TTACG-GGAATCAATGCATGTCTCATTTAA-AGTACAAACTTTAATTTTAAGGAA-
184 GGAGA-TTAGTATGAGTATTC-ATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTT-ATCAAT
* * * * * ** * *
166242 AATG-AGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATATCATTTATCCTAATTGGGA
246 AACGTTGG-AAAGAAAAGCTTTC-TTGCGAAACCAAACCATCAATATCATGTATCCTAA-T-GAA
166306 A--AATGT
307 AGGAATGT
* * * * * * ** * *
166312 GTTTATT-GTGCCTAATCAC-GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAACTT
1 GTTT-TTGGTGCCCAATC-CTGAAAAGAATGGAGAT-TTTACGAGAATCAATGCATGTCTCATTT
* * * ** * ** ** * * *
166375 GAGGAATGAACTTAT-ACTTTACAAAAATTGGTGGGAGGAAAGAGTTTCCCATG--AAACCAAAG
63 AAAGTACAAACTT-TGATTTTA-AAAAATAAG-GCAAAGAAAGA-TTT-CCATGCAAAACAAAAC
* * * * *
166437 CATCAATATCATTTATCCTTATTACAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGTG-
123 CATCAATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATG-GA
**
166501 GATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAG-ACAAACTTTGATTCCATCAATAACAG-
187 GATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAAC-GT
* * * * *
166564 TGGAAAGACAAA-CTTCTCTTGCGACACCAAAGCAAT-ATTATCATGTATCTTAATGAAGGGAAT
251 TGGAAAGA-AAAGCTT-TCTTGCGAAACCAAA-CCATCAATATCATGTATCCTAATGAAAGGAAT
166627 GT
313 GT
* * * *
166629 GTTTTTTGGTTCCCAATCAT-AAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTAA
1 G-TTTTTGGTGCCCAATCCTGAAAAGAATGGAGA-TTTTACGAGAATCAATGCATGTCTCATTTA
* * ** * *
166693 AAGTACAAACTTTGAATTTAAGGGAAAAAAAATCGAAGAAAAGATTTCCATGCAAAAGAAAACCA
64 AAGTACAAACTTTGATTTTAA---AAAATAAGGCAAAG-AAAGATTTCCATGCAAAACAAAACCA
* * * * * *
166758 TCAATATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCAC-GAAATGAATGAAGA
125 TCAATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATC-CTGAAAAGAATGGAGA
*** * * * * * * * * * * *
166822 TCCTTACT-AGAATCCATGTTAGTGTCATTTGAG-GCACGAACTTAGAATTTA-CAAAAATTGTT
189 TTAGTA-TGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAA-CGTT
** * * * * *
166884 GGCAAAGAACCG-TTTCTTGCGAAACCAAATCATCAATATTCA-GTATCCTTACGAGAA-GACTA
252 GG-AAAGAAAAGCTTTCTTGCGAAACCAAACCATCAATA-TCATGTATCCTAATGA-AAGGAATG
166946 T
314 T
* * * * * * * ** *
166947 GTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAA-GTTTGTCTTATTTA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGATT-TTACGAG-AATCAATGCATGTCTCATTTA
* ** * * * * * *
167011 AGAG-ATAAACTTTGATTTT-ATCAATAACGTTGGAAAGAAA-AGCTTCTCTTGTGACACCAAAA
64 A-AGTACAAACTTTGATTTTAAAAAATAA-G--GCAAAGAAAGA-TTTC-CATG-CAAAACAAAA
** * * * * * * * *
167073 -CATCAACGTCATGTATCCTAATGA-AGGGAATATATTTCTGGTTCCCAATCTTGGAAAGAATGG
122 CCATCAATATCATGTATCCTTATGAGA-AGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * * ** * * * **
167136 GGACTT-TTATGAG-AATCAATGCATGACTCATCTAA-AGTACAAAGTTTGATTTTAAGGAAAAT
186 AGA-TTAGTATGAGTATTC-ATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTT-A--TCAAT
* * * * * ** * * *
167198 AA-G--GCAAAGAAAGGATTTCCCTGCAAAAGAAAACCATCAGTATCATTTATCCTTATGAGAA-
246 AACGTTGGAAAGAAAAGCTTT-CTTGCGAAACCAAACCATCAATATCATGTATCCTAATGA-AAG
* *
167259 GACTAT
309 GAATGT
* * * * * * ** * *
167265 GTTTATGGTGCCTAATCCTGAAAACAAT-GAGGATTAGTATGAGTAGTC-ATGTTTGCCTTA-TT
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGA-GATT-TTACGAG-AATCAATGCATGTCTCATTT
* * * ** * * * * * *
167327 AAAGAGATAAACTTTGATTCTATCAAAAA-CGGTGGAAAGACAAG-CTTCTCTTGCGACACCAAA
63 AAAG-TACAAACTTTGATT-T-TAAAAAATAAG-GCAAAGA-AAGATTTC-CATGCAAAACAAAA
* * * * * * * * *
167390 GCATCGATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCCTGAAAAAAATTG
122 CCATCAATATCATGTATCCTTATGAGAA-GAATATGTTTATGGTGCCTAATCCTGAAAAGAA-TG
* * * * ** * * **
167454 GAGACTATTACGAG-AATCAATGCATGCCACATTTAA-AGTACAAACTTTGATTTTAAGGAA-AA
185 GAGATTAGTATGAGTATTC-ATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTT-ATCAATAA
* * * ** * *
167516 --TTAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATG-AGGA
248 CGTT-GG-AAAGAAAAGCTTT-CTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAG-
167578 GAATGT
309 GAATGT
* * * * * * * * * * ** *
167584 GTTTATCGTGCCTAATCACAGAATA-AATGAAGATCCTTACTAAAATCCATGTTTGTCTCATTTG
1 GTTTTTGGTGCCCAATC-CTGAAAAGAATGGAGAT-TTTACGAGAATCAATGCATGTCTCATTTA
* * * * * * * * * *
167648 AGGTACGAACTTAGAATTTACAAAAATTTATGGGAAA-AAACCG-TTT-CTTGCGAAACCAAATC
64 AAGTACAAACTTTGATTTTA-AAAAA--TAAGGCAAAGAAA--GATTTCCATGCAAAACAAAACC
* *
167710 ATCAATATTCA-GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-AATGGGG
124 ATCAATA-TCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAG
* * *
167773 ATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAG-ATAAACTTTGATTTTATCAATAACGTTG
188 ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAACGTTG
* * * ** *
167837 GAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCATGTATCCTAATGAAGGGAATGT
253 GAAAGAAAAGCTT-TCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAGGAATGT
* * * * * * * ** *
167900 ATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTACGAAAATCAATGCATGAGTCATCTAA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGA-TTTTACGAGAATCAATGCATGTCTCATTTAA
* * *
167965 AGTACAAACTTTCATTTTAAGGAAAATAAGGCAAAGAAAGGATTTTCATGCAAAAGAAAACCATC
65 AGTACAAACTTTGATTTTAA--AAAATAAGGCAAAGAAA-GATTTCCATGCAAAACAAAACCATC
* * * * * *
168030 AGTATCATTTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTGAAAACAATGGGGATTA
127 AATATCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTA
* * * * * *
168095 GTATGAGTAGTCATGTTTGCCTTA-TTAAGGAG-ACAAACTTTGATTCTATCAAAAACGGTGGAA
192 GTATGAGTATTCATGTTTGTCTCATTTAA-GAGTACAAACTTTGATTTTATCAATAACGTTGGAA
* * * * * *
168158 AGACAAGCTTCTCTTGCGACACTAAAGCATCGATGTCATGTATCCTAATGAAAGGAATGT
256 AGAAAAGCTT-TCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAGGAATGT
* * * *
168218 GTTTTTGGTTCCCAATCCTGAAAAGATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTAA
1 GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGA-TTTTACGAGAATCAATGCATGTCTCATTTAA
* *
168283 AGTACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATC
65 AGTACAAACTTTGATTTT-A-AAAAATAAGGCAAAG-AAAGATTTCCATGCAAAACAAAACCATC
* * *
168348 AATATCATGTAT-CTTGATGAGGAGAATGTGTTTATCGTGCCTAATC
127 AATATCATGTATCCTT-ATGAGAAGAATATGTTTATGGTGCCTAATC
168394 ACAGAATGAA
Statistics
Matches: 4197, Mismatches: 1029, Indels: 691
0.71 0.17 0.12
Matches are distributed among these distances:
313 6 0.00
314 21 0.01
315 168 0.04
316 424 0.10
317 1632 0.39
318 1547 0.37
319 341 0.08
320 47 0.01
321 11 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (314 bp):
GTTTTTGGTGCCCAATCCTGAAAAGAATGGAGATTTTACGAGAATCAATGCATGTCTCATTTAAA
GTACAAACTTTGATTTTAAAAAATAAGGCAAAGAAAGATTTCCATGCAAAACAAAACCATCAATA
TCATGTATCCTTATGAGAAGAATATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTAT
GAGTATTCATGTTTGTCTCATTTAAGAGTACAAACTTTGATTTTATCAATAACGTTGGAAAGAAA
AGCTTTCTTGCGAAACCAAACCATCAATATCATGTATCCTAATGAAAGGAATGT
Found at i:167006 original size:953 final size:952
Alignment explanation
Indices: 165485--167281 Score: 2793
Period size: 953 Copynumber: 1.9 Consensus size: 952
165475 AAAAGAAAAC
*
165485 CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGG
1 CATCAATATCATTTATCCTTATGACAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGG
* *
165550 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGTTGG
66 ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCCATCAATAACGTTGG
* * * *
165615 AAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTTATGTATCCTAATGAAAGGAATGTGTT
131 AAAGACAAACTTCTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTT
* * *
165680 TTTGGTTCCCAATCCTGAAAAGATTGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGT
196 TTTGGTTCCCAATCATGAAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTAAAAGT
* * * *
165745 ACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAGCCAAAAAT
261 ACAAACTTTGAATTTAAGGAAAAAAAAGCAAAGAAAAGATTTCCATGCAAAAGAAAACCAAAAAT
*
165810 ATCACTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCATGAAATGAATGAAGATCCTTA
326 ATCACTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCACGAAATGAATGAAGATCCTTA
* * *
165875 CTAGAATCCATGTTTGTCTCGTTTGAGGCACGAACATTGAATTTACAAAAATTGATGGGAAAAAA
391 CTAGAATCCATGTTAGTCTCATTTGAGGCACGAACATTGAATTTACAAAAATTGATGGCAAAAAA
* *
165940 GCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTATGAGAAGACTATGTTTATGGTGC
456 CCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTACGAGAAGACTATGTTTATGGTGC
* *
166005 CTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAAAACTT
521 CTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAAAAACTT
* * *
166070 TGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAATCATCAATGTCATGTA
586 TGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAACATCAACGTCATGTA
* * * * *
166135 TCCTAATG-ATGGAAAAGTGTTTTTGGATCCTAATATTGGAAA-AAGTGGAGACTTTTACGGGAA
651 TCCTAATGAAGGGAAAA-TATTTCTGGATCCCAATATTGGAAAGAA-TGGAGACTTTTACGAGAA
* * *
166198 TCAATGCATGTCTCATTTAAAGTACAAACTTTAATTTTAAGGAAAATGAGGCAAAGAAAAGATTT
714 TCAATGCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTT
* * * *
166263 CGATGCAAAAGAAAACCATCAATATCATTTATCCTAATTGGGAA-AATGTGTTTATTGTGCCTAA
779 CCATGCAAAAGAAAACCATCAATATCATTTATCCTAA-TGAGAAGAATATGTTTATGGTGCCTAA
166327 TCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAACTTGAGGAATGAACTTATAC
843 TCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAACTTGAGGAATGAACTTATAC
166392 TTTACAAAAATTGGTGGGAGGAAAGAGTTTCCCATGAAACCAAAG
908 TTTACAAAAATTGGTGGGAGGAAAGAGTTTCCCATGAAACCAAAG
* * * *
166437 CATCAATATCATTTATCCTTATTACAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGTGG
1 CATCAATATCATTTATCCTTATGACAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGG
166502 ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCCATCAATAACAG-TG
66 ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCCATCAATAAC-GTTG
* * *
166566 GAAAGACAAACTTCTCTTGCGACACCAAAGCAAT-ATTATCATGTATCTTAATGAAGGGAATGTG
130 GAAAGACAAACTTCTCTTGCGACACCAAAGC-ATCAATATCATGTATCCTAATGAAAGGAATGTG
166630 TTTTTTGGTTCCCAATCAT-AAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTAAA
194 -TTTTTGGTTCCCAATCATGAAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTAAA
* * *
166694 AGTACAAACTTTGAATTTAAGGGAAAAAAAATCGAAGAAAAGATTTCCATGCAAAAGAAAACCAT
258 AGTACAAACTTTGAATTTAA-GGAAAAAAAAGCAAAGAAAAGATTTCCATGCAAAAGAAAACCAA
* * * * *
166759 CAATATCA-TGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCACGAAATGAATGAAGAT
322 AAATATCACT-TATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCACGAAATGAATGAAGAT
* *
166823 CCTTACTAGAATCCATGTTAGTGTCATTTGAGGCACGAAC-TTAGAATTTACAAAAATTGTTGGC
386 CCTTACTAGAATCCATGTTAGTCTCATTTGAGGCACGAACATT-GAATTTACAAAAATTGATGGC
* * *
166887 AAAGAACCGTTTCTTGCGAAACCAAATCATCAATATTC-AGTATCCTTACGAGAAGACTATGTTT
450 AAAAAACCGTTTCTTGCCAAACCAAATCATCAATATCCTA-TATCCTTACGAGAAGACTATGTTT
166951 ATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGA
514 ATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGA
* * *
167016 TAAACTTTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACG
579 AAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAACATCAACG
* * * * *
167081 TCATGTATCCTAATGAAGGGAATATATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTAT
644 TCATGTATCCTAATGAAGGGAAAATATTTCTGGATCCCAATATTGGAAAGAATGGAGACTTTTAC
* * *
167146 GAGAATCAATGCATGACTCATCTAAAGTACAAAGTTTGATTTTAAGGAAAATAAGGCAAAGAAAG
709 GAGAATCAATGCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAA
* * * *
167211 GATTTCCCTGCAAAAGAAAACCATCAGTATCATTTATCCTTATGAGAAGACTATGTTTATGGTGC
774 GATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATGGTGC
167276 CTAATC
839 CTAATC
167282 CTGAAAACAA
Statistics
Matches: 763, Mismatches: 72, Indels: 19
0.89 0.08 0.02
Matches are distributed among these distances:
952 245 0.32
953 510 0.67
954 8 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (952 bp):
CATCAATATCATTTATCCTTATGACAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGG
ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCCATCAATAACGTTGG
AAAGACAAACTTCTCTTGCGACACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTT
TTTGGTTCCCAATCATGAAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTAAAAGT
ACAAACTTTGAATTTAAGGAAAAAAAAGCAAAGAAAAGATTTCCATGCAAAAGAAAACCAAAAAT
ATCACTTATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCACGAAATGAATGAAGATCCTTA
CTAGAATCCATGTTAGTCTCATTTGAGGCACGAACATTGAATTTACAAAAATTGATGGCAAAAAA
CCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTACGAGAAGACTATGTTTATGGTGC
CTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAAAAACTT
TGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAACATCAACGTCATGTA
TCCTAATGAAGGGAAAATATTTCTGGATCCCAATATTGGAAAGAATGGAGACTTTTACGAGAATC
AATGCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCC
ATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCA
CGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAACTTGAGGAATGAACTTATACTTT
ACAAAAATTGGTGGGAGGAAAGAGTTTCCCATGAAACCAAAG
Found at i:167727 original size:953 final size:949
Alignment explanation
Indices: 165485--167667 Score: 2338
Period size: 953 Copynumber: 2.3 Consensus size: 949
165475 AAAAGAAAAC
* * * * * * *
165485 CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGGGG
1 CATCAATATCATGTATCCTAATGACAAGAATATGTTTATGGTGCCCAATCCTGAAAAAAATGTGG
* * * ** * ** * *
165550 ATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA-TAACGTTG
66 ACTAGTACGAGTAATCATGCATGCCACATTTAAGAGACAAACTTTGATTC--TCAAGAAAAG-TG
* * * * * * * * * *
165614 GAAAGACAAGCTTCTCTTGTGACACCAAAGC-ATCAATGTTATGTATCCTAATGAAAGGAATGTG
128 GAAAGAAAAACTTCTCATGCGAAAACAAAACAAT-AATATCATGTATCCTAATGAAGGGAATGTG
* * * * * *
165678 TTTT-TGGTTCCCAATC-CTGAAAAGATTGGAGACTTTTACAAGAATCAATGCATGTCTCATTTA
192 TTTTATCGTGCCCAATCAC--AAAAGAATGAAGACTCTTACAAGAATCAATGCATGTCTCATTAA
* * * ** * * * *
165741 AAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAGCCAA
255 AAGTACAAACTTAGAATTTAA-GAAAAAAAATCGAAGAAAAGATTTCCATGCAAAACAAAACCAT
* * * *
165806 AAATATCACT-TATCCTAATAAGGAGAATGTGTTTATAGTACCTAATCATGAAATGAATGAAGAT
319 CAATATCA-TGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGAT
* * *
165870 CCTTACTAGAATCCATGTTTGTCTCGTTTGAGGCACGAACATTGAATTTACAAAAATTGATGGGA
383 CCTTACTAGAATCCATGTTAGTCTCATTTGAGGCACGAACATTGAATTTACAAAAATTGATGGCA
* *
165935 AAAAAGCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTATGAGAAGACTATGTTTAT
448 AAAAACCGTTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTACGAGAAGACTATGTTTAT
* *
166000 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGAAA
513 GGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAAA
* * *
166065 AACTTTGATTTTATCATTAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAATCATCAATGTC
578 AACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAACATCAACGTC
* * * * *
166130 ATGTATCCTAATGATGGAAAAGTGTTTTTGGATCCTAATATTGGAAAAAGTGGAGACTTTTACGG
643 ATGTATCCTAATGAGGGAAAAGTATTTCTGGATCCCAATATTGGAAAAAGTGGAGACTTTTACGA
* * *
166195 GAATCAATGCATGTCTCATTTAAAGTACAAACTTTAATTTTAAGGAAAATGAGGCAAAGAAAAGA
708 GAATCAATGCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGA
* * * *
166260 TTTCGATGCAAAAGAAAACCATCAATATCATTTATCCTAATTGGGAAAATGTGTTTATTGTGCCT
773 TTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATTGAGAAAATATGTTTATGGTGCCT
** ** * * * *
166325 AATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTAACTTGAGGAATGAACTTAT
838 AATCACGAAAACAATGAAGATCAGTACTAGAATCCATGTTTGCCTAACTTAAAGAATAAACTTAT
* * * *
166390 ACTTTACAAAAATTGGTGGGAGGAAAGAGTTTCCCATGAAACCAAAG
903 ACTTTACAAAAATCGGTGGAAAGAAAGAGCTTCCCATGAAACCAAAG
* * * * * * *
166437 CATCAATATCATTTATCCTTATTACAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGTGG
1 CATCAATATCATGTATCCTAATGACAAGAATATGTTTATGGTGCCCAATCCTGAAAAAAATGTGG
* * * ** * * * *
166502 ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCCATCAATAACAGTGG
66 ACTAGTACGAGTAATCATGCATGCCACATTTAAGAGACAAACTTTGATT-C-TCAAGAAAAGTGG
* * * * * * *
166567 AAAGACAAACTTCTCTTGCGACACCAAAGCAATATTATCATGTATCTTAATGAAGGGAATGTGTT
129 AAAGAAAAACTTCTCATGCGAAAACAAAACAATAATATCATGTATCCTAATGAAGGGAATGTGTT
* * * * * *
166632 TTTTGGTTCCCAATCATAAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCATTAAAAGT
194 TTATCGTGCCCAATCACAAAAGAATGAAGACTCTTACAAGAATCAATGCATGTCTCATTAAAAGT
* *
166697 ACAAACTTTGAATTTAAGGGAAAAAAAATCGAAGAAAAGATTTCCATGCAAAAGAAAACCATCAA
259 ACAAACTTAGAATTTAA--GAAAAAAAATCGAAGAAAAGATTTCCATGCAAAACAAAACCATCAA
* *
166762 TATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCACGAAATGAATGAAGATCCTT
322 TATCATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTT
* * *
166827 ACTAGAATCCATGTTAGTGTCATTTGAGGCACGAAC-TTAGAATTTACAAAAATTGTTGGCAAAG
387 ACTAGAATCCATGTTAGTCTCATTTGAGGCACGAACATT-GAATTTACAAAAATTGATGGCAAAA
* *
166891 AACCGTTTCTTGCGAAACCAAATCATCAATATTC-AGTATCCTTACGAGAAGACTATGTTTATGG
451 AACCGTTTCTTGCCAAACCAAATCATCAATATCCTA-TATCCTTACGAGAAGACTATGTTTATGG
*
166955 TGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGATAAA
515 TGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAAAAA
* *
167020 CTTTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCAT
580 CTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAACATCAACGTCAT
* * * * *
167085 GTATCCTAATGAAGGGAATA-TATTTCTGGTTCCCAATCTTGGAAAGAA-TGGGGACTTTTATGA
645 GTATCCTAATG-AGGGAAAAGTATTTCTGGATCCCAATATTGGAAA-AAGTGGAGACTTTTACGA
* * *
167148 GAATCAATGCATGACTCATCTAAAGTACAAAGTTTGATTTTAAGGAAAATAAGGCAAAGAAAGGA
708 GAATCAATGCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGA
* * * *
167213 TTTCCCTGCAAAAGAAAACCATCAGTATCATTTATCCTTA-TGAGAAGACTATGTTTATGGTGCC
773 TTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATTGAGAA-AATATGTTTATGGTGCC
* * * *
167277 TAATC-CTGAAAACAATGAGGATTAGTA-TGAGTAGT-CATGTTTGCCTTA-TTAAAGAGATAAA
837 TAATCAC-GAAAACAATGAAGATCAGTACT-AG-AATCCATGTTTGCCTAACTTAAAGA-ATAAA
* * * *
167338 CTT-TGA-TTCTATCAAAAA-CGGTGGAAAGACA-AGCTTCTCTTGCGACACCAAAG
898 CTTAT-ACTT-TA-CAAAAATCGGTGGAAAGAAAGAGCTTCCCAT--GAAACCAAAG
* * * * *
167391 CATCGATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCCAATCCTGAAAAAAAT-TG
1 CATCAATATCATGTATCCTAATGACAA-GAATATGTTTATGGTGCCCAATCCTGAAAAAAATGT-
* *
167454 GAGACTATTACGAG-AATCAATGCATGCCACATTTAA-AGTACAAACTTTGATT-TTAAGGAAAA
64 G-GACTAGTACGAGTAATC-ATGCATGCCACATTTAAGAG-ACAAACTTTGATTCTCAA-GAAAA
* * * * *
167516 TTAGGCAAAGAAAAGATTTC-CATGC-AAAAGAAAACCATCAATATCATGTATCCTGATG-AGGA
125 GT-GG-AAAGAAAA-ACTTCTCATGCGAAAACAAAACAAT-AATATCATGTATCCTAATGAAGG-
* * **
167578 GAATGTG-TTTATCGTGCCTAATCACAGAATA-AATGAAGA-TCCTTACTAA-AATCCATGTTTG
185 GAATGTGTTTTATCGTGCCCAATCACA-AA-AGAATGAAGACT-CTTAC-AAGAATCAATGCATG
** * *
167639 TCTCATTTGAGGTACGAACTTAGAATTTA
246 TCTCATTAAAAGTACAAACTTAGAATTTA
167668 CAAAAATTTA
Statistics
Matches: 1051, Mismatches: 144, Indels: 69
0.83 0.11 0.05
Matches are distributed among these distances:
952 264 0.25
953 560 0.53
954 105 0.10
955 115 0.11
956 7 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (949 bp):
CATCAATATCATGTATCCTAATGACAAGAATATGTTTATGGTGCCCAATCCTGAAAAAAATGTGG
ACTAGTACGAGTAATCATGCATGCCACATTTAAGAGACAAACTTTGATTCTCAAGAAAAGTGGAA
AGAAAAACTTCTCATGCGAAAACAAAACAATAATATCATGTATCCTAATGAAGGGAATGTGTTTT
ATCGTGCCCAATCACAAAAGAATGAAGACTCTTACAAGAATCAATGCATGTCTCATTAAAAGTAC
AAACTTAGAATTTAAGAAAAAAAATCGAAGAAAAGATTTCCATGCAAAACAAAACCATCAATATC
ATGTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTA
GAATCCATGTTAGTCTCATTTGAGGCACGAACATTGAATTTACAAAAATTGATGGCAAAAAACCG
TTTCTTGCCAAACCAAATCATCAATATCCTATATCCTTACGAGAAGACTATGTTTATGGTGCCTA
ATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAAAAACTTTGA
TTTTATCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAACATCAACGTCATGTATCC
TAATGAGGGAAAAGTATTTCTGGATCCCAATATTGGAAAAAGTGGAGACTTTTACGAGAATCAAT
GCATGACTCATCTAAAGTACAAACTTTAATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG
CAAAAGAAAACCATCAATATCATTTATCCTAATTGAGAAAATATGTTTATGGTGCCTAATCACGA
AAACAATGAAGATCAGTACTAGAATCCATGTTTGCCTAACTTAAAGAATAAACTTATACTTTACA
AAAATCGGTGGAAAGAAAGAGCTTCCCATGAAACCAAAG
Found at i:168081 original size:794 final size:794
Alignment explanation
Indices: 166437--168875 Score: 3893
Period size: 794 Copynumber: 3.1 Consensus size: 794
166427 GAAACCAAAG
* * * * * *
166437 CATCAATATCATTTATCCTTATTACAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGTGG
1 CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTGAAAACAATGAGG
* * * * * * *
166502 ATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCCATCAATAACAGTGG
66 ATTAGTATGAGTAGTCATGTTTGCCTTATTAAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
* * * *
166567 AAAGACAAACTTCTCTTGCGACACCAAAGCAAT--ATTATCATGTATCTTAATGAAGGGAATGTG
131 AAAGACAAGCTTCTCTTGCGACACCAAAGC-ATCGA-TGTCATGTATCCTAATGAAAGGAATGTG
* * * * * *
166630 TTTTTTGGTTCCCAATCAT-AAAAGAA-TGGAGACTTTTACAAGAATCAATGCATGTCTCATTAA
194 -TTTTTGGTTCCCAATCCTGAAAAAAATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTA
* * ** *
166693 AAGTACAAACTTTGAATTTAAGGGAAAAAAAATCGAAGAAAAGATTTCCATGCAAAAGAAAACCA
258 AAGTACAAACTTTGATTTTAA-GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCA
166758 TCAATATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCAC-GAAATGAATGAAGA
322 TCAATATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCACAG-AATGAATGAAGA
* * * *
166822 TCCTTACTAGAATCCATGTTAGTGTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGTTGGC
386 TCCTTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTACAAAAATT-TTGGG
* *
166887 AAAGAACCGTTTCTTGCGAAACCAAATCATCAATATTCAGTATCCTTACGAGAAGACTATGTTTA
450 AAAAAACCGTTTCTTGCGAAACCAAATCATCAATATTCAGTATCCTTATGAGAAGACTATGTTTA
166952 TGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAT
515 TGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGAT
167017 AAACTTTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGT
580 AAACTTTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGT
* *
167082 CATGTATCCTAATGAAGGGAATATATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTATG
645 CATGTATCCTAATGAAGGGAATGTATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTACG
*
167147 AGAATCAATGCATGACTCATCTAAAGTACAAAGTTTGATTTTAAGGAAAATAAGGCAAAGAAAGG
710 AGAATCAATGCATGACTCATCTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAGG
*
167212 ATTTCCCTGCAAAAGAAAAC
775 ATTTCCATGCAAAAGAAAAC
* *
167232 CATCAGTATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAACAATGAGG
1 CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTGAAAACAATGAGG
*
167297 ATTAGTATGAGTAGTCATGTTTGCCTTATTAAAGAGATAAACTTTGATTCTATCAAAAACGGTGG
66 ATTAGTATGAGTAGTCATGTTTGCCTTATTAAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
167362 AAAGACAAGCTTCTCTTGCGACACCAAAGCATCGATGTCATGTATCCTAATGAAAGGAATGTGTT
131 AAAGACAAGCTTCTCTTGCGACACCAAAGCATCGATGTCATGTATCCTAATGAAAGGAATGTGTT
*
167427 TTTGGTTCCCAATCCTGAAAAAAATTGGAGACTATTACGAGAATCAATGCATGCCACATTTAAAG
196 TTTGGTTCCCAATCCTGAAAAAAATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTAAAG
*
167492 TACAAACTTTGATTTTAAGGAAAATTAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAA
261 TACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAA
*
167557 TATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCACAGAATAAATGAAGATCCTT
326 TATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCACAGAATGAATGAAGATCCTT
*
167622 ACTAAAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTACAAAAATTTATGGGAAAAA
391 ACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTACAAAAATTT-TGGGAAAAA
167687 ACCGTTTCTTGCGAAACCAAATCATCAATATTCAGTATCCTTATGAGAAGACTATGTTTATGGTG
455 ACCGTTTCTTGCGAAACCAAATCATCAATATTCAGTATCCTTATGAGAAGACTATGTTTATGGTG
167752 CCTAATCCTG-AAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGATAAACT
520 CCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGATAAACT
167816 TTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCATGT
585 TTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCATGT
*
167881 ATCCTAATGAAGGGAATGTATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTACGAAAAT
650 ATCCTAATGAAGGGAATGTATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTACGAGAAT
* * *
167946 CAATGCATGAGTCATCTAAAGTACAAACTTTCATTTTAAGGAAAATAAGGCAAAGAAAGGATTTT
715 CAATGCATGACTCATCTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAGGATTTC
168011 CATGCAAAAGAAAAC
780 CATGCAAAAGAAAAC
* *
168026 CATCAGTATCATTTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTGAAAACAATGGGG
1 CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTGAAAACAATGAGG
*
168091 ATTAGTATGAGTAGTCATGTTTGCCTTATTAAGGAGACAAACTTTGATTCTATCAAAAACGGTGG
66 ATTAGTATGAGTAGTCATGTTTGCCTTATTAAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
*
168156 AAAGACAAGCTTCTCTTGCGACACTAAAGCATCGATGTCATGTATCCTAATGAAAGGAATGTGTT
131 AAAGACAAGCTTCTCTTGCGACACCAAAGCATCGATGTCATGTATCCTAATGAAAGGAATGTGTT
*
168221 TTTGGTTCCCAATCCTG-AAAAGATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTAAAG
196 TTTGGTTCCCAATCCTGAAAAAAATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTAAAG
* *
168285 TACAAACTTTGATTTTAAGAAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAA
261 TACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAA
* *
168350 TATCATGTATCTTGATGAGGAGAATGTGTTTATCGTGCCTAATCACAGAATGAATAAAGATCCTT
326 TATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCACAGAATGAATGAAGATCCTT
* *
168415 ACTAGAATCCATCTTTGTCTCATTTGAGGTACGAACATAGAATTTACAAAAATTTTTGGGAAAAA
391 ACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTACAAAAA-TTTTGGGAAAAA
* *
168480 ACCGTTTCTTGCGAAACGAAATCATCAATATTCAATATCCTTATGAGAAGACTATGTTTATGGTG
455 ACCGTTTCTTGCGAAACCAAATCATCAATATTCAGTATCCTTATGAGAAGACTATGTTTATGGTG
* * *
168545 CCTAATCCTGAAAAAAAGGGGGATTAGTCTGAGTATTCAAGTTTGTCTTATTTAAGAGACAAACT
520 CCTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGATAAACT
* * * * * * *
168610 TTGATTCTATCAATAATGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGT
585 TTGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCATGT
* ** * * * * *
168675 ATCCTAATGAAAGGAATGCGTTTTTGGTTCCCAATCCTGAAAAGATTGGAGACTTTTACGAGAAT
650 ATCCTAATGAAGGGAATGTATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTACGAGAAT
* * * * *
168740 CAATGCATGTCTTATTTAAAGTACAAACTTTGATTTTCAGGAAAATAAGGCAAAGAAAAGATTTC
715 CAATGCATGACTCATCTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAGGATTTC
* **
168805 CATGCAGAAGAAAGG
780 CATGCAAAAGAAAAC
** * * * * * *
168820 CAAAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCATGAAA
1 CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTGAAA
168876 TGAATGAAGA
Statistics
Matches: 1532, Mismatches: 104, Indels: 17
0.93 0.06 0.01
Matches are distributed among these distances:
793 300 0.20
794 767 0.50
795 411 0.27
796 54 0.04
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (794 bp):
CATCAATATCATTTATCCTTATGAGAAGACTATGTTTATGGTACCTAATCCTGAAAACAATGAGG
ATTAGTATGAGTAGTCATGTTTGCCTTATTAAAGAGACAAACTTTGATTCTATCAAAAACGGTGG
AAAGACAAGCTTCTCTTGCGACACCAAAGCATCGATGTCATGTATCCTAATGAAAGGAATGTGTT
TTTGGTTCCCAATCCTGAAAAAAATTGGAGACTTTTACGAGAATCAATGCATGCCACATTTAAAG
TACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAA
TATCATGTATCCTGATGAGGAGAATGTGTTTATCGTGCCTAATCACAGAATGAATGAAGATCCTT
ACTAGAATCCATGTTTGTCTCATTTGAGGTACGAACTTAGAATTTACAAAAATTTTGGGAAAAAA
CCGTTTCTTGCGAAACCAAATCATCAATATTCAGTATCCTTATGAGAAGACTATGTTTATGGTGC
CTAATCCTGAAAAAAATGGGGATTAGTATGAGTATTCAAGTTTGTCTTATTTAAGAGATAAACTT
TGATTTTATCAATAACGTTGGAAAGAAAAGCTTCTCTTGTGACACCAAAACATCAACGTCATGTA
TCCTAATGAAGGGAATGTATTTCTGGTTCCCAATCTTGGAAAGAATGGGGACTTTTACGAGAATC
AATGCATGACTCATCTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAGGATTTCC
ATGCAAAAGAAAAC
Found at i:169984 original size:20 final size:20
Alignment explanation
Indices: 169961--170033 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
169951 ACAATTCAAA
169961 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
169981 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGCAAT
170002 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
170022 GTATCGATACAT
1 GTATCGATACAT
170034 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:170004 original size:21 final size:21
Alignment explanation
Indices: 169978--170054 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
169968 TACATGTTGC
169978 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
169999 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
170019 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
170039 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
170055 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:170012 original size:41 final size:41
Alignment explanation
Indices: 169961--170054 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
169951 ACAATTCAAA
169961 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAAGAT
170002 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
170043 GTATCGATACAT
1 GTATCGATACAT
170055 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 6 0.12
41 46 0.88
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:170111 original size:13 final size:13
Alignment explanation
Indices: 170093--170118 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
170083 TACAGCAAGT
170093 ATGTATCGATACA
1 ATGTATCGATACA
170106 ATGTATCGATACA
1 ATGTATCGATACA
170119 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:170203 original size:20 final size:21
Alignment explanation
Indices: 170173--170211 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
170163 CTATATTTTC
170173 AAATATGTATCGATACATTAA
1 AAATATGTATCGATACATTAA
170194 AAAT-TGTATCGATACATT
1 AAATATGTATCGATACATT
170212 TACACGGGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (21 bp):
AAATATGTATCGATACATTAA
Found at i:174200 original size:15 final size:15
Alignment explanation
Indices: 174180--174210 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
174170 TAAAAATGTC
*
174180 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
174195 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
174210 C
1 C
174211 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:176296 original size:13 final size:13
Alignment explanation
Indices: 176278--176316 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
176268 ACATTTTTCC
176278 TTGTATCGATACA
1 TTGTATCGATACA
176291 TTGTATCGATACA
1 TTGTATCGATACA
*
176304 CTGTATCGATACA
1 TTGTATCGATACA
176317 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:178781 original size:20 final size:20
Alignment explanation
Indices: 178758--178830 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
178748 ACAATTCAAA
178758 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
178778 GTATCGATACATGAAAAAAAT
1 GTATCGATACATG-TTGCAAT
178799 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
178819 GTATCGATACAT
1 GTATCGATACAT
178831 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:178801 original size:21 final size:21
Alignment explanation
Indices: 178775--178851 Score: 95
Period size: 21 Copynumber: 3.7 Consensus size: 21
178765 TACATGTTGC
178775 AATGTATCGATACATGAAAAA
1 AATGTATCGATACATGAAAAA
****
178796 AATGTATCGATACATG-TTGC
1 AATGTATCGATACATGAAAAA
178816 AATGTATCGATACAT-AAAAA
1 AATGTATCGATACATGAAAAA
178836 AGATGTATCGATACAT
1 A-ATGTATCGATACAT
178852 TTCTTGGCAG
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.44, C:0.12, G:0.16, T:0.29
Consensus pattern (21 bp):
AATGTATCGATACATGAAAAA
Found at i:178809 original size:41 final size:41
Alignment explanation
Indices: 178758--178851 Score: 172
Period size: 41 Copynumber: 2.3 Consensus size: 41
178748 ACAATTCAAA
178758 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAA-AT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAAGAT
178799 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
178840 GTATCGATACAT
1 GTATCGATACAT
178852 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 6 0.12
41 46 0.88
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:178908 original size:13 final size:13
Alignment explanation
Indices: 178890--178915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
178880 TACAGCAAGT
178890 ATGTATCGATACA
1 ATGTATCGATACA
178903 ATGTATCGATACA
1 ATGTATCGATACA
178916 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:184698 original size:42 final size:42
Alignment explanation
Indices: 184643--184761 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
184633 TTCTTCTCTC
* *
184643 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCATGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCATGTCT
* *
184685 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCATGTCT
* *
184727 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
184762 TTGAGCTACT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCATGTCT
Found at i:186764 original size:159 final size:158
Alignment explanation
Indices: 186522--187664 Score: 493
Period size: 159 Copynumber: 7.2 Consensus size: 158
186512 TACAATAATT
* * * * * *
186522 GGTAGGAAG-AAAGCATTTCTTGCGAAACCAAAGCATCAATATCATGTATCATTATTAGAA-GAC
1 GGTAGAAAGAAAAGC-TTTCTTGCGACACCAAAGCACCAATATCATGTATC-CTA-AAGAAGGAA
* * *
186585 TATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTCTCTTATT
63 TGTGTTTATGGTGCCCAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTCTCTCATT
*
186650 TAAAAG-ATAAACTTTGATTCTATCAATAAC
128 TAAAAGCACAAACTTTGATTCTATCAATAAC
*
186680 GGTAGAAAGAAAAGCTTCTCTTGCGACACCAAAGCACCAATGTCATGTATCCTAAAGAAAGGAAT
1 GGTAGAAAGAAAAGCTT-TCTTGCGACACCAAAGCACCAATATCATGTATCCTAAAG-AAGGAAT
* * * * * * * * * ** *
186745 GTGTTTTTTGTTCCCAATCCTGAAAAGACTG-GACACTT-TTACGAG-AATCAATGCATGTCTCA
64 GTGTTTATGGTGCCCAATCCAGAAAAGAATGTG-GA-TTAGTATGAGTATTC-ATGTTTCTCTCA
* * * * **
186807 -TTCAAAGTACAAACTTTTATTTTAAGGAAAATAA-
126 TTTAAAAGCACAAACTTTGATTCT-A--TCAATAAC
* * * * ** * ** * * *
186841 GG--CAAAGAAAAGATTTGCATGC-AAAAGAAATCCATAAATATCATTTATCCTAATGAGGAGAA
1 GGTAGAAAGAAAAGCTTT-CTTGCGACACCAAA-GCACCAATATCATGTATCCTAAAGAAG-GAA
* * * ** *** * * *
186903 TGTGTTTATAGTGCCTAATCGCA-AAATGAATGAAGATCCTTACT-AGAATCCATGTTTGTCTCA
63 TGTGTTTATGGTGCCCAATC-CAGAAAAGAATGTGGATTAGTA-TGAGTATTCATGTTTCTCTCA
* * * * * *
186966 TTT-GAGGCACGAACTTAGAATT-TA-CAAAAATT
126 TTTAAAAGCACAAACTTTG-ATTCTATCAATAA-C
* * * * *
186998 GGTAGGAAG-AAAGCATTTCTTGCGA-ACCAAAGCATCAATATCATGTATCATTATTAGAA-GAC
1 GGTAGAAAGAAAAGC-TTTCTTGCGACACCAAAGCACCAATATCATGTATC-CTA-AAGAAGGAA
* * * *
187060 TATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTTTTCATGTTTCTCTTATT
63 TGTGTTTATGGTGCCCAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTCTCTCATT
187125 TAAAAG-ACAAACTTTGATTCTATCAATAAC
128 TAAAAGCACAAACTTTGATTCTATCAATAAC
* *
187155 GGTAGAAAGAAAAGCTTCTCTTGCTACACCAAAGCACCAATGTCATGTATCCTAAAGAAAGGAAT
1 GGTAGAAAGAAAAGCTT-TCTTGCGACACCAAAGCACCAATATCATGTATCCTAAAG-AAGGAAT
* * * * * * * * ** *
187220 GTGTTTTTGGTTCCCAATCCTGAAAAGACTG-GACACTT-TTACGAG-AATCAATGCATGTCTCA
64 GTGTTTATGGTGCCCAATCCAGAAAAGAATGTG-GA-TTAGTATGAGTATTC-ATGTTTCTCTCA
* * * **
187282 TTT-AAAGTACAAACTTTTATTTTAAGGAAAATAA-
126 TTTAAAAGCACAAACTTTGATTCT-A--TCAATAAC
* * * * ** * ** * * *
187316 GG--CAAAGAAAAGATTTCCATGC-AAAAAAAATCCATAAATATCATTTATCCTAATGAGGAGAA
1 GGTAGAAAGAAAAGCTTT-CTTGCGACACCAAA-GCACCAATATCATGTATCCTAAAGAAG-GAA
* * * ** *** * * * *
187378 TGTGTTTATAGTGCCTAATCGCA-AAATGAATGAAGATCCTTATTAGAATCCATGTTTGTCTCAT
63 TGTGTTTATGGTGCCCAATC-CAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTCTCTCAT
* * * * * *
187442 TT-GACGCACGAACTTAGAATT-TA-CAAAAATT
127 TTAAAAGCACAAACTTTG-ATTCTATCAATAA-C
* * * * * * *
187473 GGTGGGAAG-AAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA-GAC
1 GGTAGAAAGAAAAG-CTTTCTTGCGACACCAAAGCACCAATATCATGTATCC-TA-AAGAAGGAA
* * * *
187536 TATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATTAGTATTCATGTTTCTCTTATT
63 TGTGTTTATGGTGCCCAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTCTCTCATT
** * *
187601 TATGAG-ATAAACTTTGATTCTATCAATAAT
128 TAAAAGCACAAACTTTGATTCTATCAATAAC
* * *
187631 GGTGGAAGGAAAAGCTTCTCTTGTGACACCAAAG
1 GGTAGAAAGAAAAGCTT-TCTTGCGACACCAAAG
187665 TGTCAATGTC
Statistics
Matches: 720, Mismatches: 197, Indels: 135
0.68 0.19 0.13
Matches are distributed among these distances:
155 8 0.01
156 6 0.01
157 98 0.14
158 184 0.26
159 388 0.54
160 22 0.03
161 4 0.01
162 10 0.01
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (158 bp):
GGTAGAAAGAAAAGCTTTCTTGCGACACCAAAGCACCAATATCATGTATCCTAAAGAAGGAATGT
GTTTATGGTGCCCAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATGTTTCTCTCATTTAA
AAGCACAAACTTTGATTCTATCAATAAC
Found at i:187258 original size:475 final size:476
Alignment explanation
Indices: 186367--187685 Score: 2338
Period size: 475 Copynumber: 2.8 Consensus size: 476
186357 GTTTTCATTA
* * *
186367 CAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATGTCATTTATCCTAATGAGGAGAATGTGT
1 CAAAGAAAAGATTTCCATGCAAAAGAAATCCATAAATATCATTTATCCTAATGAGGAGAATGTGT
* *
186432 TTATAGTGCCTAATC-AAGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTTATTTGAG
66 TTATAGTGCCTAATCGCA-AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAG
*
186496 GCACGAACTTAGAATTTACAATAATTGGTAGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAA
130 GCACGAACTTAGAATTTACAAAAATTGGTAGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAA
186561 TATCATGTATCATTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGT
195 TATCATGTATCATTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGT
186626 ATGAGTATTCATGTTTCTCTTATTTAAAAGATAAACTTTGATTCTATCAATAACGGTAGAAAGAA
260 ATGAGTATTCATGTTTCTCTTATTTAAAAGATAAACTTTGATTCTATCAATAACGGTAGAAAGAA
* *
186691 AAGCTTCTCTTGCGACACCAAAGCACCAATGTCATGTATCCTAAAGAAAGGAATGTGTTTTTTGT
325 AAGCTTCTCTTGCTACACCAAAGCACCAATGTCATGTATCCTAAAGAAAGGAATGTGTTTTTGGT
186756 TCCCAATCCTGAAAAGACTGGACACTTTTACGAGAATCAATGCATGTCTCATTCAAAGTACAAAC
390 TCCCAATCCTGAAAAGACTGGACACTTTTACGAGAATCAATGCATGTCTCATTCAAAGTACAAAC
186821 TTTTATTTTAAGGAAAATAAGG
455 TTTTATTTTAAGGAAAATAAGG
*
186843 CAAAGAAAAGATTTGCATGCAAAAGAAATCCATAAATATCATTTATCCTAATGAGGAGAATGTGT
1 CAAAGAAAAGATTTCCATGCAAAAGAAATCCATAAATATCATTTATCCTAATGAGGAGAATGTGT
186908 TTATAGTGCCTAATCGCAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG
66 TTATAGTGCCTAATCGCAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG
186973 CACGAACTTAGAATTTACAAAAATTGGTAGGAAGAAAGCATTTCTTGCG-AACCAAAGCATCAAT
131 CACGAACTTAGAATTTACAAAAATTGGTAGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAAT
187037 ATCATGTATCATTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTA
196 ATCATGTATCATTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTA
* *
187102 TGAGTTTTCATGTTTCTCTTATTTAAAAGACAAACTTTGATTCTATCAATAACGGTAGAAAGAAA
261 TGAGTATTCATGTTTCTCTTATTTAAAAGATAAACTTTGATTCTATCAATAACGGTAGAAAGAAA
187167 AGCTTCTCTTGCTACACCAAAGCACCAATGTCATGTATCCTAAAGAAAGGAATGTGTTTTTGGTT
326 AGCTTCTCTTGCTACACCAAAGCACCAATGTCATGTATCCTAAAGAAAGGAATGTGTTTTTGGTT
*
187232 CCCAATCCTGAAAAGACTGGACACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACT
391 CCCAATCCTGAAAAGACTGGACACTTTTACGAGAATCAATGCATGTCTCATTCAAAGTACAAACT
187297 TTTATTTTAAGGAAAATAAGG
456 TTTATTTTAAGGAAAATAAGG
*
187318 CAAAGAAAAGATTTCCATGCAAAAAAAATCCATAAATATCATTTATCCTAATGAGGAGAATGTGT
1 CAAAGAAAAGATTTCCATGCAAAAGAAATCCATAAATATCATTTATCCTAATGAGGAGAATGTGT
* *
187383 TTATAGTGCCTAATCGCAAAATGAATGAAGATCCTTATTAGAATCCATGTTTGTCTCATTTGACG
66 TTATAGTGCCTAATCGCAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG
* **
187448 CACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAAT
131 CACGAACTTAGAATTTACAAAAATTGGTAGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAAT
*
187513 ATCATGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTA
196 ATCATGTATCATTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTA
* ** * * *
187578 TTAGTATTCATGTTTCTCTTATTTATGAGATAAACTTTGATTCTATCAATAATGGTGGAAGGAAA
261 TGAGTATTCATGTTTCTCTTATTTAAAAGATAAACTTTGATTCTATCAATAACGGTAGAAAGAAA
*** *
187643 AGCTTCTCTTG-TGACACCAAAGTGTCAATGTCTTGTATCCTAA
326 AGCTTCTCTTGCT-ACACCAAAGCACCAATGTCATGTATCCTAA
187686 TAAAGAATGG
Statistics
Matches: 808, Mismatches: 32, Indels: 6
0.96 0.04 0.01
Matches are distributed among these distances:
475 464 0.57
476 343 0.42
477 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.31
Consensus pattern (476 bp):
CAAAGAAAAGATTTCCATGCAAAAGAAATCCATAAATATCATTTATCCTAATGAGGAGAATGTGT
TTATAGTGCCTAATCGCAAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGG
CACGAACTTAGAATTTACAAAAATTGGTAGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAAT
ATCATGTATCATTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTA
TGAGTATTCATGTTTCTCTTATTTAAAAGATAAACTTTGATTCTATCAATAACGGTAGAAAGAAA
AGCTTCTCTTGCTACACCAAAGCACCAATGTCATGTATCCTAAAGAAAGGAATGTGTTTTTGGTT
CCCAATCCTGAAAAGACTGGACACTTTTACGAGAATCAATGCATGTCTCATTCAAAGTACAAACT
TTTATTTTAAGGAAAATAAGG
Found at i:189180 original size:474 final size:476
Alignment explanation
Indices: 187687--195427 Score: 10437
Period size: 475 Copynumber: 16.3 Consensus size: 476
187677 GTATCCTAAT
*
187687 AAAGAATGGA-ACATTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
** * *
187751 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGCATCCTGAGGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* *
187816 GAGAATGTGTTTATAGTGCCTAATCCTGAAATGAATGATGATCCTTACTAGAATCCATGTTTGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * * * * *
187881 TTATTTGAGGCACGAACATAGAATCTACAAAAATT-GTGGGAA-AAAGGTGTTTCTAGCAAAACC
196 TCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAA-GCGTTTCTTGCGAAACC
* * * * * *
187944 AAATCATCAATATGC-TGTATCCGTATAAGAAGACTATATTTATGGTGCCGAATGTCATGTATCA
260 AAAGCATCAATAT-CATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA--TCCTG-A--A
* * ** * * * *
188008 AACTTACT--ATATTAGTAAGAGTATTCAAGTTT-TCCTTATTTAAGAGACAAACTTTCATTTTA
319 AA--GAATGGGGATTAGTATGAGTATTCATGTTTGT-CTTATTTAAGAGACAAACTTTGATTCTA
* * * *
188070 TCAATGACGTTGGAAAGAAAGGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
381 TCAATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATA
* *
188135 AAGGGAATGTGTTTTTGGTTCCCAATCTCAGA
446 AAAGGAATGTGTTTTTGGTTCCCAATCT-TGA
* * *
188167 AATAG--TGGAGACTTTTATGAGAATCTATGCTTGTCTCATTTAAAGTACAAACTTTGATTTTAA
1 AA-AGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* * * * *
188230 GGAAAGTGAGGCAAAGAAAAGATTTCCAGGCAAAAGAAAACCATCAATATCATTTATCTTATTG-
65 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* *
188294 GCGAGAAAGTGTTTATAGTGCCT-ATCATGAAATGAATGAAGATCCTTACTAGAATCCATCTTTG
130 G-GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
* * ** * * * * *
188358 TCTCGTTTGAGGAATGAACTTATACGTTGCAAAAATTGGAGGGAGGAAAGCATTTCTTACGAAAC
194 TCTCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * * *
188423 CAAAGCATCGATAACATGTTTCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAA
259 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * * *
188488 AGTGGATTAGTATGACTATTCATGTTTGTCTTATTTACGAGACAAACTTTGATTCTATCAATAAC
324 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
* * *
188553 GATGGAAAGACAAGCTTCTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAAT
389 GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAAT
*
188618 GTGTTTTTGGTTCTCAATCTTGA
454 GTGTTTTTGGTTCCCAATCTTGA
* *
188641 AAAGAATGGAGACTTTTACGAGAATCAACGCATGTCTCATTTAAAATACAAACTTTGATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* *
188706 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAGCCATCAATATCATTTATCCTAAAGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * * * * *
188771 GAGAATGCGTTTAT-GATACCCAATCATGAAATGAATGAAGATCCCTACAAGGATCCATGTTTGT
131 GAGAATGTGTTTATAG-TGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * *
188835 CTCATTTGA-GCAATGAACTCATACTTTACACAAATTGGTGGGAA-AAAGCGTATCTTGCGAAAC
195 CTCATTTGAGGC-ATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
** * *
188898 CAAAGCATCAATATCACATATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAA
259 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * *
188963 TAGGGATTAGTAAGAGTATTCAGGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAAC
324 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
* * * * *
189027 GGTCGAAAAAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAAGGAAT
389 GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAAT
**
189092 GTGTTTTTGGTTCTTAATCTTGA
454 GTGTTTTTGGTTCCCAATCTTGA
* *
189115 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTTATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
*
189180 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCGTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* ** * * * * * * *
189245 GACAATGTGTTTATAGCACCCAATCACGAATTGAACGAAGATCCCTACAAGGATCCATGTTTGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
189310 TCATTTGA-GCAATGAACTCATACTTTACACAAATTGGTGGGAAGAAAGCGTATCTTGCAAAACC
196 TCATTTGAGGC-ATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
** * * * * *
189374 AAAGCATCAATATCACATATCCTTATCAGAAGACTATGTTTATAGTGCTTAACCCTGAAAAAAAT
260 AAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT
* * * ** * *
189439 GGGGATTAGAATGAGTATTGAAGTTTGTCTTATTTTGGAGAC-AACTTCGATTCTATCAATCACG
325 GGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACG
* * **
189503 GGGGAAAGAAAAGCTTTTCTTGCGATGCCAAAGCATCAATGTCATGTAT-CTAATAAAAGGAATG
390 GTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATG
**
189567 TGTTTTTCATTCCCAATCTTGA
455 TGTTTTTGGTTCCCAATCTTGA
** * *
189589 CTAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAT
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
**
189654 GAAAATAATTCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* *
189719 GAGAATGTGTTTATCGTGCCTAATCATGAAATGAATGAAGATCCTTACAAGAATCCATGTTTGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
189784 TCATTTGAGGCATGAACTTAGAATTTACGAAAATTGGTGGGAAGAACGTGTTTCTTGCAAAACCA
196 TCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* * * *
189849 AAGCATCAGTATCATGTATCCTTATGAGAAGCCTATGTTTATAGTGCCTAATCCTAAAAAGAATG
261 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
*
189914 GGGATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAATAACGG
326 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGG
* * * * *
189979 GGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGC
391 TGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGT
* *
190044 ATTTTCGGTTCCCAATCTT-A
456 GTTTTTGGTTCCCAATCTTGA
* * *
190064 AAACGAGTGGAGACTTTTACAAGAATCAATGCATGTCTCATATAAAGTACAAACTTTGATTTTAA
1 AAA-GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* * * * *
190129 GGAAAATAAGGCAAAGAAAAGATTTTCATGCAAACGAAAACCATCAATATCATGTATCCTGATAA
65 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
*
190194 GGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCTTGTTTGT
130 GGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * *
190259 CTCATTTGAGGCACGAACTTAAAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGTGAAACC
195 CTCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* * * * *
190324 AAAGCATTAATATCATGCATCCTTATTAGAAGACTATGTGTATGGTGCCTAAT-CTAGAAAAAAA
260 AAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAA
* *
190388 TGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAAC
324 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
* *
190452 GGTGGAAAGAAAAGGTTCTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAATAAAAGGAAT
389 GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAAT
*
190517 GTGTTTTTGGTTCCCAATCCTGA
454 GTGTTTTTGGTTCCCAATCTTGA
* * * *
190540 AAAGAATAGAGAATTTTACAAGAATCAATGCATGTCTTATTTAAAGTACAAACTTTGATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* *
190605 GAAAATAAGGCAATGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATAAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * *
190670 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * * * * * * *
190735 TTATCTGA-GCAAAGAACTCATACTTTACAAAAATTGTTAGGAAGCAAGCGTATCTTACGAAACC
196 TCATTTGAGGC-ATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* * * * *
190799 GAAGCATCAATATCATGTATCCTTATCAGAAGACTATGTTTATAGTGCCTAA-CCTTCAAAAAAA
260 AAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-TGAAAAGAA
* * * * * *
190863 TGGGGATTAGAATCAGTATTGAAGTTTGTCTTA-TTATGGAGAC-AACTTTGATTCTATCAATTA
324 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTA-AGAGACAAACTTTGATTCTATCAATAA
* * *
190926 CGGTGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCTTCAATGTCATGTAT-CTAATAAAAGGAA
388 CGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAA
190990 TGTGTTTTTGGTTCCCAATCTTGA
453 TGTGTTTTTGGTTCCCAATCTTGA
*
191014 AAAGAATGGAGACTTTTACAAGAATCAATAG-ATGTCTCATTTAAAGTACAAACTTTGATTTTAA
1 AAAGAATGGAGACTTTTACGAGAATCAAT-GCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
* * * *
191078 GGAAAATAAGGCAAAGAAAAGATTTTCACGCAAAAGAAAACCATCAATATCTTTTATCCTAAAGA
65 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* * * * * *
191143 GAAGTATGTGTTTATAGTGCCAAATCACGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGT
130 GGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * * *
191208 CTCATTTGA-GCAATGAACTCATACTTTACACAAATTGGTGGGAA-AAAGCGTATCTTGCGAAAC
195 CTCATTTGAGGC-ATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
** * *
191271 CAAAGCATCAATATCACATATCCTTATGAGAAGACAATGTTTATGGTGCCTAATCTTGAAAAGAA
259 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
* * *
191336 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTGTCAACAAC
324 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
* * *
191400 GGTGGATAGAAAAGCTTCTCTTGCGACACCAGAGCATCAATGTCATGTATCCTAATGAAAGGAAT
389 GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAAT
* *
191465 GTGTTTCTGGTTCTCAATCTTGA
454 GTGTTTTTGGTTCCCAATCTTGA
* *
191488 AAGGAATGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * *
191553 GAAAATAAAGCAAA-AAAGAGATTTTCTTGCAAAAGAAAACCATCAATATCATTCATCCTAATGA
66 GAAAATAAGGCAAAGAAA-AGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* * ** *
191617 GGAGAATGTGTTTATAGTGCCCAATCATGAAATGAATAAAGATCCTTACCGGAATCCATGCTTGT
130 GGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
** * * *
191682 CTCATTTGAGGCACAAACTTAGAATTTACGAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACC
195 CTCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* * * * * **
191747 AAAGCATCAATATCATGTATCCTTATTGGGCCTAATCCAATAAGTTTATAGTGCCTAATCCAAAA
260 AAAGCATCAATATCATGTATCCTTA-TGAG---AA--GACTATGTTTATGGTGCCTAATCCTGAA
*
191812 AAGAATGTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
319 AAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* *
191877 ATAACGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAACA
384 ATAACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAA
191942 GGAATGTGTTTTTGGTTCCCAATCTTGA
449 GGAATGTGTTTTTGGTTCCCAATCTTGA
* * *
191970 AAAGAATGGTGACTTTTACAAGAATCAATGCATGTCTCATTTAATGTACAAACTTTGATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * *
192035 GAAAATTAGGCAATGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * *
192100 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGACGATCCTTACTGGAATCCATGCTTGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
192165 TCATTTGAAGCATGAACTTATACTTTACAAAAATAGGTAGGAAGAAAGCGTATCTTGCGAAACCA
196 TCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* * * *
192230 AAGCATCAATATCATGCATCCTTATGAGAAAACTATGTTCATGGTGCCTAATCCTGAAAACAATG
261 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
*
192295 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAACGG
326 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGG
* * *
192359 TGGAATGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATAACAGGAATGT
391 TGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGT
192424 GTTTTTGGTTCCCAATCTTGA
456 GTTTTTGGTTCCCAATCTTGA
* * * *
192445 AAATAATGGAGACTTTTACAAGAATCAACGCATGTCTCATTTAAAGTACAAACTTTGATTTTAGG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * *
192510 GAAAATTAGGTAATGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAACGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* *
192575 GAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATACATGTTTGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * * * * * *
192640 TTATCTGA-GCAATGAACTCATACTTTACAAAAATTGTTAGGAAGCAAGCGTATCTTACGAAACC
196 TCATTTGAGGC-ATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* * * *
192704 AAAGCATCAATATCATGTATCGTTATCAGAAGACTATGTTTATAGTGCCTAATCCT-AAAAGGAT
260 AAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA-GAA
*
192768 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAAC
324 TGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
* * * *
192832 GGTGGAATGAAAAGCTTCTCTTGTGACACCAAAGGATCAATGTCATGTATCCTAATAACAGGAAT
389 GGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAAT
* *
192897 GTGTCTTTGGTTCGCAATCTTGA
454 GTGTTTTTGGTTCCCAATCTTGA
* *
192920 AAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCCTTTAAAGTACAAACTTTGATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * * *
192985 GAAAATTAGGCGATGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAACGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* *
193050 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTGGAATCCATGCTTGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
193115 TCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGTGAAGCCA
196 TCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* * *
193180 AAGCATCAATATCATATATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATG
261 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
* * * *
193245 TGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTTTATCAATAATGG
326 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGG
* * * * *
193310 TGGAATGAAAAGCTTCTCTTGTGACAGCAAAGCATCAATGTCATGCATCCTAAAAAAAGGAATGT
391 TGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGT
* * *
193375 ATTCTTGGTTCCCAATGTT-A
456 GTTTTTGGTTCCCAATCTTGA
* * *
193395 GAAAGATTGGAGACTTTTACGAGAATCAATGCAAGTCTTATTTAAAGTACAAACTTTGATTTTAA
1 -AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
** *
193460 GGAAAACGAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTTATCCTAATG
65 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCA-TTTATCCTAATG
**
193525 AGGAGAATGTGTTTATAGTGCCTAATCATGAAAAAAATGAAGATCCTTACTAGAATCCATGTTTG
129 AGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTG
* * * * * * * *
193590 TCTTATTTGA-GCAATGAACTCATACTTTACAAAAATTGGTAGGAAGCAAGCGTATCTTACGAAG
194 TCTCATTTGAGGC-ATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAA
* * ** *
193654 CCAAAGCATCAATATCATGTATCTTTATCAGAAGACTATGTTTATAATGCCTAATCCTAAAAAGA
258 CCAAAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
*
193719 ATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAAGAGAC-AACTTTGATTCTATCAATAA
323 ATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAA
* * *
193783 CGGTGGAAAGAAAAGCTTCTCTTGTGATACCAAAGCATCAATGTCATGTATCCTAATAACAGGAA
388 CGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAA
193848 TGTGTTTTTGGTTCCCAATCTTGA
453 TGTGTTTTTGGTTCCCAATCTTGA
* * *
193872 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCACTTAAAGTACAAACATTGATTTTAAT
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
* * *
193937 GAAAATAAGGCAATGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTACCCTAATAAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * *
194002 GAGAATGTGTTTATAGTGCTTAATCAAGAAATGAATGAAGATCCTTACTAGAATCCATGTTCGTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* *
194067 TCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCA
196 TCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
* **
194132 AAGCATCAATATCATGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCAAAAAAGAATG
261 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
* *
194197 TGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGG
326 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGG
* * * * *
194262 TGGAATGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCAGGCATCCTAATAAAAGGAATAT
391 TGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGT
* *
194327 GTTATTGGTTCCCAATGTT-A
456 GTTTTTGGTTCCCAATCTTGA
*
194347 GAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAATGTACAAACTTTGATTTTAA
1 -AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAA
** * * *
194412 GGAAAACGAGGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCCTTTATCGTAATGA
65 GGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGA
* *
194477 GGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCGTGTTTCT
130 GGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGT
* * *
194542 CTCATTTGAGGCACGAACTTAGAATTTACAAAAATT-ATGGGAAGAAAGCGTTTCTTGCGAAACC
195 CTCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACC
* * * * * * *
194606 AAATCATCAATAACCTGTA-CCTGTAT-ACGATGGCTATGTTAATGGTGCCTAATCCTAAAAAGA
260 AAAGCATCAATATCATGTATCCT-TATGA-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
* * * * **
194669 AT-GGGATTAGTATGAGTATTCGA-GATTGCCTTATTTAAGAGACAAATTTTGATTTTATCGTTA
323 ATGGGGATTAGTATGAGTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATA
* * * * *
194732 ACGTTGGAAATAAAAGCCTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
387 ACGGTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGA
* * *
194797 ATGGGTTCTTGGCTCCCAATCTTGA
452 ATGTGTTTTTGGTTCCCAATCTTGA
* *
194822 GAAGAACGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
** * *
194887 GAAAACGAGGCAAGGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
66 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
* * *
194952 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATAAAGATCCTTACTAAAATCCATGTTTCTC
131 GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
* * * * *
195017 TCATTTGAGGCACGAATTTAGAATTTACAAAAATTGATGGGAAGAAAGCATTTCTTGCGAAACCA
196 TCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
** * * * * *
195082 AAGCATCAATATC-TGTATTGTTTTGAGAAGACTATGTTTATGGTGGCTAATACTAAAAAAAATG
261 AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
* * * * ** *
195146 GGGATTTGTACGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATTTTAAGAATATCGG
326 GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGG
* * * * *
195211 TGGAAAGAAAAGCTTCTCTTGTGACACTAAGGCATCAATGTCATGTATCCTAATGAAGGGAATGT
391 TGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGT
* * *
195276 GTTTTTGGTTCTCAATTTTTTA
456 GTTTTTGGTTCCCAA-TCTTGA
* * * * *
195298 AAA-AATGGAGA----T----GAATCAATGCTTG-CCCTATTGAAGGGACAAACTTTGATTTTAA
1 AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTC-ATTTAAAGTACAAACTTTGATTTTAA
* * * * * * * *
195353 GTAAAAT-AGGAAAAAGAAAAGATTTTCGTGCAAAAAAAAACCGTCAATAACATTTATGCTAATG
65 GGAAAATAAGG-CAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG
195417 AGGAGAATGTG
129 AGGAGAATGTG
195428 CAAAAAAAGA
Statistics
Matches: 6484, Mismatches: 710, Indels: 147
0.88 0.10 0.02
Matches are distributed among these distances:
466 5 0.00
467 97 0.01
471 1 0.00
473 176 0.03
474 1579 0.24
475 2476 0.38
476 1232 0.19
477 223 0.03
478 5 0.00
479 73 0.01
480 185 0.03
481 74 0.01
482 355 0.05
483 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
AAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAG
GAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAG
GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTC
TCATTTGAGGCATGAACTTATAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCA
AAGCATCAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGG
TGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGT
GTTTTTGGTTCCCAATCTTGA
Found at i:191470 original size:158 final size:157
Alignment explanation
Indices: 188026--195284 Score: 1706
Period size: 159 Copynumber: 45.8 Consensus size: 157
188016 ATATTAGTAA
* * * * ** *
188026 GAGTATTCAAGTTT-TCCTTATTTAAGAGACAAACTTTCATTTTATCAATGACGTTGGAAAGAAA
1 GAGTATTCATGTTTGT-CTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAA
* * * * * *
188090 GGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
63 AGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTG
* *
188155 CCCAATCTCAGAAATAG--TGGAGACTT-TTAT
128 CCTAATCT-TGAAA-AGAATGGAGA-TTATTAT
* * * * *
188185 GAG-AATCTATGCTTGTCTCATTTA-AAGTACAAACTTTGATT-TT-AAGGAAA-GTGAGGCAAA
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCAA--AAACG-GTGG--AA
* ** * ** * * * * ** *
188245 GAAAAGATT-TCCAGGCAAAAGAAAACCATCAATATCATTTATCTTATTG-GCGAGAAAGTGTTT
59 GAAAAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTT
* * * * **
188308 ATAGTGCCT-ATCATGAAATGAATGAAGATCCTTACT
122 ATGGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * ** ** * * * * *
188344 -AGAATCCATCTTTGTCTCGTTTGAGGA-ATGAAC-TT-ATACGTTGCAAAAATTGGAGGGAGGA
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACTTTGATTC-TT-CAAAAA-CGGTGGAAGAA
* * * * * * *
188405 AAGCATT-TCTTACGAAACCAAAGCATCGATAACATGTTTCCTTATGAGAA-GACTATGTTTATG
62 AAGC-TTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATG
** * *
188468 GTGCCTAATCCAGAAAAGAAAGTG-GATTAGTAT
125 GTGCCTAATCTTGAAAAGAATG-GAGATTATTAT
* * * * *
188501 GACTATTCATGTTTGTCTTATTTACGAGACAAACTTTGATTCTATCAATAACGATGGAAAGACAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAAA
* * *
188566 GCTTCTCTTGC-AACACCAAAGCATCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGT-
64 GCTTCTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTG
* *
188629 TCTCAATCTTGAAAAGAATGGAGACTT-TTAC
128 CCT-AATCTTGAAAAGAATGGAGA-TTATTAT
* * ** * ** * * * **
188660 GAG-AATCAACGCATGTCTCATTTAAAATACAAACTTTGATT-TTAAGGAAAATAAGG-CAAAGA
1 GAGTATTC-ATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTT---CAAAA-ACGGTGGAAGA
* * ** * * * *
188722 AAAGATT-TCCATGC-AAAAGAAAGCCATCAATATCATTTATCCTAAAG-AGGAGAATGCGTTTA
61 AAAGCTTCT-CTTGCGAAACCAAAG-CATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTA
* * * * * * *** *
188784 TGATACCCAATCATGAAATGAATGAAGATCCCTAC
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * * ** * * ** *
188819 AAGGATCCATGTTTGTCTCATTTGAGCA-ATGAACTCAT-ACTT-TACACAAATTGGTGGGA-AA
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACT-TTGA-TTCTTCA-AAAACGGTGGAAGAA
* * ** * *
188880 AAGCGTATCTTGCGAAACCAAAGCATCAATATCACATATCCTTATGAGAA-GACA-ATGTTTATG
62 AAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGA-ATGTGTTTATG
* *
188943 GTGCCTAATCTTGAAAAGAATAGG-GATTAGTAA
125 GTGCCTAATCTTGAAAAGAAT-GGAGATTATTAT
* * * * *
188976 GAGTATTCAGGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAACGGTCGAAAAAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGT-GGAAGAAAA
* * * * * *
189040 GCTTCTCTTGTGACACCAAAGCATCAATGTCATGCATCCTAATGAAAGGAATGTGTTTTTGGTTC
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGC
* *
189105 TTAATCTTGAAAAGAATGGAGACTT-TTAC
129 CTAATCTTGAAAAGAATGGAGA-TTATTAT
* ** * ** * * * * **
189134 GAG-AATCAATGCATGTCTCATTTAAAATACAAACTTTTATT-TTAAGGAAAATAAGG-CAAAGA
1 GAGTATTC-ATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTT---CAAAA-ACGGTGGAAGA
* * * ** * * *
189196 AAAGATT-TCCATGCAAAAGAAAACCATCAATATCATTTATCGTAATG--AGGACAATGTGTTTA
61 AAAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGG--AATGTGTTTA
* ** * ** ** * * *** *
189258 TAGCACCCAATCACGAATTGAACGAAGATCCCTAC
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * * ** * * **
189293 AAGGATCCATGTTTGTCTCATTTGAGCA-ATGAACTCAT-ACTT-TACACAAATTGGTGGGAAG-
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACT-TTGA-TTCTTCA-AAAACGGT-GGAAGA
* * * ** * * * * *
189354 AAAGCGTATCTTGCAAAACCAAAGCATCAATATCACATATCCTTATCAGAA-GACTATGTTTATA
61 AAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATG
* * * * * **
189418 GTGCTTAACCCTGAAAAAAATGGGGATTAGAAT
125 GTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * ** *
189451 GAGTATTGAAGTTTGTCTTATTTTGGAGAC-AACTTCGATTCTATCAATCACGGGGGAAAGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAAA
* ** * * * ** *
189515 GCTTTTCTTGCGATGCCAAAGCATCAATGTCATGTAT-CTAATAAAAGGAATGTGTTTTTCATTC
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGC
* ** *
189579 CCAATCTTGACTAGAATGGAGACTT-TTAC
129 CTAATCTTGAAAAGAATGGAGA-TTATTAT
* ** * ** * * *** **
189608 GAG-AATCAATGCATGTCTCATTTAAAATACAAACTTTGATT-TTAATGAAAATAATTCAAAGAA
1 GAGTATTC-ATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTTCA--AAAA-CGGTGGAAGAA
* * * ** * * * *
189671 AAGATT-TCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATC
62 AAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTATG
* * * ** *
189734 GTGCCTAATCATGAAATGAATGAAGATCCTTAC
125 GTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * * * * **
189767 AAGAATCCATGTTTGTCTCATTT--GAGGCATGAACTTAGAATT-TACGAAAATTGGTGGGAAG-
1 GAGTATTCATGTTTGTCTTATTTAGGAGACA--AACTTTG-ATTCTTC-AAAAACGGT-GGAAGA
* * * * * ** *
189828 AACG-TGTTTCTTGCAAAACCAAAGCATCAGTATCATGTATCCTTATGAGAA-GCCTATGTTTAT
61 AAAGCT-TCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTAT
* * * * *
189891 AGTGCCTAATCCTAAAAAGAATGGGGATTAGTAT
124 GGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * *
189925 GAGTATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAATAACGGGGGAAAGACAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAAA
* * * ** *
189990 GCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGCATTT-TCGGTT
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTAT-GGTG
* * *
190054 CCCAATCTT-AAAACGAGTGGAGACTT-TTAC
128 CCTAATCTTGAAAA-GAATGGAGA-TTATTAT
* * ** * * * * * **
190084 AAG-AATCAATGCATGTCTCATATA-AAGTACAAACTTTGATT-TTAAGGAAAATAAGG-CAAAG
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTT---CAAAA-ACGGTGGAAG
* * * * * * *
190145 AAAAGATTTTCATGC-AAACGAAAACCATCAATATCATGTATCCTGAT-AAGGAGAATGTGTTTA
60 AAAAGCTTCTCTTGCGAAAC-CAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTA
* * * * **
190208 TAGTGCCTAATCATGAAATGAATGAAGATCCTTACT
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * * * * ** * *
190244 -AGAATCCTTGTTTGTCTCATTTGAGG-CACGAACTTAAAATT-TACAAAAATTGGTGGGAAG-A
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACTT-TGATTCTTCAAAAA-CGGT-GGAAGAA
* * * * * * * * *
190305 AAG-TGTTTCTTGTGAAACCAAAGCATTAATATCATGCATCCTTATTAGAA-GACTATGTGTATG
62 AAGCT-TCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATG
* * *
190368 GTGCCTAATCTAGAAAAAAATGTG-GATTAGTAT
125 GTGCCTAATCTTGAAAAGAATG-GAGATTATTAT
*
190401 GAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAAA
* * * * * * *
190465 GGTTCTCTTGCGACACCAAGGCATCAATGTCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTC
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGC
* * * *
190530 CCAATCCTGAAAAGAATAGAGAATT-TTAC
129 CTAATCTTGAAAAGAATGGAG-ATTATTAT
* * ** * * ** *
190559 AAG-AATCAATGCATGTCTTATTTA-AAGTACAAACTTTGATT-TTAAGGAAAATAAG-GCAATG
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCA--AAAA-CGGTGGAA-G
* * * ** * * *
190620 AAAAGATT-TCCATGCAAAAGAAAACCATCAATATCATTTATCCTAAT-AAGGAGAATGTGTTTA
60 AAAAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTA
* ** * * *** *
190683 TAGTGCCTAATCACGAAATGAATGAAGATCCCTAC
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * * * * * *
190718 AAGAATCCATGTTTGTCTTATCT--GAGCAAAGAACTCAT-ACTT-TACAAAAATTGTTAGGAAG
1 GAGTATTCATGTTTGTCTTATTTAGGAG-ACA-AACT-TTGA-TTCTTCAAAAA-CGGT-GGAAG
* * * * * * * * *
190779 -CAAGCGTATCTTACGAAACCGAAGCATCAATATCATGTATCCTTATCAGAA-GACTATGTTTAT
60 AAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTAT
* * * * * **
190842 AGTGCCTAACCTTCAAAAAAATGGGGATTAGAAT
124 GGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * **
190876 CAGTATTGAAGTTTGTCTTA-TTATGGAGAC-AACTTTGATTCTATCAATTACGGTGGAAAGAAA
1 GAGTATTCATGTTTGTCTTATTTA-GGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAA
* * * * * * *
190939 AGCTTTTCTTGCGATACCAAAGCTTCAATGTCATGTAT-CTAATAAAAGGAATGTGTTTTTGGTT
63 AGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTG
* *
191003 CCCAATCTTGAAAAGAATGGAGACTT-TTAC
128 CCTAATCTTGAAAAGAATGGAGA-TTATTAT
* * * * * * * **
191033 AAG-AATCAATAG-ATGTCTCATTTA-AAGTACAAACTTTGATT-TTAAGGAAAATAAGG-CAAA
1 GAGTATTC-AT-GTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTT---CAAAA-ACGGTGGAA
* * ** * ** * * * * *
191093 GAAAAGATTTTCACGCAAAAGAAAACCATCAATATCTTTTATCCTAAAGAGAA-GTATGTGTTTA
59 GAAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTA
* * ** * * *** *
191157 TAGTGCCAAATCACGAAATGAATGAAGATCCCTAC
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * * ** * * ** *
191192 AAGAATCCATGTTTGTCTCATTTGAGCA-ATGAACTCAT-ACTT-TACACAAATTGGTGGGA-AA
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACT-TTGA-TTCTTCA-AAAACGGTGGAAGAA
* * ** * *
191253 AAGCGTATCTTGCGAAACCAAAGCATCAATATCACATATCCTTATGAGAA-GACA-ATGTTTATG
62 AAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGA-ATGTGTTTATG
* *
191316 GTGCCTAATCTTGAAAAGAATGGGGATTAGTAT
125 GTGCCTAATCTTGAAAAGAATGGAGATTATTAT
*
191349 GAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTGTCAACAACGGTGGATAGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGGA-AGAAAA
* * * * *
191413 GCTTCTCTTGCGACACCAGAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTCTGGT-T
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGC
*
191477 CTCAATCTTGAAAGGAATGGAGACTT-TTAT
129 CT-AATCTTGAAAAGAATGGAGA-TTATTAT
* ** * * * **** * *
191507 GAG-AATCAATGCATGTCTCATTTA-AAGTACAAACTTTGATT-TTAAGGAAAATAAAGCAAAAA
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCA--AAAACGGTGGAAGAA
* * * ** * *
191569 AGAGATTTTCTTGCAAAAGAAAACCATCAATATCAT-TCATCCTAATG-AGGAGAATGTGTTTAT
62 A-AGCTTCTCTTGCGAAACCAAAGCATCAATATCATGT-ATCCTAATGAAAG-GAATGTGTTTAT
* * * * ** ** *
191632 AGTGCCCAATCATGAAATGAATAAAGATCCTTACC
124 GGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * * * * * **
191667 G-GAATCCATGCTTGTCTCATTTGAGG-CACAAACTTAGAATT-TACGAAAATTGGTGGGAAG-A
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACTTTG-ATTCTTC-AAAAACGGT-GGAAGAA
* * *** **
191728 AAG-TGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTGGGCCTAATCCAATAAGT
62 AAGCT-TCTCTTGCGAAACCAAAGCATCAATATCATGTATCC-TAAT--G---AAAGGAATGTGT
* *** *
191792 TTATAGTGCCTAATCCAAAAAAGAATGTG-GATTAGTAT
120 TTATGGTGCCTAATCTTGAAAAGAATG-GAGATTATTAT
* *
191830 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAAA
* * * * *
191895 GCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAT-AACAGGAATGTGTTTTTGGTT
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA-AGGAATGTGTTTATGGTG
* * *
191959 CCCAATCTTGAAAAGAATGGTGACTT-TTAC
128 CCTAATCTTGAAAAGAATGGAGA-TTATTAT
* * ** * **
191989 AAG-AATCAATGCATGTCTCATTTA--ATGTACAAACTTTGATT-TT-AAGGAAA-ATTAGGCAA
1 GAGTATTC-ATGTTTGTCTTATTTAGGA-G-ACAAACTTTGATTCTTCAA--AAACGGT-GG-AA
* * * * ** * * *
192048 TGAAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTT
59 -GAAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTT
* * * **
192112 ATAGTGCCTAATCATGAAATGAAT-GACGATCCTTACT
122 ATGGTGCCTAATCTTGAAAAGAATGGA-GATTATTA-T
* * * * * * *
192149 G-GAATCCATGCTTGTCTCATTT-GAAG-CATGAACTTAT-ACTT-TACAAAAATAGGTAGGAAG
1 GAGTATTCATGTTTGTCTTATTTAGGAGACA--AACTT-TGA-TTCTTCAAAAA-CGGT-GGAAG
* * * * * *
192209 -AAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGCATCCTTATGAGAA--AACTATGTTCA
60 AAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAA-TGTGTTTA
* * * *
192271 TGGTGCCTAATCCTGAAAACAATGGGGATTAGTAT
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
*
192306 GAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAACGGTGGAATGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGGAA-GAAAA
* * * * *
192370 GCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAAT-AACAGGAATGTGTTTTTGGTT
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA-AGGAATGTGTTTATGGTG
* * *
192434 CCCAATCTTGAAAATAATGGAGACTT-TTAC
128 CCTAATCTTGAAAAGAATGGAGA-TTATTAT
* * * ** * * *
192464 AAG-AATCAACGCATGTCTCATTTA-AAGTACAAACTTTGATT-TT-AGGGAAAA--TTAGGTAA
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCA---AAAACGGT-GG-AA
* * * ** * * * *
192523 TGAAAAGATT-TCCATGCAAAAGAAAACCATCAATATCATTTATCCTAACG-AGGAGAATGTGTT
59 -GAAAAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTT
* ** * * **
192586 TATAGTGCCTAATCACGAAATGAATGAAGATCCTTACT
121 TATGGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * * ** * * * *
192624 -AGAATACATGTTTGTCTTATCTGAGCA-ATGAACTCAT-ACTT-TACAAAAATTGTTAGGAAG-
1 GAGTATTCATGTTTGTCTTAT-TTAGGAGACAAACT-TTGA-TTCTTCAAAAA-CGGT-GGAAGA
* * * * * * * * * *
192684 CAAGCGTATCTTACGAAACCAAAGCATCAATATCATGTATCGTTATCAGAA-GACTATGTTTATA
61 AAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATG
* * * *
192748 GTGCCTAATCCT-AAAAGGATTGGGGATTAGTAT
125 GTGCCTAATCTTGAAAA-GAATGGAGATTATTAT
*
192781 GAGTATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAACGGTGGAATGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGGAA-GAAAA
* * * *
192845 GCTTCTCTTGTGACACCAAAGGATCAATGTCATGTATCCTAAT-AACAGGAATGTGTCTT-TGGT
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA-AGGAATGTGT-TTATGGT
* *
192908 TCGC-AATCTTGAAAAGAATGGAGACTT-TTAC
127 GC-CTAATCTTGAAAAGAATGGAGA-TTATTAT
* * ** ** * * * * *
192939 AAG-AATCAATGCATGTCTCCTTTA-AAGTACAAACTTTGATT-TTAAGGAAAATTAGG-CGATG
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCA--AAAA--CGGTGGAAG
* * * ** * * * *
193000 AAAAGATT-TCCATGCAAAAGAAAACCATCAATATCATTTATCCTAACG-AGGAGAATGTGTTTA
60 AAAAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTA
* * * * **
193063 TAGTGCCTAATCATGAAATGAATGAAGATCCTTACT
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * * * * * * *
193099 G-GAATCCATGCTTGTCTCATTTGAGG-CACGAACTTAGAATT-TACAAAAATTGGTGGGAAG-A
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACTTTG-ATTCTTCAAAAA-CGGT-GGAAGAA
* * * * * * * *
193160 AAG-TGTTTCTTGTGAAGCCAAAGCATCAATATCATATATCCTTATTAGAA-GACTATGTTTATG
62 AAGCT-TCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATG
** *
193223 GTGCCTAATCCAGAAAAGAATGTG-GATTAGTAT
125 GTGCCTAATCTTGAAAAGAATG-GAGATTATTAT
** * * *
193256 GAGTATTCATGTTTGTCTTATTTAAAAGACAAACTTTGATTTTATCAATAATGGTGGAATGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGGAA-GAAAA
* * * * * ** * *
193321 GCTTCTCTTGTGACAGCAAAGCATCAATGTCATGCATCCTAAAAAAAGGAATGTATTCT-TGGTT
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTT-TATGGTG
* * * *
193385 CCCAATGTT-AGAAAGATTGGAGACTT-TTAC
128 CCTAATCTTGA-AAAGAATGGAGA-TTATTAT
* *** * * *
193415 GAG-AATCAATGCAAGTCTTATTTA-AAGTACAAACTTTGATT-TTAAGGAAAACGAG-GCAAAG
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCA--AAAACG-GTG-GAAG
* * * * ** * * *
193476 AAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTTATCCTAATG-AGGAGAATGTGTTTA
60 AAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCA-TGTATCCTAATGAAAG-GAATGTGTTTA
* * * * **
193540 TAGTGCCTAATCATGAAAAAAATGAAGATCCTTACT
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * ** * * *
193576 -AGAATCCATGTTTGTCTTATTTGAGCA-ATGAACTCAT-ACTT-TACAAAAATTGGTAGGAAG-
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACT-TTGA-TTCTTCAAAAA-CGGT-GGAAGA
* * * * * * * * * * *
193636 CAAGCGTATCTTACGAAGCCAAAGCATCAATATCATGTATCTTTATCAGAA-GACTATGTTTATA
61 AAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTATG
* * * * *
193700 ATGCCTAATCCTAAAAAGAATGGGGATTAGTAT
125 GTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * *
193733 GAGTATTCATGTTTGTTTTATTTAAGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAAA
* * * * *
193797 GCTTCTCTTGTGATACCAAAGCATCAATGTCATGTATCCTAAT-AACAGGAATGTGTTTTTGGTT
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAA-AGGAATGTGTTTATGGTG
* *
193861 CCCAATCTTGAAAAGAATGGAGACTT-TTAC
128 CCTAATCTTGAAAAGAATGGAGA-TTATTAT
* ** * * * * * ** *
193891 GAG-AATCAATGCATGTCTCACTTA-AAGTACAAACATTGATT-TTAATGAAAATAAG-GCAATG
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCA--AAAA-CGGTGGAA-G
* * * ** * * * *
193952 AAAAGATT-TCCATGCAAAAGAAAACCATCAATATCATTTACCCTAAT-AAGGAGAATGTGTTTA
60 AAAAGCTTCT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTA
* * ** * * **
194015 TAGTGCTTAATCAAGAAATGAATGAAGATCCTTACT
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * * * * * *
194051 -AGAATCCATGTTCGTCTCATTT--GAGGCATGAACTTAGAATT-TACAAAAATTGGTGGGAAG-
1 GAGTATTCATGTTTGTCTTATTTAGGAGACA--AACTTTG-ATTCTTCAAAAA-CGGT-GGAAGA
* * * * *
194111 AAAG-TGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA-GACTATGTTTAT
61 AAAGCT-TCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTAT
*** *
194174 GGTGCCTAATCCAAAAAAGAATGTG-GATTAGTAT
124 GGTGCCTAATCTTGAAAAGAATG-GAGATTATTAT
* * *
194208 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAATGAAAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGGAA-GAAAA
* * * * * * * *
194273 GCTTCTCTTGTGACACCAAAGCATCAATGTCAGGCATCCTAATAAAAGGAATATG-TTATTGGTT
64 GCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTA-TGGTG
* * *
194337 CCCAATGTT-AGAAAGAATGGAGACTT-TTAC
128 CCTAATCTTGA-AAAGAATGGAGA-TTATTAT
* ** * * *
194367 GAG-AATCAATGCATGTCTCATTTA--ATGTACAAACTTTGATT-TTAAGGAAAACGAG-GCAAA
1 GAGTATTC-ATGTTTGTCTTATTTAGGA-G-ACAAACTTTGATTCTTCA--AAAACG-GTG-GAA
* * * * ** * * * * *
194427 GAAAAGATTTTCATGCAAAAGAAAACCATCAATATCCTTTATCGTAATG-AGGAGAATGTGTTTA
59 GAAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTA
* * * * **
194491 TAGTGCCTAATCATGAAATGAATGAAGATCCTTACT
123 TGGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
* * * * * * * * * ***
194527 -AGAATCCGTGTTTCTCTCATTTGAGG-CACGAACTTAGAATT-TACAAAAATTATGGGAAG-AA
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACTTTG-ATTCTTCAAAAACGGT-GGAAGAAA
* * * * * * * *
194588 AGCGTT-TCTTGCGAAACCAAATCATCAATAACCTGTA-CCTGTAT-ACGATGG-CTATGTTAAT
63 AGC-TTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATGA--AAGGAATGTGTTTAT
* * *
194649 GGTGCCTAATCCTAAAAAGAATGG-GATTAGTAT
124 GGTGCCTAATCTTGAAAAGAATGGAGATTATTAT
* * * * * *** * *
194682 GAGTATTCGA-GATTGCCTTATTTAAGAGACAAATTTTGATTTTATCGTTAACGTTGGAAATAAA
1 GAGTATTC-ATGTTTGTCTTATTTAGGAGACAAACTTTGATTCT-TCAAAAACGGTGG-AAGAAA
* * * * *
194746 AGCCTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGGGTTCT-TGGC
63 AGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTT-TATGG-
* * * *
194810 T-CCCAATCTTGAGAAGAACGGAGACTT-TTAC
126 TGCCTAATCTTGAAAAGAATGGAGA-TTATTAT
* ** * * * *
194841 GAG-AATCAATGCATGTCTCATTTA-AAGTACAAACTTTGATT-TTAAGGAAAACGAG-GCAAGG
1 GAGTATTC-ATGTTTGTCTTATTTAGGAG-ACAAACTTTGATTCTTCA--AAAACG-GTGGAA-G
* * * * ** * * *
194902 AAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTAT
60 AAAAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAG-GAATGTGTTTAT
* * * ** **
194966 AGTGCCTAATCATGAAATGAATAAAGATCCTTACT
124 GGTGCCTAATCTTGAAAAGAATGGAGATTATTA-T
** * * * * * * * *
195001 -AAAATCCATGTTTCTCTCATTTGAGG-CACGAA-TTTAGAATT-TACAAAAATTGATGGGAAG-
1 GAGTATTCATGTTTGTCTTATTT-AGGAGACAAACTTT-G-ATTCTTCAAAAA-CGGT-GGAAGA
** ** * *
195061 AAAGCATT-TCTTGCGAAACCAAAGCATCAATATC-TGTATTGTTTTGAGAA-GACTATGTTTAT
61 AAAGC-TTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA-AAGGAATGTGTTTAT
* * * * *
195123 GGTGGCTAATAC-TAAAAAAAATGGGGATT-TGTAC
124 GGTGCCTAAT-CTTGAAAAGAATGGAGATTAT-TAT
* *
195157 GAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTTGATT-TT-AAGAATATCGGTGGAAAGAA
1 GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTTCAA-AA-A-CGGTGG-AAGAA
* * * * * * *
195220 AAGCTTCTCTTGTGACACTAAGGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGT
62 AAGCTTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGT
195285 TCTCAATTTT
Statistics
Matches: 5025, Mismatches: 1560, Indels: 1030
0.66 0.20 0.14
Matches are distributed among these distances:
155 14 0.00
156 129 0.03
157 678 0.13
158 1893 0.38
159 1899 0.38
160 256 0.05
161 38 0.01
162 1 0.00
163 8 0.00
164 70 0.01
165 38 0.01
166 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
GAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTTGATTCTTCAAAAACGGTGGAAGAAAAGC
TTCTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAAGGAATGTGTTTATGGTGCCT
AATCTTGAAAAGAATGGAGATTATTAT
Found at i:196797 original size:475 final size:476
Alignment explanation
Indices: 195444--199395 Score: 5781
Period size: 476 Copynumber: 8.3 Consensus size: 476
195434 AAGATTTGGT
** * * *
195444 TCTCATTTTTGGCATGAACATAGAATTTACAAAAATTGGTGAGAAGAAAGCGTATCTTGCGAAAC
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* ** * * * *
195509 CAAAGCATCAATATCCTGTCCCCTTATAAGAAGACTATGTTGATGGTGCCTAATTCTA-AAAAGA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAA-TCCAGAAAAGA
* * *
195573 ATGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGAC-AACTTTGATTCGATCAATAA
130 ATGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAA
* * *
195637 CGGTGGAAAGGCAAGCTTCTCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAA
195 CGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* *
195702 TGTGATTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATT
260 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATT
** * *
195767 TAAAGTGTAAACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTTC-ATGCAAAAGAAAAC
325 TAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA-TTTCGATGCAAAAGAAAAC
* * * * *
195831 CATCAATATCATGCT-TCCTGATGAGAAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAA
389 CATCAATATCAT-TTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAA
* *
195895 GATCCTTACTAGAATCTATGTTTG
453 GATCCTTACTAGAATCCATGTTTC
* * * * * *
195919 TCTCATTTGAGGCACGAACTTAGAATTTACGAAAATTGGTGTGAAGGAAGCATATCTTGCGAAAC
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * * *
195984 CAAAGCATCAATATAATGTATCCTTATAAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAA
* * *
196049 TGGGGATTAGTACGAGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
131 TGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
* * * * * * * *
196114 GGTGAAAAGATAGGCTTCTTTTGCGATC-GCAAAGCATCATTGTCATGTATCCTAATGAAGGGAA
196 GGTGGAAAGACAAGCTTCTCTTGTGA-CACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* * * ** *
196178 TGTCTTTTTGGTTCCCAATCTTAAAAAGAACAGAGACTTTTACGGGAATCAATGCATGTCTCATT
260 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATT
** *
196243 TAAAGTATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACC
325 TAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACC
196308 ATCAATATCATTTATCCTAAAGTA-GAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAG
390 ATCAATATCATTTATCCTAAAG-AGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAG
* * *
196372 ATCCCTACAAGAATCCATGTTTG
454 ATCCTTACTAGAATCCATGTTTC
* * * * * *
196395 TCTCATTTG-CGCAATGAACTCATACTTTACGCAAAA-TGGTGGGAAGAAAGCGTATCTTGCGAA
1 TCTCATTTGAGGC-ATGAACTTAGAATTTAC-AAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAA
* * *
196458 ACCAAAGCATCAATATCATGTATCCATATAAGAAGACTAAGTTTCTGGTGCCTAATCCAGAAAAG
64 ACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAG
* *
196523 AATGGGGATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGAC-AACTTTGATTCTATCAATA
129 AATGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATA
* *
196587 ACGGTGGAAAGACAAGCTTCTCTTGTGGCACCAAAGCATTAATGTCATGTATCCTAATGAAAGGA
194 ACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGA
196652 ATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCAT
259 ATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCAT
** * *
196717 TTAAAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAAC
324 TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAAC
*
196782 CATCAATACCATTTATCCTAATA-AGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAA
389 CATCAATATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAA
* *
196846 GATCATTACTAGAATCCATGTTTA
453 GATCCTTACTAGAATCCATGTTTC
* * * * *
196870 TCTAATTTGAGGAATGAACTTATACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAAC
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * * * *
196935 CAAAGCATCAATACCAAGTAT-TTGTATGAGAAGTCTATGTTTATGGTGCCTAATCCAGAAAAGA
66 CAAAGCATCAATATCATGTATCCT-TATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGA
*
196999 A-GGTGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAATA
130 ATGG-GGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATA
* * *
197063 ACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCAACATTGTCATGTGTCCTAATGAAAGGA
194 ACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGA
* * * * *
197128 ATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGCAGACTTTTAGGAGAATCAATGCATTTTTCTT
259 ATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCAT
* * *
197193 TTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAG-AAAC
324 TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAAC
*
197257 CTATCAATATCATTTATCCTAAAGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATGAATGAA
389 C-ATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAA
197322 GATCCTTACTAGAATCCATGTTTC
453 GATCCTTACTAGAATCCATGTTTC
* *
197346 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGATAGGGAA-AAAGCGTTTCTTGCGAAA
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGT-GGGAAGAAAGCGTTTCTTGCGAAA
* * *
197410 CCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGA
65 CCAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGA
* * *
197475 ATGTGGATTAGTATGAGTATTCATCTTTGTCTTGTTTAAGAGACAAATTTTGATTCTATCAATAA
130 ATGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAA
* *
197540 CGGTGGAAAGACAAGCTTCTCATGCGACACCAAAGCATCAATG-CATGTATCCTAATGAAAGGAA
195 CGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* *
197604 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTTTCTTT
260 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATT
* * *
197669 TAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAG-AAACC
325 TAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACC
* *
197733 TATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATGAATGAAG
390 -ATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAG
*
197798 ATCCTTACTAGAATCCATGTTTT
454 ATCCTTACTAGAATCCATGTTTC
* * * *
197821 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGATGGGAAAAAAGCATTTCTTGTGAAAC
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* *
197886 CAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAA
* * * * *
197951 TGGGGATTGGTACGAATATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAAC
131 TGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
*
198015 GGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATG-CATGTATCCTAATGAAAGGAAT
196 GGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
* *
198079 GTGTTTTTGGTTCCTAACCTTGAAAAGAATGGAGACTTTTACGAGAATCAATCCATGTCTCATTT
261 GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTT
*
198144 AAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACAA
326 AAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCA
* * * * *
198209 TCAATACCATTTATCCTAATGAGGATAATGTGTTCATAGTGCCTAATCATGAAATGAATGAATAT
391 TCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGAT
** *
198274 AGTTACTAGAATCCATGTTTG
456 CCTTACTAGAATCCATGTTTC
* * * * * *
198295 TCTAATTTGAGGAATGAACTTATACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCTAAAC
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * * * *
198360 CAAAGCATCAATATCATGTATTCGTATGAGAAGTCTATGTTTATGGTGCCTAATCCGGAAAAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAA
* *
198425 T-GTGATTAGTATGAGTATTCATCTTTGTCTTGTTTAAGAGAC-AACTTTGATTCTATCAATAAC
131 TGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
* *
198488 GGTGGAAAGACAAGCTTCTCTTGTGGCACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAAT
196 GGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
198553 GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTT
261 GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTT
** * *
198618 AAAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACCA
326 AAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCA
*
198683 TCAATACCATTTATCCTAATA-AGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGA
391 TCAATATCATTTATCCTAA-AGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGA
*
198747 TCATTACTAGAATCCATGTTTC
455 TCCTTACTAGAATCCATGTTTC
* * * * *
198769 TCTAATTTGAGGAATGAACTTATACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAAC
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * * * *
198834 CAAAGCATCAATACCAAGTAT-TTGTATGAGAAGTCTAGGTTTATGGTGCCTAATCCAGAAAAGA
66 CAAAGCATCAATATCATGTATCCT-TATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGA
*
198898 A-GGTGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAATA
130 ATGG-GGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATA
* * *
198962 ACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCAACATTATCATGTATCCTAATGAAAGGA
194 ACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGA
*
199027 ATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACAAGAATCAATGCATGTCTCAT
259 ATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCAT
* * ** * *
199092 TTAAAGTGCAAACTTTTATTTTATTGAAAATAAGGTAAAGAAAAGATTTCAATGCAAAAGAAAAC
324 TTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAAC
* *
199157 CATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATGAATGAAG
389 CATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAG
199222 ATCCTTACTAGAATCCATGTTTC
454 ATCCTTACTAGAATCCATGTTTC
* * * * * *
199245 TCTCACTTGAGGCACGAACTTAGAATTTACAAAAATTGATAGGAAAAAAGCATTTCTTGCGAAAC
1 TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * *
199310 CAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAA
66 CAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAA
*
199375 TGTGGATTAGTATGAGTATTC
131 TGGGGATTAGTATGAGTATTC
199396 CATCAATAAC
Statistics
Matches: 3165, Mismatches: 280, Indels: 63
0.90 0.08 0.02
Matches are distributed among these distances:
473 94 0.03
474 753 0.24
475 1009 0.32
476 1294 0.41
477 15 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (476 bp):
TCTCATTTGAGGCATGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
CAAAGCATCAATATCATGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAA
TGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAAC
GGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAAT
GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTT
AAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCA
TCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGAT
CCTTACTAGAATCCATGTTTC
Found at i:197289 original size:951 final size:951
Alignment explanation
Indices: 195444--199395 Score: 5890
Period size: 951 Copynumber: 4.2 Consensus size: 951
195434 AAGATTTGGT
** * * * *
195444 TCTCATTTTTGGCATGAACATAGAATTTACAAAAATTGGTGAGAAGAAAGCGTATCTTGCGAAAC
1 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
** * * * * **
195509 CAAAGCATCAATATCCTGTCCCCTTATAAGAAGACTATGTTGATGGTGCCTAATTCTAAAAAGAA
66 CAAAGCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAA
* * *
195574 TGGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTAAGAGACAACTTTGATTCGATCAATAACG
131 TGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACG
* *
195639 GTGGAAAGGCAAGCTTCTCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATGAAAGGAATG
196 GTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG
* *
195704 TGATTTTGGTTCCTAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGCATGTCTCATTTA
261 TGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
** ** * * * *
195769 AAGTGTAAACTTTGATTTTATGGAAAATAAGGCAAATAAAAGATTTTCATGCAAAAGAAAACCAT
326 AAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACCAT
* * * * * *
195834 CAATATCATGCT-TCCTGATGAGAAGAATGTGTTTATAGTGCCTAATCATGAAATGAAAGAAGAT
391 CAATACCAT-TTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGAT
* * * * * * * * *
195898 CCTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACGAAAATTGGTGTGA
455 CATTACTAGAATCCATGTTTATCTAATTTGAGGAATGAACTTAGAATTTACAAAAATTGGAGGGA
* * * *
195963 AGGAAGCATATCTTGCGAAACCAAAGCATCAATA-TAATGTATCCTTATAAGAAGACTATGTTTA
520 AGAAAGCATTTCTTGCGAAACCAAAGCATCAATACCAA-GTATCCTTATGAGAAGACTATGTTTA
* * *
196027 TGGTGCCTAATCCTGAAAAGAATGGGGATTAGTACGAGCATTCATGTTTGTCTTATTTAAGAGAC
584 TGGTGCCTAATCCAGAAAAGAATGGGGATTAGTACGAGTATTCATCTTTGTCTTATTTAAGAGAC
* * * * * * *
196092 AAACTTTGATTCTATCAATAACGGTGAAAAGATAGGCTTCTTTTGCGATC-GCAAAGCATCATTG
649 AAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGA-CACCAAAGCAACATTG
* * * * **
196156 TCATGTATCCTAATGAAGGGAATGTCTTTTTGGTTCCCAATCTTAAAAAGAACAGAGACTTTTAC
713 TCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTAC
* **
196221 GGGAATCAATGCATGTCTCATTTAAAGTATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
778 GAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAA
** *
196286 GATTTTGATGCAAAAGAAAACCATCAATATCATTTATCCTAAAGTA-GAGAATGTGTTTATAGTG
843 GATTTCAATGCAAAAGAAAACCATCAATATCATTTATCCTAAAG-AGGAGAATGCGTTTATAGTG
* * *
196350 CCTAATCATGAAATGAATGAAGATCCCTACAAGAATCCATGTTTG
907 CCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTC
* * * * * * *
196395 TCTCATTTG-CGCAATGAACTCATACTTTACGCAAAA-TGGTGGGAAGAAAGCGTATCTTGCGAA
1 TCTCATTTGAGGC-ACGAACTTAGAATTTAC-AAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAA
* * * * *
196458 ACCAAAGCATCAATATCATGTATCCATATAAGAAGACTAAGTTTCTGGTGCCTAATCCAGAAAAG
64 ACCAAAGCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAG
* *
196523 AATGGGGATTAGTATGAGTATTCATGTTTGTCTCATTTAAGAGACAACTTTGATTCTATCAATAA
129 AATGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAA
* * *
196588 CGGTGGAAAGACAAGCTTCTCTTGTGGCACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAA
194 CGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
196653 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATT
259 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATT
196718 TAAAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACC
324 TAAAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACC
196783 ATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGA
389 ATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGA
* *
196848 TCATTACTAGAATCCATGTTTATCTAATTTGAGGAATGAACTTATACTTTACAAAAATTGGAGGG
454 TCATTACTAGAATCCATGTTTATCTAATTTGAGGAATGAACTTAGAATTTACAAAAATTGGAGGG
* * *
196913 AAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATACCAAGTAT-TTGTATGAGAAGTCTATGTTT
519 AAGAAAGCATTTCTTGCGAAACCAAAGCATCAATACCAAGTATCCT-TATGAGAAGACTATGTTT
*
196977 ATGGTGCCTAATCCAGAAAAGAA-GGTGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAG
583 ATGGTGCCTAATCCAGAAAAGAATGG-GGATTAGTACGAGTATTCATCTTTGTCTTATTTAAGAG
*
197041 ACAAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCAACATT
647 ACAAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCAACATT
* *
197106 GTCATGTGTCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGCAGACTTTTA
712 GTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTA
* * * * * *
197171 GGAGAATCAATGCATTTTTCTTTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAA
777 CGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAA
197236 AGATTTCAATGCAAAAG-AAACCTATCAATATCATTTATCCTAAAGAGGAGAATGCGTTTATAGT
842 AGATTTCAATGCAAAAGAAAACC-ATCAATATCATTTATCCTAAAGAGGAGAATGCGTTTATAGT
197300 GCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTC
906 GCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTC
*
197346 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGATAGGGAA-AAAGCGTTTCTTGCGAAA
1 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGT-GGGAAGAAAGCGTTTCTTGCGAAA
*
197410 CCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGA
65 CCAAAGCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGA
* * *
197475 ATGTGGATTAGTATGAGTATTCATCTTTGTCTTGTTTAAGAGACAAATTTTGATTCTATCAATAA
130 ATGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAA
*
197540 CGGTGGAAAGACAAGCTTCTCATGCGACACCAAAGCATCAATG-CATGTATCCTAATGAAAGGAA
194 CGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAA
* *
197604 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTTTCTTT
259 TGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATT
* ** * * **
197669 TAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCAATGCAAAAG-AAACC
324 TAAAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACC
* * *
197733 TATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATGAATGAAG
389 -ATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAG
* * * *
197798 ATCCTTACTAGAATCCATGTTTTTCTCATTTGAGGCATGAACTTAGAATTTACAAAAATT-GATG
453 ATCATTACTAGAATCCATGTTTATCTAATTTGAGGAATGAACTTAGAATTTACAAAAATTGGA-G
* * * * *
197862 GGAAAAAAGCATTTCTTGTGAAACCAAATCATCAATATCC-TGTATCCTTATGAGAAGACTAAGT
517 GGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAATA-CCAAGTATCCTTATGAGAAGACTATGT
* * * *
197926 TTATGGTGCCTAATCCAGAAAAGAATGGGGATTGGTACGAATATTCATGTTTGTCTTATTTAGGA
581 TTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTACGAGTATTCATCTTTGTCTTATTTAAGA
* * *
197991 GAC-AACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAA
646 GACAAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCAACAT
*
198055 TG-CATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAACCTTGAAAAGAATGGAGACTTTT
711 TGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTT
*
198119 ACGAGAATCAATCCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAA
776 ACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAA
* * * * * * *
198184 AAGATTTCGATGCAAAAGAAAACAATCAATACCATTTATCCTAATGAGGATAATGTGTTCATAGT
841 AAGATTTCAATGCAAAAGAAAACCATCAATATCATTTATCCTAAAGAGGAGAATGCGTTTATAGT
* ** *
198249 GCCTAATCATGAAATGAATGAATATAGTTACTAGAATCCATGTTTG
906 GCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTC
* * * * * * *
198295 TCTAATTTGAGGAATGAACTTATACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCTAAAC
1 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
* * * * *
198360 CAAAGCATCAATATCATGTATTCGTATGAGAAGTCTATGTTTATGGTGCCTAATCCGGAAAAGAA
66 CAAAGCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAA
* *
198425 T-GTGATTAGTATGAGTATTCATCTTTGTCTTGTTTAAGAGACAACTTTGATTCTATCAATAACG
131 TGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACG
* * *
198489 GTGGAAAGACAAGCTTCTCTTGTGGCACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATG
196 GTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG
198554 TGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
261 TGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
198619 AAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACCAT
326 AAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACCAT
198684 CAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
391 CAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
* * *
198749 ATTACTAGAATCCATGTTTCTCTAATTTGAGGAATGAACTTATACTTTACAAAAATTGGAGGGAA
456 ATTACTAGAATCCATGTTTATCTAATTTGAGGAATGAACTTAGAATTTACAAAAATTGGAGGGAA
* * * *
198814 GAAAGCGTTTCTTGCGAAACCAAAGCATCAATACCAAGTAT-TTGTATGAGAAGTCTAGGTTTAT
521 GAAAGCATTTCTTGCGAAACCAAAGCATCAATACCAAGTATCCT-TATGAGAAGACTATGTTTAT
*
198878 GGTGCCTAATCCAGAAAAGAA-GGTGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGAC
585 GGTGCCTAATCCAGAAAAGAATGG-GGATTAGTACGAGTATTCATCTTTGTCTTATTTAAGAGAC
* *
198942 AAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACCAAAGCAACATTAT
649 AAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCAACATTGT
*
199007 CATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACA
714 CATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACG
* * ** *
199072 AGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTTATTTTATTGAAAATAAGGTAAAGAAAAG
779 AGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAG
*
199137 ATTTCAATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCC
844 ATTTCAATGCAAAAGAAAACCATCAATATCATTTATCCTAAAGAGGAGAATGCGTTTATAGTGCC
199202 TAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTC
909 TAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTC
* * * * *
199245 TCTCACTTGAGGCACGAACTTAGAATTTACAAAAATTGATAGGAAAAAAGCATTTCTTGCGAAAC
1 TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
*
199310 CAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAA
66 CAAAGCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAA
*
199375 TGTGGATTAGTATGAGTATTC
131 TGGGGATTAGTATGAGTATTC
199396 CATCAATAAC
Statistics
Matches: 2703, Mismatches: 269, Indels: 58
0.89 0.09 0.02
Matches are distributed among these distances:
947 63 0.02
948 407 0.15
949 388 0.14
950 420 0.16
951 1349 0.50
952 76 0.03
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (951 bp):
TCTCATTTGAGGCACGAACTTAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAAC
CAAAGCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAA
TGGGGATTAGTATGAGTATTCATCTTTGTCTTATTTAAGAGACAACTTTGATTCTATCAATAACG
GTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG
TGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTA
AAGTACAAACACTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTTGATGCAAAAGAAAACCAT
CAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATC
ATTACTAGAATCCATGTTTATCTAATTTGAGGAATGAACTTAGAATTTACAAAAATTGGAGGGAA
GAAAGCATTTCTTGCGAAACCAAAGCATCAATACCAAGTATCCTTATGAGAAGACTATGTTTATG
GTGCCTAATCCAGAAAAGAATGGGGATTAGTACGAGTATTCATCTTTGTCTTATTTAAGAGACAA
ACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCAACATTGTCA
TGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTTTTACGAG
AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
TTCAATGCAAAAGAAAACCATCAATATCATTTATCCTAAAGAGGAGAATGCGTTTATAGTGCCTA
ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTC
Found at i:199249 original size:159 final size:157
Alignment explanation
Indices: 195656--199376 Score: 1404
Period size: 159 Copynumber: 23.5 Consensus size: 157
195646 GGCAAGCTTC
* ** *
195656 TCTTGCGACACCAAAGCATCAATGCCATGTATCCTAATGA-AAGGAATGTGATTT-TGGTTCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTG-TTTATGGTGCCTA
* * * * * ** *
195719 ATCTTGAAAAGAATGGAGA-CTGTTACGAGAATCAATGCATGTCTCATTTAAAGTGTAAACTTTG
64 ATCATGAAAAGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTTTG
* *
195783 ATTTTATGGAAAATAAGGCAAATAAAAGATTT
128 ATTTTAT-GAAAATAAGGTAAAGAAAAGA-TT
* * ** * * *
195815 TCATGCAAAAGAAAACCATCAATATCATGCT-TCCTGATGAGAAGAATGTGTTTATAGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATG-TATCCTAATGAGAAGAATGTGTTTATGGTGCCTAA
* * * * * *
195879 TCATGAAATGAAAGAAGATCCTTACTAGAATCTATGTTTGTCTCATTT-GAG-GCACGAACTTAG
65 TCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCA--AACTTTG
* * ** * * *
195942 AATTTACGAAAATTGGTGTGAAG-GAAGCATA
128 ATTTTATGAAAATAAG-GTAAAGAAAAG-ATT
* * * * *
195973 TCTTGCGAAACCAAAGCATCAATATAATGTATCCTTATAAGAAGACTATGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
* ** * * * * * * *
196038 CCTGAAAAGAATGGGGATTAGTACGAGCATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGAT
66 CATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAA-AGTGCAAACTTTGAT
* * * * *
196102 TCTAT--CAATAACGGTGAAAAGATAGGCTT
130 TTTATGAAAATAA-GGT--AAAGAAAAGATT
* * * * * * * * *
196131 CTTTTGCG-ATCGCAAAGCATCATTGTCATGTATCCTAATGA-AGGGAATGTCTTTTTGGTTCCC
1 -TCTTGCGAAAC-CAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCT
* * * * ** * ** ***
196194 AATCTTAAAAAGAA-CAGAGA-CTTTTACGGGAATCAATGCATGTCTCATTTAAAGTATGAACTT
63 AATCATGAAAAGAATGA-AGATC-ATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTT
* *
196257 TGATTTTAAGGAAAATAAGGCAAAGAAAAGATT
126 TGATTTT-ATGAAAATAAGGTAAAGAAAAGATT
* ** * * * *
196290 T-TGATGCAAAAGAAAACCATCAATATCATTTATCCTAAAGTAG-AGAATGTGTTTATAGTGCCT
1 TCT--TGCGAAACCAAAGCATCAATATCATGTATCCTAATG-AGAAGAATGTGTTTATGGTGCCT
* ** * *
196353 AATCATGAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTCTCATTT---GCGCAATGAACT
63 AATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAAGTGC-A--AACT
* * * * * *
196415 CAT-ACTTTACGCAAAAT--GGTGGGAAG-AAAGCGTA
125 -TTGATTTTATG-AAAATAAGGT--AAAGAAAAG-ATT
* * ** *
196449 TCTTGCGAAACCAAAGCATCAATATCATGTATCC-ATATAAGAAGACTAAGTTTCTGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTA-ATGAGAAGAATGTGTTTATGGTGCCTAA
** * * * * *
196513 TCCA-GAAAAGAATGGGGATTAGTA-TGAGTATTCATGTTTGTCTCATTT-AAGAG-ACAACTTT
65 T-CATGAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAAGTGCA-AACTTT
* * * *
196574 GATTCTAT--CAATAACGGTGGAAAGACAAGCTT
127 GATTTTATGAAAATAA-GGT--AAAGAAAAGATT
* ** * * * *
196606 CTCTTGTGGCACCAAAGCATTAATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTA
1 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * * * ** * **
196670 ATCTTGAAAAGAATGGAGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACACTG
64 ATCATGAAAAGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTTTG
* * *
196734 ATTGTAAGGAAAATAAGGCAAAGAAAAGATT
128 ATT-TTATGAAAATAAGGTAAAGAAAAGATT
* ** * * * * * *
196765 T-TGATGCAAAAGAAAACCATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTA
1 TCT--TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* * *
196829 ATCATGAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTAATTTGAGGAA-TG--AACTT
64 ATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-A--AAGTGCAAACTT
* ** * * *
196891 AT-ACTTTACAAAAATTGGAGG-GAAG-AAAGCGTT
126 -TGATTTTATGAAAA-T-AAGGTAAAGAAAAG-ATT
* * * * ** *
196924 TCTTGCGAAACCAAAGCATCAATACCAAGTAT-TTGTATGAGAAGTCTATGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATGAGAAGAATGTGTTTATGGTGCCTAA
* ** * * * * * * *
196988 TCCA-GAAAAGAAGGTGGATTAGTA-TGAGTATTCATCTTTGTCTTATTTAAGAG-ACAAACTTT
65 T-CATGAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAA-AGTGCAAACTTT
** * * *
197050 GATTCCAT--CAATAACGGTGGAAAGACAAGCTT
127 GATTTTATGAAAATAA-GGT--AAAGAAAAGATT
* * * * * * * *
197082 CTCTTGTGACACCAAAGCAACATTGTCATGTGTCCTAATGA-AAGGAATGTGTTTTTGGTTCCTA
1 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * ** * *
197146 ATCTTGAAAAGAATGCAGA-CTTTTAGGAGAATCAATGCATTT-T-TCTTTTAAAGTGCAAACTT
64 ATCATGAAAAGAATGAAGATC-ATTACTAGAATCCATG--TTTGTCTCATTTAAAGTGCAAACTT
*
197208 TGATTTTATGGAAAATAAGGCAAAGAAAAGATT
126 TGATTTTAT-GAAAATAAGGTAAAGAAAAGATT
* ** * * * * * *
197241 TCAATGC-AAAAGAAACCTATCAATATCATTTATCCTAAAGAGGAGAATGCGTTTATAGTGCCTA
1 TC-TTGCGAAACCAAAGC-ATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* * * * *
197305 ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTT-GAG-GCACGAACTTA
64 ATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCA--AACTTT
* ** * **
197368 GAATTTACAAAAATTGATAGGGAAA-AAGCG-TT
127 GATTTTATGAAAA-T-A-AGGTAAAGAAAAGATT
* * * * **
197400 TCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
** ** * * * * * ** * *
197465 CCGGAAAAGAATGTGGATTAGTA-TGAGTATTCATCTTTGTCTTGTTTAAGAG-ACAAATTTTGA
66 CATGAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAA-AGTGCAAACTTTGA
* * * *
197528 TTCTAT--CAATAACGGTGGAAAGACAAGCTT
129 TTTTATGAAAATAA-GGT--AAAGAAAAGATT
* * * * *
197558 CTCATGCGACACCAAAGCATCAAT-GCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTA
1 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * * * ** * *
197621 ATCTTGAAAAGAATGGAGA-CTTTTACGAGAATCAATGCATGTTTCTTTTAAAGTGCAAACTTTG
64 ATCATGAAAAGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTTTG
*
197685 ATTTTATGGAAAATAAGGCAAAGAAAAGATT
128 ATTTTAT-GAAAATAAGGTAAAGAAAAGATT
* ** * * * * *
197716 TCAATGC-AAAAGAAACCTATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTA
1 TC-TTGCGAAACCAAAGC-ATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* * * * *
197780 ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTTTCTCATTT-GAG-GCATGAACTTA
64 ATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCA--AACTTT
* ** * *
197843 GAATTTACAAAAATTGATGG-GAA-AAAAGCATT
127 GATTTTATGAAAA-T-AAGGTAAAGAAAAG-ATT
* * * * * **
197875 TCTTGTGAAACCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
** *** * * * * *
197940 CCA-GAAAAGAATGGGGATTGGTACGA-ATATTCATGTTTGTCTTATTT-AGGAG-ACAACTTTG
66 -CATGAAAAGAATGAAGATCATTACTAGA-ATCCATGTTTGTCTCATTTAAAGTGCA-AACTTTG
* * * *
198001 ATTCTAT--CAATAACGGTGGAAAGACAAGCTT
128 ATTTTATGAAAATAA-GGT--AAAGAAAAGATT
* * * *
198032 CTCTTGCGACACCAAAGCATCAAT-GCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTA
1 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * * * * *** *
198095 ACCTTGAAAAGAATGGAGA-CTTTTACGAGAATCAATCCATGTCTCATTTAAAGTACAAACTTTG
64 ATCATGAAAAGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTTTG
* *
198159 ATTTTAAGGAAAATAAGGCAAAGAAAAGATT
128 ATTTT-ATGAAAATAAGGTAAAGAAAAGATT
* ** * * * * * * *
198190 TCGATGC-AAAAGAAAACAATCAATACCATTTATCCTAATGAGGATAATGTGTTCATAGTGCCTA
1 TC-TTGCGAAACCAAAGC-ATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* * *
198254 ATCATGAAATGAATGAATAT-AGTTACTAGAATCCATGTTTGTCTAATTTGAGGAA-TG--AACT
64 ATCATGAAAAGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTT-A--AAGTGCAAACT
* ** * * *
198315 TAT-ACTTTACAAAAATTGGAGG-GAAG-AAAGCGTT
125 T-TGATTTTATGAAAA-T-AAGGTAAAGAAAAG-ATT
* * ** *
198349 TCTTGCTAAACCAAAGCATCAATATCATGTATTCGT-ATGAGAAGTCTATGTTTATGGTGCCTAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTA-TCCTAATGAGAAGAATGTGTTTATGGTGCCTAA
** * * * * * * ** *
198413 TCCGGAAAAGAATG-TGATTAGTA-TGAGTATTCATCTTTGTCTTGTTT-AAGAG-ACAACTTTG
65 TCATGAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAAAGTGCA-AACTTTG
* * * *
198474 ATTCTAT--CAATAACGGTGGAAAGACAAGCTT
128 ATTTTATGAAAATAA-GGT--AAAGAAAAGATT
* ** * * * *
198505 CTCTTGTGGCACCAAAGCATTAATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTA
1 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * * * ** * **
198569 ATCTTGAAAAGAATGGAGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACACTG
64 ATCATGAAAAGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTTTG
* * *
198633 ATTGTAAGGAAAATAAGGCAAAGAAAAGATT
128 ATT-TTATGAAAATAAGGTAAAGAAAAGATT
* ** * * * * * *
198664 T-TGATGCAAAAGAAAACCATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTA
1 TCT--TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* * *
198728 ATCATGAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTAATTTGAGGAA-TG--AACTT
64 ATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-A--AAGTGCAAACTT
* ** * * *
198790 AT-ACTTTACAAAAATTGGAGG-GAAG-AAAGCGTT
126 -TGATTTTATGAAAA-T-AAGGTAAAGAAAAG-ATT
* * * * **
198823 TCTTGCGAAACCAAAGCATCAATACCAAGTAT-TTGTATGAGAAGTCTAG-GTTTATGGTGCCTA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCT-AATGAGAAGAAT-GTGTTTATGGTGCCTA
* ** * * * * * * *
198886 ATCCA-GAAAAGAAGGTGGATTAGTA-TGAGTATTCATCTTTGTCTTATTTAAGAG-ACAAACTT
64 AT-CATGAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTAA-AGTGCAAACTT
** * * *
198948 TGATTCCAT--CAATAACGGTGGAAAGACAAGCTT
126 TGATTTTATGAAAATAA-GGT--AAAGAAAAGATT
* * * * * *
198981 CTCTTGTGACACCAAAGCAACATTATCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTA
1 -TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTA
* * * * * ** *
199045 ATCTTGAAAAGAATGGAGA-CTTTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTT
64 ATCATGAAAAGAATGAAGATC-ATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTTTG
199109 ATTTTATTGAAAATAAGGTAAAGAAAAGATT
128 ATTTTA-TGAAAATAAGGTAAAGAAAAGATT
* * ** * * * * *
199140 TCAATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAA
1 TC-TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAA
* * * * * *
199205 TCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTCACTT-GAG-GCACGAACTTAG
65 TCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCA--AACTTTG
* **
199268 AATTTACAAAAATTGATAGG--AA-AAAAGCATT
128 ATTTTATGAAAA-T-A-AGGTAAAGAAAAG-ATT
* * * * **
199299 TCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
**
199364 CCGGAAAAGAATG
66 CATGAAAAGAATG
199377 TGGATTAGTA
Statistics
Matches: 2548, Mismatches: 775, Indels: 479
0.67 0.20 0.13
Matches are distributed among these distances:
152 1 0.00
153 7 0.00
154 14 0.01
155 12 0.00
156 41 0.02
157 231 0.09
158 989 0.39
159 1117 0.44
160 69 0.03
161 36 0.01
162 31 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
CATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAAGTGCAAACTTTGATT
TTATGAAAATAAGGTAAAGAAAAGATT
Found at i:201111 original size:12 final size:11
Alignment explanation
Indices: 201089--201164 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
201079 AGAGAAAGAA
*
201089 GAGAGAGGAGG
1 GAGATAGGAGG
201100 GATGATAGGAGG
1 GA-GATAGGAGG
*
201112 AGAGACAGGA--
1 -GAGATAGGAGG
*
201122 GAGATAGTA--
1 GAGATAGGAGG
201131 GAGATAGGAGG
1 GAGATAGGAGG
201142 GATGATAGGAGG
1 GA-GATAGGAGG
*
201154 AGAGACAGGAG
1 -GAGATAGGAG
201165 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:201121 original size:24 final size:24
Alignment explanation
Indices: 201088--201173 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
201078 AAGAGAAAGA
*
201088 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
201112 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
201130 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
201154 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
201174 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:201140 original size:42 final size:42
Alignment explanation
Indices: 201079--201197 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
201069 TAGCCCTCAA
* *
201079 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
201121 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
201163 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
201198 GAGAGAAAAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:206892 original size:159 final size:155
Alignment explanation
Indices: 206618--213175 Score: 2376
Period size: 159 Copynumber: 41.4 Consensus size: 155
206608 CTCCTACGAC
* * * * *
206618 ACCAAAGCATCAATGTCATGTATCCTAATCA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * ** * * *
206682 GAATGGAGA-CTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGA
65 GAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTAA--A
* *
206746 AAATAAGGCAAAGAAAAGATTTCAATGCAAA
127 AAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * *
206777 AGAAAACCATCAATACCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * * *
206842 AATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAAA
66 AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAAA
* * *
206907 TTATGGGAAG-AAAGCGTTTCTTGCGAA
130 -TAAGGAAAGAAAAG-ATTTCTTGCGAA
* * * * * * **** * * *
206934 ACCAAATCATCAATAACCTGTA-CCTGTATAAGATGGCCATGTTAATGGTGCCTAATCCTAAAAA
1 ACCAAAGCATCAATATCATGTATCCT-AATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA
* * * * * * * * *
206998 GAATG-GGAT-TAGTA-TGAGTATTCGA-GATTGCCTTATTTAAGAG-ACAAATTTTGATTTTAT
65 GAATGAAGATCT-TTACT-AG-AATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTA-
* ** * * * *
207058 CGTTAACGT-TGGAAATAAAAGCCTTTCTTGCGAC
125 ---AAAAATAAGGAAAGAAAAG-ATTTCTTGCGAA
* * * * * *
207092 ACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGGGTTCT-TGGCT-CCCAATCTTGAG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTT-TATGG-TGCCTAATCATGAA
* * * ** * * **
207154 AAGAA-CAGAGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAA
63 AAGAATGA-AGATC-TTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTAA
** * *
207217 GGAAAACGAGGCAAGGAAAAGATTTTCATGC-AA
126 --AAAATAAGG-AAAGAAAAGA-TTTCTTGCGAA
** * * * * *
207250 AAGAAAGCCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCATGAAAT
1 ACCAAAG-CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA
* * * * * *
207315 GAATAAAGATCCTTACTAAAATCCATGTTTCTCTCATTTGAGGCACGAA-TTTAGAATTTACAAA
65 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTT-GATTTTA-AAA
* * *
207379 AATTGATGGGAAG-AAAGCATTTCTTGCGAT
128 AA-T-AAGGAAAGAAAAG-ATTTCTTGCGAA
** ** * * * *
207409 ACCAAAGCATCAATATC-TGTATTGTTTTGAGAAGACTATGTTTATGGTGGCTAAT-ACTAAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCA-TGAAAA
* ** * * * *
207472 AAATGGGGAT-TTGTA-TGAGTATTCATGTTTGTCTTATTAAAGAG-ACGAACTTTGATTTTAAG
65 GAATGAAGATCTT-TACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAA-
* ** * * *
207534 AATATCGGTGGAAAGAAAAGCTTCTCTTGTGAC
126 AAAAT--AAGGAAAGAAAAGATT-TCTTGCGAA
* * * * * * ** *
207567 ACTAAGGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGT-TCTCAATTTTTAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCT-AATCATGAAA
* * * * * * * * * *
207630 A-AATTGGAGA-CGGTCACAAGAATCAATGCTTG-CCCTATTGAAGGGACAAACTTTGATTTTAA
64 AGAA-TGAAGATC-TTTACTAGAATCCATGTTTGTCTC-ATTTAAGGCACGAACTTTGATTTTAA
* * *
207692 GTAAAATAGGGAAAAGAAAAGATTTTCGTGCAAA
126 --AAAATAAGG-AAAGAAAAGA-TTTCTTGCGAA
** * * * * * * * *
207726 AAAAAACCGTCAATAACATTTATGCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAAAC
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA-
* * * * * * *
207790 GAATGAAGATCATTTTGCTAGAATCCCTGCTTGTCTCATTTGAGGCACAAACTTAGACTTTACAA
65 GAATGAAGATC--TTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AA
* *
207855 AAATTAGTGGGAAG-AAAGCATTTCTTGCGAA
127 AAA-TA-AGGAAAGAAAAG-ATTTCTTGCGAA
* * * * * **
207886 ACCAAAGCATCAATATCATTTATCCTTATGTGAAGACTATGTTTATGGTGCCTAATCCCGAAAAG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * * ** * * * ** *
207951 AATGCCA-AT-TAGTA-TGAGTATTTAGGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCCAT
66 AATG-AAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAA
* * ** *
208011 CAATAACGGTGGAAAGACAACCTTCTCTTGCGAC
127 AAATAA----GGAAAGAAAAGATT-TCTTGCGAA
* * * * * * *
208045 ACCAAAGCAACATTGTCACGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * ** *
208109 GAATGGAGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCA--AACTTTGACTTTGTG
65 GAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGA-TTT-TA
* * *
208171 GAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
125 AAAAATAAGG-AAAGAAAAGATTT-CTTGCGAA
** * * * ** * *
208204 AGAAAACCATCAATATCATGCATCCTGATGAGGTGAATGTGTTTATAGTG-CTAATCATGAAATG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * ** * * *
208268 AATGACGATCCTTACTAGAATCCATGTTTGTCTCATTTTTGGCACGAACATAGAATTTACAAAAA
66 AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAAA
** * *
208333 TTGGTGAGAAG-AAAGCGTATCTTGCGAA
130 TAAG-GA-AAGAAAAG-ATTTCTTGCGAA
* ** * * * * * *
208361 ACCAAAGCATCAATATCCTGTCCCCTTATAAGAAGACTATGTTGATGGTGCCTAATTC-TAAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAA-TCATGAAAA
* * * * * ** *
208425 GAATGAGGAT-TAGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-AC-AACTTTGA-TTCGAT
65 GAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAA
* ** * *
208485 CAATAACGGTGGAAAGGCAAGCTTCTCTTGCGAC
127 AAATAA----GGAAAGAAAAGATT-TCTTGCGAA
** * *
208519 ACCAAAGCATCAATGCCATGTATCCTAATGA-AAGGAATGTGATTT-TGGTTCCTAATCTTGAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTG-TTTATGGTGCCTAATCATGAAA
* * * ** *
208582 AGAATGGAGA-CTATTACGAGAATCAATGCATGTCTCATTTAAAGTGTA--AACTTTGATTTTAT
64 AGAATGAAGATCT-TTACTAGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGATTTTA-
* * * *
208644 GGAAAATAAGGCAAATAAAAGATTTTCATGCAAA
125 -AAAAATAAGG-AAAGAAAAGA-TTTCTTGCGAA
** * * * *
208678 AGAAAACCATCAATATCATGCATCC-AGATGAGAAGAATGTGTTTATAGTGCCTAATCATGAAAT
1 ACCAAAGCATCAATATCATGTATCCTA-ATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA
* * * * * * *
208742 GAAAGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACGAAA
65 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAA
** * * *
208807 ATTGGTGTGAAG-GAAGCATATCTTGCGAA
129 ATAAG-G-AAAGAAAAG-ATTTCTTGCGAA
* * * * * * *
208836 ACCAAAGCATCAATATAATGTATCCTTATAAGGAGACTATGTTTATGGTGCCTAATCCTGAAAAG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
** * * * * * * **
208901 AATGGGGAT-TAGTA-TGAGCATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTCT-ATC
66 AATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAAA
* * * *
208962 AATAACGGTGGAAAGATAGGCTTCTTTTGCG-A
128 AATAA----GGAAAGAAAAGATT-TCTTGCGAA
* * * * * * * * * *
208994 TCACAAAGCATCATTGTCATGTATCCTAATGA-AGGGAATGTCTTTTTGGTTCCCAATCTTAAAA
1 AC-CAAAGCATCAATATCATGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAATCATGAAA
* ** * ** * *
209058 AGAA-CAGAGA-CTTTTACGGGAATCAATGCATGTCTCATTTAAAGTACGAACTTTGATTTTAAG
64 AGAATGA-AGATC-TTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTAA-
* *
209121 GAAAATAAGGCAAAGAAAAGATTTTCATGCAAA
126 -AAAATAAGG-AAAGAAAAGA-TTTCTTGCGAA
** * * * * *
209154 AGAAAACCATCAATATCATTTATCCTAAAGCAG-AGAATGTGTTTATAGTGCCTAATCATGAAAT
1 ACCAAAGCATCAATATCATGTATCCTAATG-AGAAGAATGTGTTTATGGTGCCTAATCATGAAAA
** * * * *
209218 GAATGAAGATCCCTACAAGAATCCATGTTTGTCTCATTT--GCGCAATGAACTCAT-ACTTTACG
65 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAG-GC-ACGAACT-TTGATTTTA--
* ** * * *
209280 CAAAATGGTGGGAAG-AAAGCGTATCTTGCGAA
125 AAAAAT-AAGGAAAGAAAAG-ATTTCTTGCGAA
* * **
209312 ACCAAAGCATCAATATCATGTATCC-ATATAAGAAGACTAAGTTTATGGTGCCTAATCCA-GAAA
1 ACCAAAGCATCAATATCATGTATCCTA-ATGAGAAGAATGTGTTTATGGTGCCTAAT-CATGAAA
** * * * * *
209375 AGAATGGGGAT-TAATA-TGAGTATTCATGTTTGTCTCATTTAAGAG-AC-AACTGTGATTCT-A
64 AGAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAA
** * * * **
209435 TCAATAACGGTGGAAAGACAAGCTTCTCTTGTGGC
126 AAAATAA----GGAAAGAAAAGATT-TCTTGCGAA
* * * * *
209470 ACCAAAGCATTAATGTCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * ** * * * ** *
209534 GAATGGAGA-CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACACTGATTGTAAGGA
65 GAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTAA--A
*
209598 AAATAAGGCAAAGAAAAGATTT-TGATGCAAA
127 AAATAAGG-AAAGAAAAGATTTCT--TGCGAA
** * * * * * * *
209629 AGAAAACCATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATGAAATG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * * * * *
209694 AATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGAATGAACTTAT-ACTTTACAAAA
66 AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTT-TGATTTTA-AAAA
* * *
209758 ATTGGAGGGAAG-AAAGCGTTTCTTGCGAA
129 A-T-AAGGAAAGAAAAG-ATTTCTTGCGAA
* * * ** *
209787 ACCAAAGCATCAATACCATGTAT-TTGTATGAGAAGTCTATGTTTATGGTGCCTAATCCA-GAAA
1 ACCAAAGCATCAATATCATGTATCCT-AATGAGAAGAATGTGTTTATGGTGCCTAAT-CATGAAA
* ** * * * * * * **
209850 AGAAGGTGGAT-TAGTA-TGAGTATTCATCTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCCA
64 AGAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAA
** * * ** *
209911 TCAATAACGGTGGAAAGACAAGCTTCTCTTATGAC
126 AAAATAA----GGAAAGAAAAGATT-TCTTGCGAA
* * * * * * *
209946 ACCAAAGCAACATTGTCATGTGTCCTAATGA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * ** * *
210010 GAATGGAGA-CTTTTA-TGAGAATCAATGCATGTTTCTTTTAAAGTGCA--AACTTTGATTTTAT
65 GAATGAAGATC-TTTACT-AGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGATTTTA-
* *
210071 GGAAAATAAGGCAAAGAAAAGATTTCAATGC-AA
125 -AAAAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * *
210104 AAGAAACCTATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAAT
1 ACCAAAGC-ATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA
* ** * * *
210169 GAATGAAGATCCTTACTAGAATCCATGTTCCTCTCATTTGAGGCACGAACTTAGAATTTACAAAA
65 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAA
*
210234 ATTGATAGGAAA-AAAAGCGTTTCTTGCGAA
129 A-T-A-AGGAAAGAAAAG-ATTTCTTGCGAA
* * * * ** **
210264 ACCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
** * * * * ** * * **
210329 AATGTGGAT-TAGTA-TGAGTATTCATCTTTGTCTTGTTTAAGAG-ACAAACTTTGATTCT-ATC
66 AATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAAA
* * *
210390 AATAACGGTGGAAAGACAAGCTTCTCTTGCGAC
128 AATAA----GGAAAGAAAAGATT-TCTTGCGAA
* * * * *
210423 ACCAAAGCAACAAT-GCATGTATCCTAATGA-AAGCAAATGTGTTTTTGGTTCCTAATCTTGAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAG--AATGTGTTTATGGTGCCTAATCATGAAA
* * * ** * *
210486 AGAATGGAGA-CTTTTACGAGAATCAATGCATGTTTCTTTTAAAGTGCA--AACTTTGATTTTAT
64 AGAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGATTTTA-
* *
210548 GGAAAATAAGGCAAAGAAAAGATTTCAATGC-AA
125 -AAAAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * *
210581 AAGAAACCTATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAAT
1 ACCAAAGC-ATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA
* * * * * *
210646 GAATGAAGATCCTTACTAGAATCCATGTTTTTCTCATTTGAGGCATGAACTTAGAATTTACAAAA
65 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAA
* * *
210711 ATTGATCGG-AA-ATAAGCATTTCTTGTGAA
129 A-T-A-AGGAAAGAAAAG-ATTTCTTGCGAA
* * * * **
210740 ACCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATC-TAGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCAT-GAAAA
** * * * * * * * **
210804 GAATGGGGAT-TGGTACGAGTATTCATGTTTGTCTTATTT-AGGAGAC-AACTTTGATTCT-ATC
65 GAATGAAGATCT-TTACTAGAATCCATGTTTGTCTCATTTAAGG-CACGAACTTTGATTTTAAAA
* * ** *
210865 AATAACGGTGGAAAGACAAGCTTCTCTTATGAC
128 AATAA----GGAAAGAAAAGATT-TCTTGCGAA
* * * * * * *
210898 ACCAAAGCAACATTGTCATGTGTCCTAATGA-AAGGAATGTGTTTTTGGTTCCAAATCATGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * * *
210962 GAATGGAGA-CTTTTA-TGAGAATCAATGCTTGTTTCTTTTAAAGTGCA--AACTTTGATTTTAT
65 GAATGAAGATC-TTTACT-AGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGATTTTA-
* *
211023 GGAAAATAAGGTAAAGAAAAGATTTCGATGC-AA
125 -AAAAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * * * *
211056 AAGAAAACAATCAATACCATTTATCCTAATGAGGATAATGTGTTCATAGTGCCTAATCATGAAAT
1 ACCAAAGC-ATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAA
* * * * * * *
211121 GAATGAAGATCGTTACTAGAATCCATGTTTGTCTAATTTGAGGAATGAACTTAGAATTTACAAAA
65 GAATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAA
*
211186 ATTGATAGG-AA-AAAAGCGTTTCTTGCGAA
129 A-T-A-AGGAAAGAAAAG-ATTTCTTGCGAA
* * * * ** **
211215 ACCAAATCATCAATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
** * * * * ** * * **
211280 AATGTGGAT-TAGTA-TGAGTATTCATCTTTGTCTTGTTTAAGAG-ACAAACTTTGATTCT-ATC
66 AATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAAA
* * * *
211341 AATAACGGAGGGAAGACAAGCTTCTCTTGTGAC
128 AATAA-GGA---AAGAAAAGATT-TCTTGCGAA
* * * * *
211374 ACCAAAGCAACATTATCATGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * **
211438 GAATGGAGA-CTTTTACAAGAATCAATGCATGTCTCATTTAAAGTGCA--AACTTTGATTTTATG
65 GAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGATTTTA--
* * *
211500 GAAAATAAGGTAAAGAAAAGATTTCAATGCAAA
125 AAAAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * *
211533 AGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * * * *
211598 AATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTACAAAAA
66 AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAAA
*
211663 TTGATAGG-AA-AAAAGCGTTTCTTGCGAA
130 -T-A-AGGAAAGAAAAG-ATTTCTTGCGAA
* * * * * **
211691 ACCAAATCATCAATATCCTGTATCCTTATGAGAAG-ACGAAGTTTATGGTGCCTAATCCGGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATG-TGTTTATGGTGCCTAATCATGAAAA
** * * * * ** * * *
211755 GAATGTGGAT-TAGTA-TGAGTATTCATCTTTGTCTTGTTTAAGAG-ACAAACTTTGATTCT-AT
65 GAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAA
* * * * *
211816 CAATAACGGAGGGAAGACAAGCTTCTCTTGTGAC
127 AAATAA-GGA---AAGAAAAGATT-TCTTGCGAA
* * * * * * *
211850 ACCAAAGCAACATTATCTTGTATCCTAATGA-AAGGAATGTATTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * **
211914 GAATGGAGA-CTTTTACAAGAATCAATGCATGTCTCATTTAAAGTGCA--AACTTTGATTTTATG
65 GAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGATTTTA--
* * *
211976 GAAAATAAGGTAAAGAAAAGATTTCAATGCAAA
125 AAAAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * *
212009 AGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * * * *
212074 AATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTACAAAAA
66 AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAAA
*
212139 TTGATAGG-AA-AAAAGCGTTTCTTGCGAA
130 -T-A-AGGAAAGAAAAG-ATTTCTTGCGAA
* * * * * **
212167 ACCAAATCATCAATATCCTGTATCCTTATGAGAAG-ACGAAGTTTATGGTGCCTAATCCGGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATG-TGTTTATGGTGCCTAATCATGAAAA
** * * * * ** * * *
212231 GAATGTGGAT-TAGTA-TGAGTATTCATCTTTGTCTTGTTTAAGAG-ACAAACTTTGATTCT-AT
65 GAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAA
* * * * *
212292 CAATAACGGAGGGAAGACAAGCTTCTCTTGTGAC
127 AAATAA-GGA---AAGAAAAGATT-TCTTGCGAA
* * * * * * *
212326 ACCAAAGCAACATTATCTTGTATCCTAATGA-AAGGAATGTATTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * **
212390 GAATGGAGA-CTTTTACAAGAATCAATGCATGTCTCATTTAAAGTGCA--AACTTTGATTTTATG
65 GAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTT-AAG-GCACGAACTTTGATTTTA--
* * *
212452 GAAAATAAGGTAAAGAAAAGATTTCAATGCAAA
125 AAAAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * *
212485 AGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * * * *
212550 AATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTACAAAAA
66 AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAAA
* *
212615 TTGATAGG-AA-AAAAGCGTTTCTTGTGAA
130 -T-A-AGGAAAGAAAAG-ATTTCTTGCGAA
* * * * * **
212643 ACCAAATCATCAATATCCTGTATCATTATGAGAAGACTAAGTTTATGGTGCCTAATC-TAGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCAT-GAAAA
* ** * * * * * * *
212707 AAATGGGGAT-TGGTA-TGAGTATTCATATTTGTCTTATTTAAGTG-AC-AA---TCA--AT-AA
65 GAATGAAGATCT-TTACT-AGAATCCATGTTTGTCTCATTTAAG-GCACGAACTTTGATTTTAAA
*** * * * * * *
212762 GGGT--GGAAAGACAAGCTTCCCCTACGAC
127 AAATAAGGAAAGAAAAGATT-TCTTGCGAA
* * * * *
212790 ACCAAAGCATCAATGTCATGTATCCTAATCA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAA
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCATGAAAA
* * * * ** * * * *
212854 GAATGGAGA-CTTTTACAAGAAACAATGCATGTCTCATTTAAAGTACAAACTTTTATTTTAAGGA
65 GAATGAAGATC-TTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTAA--A
* *
212918 AAATAAGGTAAAGAAAAGATTTCAATGCAAA
127 AAATAAGG-AAAGAAAAGATTTC-TTGCGAA
** * * * * * *
212949 AGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATGAAATG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
* * * * *
213014 AATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTACAAAAA
66 AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTA-AAAAA
* *
213079 TTAAGCGAAAG-AAAGCGTTTCTTACGAA
130 -TAAG-GAAAGAAAAG-ATTTCTTGCGAA
** * * * * **
213107 ACCAAATAATCAATATCATGTATCTTTATGAGAAGACTATGTTTATGGTGCCTAATCCGGAAAAG
1 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
213172 AATG
66 AATG
213176 TGGGTTAGTA
Statistics
Matches: 4574, Mismatches: 1394, Indels: 863
0.67 0.20 0.13
Matches are distributed among these distances:
145 2 0.00
146 7 0.00
147 83 0.02
148 4 0.00
149 1 0.00
150 2 0.00
151 2 0.00
152 1 0.00
153 5 0.00
154 17 0.00
155 15 0.00
156 69 0.02
157 305 0.07
158 1495 0.33
159 2216 0.48
160 213 0.05
161 79 0.02
162 58 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (155 bp):
ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCATGAAAAG
AATGAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTTGATTTTAAAAAAT
AAGGAAAGAAAAGATTTCTTGCGAA
Found at i:209101 original size:476 final size:475
Alignment explanation
Indices: 205833--214142 Score: 11273
Period size: 476 Copynumber: 17.6 Consensus size: 475
205823 AGACTTTCAC
205833 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
* *
205898 AAATGAATGAAGATCCTTAC-AGGAATCCATGCTTGTCTCATTTGAGGCATGAACTTAGAATTTA
66 AAATGAATGAAGATCCTTACTA-GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTA
* * * * * * *
205962 CGAAAATTGGTGCTAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCATATTA
130 CAAAAATTGATG-GAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGA
* * *
206027 GAAGACTATGTTTATGGTGCCTAATCC-AAAAAGAATGTGGATTAGTCTGAGTATTCATGTTTGT
194 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * *
206091 CTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAATGAAAAGCTTCTCTTGTGACAC
259 CTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACAC
* * * * * *
206156 CAAAGCATCAATGTCATGCATCATAATAAAAGGAATGTGTTCTTGGTTCCCAATGTT-AGAAAGA
324 CAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGA-AAAGA
*
206220 ATGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAA
388 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAA
* *
206285 TAAGGTAAAGAAAAGAATTCAAT
453 TAAGGCAAAGAAAAGATTTCAAT
*
206308 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
*
206373 AAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* ** * *
206438 AAAAATTGATAGGAAAAAAATGTTTCTTGTGAAACCAAATCATCAATATCCTGTATCCTTATGAG
131 AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAG
* * * *
206503 AAGACTAAGTTTATGGTGCCTAAT-CTAGAAAAAAATGGGGATTGGTATGAGTATTCATATTTGT
195 AAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * **
206567 CTTATTTAAGAG----AC----A----ATCAGTAAGGGTGGAAAGACAAGCTTCTCCTACGACAC
259 CTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACAC
*
206620 CAAAGCATCAATGTCATGTATCCTAATCAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
324 CAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
* * *
206685 TGGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAAT
389 TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAAT
206750 AAGGCAAAGAAAAGATTTCAAT
454 AAGGCAAAGAAAAGATTTCAAT
*
206772 GCAAAAGAAAACCATCAATACCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
206837 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* * *
206902 AAAAATT-ATGGGAAGAAAGCGTTTCTTGCGAAACCAAATCATCAATAACCTGTA-CCTGTATAA
131 AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCT-TATGA
* * * * * *
206965 GATGGCCATGTTAATGGTGCCTAATCCTAAAAAGAAT-GGGATTAGTATGAGTATTCGA-GATTG
194 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTC-ATGTTTG
* * * ** * * * *
207028 CCTTATTTAAGAGACAAATTTTGATTTTATCGTTAACGTTGGAAATAAAAGCCTT-TCTTGCGAC
258 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAG-CTTCTCTTGTGAC
* * * * * *
207092 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGGGTTCTTGGCTCCCAATCTTGAGAAG
322 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
** ** *
207157 AACAGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAA
** *
207222 ACGAGGCAAGGAAAAGATTTTC-AT
452 ATAAGGCAAAGAAAAGA-TTTCAAT
* *
207246 GCAAAAGAAAGCCATCAATATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
* * * *
207311 AAATGAATAAAGATCCTTACTAAAATCCATGTTTCTCTCATTTGAGGCACGAATTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* * ** *
207376 AAAAATTGATGGGAAGAAAGCATTTCTTGCGATACCAAAGCATCAATAT-CTGTATTGTTTTGAG
131 AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAG
* * * * *
207440 AAGACTATGTTTATGGTGGCTAATACTAAAAAAAATGGGGATTTGTATGAGTATTCATGTTTGTC
195 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * ** * * *
207505 TTATTAAAGAGACGAACTTTGATTTTAAGAATATCGGTGGAAAGAAAAGCTTCTCTTGTGACACT
260 TTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACC
* * * *
207570 AAGGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CTCAATTTTTAAAA-AA
325 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCT-AATCTTGAAAAGAA
** * * * * * * * *
207633 TTGGAGACGGTCACAAGAATCAATGCTTG-C-CCTATTGAAGGGACAAACTTTGATTTTAAGTAA
389 -TGGAGACTTTTACGAGAATCAATGCATGTCTCAT-TTAAAGTG-CAAACTTTGATTTTATGGAA
* * *
207696 AATAGGGAAAAGAAAAGATTTTC-GT
451 AATAAGGCAAAGAAAAGA-TTTCAAT
* * * * **
207721 GCAAAAAAAAACCGTCAATAACATTTATGCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
* * * * * * *
207786 AAACGAATGAAGATCATTTTGCTAGAATCCCTGCTTGTCTCATTTGAGGCACAAACTTAGACTTT
66 AAATGAATGAAGATC--CTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTT
* * *
207851 ACAAAAATT-AGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAATATCATTTATCCTTAT
129 ACAAAAATTGA-T-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTAT
* * *** * *
207915 GTGAAGACTATGTTTATGGTGCCTAATCCCGAAAAGAATGCCAATTAGTATGAGTATTTAGGTTT
192 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * *
207980 GTCTTATTTAAGAGACAAACTTTGATTCCATCAATAACGGTGGAAAGACAACCTTCTCTTGCGAC
257 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGAC
* * *
208045 ACCAAAGCAACATTGTCACGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
322 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
* *
208110 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGACTTTGTGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAA
*
208175 ATAAGGCAAAGAAAAGATTTCCAT
452 ATAAGGCAAAGAAAAGATTTCAAT
** * *
208199 GCAAAAGAAAACCATCAATATCATGCATCCTGATGAGGTGAATGTGTTTATAGTG-CTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
* ** *
208263 AAATGAATGACGATCCTTACTAGAATCCATGTTTGTCTCATTTTTGGCACGAACATAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* * ** *
208328 AAAAATTGGTGAGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCCTGTCCCCTTATAAG
131 AAAAATTGATG-GAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAG
* * * *
208393 AAGACTATGTTGATGGTGCCTAATTCTAAAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTC
195 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
208458 TTATTTAAGAGAC-AACTTTGATTCGATCAATAACGGTGGAAAGGCAAGCTTCTCTTGCGACACC
260 TTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACC
* *
208522 AAAGCATCAATGCCATGTATCCTAATGAAAGGAATGTGATTTTGGTTCCTAATCTTGAAAAGAAT
325 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
* *
208587 GGAGACTATTACGAGAATCAATGCATGTCTCATTTAAAGTGTAAACTTTGATTTTATGGAAAATA
390 GGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATA
*
208652 AGGCAAATAAAAGATTTTC-AT
455 AGGCAAAGAAAAGA-TTTCAAT
** *
208673 GCAAAAGAAAACCATCAATATCATGCATCC-AGATGAGAAGAATGTGTTTATAGTGCCTAATCAT
1 GCAAAAGAAAACCATCAATATCATTTATCCTA-ATGAGGAGAATGTGTTTATAGTGCCTAATCAT
* *
208737 GAAATGAAAGAAGATCCTTACTAGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTA
65 GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTA
* * * * * ** *
208802 CGAAAATTGGTGTGAAGGAAGCATATCTTGCGAAACCAAAGCATCAATATAATGTATCCTTATAA
130 CAAAAATTGATG-GAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGA
* *
208867 GGAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGCATTCATGTTTGT
194 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * *
208932 CTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGATAGGCTTCTTTTGCGATCA
259 CTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGA-CA
* * * * *
208997 -CAAAGCATCATTGTCATGTATCCTAATGAAGGGAATGTCTTTTTGGTTCCCAATCTTAAAAAGA
323 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGA
** * * * *
209061 ACAGAGACTTTTACGGGAATCAATGCATGTCTCATTTAAAGTACGAACTTTGATTTTAAGGAAAA
388 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAA
209126 TAAGGCAAAGAAAAGATTTTC-AT
453 TAAGGCAAAGAAAAGA-TTTCAAT
*
209149 GCAAAAGAAAACCATCAATATCATTTATCCTAAAGCA-GAGAATGTGTTTATAGTGCCTAATCAT
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATAGTGCCTAATCAT
* * * * * * *
209213 GAAATGAATGAAGATCCCTACAAGAATCCATGTTTGTCTCATTTG-CGCAATGAACTCATACTTT
65 GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGC-ACGAACTTAGAATTT
* * * * *
209277 ACGCAAAA-TGGTGGGAAGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCATGTATCCATAT
129 AC-AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTAT
* * * *
209341 AAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAATATGAGTATTCATGTTT
192 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * *
209406 GTCTCATTTAAGAGAC-AACTGTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGGC
257 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGAC
*
209470 ACCAAAGCATTAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
322 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
* ** * *
209535 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACACTGATTGTAAGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAA
**
209600 ATAAGGCAAAGAAAAGATTTTGAT
452 ATAAGGCAAAGAAAAGATTTCAAT
* *
209624 GCAAAAGAAAACCATCAATACCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
* * * * * *
209689 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTAATTTGAGGAATGAACTTATACTTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* *
209754 AAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATA-CCATGTAT-TTGTATG
131 AAAAATT-GATGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCC-TGTATCCT-TATG
* * *
209817 AGAAGTCTATGTTTATGGTGCCTAATCCAGAAAAGAA-GGTGGATTAGTATGAGTATTCATCTTT
193 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG-GGATTAGTATGAGTATTCATGTTT
* *
209881 GTCTTATTTAAGAGACAAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTATGAC
257 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGAC
* * *
209946 ACCAAAGCAACATTGTCATGTGTCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
322 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
* * *
210011 AATGGAGACTTTTATGAGAATCAATGCATGTTTCTTTTAAAGTGCAAACTTTGATTTTATGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAA
210076 ATAAGGCAAAGAAAAGATTTCAAT
452 ATAAGGCAAAGAAAAGATTTCAAT
*
210100 GCAAAAG-AAACCTATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCAT
1 GCAAAAGAAAACC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAT
**
210164 GAAATGAATGAAGATCCTTACTAGAATCCATGTTCCTCTCATTTGAGGCACGAACTTAGAATTTA
65 GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTA
* *
210229 CAAAAATTGATAGGAAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATG
130 CAAAAATTGAT-GG-AAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATG
* * * *
210294 AGAAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGTGGATTAGTATGAGTATTCATCTTTG
193 AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* *
210359 TCTTGTTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACA
258 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACA
* *
210424 CCAAAGCAACAATG-CATGTATCCTAATGAAAGCAAATGTGTTTTTGGTTCCTAATCTTGAAAAG
323 CCAAAGCATCAATGTCATGTATCCTAATGAAAG-GAATGTGTTTTTGGTTCCTAATCTTGAAAAG
* *
210488 AATGGAGACTTTTACGAGAATCAATGCATGTTTCTTTTAAAGTGCAAACTTTGATTTTATGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAA
210553 ATAAGGCAAAGAAAAGATTTCAAT
452 ATAAGGCAAAGAAAAGATTTCAAT
*
210577 GCAAAAG-AAACCTATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCAT
1 GCAAAAGAAAACC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAT
* *
210641 GAAATGAATGAAGATCCTTACTAGAATCCATGTTTTTCTCATTTGAGGCATGAACTTAGAATTTA
65 GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTA
* * *
210706 CAAAAATTGATCGGAA-ATAAGCATTTCTTGTGAAACCAAATCATCAATATCCTGTATCCTTATG
130 CAAAAATTGAT-GGAAGA-AAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATG
* * *
210770 AGAAGACTAAGTTTATGGTGCCTAAT-CTAGAAAAGAATGGGGATTGGTACGAGTATTCATGTTT
193 AGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* *
210834 GTCTTATTTAGGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTATGAC
257 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGAC
* * * * *
210898 ACCAAAGCAACATTGTCATGTGTCCTAATGAAAGGAATGTGTTTTTGGTTCCAAATCATGAAAAG
322 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAG
* * * *
210963 AATGGAGACTTTTATGAGAATCAATGCTTGTTTCTTTTAAAGTGCAAACTTTGATTTTATGGAAA
387 AATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAA
* *
211028 ATAAGGTAAAGAAAAGATTTCGAT
452 ATAAGGCAAAGAAAAGATTTCAAT
* * * *
211052 GCAAAAGAAAACAATCAATACCATTTATCCTAATGAGGATAATGTGTTCATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
* * * *
211117 AAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTAATTTGAGGAATGAACTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* *
211182 AAAAATTGATAGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
131 AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAG
* * * *
211247 AAGACTAAGTTTATGGTGCCTAATCCGGAAAAGAATGTGGATTAGTATGAGTATTCATCTTTGTC
195 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
211312 TTGTTTAAGAGACAAACTTTGATTCTATCAATAACGGAGGGAAGACAAGCTTCTCTTGTGACACC
260 TTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACC
* * *
211377 AAAGCAACATTATCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
325 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
*
211442 GGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATA
390 GGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATA
*
211507 AGGTAAAGAAAAGATTTCAAT
455 AGGCAAAGAAAAGATTTCAAT
*
211528 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
*
211593 AAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* *
211658 AAAAATTGATAGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
131 AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAG
* * * * *
211723 AAGACGAAGTTTATGGTGCCTAATCCGGAAAAGAATGTGGATTAGTATGAGTATTCATCTTTGTC
195 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
211788 TTGTTTAAGAGACAAACTTTGATTCTATCAATAACGGAGGGAAGACAAGCTTCTCTTGTGACACC
260 TTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACC
* * * * *
211853 AAAGCAACATTATCTTGTATCCTAATGAAAGGAATGTATTTTTGGTTCCTAATCTTGAAAAGAAT
325 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
*
211918 GGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATA
390 GGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATA
*
211983 AGGTAAAGAAAAGATTTCAAT
455 AGGCAAAGAAAAGATTTCAAT
*
212004 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
*
212069 AAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* *
212134 AAAAATTGATAGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCCTGTATCCTTATGAG
131 AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAG
* * * * *
212199 AAGACGAAGTTTATGGTGCCTAATCCGGAAAAGAATGTGGATTAGTATGAGTATTCATCTTTGTC
195 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * *
212264 TTGTTTAAGAGACAAACTTTGATTCTATCAATAACGGAGGGAAGACAAGCTTCTCTTGTGACACC
260 TTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACC
* * * * *
212329 AAAGCAACATTATCTTGTATCCTAATGAAAGGAATGTATTTTTGGTTCCTAATCTTGAAAAGAAT
325 AAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAAT
*
212394 GGAGACTTTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATA
390 GGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATA
*
212459 AGGTAAAGAAAAGATTTCAAT
455 AGGCAAAGAAAAGATTTCAAT
*
212480 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
*
212545 AAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* * * *
212610 AAAAATTGATAGGAAAAAAGCGTTTCTTGTGAAACCAAATCATCAATATCCTGTATCATTATGAG
131 AAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAG
* * * *
212675 AAGACTAAGTTTATGGTGCCTAAT-CTAGAAAAAAATGGGGATTGGTATGAGTATTCATATTTGT
195 AAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * **
212739 CTTATTT-A-AG--------TGA--CAATCAATAAGGGTGGAAAGACAAGCTTCCCCTACGACAC
259 CTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACAC
*
212792 CAAAGCATCAATGTCATGTATCCTAATCAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
324 CAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAA
* * * * *
212857 TGGAGACTTTTACAAGAAACAATGCATGTCTCATTTAAAGTACAAACTTTTATTTTAAGGAAAAT
389 TGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAAT
*
212922 AAGGTAAAGAAAAGATTTCAAT
454 AAGGCAAAGAAAAGATTTCAAT
*
212944 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATG
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
*
213009 AAATGAATGAAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACGAACTTAGAATTTAC
66 AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
* * ** * *
213074 AAAAATT-AAGCGAAAGAAAGCGTTTCTTACGAAACCAAATAATCAATATCATGTATCTTTATGA
131 AAAAATTGATG-G-AAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGA
* *
213138 GAAGACTATGTTTATGGTGCCTAATCCGGAAAAGAATGTGGG-TTAGTATGAATATTCATGTTTG
194 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG-GGGATTAGTATGAGTATTCATGTTTG
* * * *
213202 TCTTATTTAAGAGACAAACTTCGATTCCATCAATAACGGTGGAAAGACAAGCTTCTCTTGCGACC
258 TCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACA
* *
213267 CCAAAGCAACATTGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGA
323 CCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGA
* * * * *
213332 ATGGAGACTTTTACGACAATCAATGCATGTCTCATTTAAAGTGCAGAC-----TTTCA-CG-CAA
388 ATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAA
**
213390 -AA-G---A-AAACCA--TCAAT
453 TAAGGCAAAGAAAAGATTTCAAT
** *** * * ** * * *** ** *
213405 --ATCATTTATCC-T--A-ATGA-GGA---GAATG-TGTTTATAGTGCCTA-A-T-CATGAA--A
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAAT-GTGTTTATAGTGCCT-AATCA
* *
213454 TG-A----ATGAAGATCCTTAC-AGGAATCCATGCTTGTCTCATTTGAGGCATGAACTTAGAATT
64 TGAAATGAATGAAGATCCTTACTA-GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATT
* * * * *
213513 TACGAAAATTGGTGCTAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTAT
128 TACAAAAATTGATG-GAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTAT
* * * * *
213578 TAGAAGACTATGTTTATGGTGCTTAATCC-AAAAAGAATGTGGATTAGTCTGAGTATTCATGTTT
192 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * *
213642 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAATGGTGGAATGAAAACCTTCTCTTGTGAC
257 GTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGAC
* * * * *
213707 ACCAAAGCATCAATGTCATGCATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATGTT-AGAAA
322 ACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGA-AAA
* * * *
213771 GAATGGAGACTTTTATGAGAATCAATGCATGTCTCATTTAATGTACAAACTTTGATTTTAAGGAA
386 GAATGGAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAA
**
213836 AACGAGGCAAAGAAAAGATTTTC-AT
451 AATAAGGCAAAGAAAAGA-TTTCAAT
* * *
213861 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGAAGAATGTGTTTATAGTTTCCTAATCAC
1 GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG-TGCCTAATCAT
** * *
213926 GAAATGAATGAAGATCCTTACTAGAATTTATGTCTGTCTGATTTGAGGCACGAACTTAGAATTTA
65 GAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTA
* * * * *
213991 CAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATGTCATGTATCCTTATTA
130 CAAAAATTGAT-GGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGA
* * *
214056 GAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCAGGTTTGT
194 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
214121 CTTATTTAAGAGACAAACTTTG
259 CTTATTTAAGAGACAAACTTTG
214143 TGATGACAAC
Statistics
Matches: 7046, Mismatches: 649, Indels: 278
0.88 0.08 0.03
Matches are distributed among these distances:
440 3 0.00
441 186 0.03
442 131 0.02
443 2 0.00
446 5 0.00
447 4 0.00
448 4 0.00
449 4 0.00
450 5 0.00
451 8 0.00
453 1 0.00
454 5 0.00
455 3 0.00
456 3 0.00
457 2 0.00
458 6 0.00
459 6 0.00
461 6 0.00
462 40 0.01
463 80 0.01
464 722 0.10
465 6 0.00
466 15 0.00
467 4 0.00
468 3 0.00
469 5 0.00
470 4 0.00
471 6 0.00
472 3 0.00
473 2 0.00
474 594 0.08
475 1699 0.24
476 2581 0.37
477 610 0.09
478 275 0.04
479 11 0.00
480 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (475 bp):
GCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATG
AAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTAC
AAAAATTGATGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCCTGTATCCTTATGAGA
AGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
TATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTTCTCTTGTGACACCA
AAGCATCAATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATG
GAGACTTTTACGAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAA
GGCAAAGAAAAGATTTCAAT
Found at i:219175 original size:42 final size:42
Alignment explanation
Indices: 219125--219243 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
219115 TTCTTCTCTC
*
219125 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* * *
219167 GTTCTCCTATCATCCCTCCTCTCTCTACTATCTTTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* * *
219209 CTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
219244 TTGAGGGCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 67 1.00
ACGTcount: A:0.11, C:0.44, G:0.01, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:219185 original size:24 final size:24
Alignment explanation
Indices: 219144--219237 Score: 83
Period size: 24 Copynumber: 4.1 Consensus size: 24
219134 TCATCCCTCC
* * *
219144 TCTCTCTATTATCTCTCCTATCTGT
1 TCTC-CTATCATCCCTCCTATCTCT
219169 TCTCCTATCATCCCTCC--TCTC-
1 TCTCCTATCATCCCTCCTATCTCT
* *
219190 TCTACTATC-T--TTCCTATCTCT
1 TCTCCTATCATCCCTCCTATCTCT
*
219211 CCTCCTATCATCCCTCCTATCTCT
1 TCTCCTATCATCCCTCCTATCTCT
219235 TCT
1 TCT
219238 TTCTCTTTGA
Statistics
Matches: 54, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
18 3 0.06
20 5 0.09
21 15 0.28
22 4 0.07
24 23 0.43
25 4 0.07
ACGTcount: A:0.12, C:0.41, G:0.01, T:0.46
Consensus pattern (24 bp):
TCTCCTATCATCCCTCCTATCTCT
Found at i:219218 original size:12 final size:12
Alignment explanation
Indices: 219158--219234 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 12
219148 TCTATTATCT
* *
219158 CTCCTATCTGTT
1 CTCCTATCTCTC
219170 CTCCTATCATC-C
1 CTCCTATC-TCTC
219182 CTCC--TCTCT-
1 CTCCTATCTCTC
*
219191 CTACTATCT-T-
1 CTCCTATCTCTC
219201 -TCCTATCTCTC
1 CTCCTATCTCTC
219212 CTCCTATCATC-C
1 CTCCTATC-TCTC
219224 CTCCTATCTCT
1 CTCCTATCTCT
219235 TCTTTCTCTT
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
9 12 0.23
10 4 0.08
11 5 0.10
12 28 0.54
13 3 0.06
ACGTcount: A:0.12, C:0.44, G:0.01, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:220253 original size:15 final size:16
Alignment explanation
Indices: 220235--220264 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
220225 GAATTATTGA
220235 TGAAAGAA-CAGAAAT
1 TGAAAGAAGCAGAAAT
220250 TGAAAGAAGCAGAAA
1 TGAAAGAAGCAGAAA
220265 AAAATAACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.07, G:0.23, T:0.10
Consensus pattern (16 bp):
TGAAAGAAGCAGAAAT
Found at i:221381 original size:158 final size:156
Alignment explanation
Indices: 221209--223777 Score: 529
Period size: 158 Copynumber: 16.2 Consensus size: 156
221199 AGAAAGTGTA
* * *
221209 TCTTGCGAATCCAAAGCATTAATATCATGTATCCTTATTAGAAGACTATGTTTATAGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
* *
221274 CTTGAAAAGAATAGAGATTAGTATGAGTATTCATGGTTGTCTTATTTAGGAGACAACTTTGATCC
66 CTTGAAAAGAATAGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTAGGAGACAACTTTGAT-C
* *
221339 TATCAACAACTGTGGAAAGAAAAGCTTC
129 TATCAAAAACTATGGAAAGAAAAGCTTC
* * * * * * * * * * *
221367 TCTTGCGACACCAAAGCATCAATGTCAAGTAT-CATAATAAAAGGAATGTGTTTTTGGTTCCCAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA-GAATATGTTTATAGTGCCTAA
* * * * * ** * * * *
221431 TCTTGAAAATAATGGAGACTT-TTACAAGAATCAATGCATGTCTCATATA-AAGTACAAACTTTT
65 TCTTGAAAAGAATAGAGA-TTAGTACGAGATTC-ATGTTTGTCTTATTTAGGAG-AC-AACTTTG
* * * * *
221494 AT-T-TGAAGGAAAATAAGGCAATGAAAAGATT-
126 ATCTATCAA--AAACTATGG-AAAGAAAAGCTTC
* * ** * * * * * *
221525 TCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTAA
1 T-CTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAA
** * ** * * * *
221590 TCACGAAATGAAT-GAAGATTCCTACGAGATCCCATGTTTGTCTTATTTGAGCA-ATGAAC--TC
65 TCTTGAAAAGAATAG-AGATTAGTACGAGAT-TCATGTTTGTCTTATTT-AGGAGA-CAACTTTG
* * * * *
221651 ATACTTTACAAAAA-T-TGGTAGGAAGCAAGCGTA
126 AT-CTAT-CAAAAACTATGGAAAGAA--AAGCTTC
* * *
221684 TCTTACGAAACCAAAGCATCAATATCATGTATCCTTATCAGAAGACTATGTTTATAGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
* * * *
221749 CCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTGGGAGACAACTTTGATTC
66 CTTGAAAAGAATAGAGATTAGTACGAG-ATTCATGTTTGTCTTATTTAGGAGACAACTTTGA-TC
*
221814 TATCAATAAC-ATGGAAAGAAAAGCTTC
129 TATCAAAAACTATGGAAAGAAAAGCTTC
* * * * * * * * * * *
221841 TCTTGTGATACCAAAGCATCAATGTCATGTAT-C-TAATAAAAGGAATGTTTTTTTGGTTCCCAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA-GAATATGTTTATAGTGCCTAA
* * * ** * *
221904 TCTTGAAAAGAATAGAGACTT-CTACAAGAATCAATGCATGTCTCATTTA-AAGTACAAACTTTG
65 TCTTGAAAAGAATAGAGA-TTAGTACGAGATTC-ATGTTTGTCTTATTTAGGAG-AC-AACTTTG
* * * * *
221967 AT-T-TTAAGGAAAATAAGGTAATGAAAAGATT-
126 ATCTATCAA--AAACTATGG-AAAGAAAAGCTTC
* ** * * * * * *
221998 TCCATGATAAA-GAAAACTATCAATATCATTTATCCTAATGAGGAAG-ATGTGTTTATAGTGCCT
1 T-CTTGCGAAACCAAAGC-ATCAATATCATGTATCCTTATTA-GAAGAATATGTTTATAGTGCCT
* * * *
222061 AATCATGAAATA-AAT-GAAGATCCTTAGTA-GAG-TCCATGTTTGTCTCATTTGAGG-TACGAA
63 AATCTTGAAA-AGAATAG-AGA---TTAGTACGAGATTCATGTTTGTCTTATTT-AGGAGAC-AA
* * * ** *
222121 CTTAGAATTTA-CAAAAATTGGCGGGAAG-AAAGCATT-
121 CTTTG-ATCTATCAAAAACT-ATGGAAAGAAAAGC-TTC
* * * * * *
222157 TCCTGCAAAACCAAAGCATCAATATCATGTATCGTTACTAGAAGACTATGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
** * ** * * *
222222 C-CAAAGAAGAA-AGTGGATTAGTATAAGTATTCATGTTTGCCTCATTTAAGAGACAAACTTTGA
66 CTTGAA-AAGAATAG-AGATTAGTACGAG-ATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGA
* * *
222285 TTCTATCAATAA-TGGTGGAATGAAAAGCTTC
127 -TCTATCAAAAACT-ATGGAAAGAAAAGCTTC
* * * * * * * * * *
222316 TCTTGTGACACCAAAGCATCAATGTCATGCATCC-TAATAAAAGGAATGTGTTCT-TGGTTCCAA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA-GAATATGTT-TATAGTGCCTA
** * * * ** * *
222379 ATGAT-AGAAAGAATGGAGACTT-TTACGAGAATCAATGCATGTCTCATTTA-AAGTACAAACTT
64 ATCTTGA-AAAGAATAGAGA-TTAGTACGAGATTC-ATGTTTGTCTTATTTAGGAG-AC-AACTT
* * * * *
222441 TGAT-TTTAAGGAAAACGA-GGCAAAGAAAAGATTT
124 TGATCTATCA--AAAACTATGG-AAAGAAAAGCTTC
* * ** * * * * * *
222475 TCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
** * * ** * *
222540 CACGAAGTA-AAT-GAAGATCCA-TATTAGAATCAATGTTTGTCTCATTT--GACGTACAAACTT
66 CTTGAA-AAGAATAG-AGAT-TAGTACGAGATTC-ATGTTTGTCTTATTTAGGA-G-AC-AACTT
* * * ** *
222600 AGAATTTA-CAAAAATTGGCGGGAAG-AAAGCGTT-
124 TG-ATCTATCAAAAACT-ATGGAAAGAAAAGC-TTC
* * * * *
222633 TCTTGCGAAACCAAAGTATCAATATCATGTATCATTATTAGAAGACTATATTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
** * * *
222698 CCAGAAAAGAAT-GTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
66 CTTGAAAAGAATAG-AGATTAGTACGAG-ATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGA-
* * * *
222762 TCTATTAATAA-TGGTGGAATGAAAAGCTTC
127 TCTATCAAAAACT-ATGGAAAGAAAAGCTTC
** ** * * * * * * * *
222792 TCTTATGACGCCAAAGCATCAATGTCATATATCC-TAAT-GAAGGGAATGTGTTTTTGGTTCCCA
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA--GAATATGTTTATAGTGCCTA
* * * * * * ** * ** *
222855 ATCTTGGAAAGAATTGAAACTT-TTATGAGAATCAATGCATGTCTCATTTAAAATACAAACTTTG
64 ATCTTGAAAAGAATAGAGA-TTAGTACGAGATTC-ATGTTTGTCTTATTTAGGAGAC-AACTTTG
* * * * *
222919 AT-T-TTAAGGAAAATAAGGCAAAAAAAAGATT-
126 ATCTATCAA--AAACTATGG-AAAGAAAAGCTTC
* ** * * * * * ** * *
222950 TGCATGC-AAAAAAAACCCATCAAAATCTTTTATCCTAACGAGGAGAATGTGTTTATAGTGCCTA
1 T-CTTGCGAAACCAAA-GCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTA
* * *** * * *
223014 ATCATGAAATGAAT-GAAGATCCTTACTG-GAATCCATGCTTGTCTCATTTGAGGCATG--AACT
64 ATCTTGAAAAGAATAG-AGATTAGTAC-GAG-ATTCATGTTTGTCTTATTT-AGG-A-GACAACT
* * * * *
223075 TAGAATTTA-CAAAAATTGGTCGG-AAG-AAAG-TGTT
123 TTG-ATCTATCAAAAACT-AT-GGAAAGAAAAGCT-TC
** * * *
223109 TCTTGCGAAACCAAAGCATCAATATCACATATCCATATTAGAAGACTATGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
** * * * * * *
223174 CCAGAAAATAAT-GTGGATTAGTATGAGTATTCAGGTTTGTCTTGTTTAAGAGACAAACTTTGAT
66 CTTGAAAAGAATAG-AGATTAGTACGAG-ATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGA-
* * *
223238 TCTATCAATAA-TGGTGGAAAGCAAAGCTTC
127 TCTATCAAAAACT-ATGGAAAGAAAAGCTTC
* * * * * * * * * *
223268 TCTTGTGACACCAAAGCGTCAGTGTCATGTATCC-TAATA-AAGGGAATGTGTTCT-TGGTTCCC
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAA--GAATATGTT-TATAGTGCCT
* * * * *** * *
223330 AATATT-AGAAAGAATGGAGACTT-TTACGAGAATCAATGCACGTCTCATTTA-AAGTACAAACT
63 AATCTTGA-AAAGAATAGAGA-TTAGTACGAGATTC-ATGTTTGTCTTATTTAGGAG-AC-AACT
* * * * * *
223392 TTGAT-TTTAAGGAAAATTA-GCAATGAAAAGATT-
123 TTGATCTATCA--AAAACTATGGAAAGAAAAGCTTC
* * ** * * * * * *
223425 TCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
1 T-CTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAA
* * *** * * *
223490 TCATGAAATGAAT-GAAGATCCTTACTG-GAATCAATGCTTGTCTCATTTGAGGCATG--AACTT
65 TCTTGAAAAGAATAG-AGATTAGTAC-GAGATTC-ATGTTTGTCTTATTT-AGG-A-GACAACTT
* * * * * *
223551 AGAATTTA-CAAAAATTGGTGGGAAG-AAAG-TGTT
124 TG-ATCTATCAAAAACT-ATGGAAAGAAAAGCT-TC
* * * *
223584 TCTTGCGAAACTAAAGCATCAATATCATATATCCTTATTAGAAGACTATGTTTATGGTGCCTAAT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
** * * *
223649 CCAGAAAAGAAT-GTGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
66 CTTGAAAAGAATAG-AGATTAGTACGAG-ATTCATGTTTGTCTTATTTAGGAGAC-AACTTTGA-
** * *
223713 TCTATCAGTAA-TGGTGGAATGAAAAGCTTC
127 TCTATCAAAAACT-ATGGAAAGAAAAGCTTC
* * * *
223743 TCTTGTGACACCAAAGCATCAATGTCATGCATCCT
1 TCTTGCGAAACCAAAGCATCAATATCATGTATCCT
223778 AATAAAAGGA
Statistics
Matches: 1722, Mismatches: 510, Indels: 357
0.67 0.20 0.14
Matches are distributed among these distances:
154 3 0.00
155 19 0.01
156 67 0.04
157 121 0.07
158 737 0.43
159 695 0.40
160 54 0.03
161 23 0.01
162 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (156 bp):
TCTTGCGAAACCAAAGCATCAATATCATGTATCCTTATTAGAAGAATATGTTTATAGTGCCTAAT
CTTGAAAAGAATAGAGATTAGTACGAGATTCATGTTTGTCTTATTTAGGAGACAACTTTGATCTA
TCAAAAACTATGGAAAGAAAAGCTTC
Found at i:222534 original size:476 final size:474
Alignment explanation
Indices: 220854--224562 Score: 5269
Period size: 476 Copynumber: 7.8 Consensus size: 474
220844 GGTTTTCATC
* * * *
220854 ACTTTGATTCTATCAATAATGGTGGAAAGAGAAGCTTCTCTTGTCACCCCAAAGCAACAATGTCA
1 ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
* *
220919 TGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAG
66 TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTTG-AAAGAATGGAGACTTTTACGAG
220984 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
130 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
* * * *
221049 TTTCATTCAAAAGAAAACCATCAATATCTTTTATCCTAAAGAGGAGAATGTGTTTATAATGCCTA
195 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * ** *
221114 ATCATGAAATGAATGAAGATCCCTACAAGAATCCCTATTTGTCTCATTTGA-GCAATGAACCCAT
260 ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGC-ACGAACTTAG
* * * * * *
221178 ACTTTACACAAATTGGTGGGAAGAAAGTGTATCTTGCGAATCCAAAGCATTAATATCATGTATCC
324 AATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* ** *
221243 TTATTAGAAGACTATGTTTATAGTGCCTAATCTTGAAAAGAATAG-AGATTAGTATGAGTATTCA
389 TTATTAGAAGACTATGTTTATGGTGCCTAATC-CAAAAAGAAT-GTGGATTAGTATGAGTATTCA
* *
221307 TGGTTGTCTTATTTAGGAGAC-A
452 TGTTTGTCTTATTTAAGAGACAA
* * *
221329 ACTTTGATCCTATCAACAACT-GTGGAAAGAAAAGCTTCTCTTGCGACACCAAAGCATCAATGTC
1 ACTTTGATTCTATCAATAA-TGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTC
* * * * *
221393 AAGTATCATAATAAAAGGAATGTGTTTTTGGTTCCCAATCTTGAAAATAATGGAGACTTTTACAA
65 ATGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTTG-AAAGAATGGAGACTTTTACGA
* * * *
221458 GAATCAATGCATGTCTCATATAAAGTACAAACTTTTATTTGAAGGAAAATAAGGCAATGAAAAGA
129 GAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA
* *
221523 TTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCCT
194 TTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * * *
221588 AATCACGAAATGAATGAAGATTCC-TACGAG-ATCCCATGTTTGTCTTATTTGA-GCAATGAACT
259 AATCATGAAATGAATGAAGA-TCCTTACTAGAAT-CCATGTTTGTCTCATTTGAGGC-ACGAACT
* * * * * * *
221650 CATACTTTACAAAAATTGGTAGGAAGCAAGCGTATCTTACGAAACCAAAGCATCAATATCATGTA
321 TAGAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTA
* * *
221715 TCCTTATCAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAATAG-GGATTAGTATGAGTAT
386 TCCTTATTAGAAGACTATGTTTATGGTGCCTAATCC-AAAAAGAAT-GTGGATTAGTATGAGTAT
**
221779 TCATGTTTGTCTTATTTGGGAGAC-A
449 TCATGTTTGTCTTATTTAAGAGACAA
** *
221804 ACTTTGATTCTATCAATAA-CATGGAAAGAAAAGCTTCTCTTGTGATACCAAAGCATCAATGTCA
1 ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
* * * * *
221868 TGTAT-CTAATAAAAGGAATGTTTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTTCTACAAG
66 TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTTG-AAAGAATGGAGACTTTTACGAG
* *
221932 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGTAATGAAAAGAT
130 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
* *
221997 TTCCATG-ATAAAGAAAACTATCAATATCATTTATCCTAATGAGGA-AGATGTGTTTATAGTGCC
195 TTTCATGCA-AAAGAAAACCATCAATATCATTTATCCTAATGAGGAGA-ATGTGTTTATAGTGCC
* * * *
222060 TAATCATGAAATAAATGAAGATCCTTAGTAGAGTCCATGTTTGTCTCATTTGAGGTACGAACTTA
258 TAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
222125 GAATTTACAAAAATTGGCGGGAAGAAAGCATTTCCTGCAAAACCAAAGCATCAATATCATGTATC
323 GAATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATC
* * * *
222190 GTTACTAGAAGACTATGTTTATGGTGCCTAATCCAAAGAAGAAAGTGGATTAGTATAAGTATTCA
388 CTTATTAGAAGACTATGTTTATGGTGCCTAATCCAAA-AAGAATGTGGATTAGTATGAGTATTCA
* *
222255 TGTTTGCCTCATTTAAGAGACAA
452 TGTTTGTCTTATTTAAGAGACAA
*
222278 ACTTTGATTCTATCAATAATGGTGGAATGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
1 ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
* * * *
222343 TGCATCCTAATAAAAGGAATGTGTTCTTGGTTCCAAATGATAGAAAGAATGGAGACTTTTACGAG
66 TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAAT-CTTGAAAGAATGGAGACTTTTACGAG
**
222408 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAACGAGGCAAAGAAAAGAT
130 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
222473 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
195 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * * * * * * *
222538 ATCACGAAGTAAATGAAGATCCATATTAGAATCAATGTTTGTCTCATTTGACGTACAAACTTAGA
260 ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
222603 ATTTACAAAAATTGGCGGGAAGAAAGCGTTTCTTGCGAAACCAAAGTATCAATATCATGTATCAT
325 ATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
*
222668 TATTAGAAGACTATATTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATG
390 TATTAGAAGACTATGTTTATGGTGCCTAATCCA-AAAAGAATGTGGATTAGTATGAGTATTCATG
222733 TTTGTCTTATTTAAGAGACAA
454 TTTGTCTTATTTAAGAGACAA
* * * *
222754 ACTTTGATTCTATTAATAATGGTGGAATGAAAAGCTTCTCTTATGACGCCAAAGCATCAATGTCA
1 ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
* * * * * * *
222819 TATATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGGAAAGAATTGAAACTTTTATGAG
66 TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTT-GAAAGAATGGAGACTTTTACGAG
* *
222884 AATCAATGCATGTCTCATTTAAAATACAAACTTTGATTTTAAGGAAAATAAGGCAAAAAAAAGAT
130 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
* * * *
222949 TTGCATGCAAAA-AAAACCCATCAAAATCTTTTATCCTAACGAGGAGAATGTGTTTATAGTGCCT
195 TTTCATGCAAAAGAAAA-CCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
223013 AATCATGAAATGAATGAAGATCCTTACTGGAATCCATGCTTGTCTCATTTGAGGCATGAACTTAG
259 AATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * **
223078 AATTTACAAAAATTGGTCGGAAGAAAGTGTTTCTTGCGAAACCAAAGCATCAATATCACATATCC
324 AATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCC
* * *
223143 ATATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAATAATGTGGATTAGTATGAGTATTCAG
389 TTATTAGAAGACTATGTTTATGGTGCCTAATCCA-AAAAGAATGTGGATTAGTATGAGTATTCAT
*
223208 GTTTGTCTTGTTTAAGAGACAA
453 GTTTGTCTTATTTAAGAGACAA
* * *
223230 ACTTTGATTCTATCAATAATGGTGGAAAGCAAAGCTTCTCTTGTGACACCAAAGCGTCAGTGTCA
1 ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
* *
223295 TGTATCCTAATAAAGGGAATGTGTTCTTGGTTCCCAATATTAGAAAGAATGGAGACTTTTACGAG
66 TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTT-GAAAGAATGGAGACTTTTACGAG
* * *
223360 AATCAATGCACGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATTA-GCAATGAAAAGAT
130 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
*
223424 TTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
195 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * * *
223489 ATCATGAAATGAATGAAGATCCTTACTGGAATCAATGCTTGTCTCATTTGAGGCATGAACTTAGA
260 ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
223554 ATTTACAAAAATTGGTGGGAAGAAAGTGTTTCTTGCGAAACTAAAGCATCAATATCATATATCCT
325 ATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCT
223619 TATTAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGTGGATTAGTATGAGTATTCATG
390 TATTAGAAGACTATGTTTATGGTGCCTAATCCA-AAAAGAATGTGGATTAGTATGAGTATTCATG
223684 TTTGTCTTATTTAAGAGACAA
454 TTTGTCTTATTTAAGAGACAA
* *
223705 ACTTTGATTCTATCAGTAATGGTGGAATGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
1 ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
* *
223770 TGCATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATGTTAGAAAGAATGGAGACTTTTACGAG
66 TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTT-GAAAGAATGGAGACTTTTACGAG
* *
223835 AATCAATGCATGTCTCATTTAAAGTATAAACTTTGATTTTAAGGAAAATTAGGCAAAGAAAAGAT
130 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
223900 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
195 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
*
223965 ATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
260 ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
224030 ATTTACAAAAATT-ATGGGAAGAAAGCGTTTCTTGCAAAACC-AAGTCATCAATATCCTGTATCC
325 ATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAG-CATCAATATCATGTATCC
* * * * * * *
224093 ATGTAAGATGGCTATGTTTATGGTGCTTAATCCTAAAAAGAATG-GGATTAGTATGAGTATT-AA
389 TTATTAGAAGACTATGTTTATGGTGCCTAATCC-AAAAAGAATGTGGATTAGTATGAGTATTCAT
* * *
224156 GATTGCCTTATTTAAAAGACAA
453 GTTTGTCTTATTTAAGAGACAA
* * ** * * * * *
224178 ATTTTGATTTTATCGTTAACGTTGGAAATAAAAGCCTCTCTTGCGACACCAAAGCATCAATGTCA
1 ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
* * * * *
224243 TATATCCTAATGAAGGGAATGTGTTCTTGGCTCCCAATCTTGAGAAGAATGGAGACTTTTATGAG
66 TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTTGA-AAGAATGGAGACTTTTACGAG
* * * ** * *
224308 AATCAATGCATGTTTCATTTAATGTATAAACTTTGATTTTAAGGAAAACGAGGCAAGGAAACGAT
130 AATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGAT
224373 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
195 TTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * **
224438 ATCATGAAATGAATGAAGATCCTTGCTAGAATCCATGTTTCTCTTTTTTGAGGCACGAACTTAGA
260 ATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* * *
224503 ATTTACAAAAATTGATGGGAAGAAAGCATTTCTTGCGAAACCAAACCATCAATATCATGT
325 ATTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGT
224563 TTTGTTTTGA
Statistics
Matches: 2938, Mismatches: 268, Indels: 57
0.90 0.08 0.02
Matches are distributed among these distances:
472 10 0.00
473 672 0.23
474 128 0.04
475 1016 0.35
476 1106 0.38
477 6 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
ACTTTGATTCTATCAATAATGGTGGAAAGAAAAGCTTCTCTTGTGACACCAAAGCATCAATGTCA
TGTATCCTAATAAAAGGAATGTGTTCTTGGTTCCCAATCTTGAAAGAATGGAGACTTTTACGAGA
ATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATT
TTCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
TCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAA
TTTACAAAAATTGGTGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTT
ATTAGAAGACTATGTTTATGGTGCCTAATCCAAAAAGAATGTGGATTAGTATGAGTATTCATGTT
TGTCTTATTTAAGAGACAA
Found at i:226656 original size:476 final size:476
Alignment explanation
Indices: 224583--233651 Score: 7312
Period size: 476 Copynumber: 18.9 Consensus size: 476
224573 GAAGACTATG
* * *
224583 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CTCAATTTTTAAAAAAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCT-AATCTTGAAAAGAATGGAGACT
* * * * * * * * * * * *
224647 GTCACAAGAATCAATGCTTGCCTTA-TTGAAGGGACAAACTTTAATTTAAAGTAAAATAGGGAAA
65 TTTACAAGAATCAATGCATGTCTCATTTAAAGTG-CAAACTTTGATTTTAAGGAAAATAAGGCAA
* * * *
224711 AGAAAAGATTTTCGTGCGAAAGAAAACCATCAATATCATTTATGCTAATGAGGAGAATGTGTTTA
129 AGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * *
224776 TAGTGCCTAATCACAAAACGAATGAAGATCATTTAGCTAGAATCCCTGTTTGTCTCATTTGAGGC
194 TAGTGCCTAATCACGAAATGAATGAAGATC-GTTA-CTAGAATCCATGTTTGTCTCATTTGAGGA
* * * *
224841 ACAAACTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATCAATA
257 ACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATA
* * * ***
224906 TCATTTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCCGAAAAGAATATCGATTAGTAT
322 TCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTAT
* * *
224971 GAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAATAACGGTGGAAAGACAA
387 GAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAA
*
225036 CCTTCTCTTGCGACACCAAAGCAAT-
452 GCTTCTCTTGCGACACCAAAGC-ATC
* *
225061 ATTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
* ** *
225126 TTACAAGAATCAATGCATGTCTCATCTAAAGAACAAACTTTGATTTTAAGGAAAATTA-GCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* * ** *
225190 AAAAGATTTTCATGCAAAAGAAATCCATCAATATCATGCATCCTGATGAGGAGAATGTGTTTATA
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** * *
225255 GCGCCTAATCGTGAAATGAATGAAGATCCTTAGTAGAATCCATGTTTGTCTCATTTGAGGAACGA
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * * * * *
225320 ACTTAGAATTTAC-AAAATTGGTGTGAAGGAAGCGTATCTTGCGAAACCAAAGCATCAATATAAT
261 ACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCAT
* * * * *
225384 GTATCCTTATAAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAGAATGGGGATTAGTGTGAGA
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGT
* * *
225449 ATTCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGGCTAGCTT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTT
* *
225514 CTTTTGCGACAGCAAAGCATC
456 CTCTTGCGACACCAAAGCATC
* * * **
225535 ATTATCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTAAAAAAGAATGGAGACTT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
** * * ** *
225600 TTACGGGAATCAACGCATGTCTAATTTAAAGTATAAACTTTGATTTTAAGGAAAATAAAGCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* * *
225665 AAAAGATTTTCATGCAAAAGAAAACCATCAATATCATTTATCCTAAAGCGGAGAATGTGTTTATA
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* ** ** *
225730 GTGCCTAATCATGAAATGAATGAAGATCCATACTAGAATCCATGTTTGTCTCATTTGAGGCCCAA
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * * *
225795 ACTTAGAATTTACACAAAA-TGGTGGGACGAAAGCGTATCTTGCGAAACCAAAGCATCAATATCA
261 ACTTAGACTTTACA-AAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * * * *
225859 TGTATCCGTATAAAAAGACTATGTTTATGGTGCCTAATCCGGAAAAGAATAGGGATTAGTATGAG
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAG
* *
225924 TATTCCTGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATCACGGTGGAAAGACAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
* *
225988 TCTCTTGCGACACCAAAGCTTT
455 TCTCTTGCGACACCAAAGCATC
* * * *
226010 AATGTCATGTATCATAATCAAAGGAAAGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
* * * *
226075 TTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACATTGATTGTAAGGAAAATAAGGCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* ** *
226140 AAAAGATTTCGATGCAAAAGAAAAAAATCAATACCATTTATCCTAATGAGGAGAATGTGTTTATA
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * **
226205 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTAATTCGAGGATTGA
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * *
226270 ACTTATACTTTAAAAAAATTGGAGGGAAGAAAGCATTTCTTGCGAAACCAAAGC-TGCAATATCA
261 ACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCAT-CAATATCA
* * * * * * *
226334 TGTATTCATATGAGAAGTCTATGTTTATGGTGCCTAATCCGGAAAAGAATGTGGATTAGTCTAAG
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAG
* *
226399 TATTCATCTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAATAACGGTGGAAAGACAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
* *
226464 TCTCTTGTGACACCAAAGCAAC
455 TCTCTTGCGACACCAAAGCATC
* *
226486 -ATCGTCGTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACT
1 AAT-GTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACT
* * * *
226550 TTTACGAGAATCAATGCATTTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGTAAA
65 TTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAA
**
226615 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGCATTTAT
130 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * * *
226680 AGTGCCTAATCATGAAATAAATGGAGATCCTTACTAGAATCCATGTTTCTCTCATTTGAGGCACG
195 AGTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACG
* * * * *
226745 AACTAAGAATTTACAAAAATT-GATGGGAAAAAAGCGTTTCTTGTGAAACCAAATCATCAATATC
260 AACTTAGACTTTACAAAAATTGGA-GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATC
* * *
226809 CTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTGTGA
324 ATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGA
* *
226874 GTATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAACAGTGGAAAAACAAGC
389 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGC
*
226938 TTCTCTTGCGACACTAAAGCATC
454 TTCTCTTGCGACACCAAAGCATC
* *
226961 AATGTCATGTATCCTAAAGAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
* * *
227026 TTACGAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTTATTTTAAGGAAAATAAGGCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* *
227091 AAAAGATTTCGATGCAAAAGAAAACCATCAATACCATTTATCCTAATGAGGAGAATGTGTTTATA
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
227156 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTAAGTTGAGGAATGG
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * *
227221 ACTTATACTTTTCAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCTTCAATATCAT
261 ACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCAT
* *
227286 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTTGTATAAGT
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGT
* * * * * *
227351 ATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATAT-TATCAATAACGTTTGAAGGAAAAGCT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAACGGTGGAAAGACAAGCT
*
227415 TCTCTTGGGACACCAAAGCATC
455 TCTCTTGCGACACCAAAGCATC
* * *
227437 AATGTCATGTTTCCTAGTGAAGGGAATGTGTTTTTGGTTGAC-AATCTTGAAAAGAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CCTAATCTTGAAAAGAATGGAGACT
* * *
227501 TTTATAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTTTAAGGAAAATAAGGTAAA
65 TTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAA
* * *
227566 GAAAA-ATTTTCCATGCAAAAGAAAACCATCAATAACATTTATCCTAACGCGGAGAATGTGTTTA
130 GAAAAGA-TTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
*** * * * * * *
227630 TAGTGCCTAATCACGAAATGAATGAAGATCCCGACAAGAATCCGTGTTTGTCTCGTTTAAGCAAT
194 TAGTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAAC
* * * * * * *
227695 GAACTCATACTTTACACAAATTGGTGAGAAGAAAGCGTATCTTGCAAAACCAAAGCATCAATATC
259 GAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATC
* * * * *
227760 ATGTATCCATATAAGAAGACTAAGTTTATGGTGCCTAATCTAGAAAAGAATGGGGAATAGTATGA
324 ATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGA
*
227825 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAGGC
389 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGC
* * *
227890 TTCTCTTGTGACCCCAAAGCAAC
454 TTCTCTTGCGACACCAAAGCATC
* * * *
227913 ATTGTCCTGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
* * *
227978 TTACGACAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTATGGAAAATAAGGCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* *
228043 AAAAGATTTCCATGCAAAAGAAAACCATCAATATTATTTATCCTAATGAGGAGAATGCGTTTATA
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
** * * * * * *
228108 GTGCCTAATCATTAAATGAATGAAGATCCTTGCTAGATTCCATGTTTCTCTCATTTGAGGCATGA
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * * * *
228173 ACTTAGAATTTACAAAAA-TCGATGGGAAAAAAGCGTTTCTTGCGAAACCAAATCATCAATATCC
261 ACTTAGACTTTACAAAAATTGGA-GGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * *
228237 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGCGATTCGTATGAG
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAG
* ** * *
228302 TATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATAT-TATCAATAACCTTGGAAGGAAAAGC
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAACGGTGGAAAGACAAGC
228366 TTCTCTTGCGACACCAAAGCATC
454 TTCTCTTGCGACACCAAAGCATC
* * * * *
228389 AATGTCATGTTTCCTAGTGAAGGGAGTGTGTTTTTGGTTCTTAATCTTGAAAAGAATGGAGACAT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
* *
228454 TTACAAGAATCAATGCATGTCTCATTTAAAGTACAAACTTTGATTGTAAGGAAAATAAGGCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* *
228519 AAAAGATTTCGATGCAAAAGAAAACCATCAATACCATTTATCCTAATGAGGAGAATGTGTTTATA
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
228584 GTGCCTAGTCATGAAATGAATGAAGATCGTTAGTAGAATCCATGTTGGTCTAATTTGAGGAATGA
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * * * *
228649 ACTTATATTTTACAAAAATTGGGGGGAAGAAAACGTTTCTTGCGAAACCAAAGCATCAATATCAC
261 ACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCAT
* * * * *
228714 GTATCCGTATGAGAAGTCTATGTTTATGGTGCCTAATCCGGAAAAGAGTGTGGATTAGTATGAGT
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGT
* * * * * *
228779 ATTCATGTTTGTCTTATTTGAGAGGCAAACTTTGATAT-TATCAATAACGTTGGAAGGAAAACCT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT-TCTATCAATAACGGTGGAAAGACAAGCT
**
228843 TCTCTTGCGATGCCAAAGCATC
455 TCTCTTGCGACACCAAAGCATC
* * * *
228865 AATATCATGTTTCATGATGAAGGGAATGTGTTTTTGGTTCAC-AATCTTGAAAAGAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC-CTAATCTTGAAAAGAATGGAGACT
* * ** * * * * * *** *
228929 CTTACAAGAATCAATGCACGTCTCATTTAAA--G-AAACGCTAATGTCATGTATCCTAATG-AAG
65 TTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAA-
* * * ** * ** * * ** * * ** * *
228990 GGAAAGTGTTTTTGGATCCTAATCTTGGAAACGATGGAGA-CTTTTA-CGAGAATCA--ATGCAT
129 AGAAA-AG-ATTTCCATGC-AA--AAGAAAACCATCAATATCATTTATC-CTAATGAGGA-GAAT
* * * **** * * * * * * *** *
229051 GTCTCATTTAAAGT-AC-AGA-CTTTTATTTAGA-GCAAAATAAGGTA-AAGAAAAGAT-TTCGA
187 G--T-GTTTATAGTGCCTA-ATCACGAAATGA-ATG-AAGAT-CGTTACTAGAATCCATGTTTG-
* *** * * * ** * * *
229110 T-GCAAAAGA-AAAC-AATCAATA-CCATTTATCCTAAA---GA-GG-AGAATGTGTTTATAGTG
244 TCTCATTTGAGGAACGAA-C-TTAGAC-TTTA-CAAAAATTGGAGGGAAGAAAGCGTTTCT--TG
* * * * * * *** * *
229166 CCTAATCACAAATGAATGAAGATCGTTACTAGAATCC--AT-ATTTGTCTAAT-TTGA-GGAATG
303 -CGAAAC-CAAA-GCATCAATATC---A-T-GTATCCTTATGAGAAGACT-ATGTTTATGG--TG
* ** * * * * * ** ***
229226 AACATATACTTTACAAAA-ATTGAAGGGA--AG-A-AAGCATT--T-CTTGT-GAAACCAA-AG-
357 --CCTA-A-TCCAGAAAAGAATG--GGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGA
* * * ** ** * ** ** * * **
229280 CATCAACATCATGTATCCGTATGAGA-AATCTATGTTTATG--GTGC--CTAATCCAGAAAAGAA
416 CA--AAC-T-TTG-ATTC-TATCA-ATAA-CGGTG-GAAAGACAAGCTTCTCTTGC-GACACCAA
* * *
229340 TGTGGATT
471 --AGCATC
* * * * ** * *** * * *
229348 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGGCAAACT-TTCATTCCATCAATAA-CGGTGGA
1 A--AT--G---TCATG--TATCCTAATGAAG-GG-AATGTGTT-TTTGGTTC-CTAATC-TTGAA
* *** * * * * *
229411 AAGACA-AGCTTCTCTTGCGACACCA-AAGCAA--CATTGTCATGTATCCTAATGTAAG-AAA-T
52 AAGA-ATGGAGACT-TT--TACA--AGAATCAATGCA-TGTC-T-CAT-TTAAAGT--GCAAACT
* * **** * * * * * ** ** *
229470 GTG-TTTT-TGGTTCCTAA-TCTTGAAATGAATGGAGACTTT-TACG-AGAATCAATGCAT--GT
105 TTGATTTTAAGGAAAATAAGGC---AAA-GAA--AAGA-TTTCCATGCAAAAGAAAACCATCAAT
* * * * *** * * *
229528 CTCATTTA----AA-GTGCA-AACTTTGATTT-TA-TGGAAAATTAGGCAAA-GAA--AAGAT-T
163 ATCATTTATCCTAATGAGGAGAA-TGTG-TTTATAGTGCCTAATCACG-AAATGAATGAAGATCG
* * * * * * * * *** * * *
229581 TTCATGCAAAAGAAAACCATAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
225 TT-A--C--TAG-AATCCAT-GT-T--TGTCTCAT-TTGA-G-GAACG-AACT-TAG-ACTTTA-
* ** ** * * * ** * * *
229646 CATGAAA-T-GAATGAAG-ATCCG-TAC-T-AGAATCCATGTTTGTC-TCATTTGAGGCA-GGA-
273 CA-AAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCA---AAG-CATCA-AT-A-TCATGTAT
* * ** ** * * *** *** ** ** * *
229702 ACTTA-GA-ATTTACAC-AAATTGGTGG-GAC-AA--AAGCGTATCTTGCGAAACCAAAGCATCA
330 CCTTATGAGA---AGACTATGTTTATGGTGCCTAATCCAGAAAAGAATG-GGGA--TTAGTATGA
* * * * * ** * *
229760 ATA-TCATGTAT-CCGTA--TAAGAAGACTATGTTT-ATGGTGCCTAATCTAGAAAAAATGG-GG
389 GTATTCATGTTTGTCTTATTTAAG-AGACAAACTTTGAT--T--CT-ATC----AATAACGGTGG
* ** * * * ***
229819 ATTAGTATGAGTATTCCTATTTGTCTTA-TTTAAGAG-A-C
444 A-AAG-ACAAG-CTT-CT-CTTG-C-GACACCAA-AGCATC
* * * * * ** * * *
229857 AACTTTGATTCTAT-C-AAT-AACGGTGGAAAGACAAGCTTCTCTTGCGACACCAAAGCATCG-A
1 AA-TGTCA-TGTATCCTAATGAA--G-GGAATG---TG-TT-T-TTG-G-TTCCTAATC-TTGAA
* ** * ** ** * *** *** * * * *
229918 CATCATGTATCCTAATAAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGATTGGT
52 AAGAATGGAGACTTTTACAA-GAATCAATGCAT-G-T-CTCAT-TT--AAAG--TGCAAACT--T
** * * ** * **** * * * ** * **
229983 ATGAGAATCAATGCCTGTCTCATTTAAAGTGGAAA-CTTTGATTT-TATGGAAAATAAGGCAAAG
106 -TGA-TTTTAA-G---G---AAAAT-AAG-GCAAAGAAAAGATTTCCATGCAAAAGAAAACCATC
** * ** * ** *** ** *
230046 AA-AAGA-TT-TCCATGAA-AAAAAAAACCATCAATATCA-TGCATCCTGATGAGGAGAATGTGC
160 AATATCATTTATCC-T-AATGAGGAGAA-TGTGTTTAT-AGTG---CC---T-A--ATCACG---
*
230106 TTATAGTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTAATTTGAGG
209 ------------------AAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGG
* *
230171 AACGGACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTACGAAACCAAAGCATCAAT
256 AACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAAT
** * * * ** * * * *
230236 ATCATGTATTGTTTTGAGAAGACTATGTCTGTGGTGCCTAAAACGGAAAAGAATGGGAATTTGTG
321 ATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTA
* * * *
230301 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTAATTTTATCAATATCGGTGGAAAGAAA
386 TGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACA
* *
230366 AGCTTCTCTTGTGACACCAAGGCATC
451 AGCTTCTCTTGCGACACCAAAGCATC
* *
230392 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT-CTCAATTTTGAAAAAAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCT-AATCTTGAAAAGAATGGAGACT
* * * * * * * *
230456 GTTT-CAAGAATCAATGC-TTTC-CCTATTGAAGGGACAAACATTGATTTTAAGTAAAATAGGGA
65 -TTTACAAGAATCAATGCATGTCTCAT-TTAAAGTG-CAAACTTTGATTTTAAGGAAAATAAGGC
* * * * * * *
230518 AAAGAAAAGATTTCCATACGAATGAAAACCGTCAATATCATTTATGCTAATAAGAAGAATGTGTT
127 AAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * * *
230583 TATAGTGCCTAATCACAAAACGAATGATGATCATTTTGCTAGAATCTC-TGTTTGTCTCATTTGA
192 TATAGTGCCTAATCACGAAATGAATGAAGATC--GTTACTAGAATC-CATGTTTGTCTCATTTGA
* * * * *
230647 GGAACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGGGAAACCAAAACATCA
254 GGAACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCA
* * * * * * **
230712 ATTTCATTTATCCTTATGAGAAGACTATGTTTACGGTGCCAAATCTAAAAAAGAATGTCGATTAG
319 ATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAG
* * * * * * * *
230777 TATGAGTATTTAGGTTTGCCTTAGTTAAGAGACGAATTTTGATTCTATAAATAACGATGGAAAGA
384 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGA
* * * *
230842 CAGGCTTC-CTTTGCGATAGCAAAGCAAC
449 CAAGCTTCTC-TTGCGACACCAAAGCATC
* * * *
230870 ATTGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGGTCCAAATCTTAAAAAGAATGGAGACTT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
* * * *
230935 TTACAAGAATGAATGCATGTCGCATTTAAAGTACAAACTTTGATTTTAAGG-AATTAAGGCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* * *
230999 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATGTATCCTGATGAGGAGAATGTGTTTATC
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
231064 GTGCCTAATCACGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * * *
231129 ACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATATCAT
261 ACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCAT
* * * * *
231194 GTATCCTTATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAAATATTGGGGATTAGTATGGGT
326 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGT
* * * * * * *
231259 GTTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTTTATCAATATCGTTGGAAGGAAAAGCTT
391 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTT
231324 CTCTTGCGACACCAAAGCATC
456 CTCTTGCGACACCAAAGCATC
*
231345 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
* * * * * * *
231410 GTACTAGAAACAATGTAGGTCTCATTTAAAGTGGAAACTTTGATTTTATGGAAAATAAGGCAAAG
66 TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
* *
231475 AAAAGATTTCGATGCAAAAGAAAACCATCAATACCATTTATCCTAATGAGGAGAATGTGTTTATA
131 AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* * * * * *
231540 GTGCCTAATCACGAAATGAATGAAGATCGTTAGTAGAATCCATATTTGTCTAATTTGATGAATGG
196 GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
* * * * * *
231605 GCTTATACTTTACAAAAATTAGAGGAAAGAAAGCATTTCTTGCAAAACCAAAGCATCAAATATCA
261 ACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATC-AATATCA
* ** * *** * * *
231670 TGTTTTGTTTTGAGAAGACTATGTTTATGGTGCCTAATATGGAAAAGAATGGGTATTTGTGTGAG
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAG
* * ** * *
231735 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCGATATTGGTGGAAAAAAAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
231800 TCTCTT-----------G----
455 TCTCTTGCGACACCAAAGCATC
* * *
231807 --TG--A--CA-CC-----AAGGGAATGTGTTTTTGGTT-CTCAATTTTGAAAAGAAGGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCT-AATCTTGAAAAGAATGGAGACT
* * * * *
231859 GTTT-CAAGAATCAATG-TTG-C-CCTATTGAAGGGACAAACTTTGATTTTAAGGAAAAT-AGGG
65 -TTTACAAGAATCAATGCATGTCTCAT-TTAAAGTG-CAAACTTTGATTTTAAGGAAAATAAGGC
* * * * * * * *
231919 AGAAGAAAAGATTTTCGTGCGAATGAAAATCGTCAATATCATTTATGCTAATAAGGAGAATGTGT
127 A-AAGAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGT
* * *
231984 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTTTGCTAGAATCCCA-GTTTGTCTCATTTG
191 TTATAGTGCCTAATCACGAAATGAATGAAGATC--GTTACTAGAAT-CCATGTTTGTCTCATTTG
* * * *
232048 AGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCATTTCTTGCGAAACCAAAGCATC
253 AGGAACGAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATC
* ** ** **
232113 AATATCATTTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCTGGAAATTAATGTCGATTA
318 AATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTA
* * * *
232178 GTATGAGTATTTAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAACGATGGAAAG
383 GTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAG
* * *
232242 ACAGGCTTCTTTTGCGACAACAAAGCATC
448 ACAAGCTTCTCTTGCGACACCAAAGCATC
* * * *
232271 ATTGTCATGTATCCTAATGAAGGGAATGCGCTTTTGGTTCCCAATCTT-AAAGAGAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAA-AGAATGGAGACT
* * * * ** *
232335 TTTACAAGAATGAATGCATGTCGCATTTAACGTACAAACTTTGATTTTTTGGAAAATAAGGTAAA
65 TTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAA
* ** * * *
232400 GAAAAGATTTCCATGCAAAATAAAACCATCAATATCATGCATCTTGATGAGGAGAATGTGGTTAT
130 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * *
232465 AGTGCCTAATCATGAAATGAATGAAGATCCTTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
195 AGTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACG
* * * *
232530 AACTTAGAATTTACAAAAATTGGTGGGAAGAAAGTGTATCTTGCGAAACCAAAGCATCAATA-CA
260 AACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* * * *
232594 TGTATCCATATGAGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAACGGGGATTAGTTTGAG
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAG
*
232659 TATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAATAACGGTGGAAAGAAAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
232723 TCTCTTGCGACACCAAAGCATC
455 TCTCTTGCGACACCAAAGCATC
*
232745 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCAC-AATCTTGAAAAGAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC-CTAATCTTGAAAAGAATGGAGACT
* * * * *
232809 TTCACGAGAATCAATGCAGGTCTCATTTAAAG-GGAAACTTTGATTTTAAGGAAAATAAGACAAA
65 TTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAA
* * * * *
232873 GAAAAGATTTCCACGTAAAAGAAAACCATCAACATCATTTATCCTAAAGCGGAGAATGTGTTTAT
130 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * ** * * * *
232938 AGTGCCTAATCACAAAATGAATAAAGATCCCTACAAGAATGCATGTTTGTCTCATTTGAGCAATG
195 AGTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACG
* * * * * * * * *
233003 AACTCATACTTTACACAAATCGGGGGGAAAAAAGCGTATCCTGCGAGACCAAAGCATCAATATCA
260 AACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCA
* *
233068 TGTATCCTTATAAGAATACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAG
325 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAG
* * *
233133 TATTCATGTTTGTCTTATTTGAGAGAC-AACTTTTATTCTATCAATAACGATGGAAAGACAAGCT
390 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCT
*
233197 TCTCTTACGACACCAAAGCATC
455 TCTCTTGCGACACCAAAGCATC
* * *
233219 AATGTCATGTATCCTAATGAAAGGAATGTGTTTTTGGTTCAC-AATCTAGAAAAAAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTC-CTAATCTTGAAAAGAATGGAGACT
* * * *
233283 TTTACGAGAATCAATGCAGGTCTCATTTAAAGGGCAAACTTTGATTTTAATGAAAATAAGGCAAA
65 TTTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAA
* * * *
233348 GAAAAGATTTCCACGCAAAAGAAAACCATCAACATCATTTATCATAAAGCA-GAGAATGTGTTTA
130 GAAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTA
* ** * * * **
233412 TAGTGCCTAATCACGAAATTAATGAAGATCCCTACAAGAATGCATGTTTGTCTCATTTGAGCATT
194 TAGTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAAC
* * * * * *
233477 GAACTCAAACTTTACACAAATTGGTGGGAAGAAAACGTATCTTGCGAAACCAAAGCATCAATATC
259 GAACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATC
* * *
233542 ATGTATCCGTATAAGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAATGGGGATTAGTATGA
324 ATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGA
233607 GTATTCATGTTTGTCTTATTTAAGAGAC-AACTTTGATTCTATCAA
389 GTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
233652 CAACAGTTTG
Statistics
Matches: 6898, Mismatches: 1308, Indels: 773
0.77 0.15 0.09
Matches are distributed among these distances:
447 2 0.00
448 11 0.00
449 128 0.02
450 148 0.02
451 75 0.01
452 3 0.00
455 2 0.00
456 1 0.00
458 1 0.00
460 3 0.00
466 3 0.00
468 1 0.00
470 1 0.00
471 2 0.00
472 2 0.00
473 231 0.03
474 735 0.11
475 1755 0.25
476 2185 0.32
477 451 0.07
478 432 0.06
479 34 0.00
480 17 0.00
481 13 0.00
482 12 0.00
483 17 0.00
484 8 0.00
485 7 0.00
486 3 0.00
489 1 0.00
490 6 0.00
491 4 0.00
492 9 0.00
493 7 0.00
494 15 0.00
495 21 0.00
496 13 0.00
497 5 0.00
498 10 0.00
499 13 0.00
500 18 0.00
501 18 0.00
502 22 0.00
503 21 0.00
504 23 0.00
505 36 0.01
506 28 0.00
507 26 0.00
508 16 0.00
509 6 0.00
510 7 0.00
511 7 0.00
512 6 0.00
513 7 0.00
514 1 0.00
515 2 0.00
516 2 0.00
517 4 0.00
518 6 0.00
519 13 0.00
520 3 0.00
521 1 0.00
523 5 0.00
524 14 0.00
525 17 0.00
526 5 0.00
527 3 0.00
528 1 0.00
529 2 0.00
530 1 0.00
533 12 0.00
534 8 0.00
535 12 0.00
536 4 0.00
537 2 0.00
538 3 0.00
539 7 0.00
540 3 0.00
541 5 0.00
542 9 0.00
543 22 0.00
544 20 0.00
545 14 0.00
546 12 0.00
547 19 0.00
548 9 0.00
549 4 0.00
551 1 0.00
552 1 0.00
553 6 0.00
554 2 0.00
555 3 0.00
556 4 0.00
558 6 0.00
559 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (476 bp):
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTT
TTACAAGAATCAATGCATGTCTCATTTAAAGTGCAAACTTTGATTTTAAGGAAAATAAGGCAAAG
AAAAGATTTCCATGCAAAAGAAAACCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
GTGCCTAATCACGAAATGAATGAAGATCGTTACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
ACTTAGACTTTACAAAAATTGGAGGGAAGAAAGCGTTTCTTGCGAAACCAAAGCATCAATATCAT
GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGAGT
ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAATAACGGTGGAAAGACAAGCTT
CTCTTGCGACACCAAAGCATC
Found at i:226733 original size:159 final size:158
Alignment explanation
Indices: 224681--228760 Score: 1274
Period size: 159 Copynumber: 25.7 Consensus size: 158
224671 ATTGAAGGGA
* * * * * * * ** *
224681 CAAACTTTAATTTAAAGTAAAATAGGGAAAAGAAAAGATTTTCGTGCGAAAGAAAACCATCAATA
1 CAAACTTTGATTTTATG-AAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATA
* * * *
224746 TCATTTATGCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-CAAAACGAATGAAGATCATTT
65 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAA-GAATGGAGATC-TTT
* * * **
224810 AGCTAGAATCCCTGTTTGTCTCATTTGAGGCA
128 A-CTAGAATCCATGTTTGTCTCATTTAAAGTG
* * ** * *
224842 CAAACTTAGACTTTAAAAAAAT-TGGTGGGAAG-AAAGCATTT-CTTGCGAAACCAAAGCATCAA
1 CAAACTTTGATTTTATGAAAATAAGGT--AAAGAAAAG-ATTTCCTTGCGAAACCAAAGCATCAA
* * * * * ** *** *
224904 TATCATTTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCCGAAAAGAATATCGAT-TAG
63 TATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCT-T
* ** * * *
224968 TA-TGAGTATTTAGGTTTGTCTTATTTAAGAG-A
127 TACT-AGAATCCATGTTTGTCTCATTTAA-AGTG
** * * ** *
225000 CAAACTTTGATTCCAT--CAATAACGGTGGAAAGACAA-CCTTCTCTTGCGACACCAAAGCAAT-
1 CAAACTTTGATTTTATGAAAATAA-GGT--AAAGAAAAGATTTC-CTTGCGAAACCAAAGC-ATC
* * * * * * *
225061 ATTGTCATGTATCCTAATGAAGG-GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA-C
61 AATATCATTTATCCTAATG-AGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATC
* * ** * **
225124 TTTTACAAGAATCAATGCATGTCTCATCTAAAGAA
125 -TTTACTAGAATCCATGTTTGTCTCATTTAAAGTG
* * * * * ** *
225159 CAAACTTTGATTTTAAGGAAAATTA-GCAAAGAAAAGATTTTCATGC-AAAAGAAATCCATCAAT
1 CAAACTTTGATTTT-ATGAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAA-GCATCAAT
** * * * * * * *
225222 ATCATGCATCCTGATGAGGAGAATGTGTTTATAGCGCCTAATCGTGAAATGAATGAAGATCCTTA
64 ATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTA
* * * **
225287 GTAGAATCCATGTTTGTCTCATTTGAGGAA
129 CTAGAATCCATGTTTGTCTCATTTAAAGTG
* * * * ** * * * *
225317 CGAACTTAGAATTTA-CAAAATTGGTGTGAAG-GAAGCGTAT-CTTGCGAAACCAAAGCATCAAT
1 CAAACTTTGATTTTATGAAAATAAG-GTAAAGAAAAG-ATTTCCTTGCGAAACCAAAGCATCAAT
* * * * * * * * * * *
225379 ATAATGTATCCTTATAAGAAGACTATGTTTATGGTGCCGAATCCTGAAAAGAATGGGGAT-TAGT
64 ATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCT-TT
* * *
225443 -GTGAGAATTCATGTTTGTCTCATTTAAGAG-A
128 ACT-AGAATCCATGTTTGTCTCATTTAA-AGTG
* * *** * * * *
225474 CAAACTTTGATTCTAT--CAATAACGGTGGAAAGGCTAG-CTTCTTTTGCGACAGCAAAGCATCA
1 CAAACTTTGATTTTATGAAAATAA-GGT--AAAGAAAAGATTTC-CTTGCGAAACCAAAGCATCA
* * * * * *
225536 TTATCATGTATCCTAATGAAGG-GAATGTGTTTTTGGTTCCCAATC-TAAAAAAGAATGGAGA-C
62 ATATCATTTATCCTAATG-AGGAGAATGTGTTTATGGTGCCTAATCAT-GAAAAGAATGGAGATC
** * * ** * *
225598 TTTTACGGGAATCAACGCATGTCTAATTTAAAGTA
125 -TTTACTAGAATCCATGTTTGTCTCATTTAAAGTG
* * * * * * * ** *
225633 TAAACTTTGATTTTAAGGAAAATAAAGCAAAGAAAAGATTTTCATGCAAAAGAAAACCATCAATA
1 CAAACTTTGATTTT-ATGAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATA
* * * * * **
225698 TCATTTATCCTAAAGCGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCCATAC
65 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTAC
* * **
225763 TAGAATCCATGTTTGTCTCATTTGAGGCC
130 TAGAATCCATGTTTGTCTCATTTAAAGTG
* * * * ** * *
225792 CAAACTTAGAATTTA-CACAAA-ATGGT-GGGACGAAAGCGTAT-CTTGCGAAACCAAAGCATCA
1 CAAACTTTGATTTTATGA-AAATAAGGTAAAGA--AAAG-ATTTCCTTGCGAAACCAAAGCATCA
* * ** * * **
225853 ATATCATGTATCCGT-ATAAAAAGACTATGTTTATGGTGCCTAATCCGGAAAAGAATAGG-GAT-
62 ATATCATTTATCC-TAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAAT-GGAGATC
* * * *
225915 TAGTA-TGAGTATTCC-TGTTTGTCTTATTT-AAGAG
125 T-TTACT-AG-AATCCATGTTTGTCTCATTTAAAGTG
* * * * * * * *
225949 -ACAACTTTGATTCTAT--CAATCACGGTGGAAAGACAAG-CTTCTCTTGCGACACCAAAGCTTT
1 CA-AACTTTGATTTTATGAAAAT-AAGGT--AAAGAAAAGATTTC-CTTGCGAAACCAAAGCATC
* * * * * * *
226010 AATGTCATGTATCATAATCAAAGGA-AA-GTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGA-
61 AATATCATTTATCCTAAT--GAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGAT
* * ** *
226072 CTTTTACGAGAATCAATGCATGTCTCATTTAAAGTA
124 C-TTTACTAGAATCCATGTTTGTCTCATTTAAAGTG
* * * * ** * ** **
226108 CAAACATTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAAAAATCAATA
1 CAAACTTTGATT-TTATGAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATA
* * * * * *
226173 CCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCGTTAC
65 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTAC
* * * *
226238 TAGAATCCATGTTTGTCTAATTCGAGGATTG
130 TAGAATCCATGTTTGTCTCATT-TA-AAGTG
* ** * *
226269 --AACTTAT-ACTTTAAAAAAATTGGAGG-GAAG-AAAGCATTT-CTTGCGAAACCAAAGC-TGC
1 CAAACTT-TGATTTTATGAAAA-T-AAGGTAAAGAAAAG-ATTTCCTTGCGAAACCAAAGCAT-C
* * * ** * **
226327 AATATCATGTATTC-ATATGAGAAGTCTATGTTTATGGTGCCTAATCCGGAAAAGAATGTG-GAT
61 AATATCATTTATCCTA-ATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATG-GAGAT
* * * * * *
226390 -TAGT-CTAAGTATTCATCTTTGTCTTATTTAAGAG-A
124 CT-TTACT-AGAATCCATGTTTGTCTCATTTAA-AGTG
** * * * * * *
226425 CAAACTTTGATTCCAT--CAATAACGGTGGAAAGACAAG-CTTCTCTTGTGACACCAAAGCAAC-
1 CAAACTTTGATTTTATGAAAATAA-GGT--AAAGAAAAGATTTC-CTTGCGAAACCAAAGCATCA
* * * * * * *
226486 ATCGTCGTGTATCCTAATGA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGA-C
62 AT-ATCATTTATCCTAATGAGGA-GAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATC
* * *
226549 TTTTACGAGAATCAATGCATT-TCTCATTTAAAGTG
125 -TTTACTAGAATCCATG-TTTGTCTCATTTAAAGTG
* * ** *
226584 CAAACTTTGATTTTATGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATA
1 CAAACTTTGATTTTAT-GAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATA
** * *
226649 TCATTTATCCTAATGAGGAGAATGCATTTATAGTGCCTAATCATGAAATA-AATGGAGATCCTTA
65 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAA-AGAATGGAGATCTTTA
* *
226713 CTAGAATCCATGTTTCTCTCATTT-GAG-G
129 CTAGAATCCATGTTTGTCTCATTTAAAGTG
** * ** * * * * *
226741 CACGAACTAAGAATTTACAAAAATTGATGG-GAA-AAAAGCGTTT-CTTGTGAAACCAAATCATC
1 CA--AACTTTGATTTTATGAAAA-T-AAGGTAAAGAAAAG-ATTTCCTTGCGAAACCAAAGCATC
* * * * * ** *
226803 AATATCCTGTATCCTTATGAGAAGACTAAGTTTATGGTGCCTAATCCA-GAAAAGAATGGGGAT-
61 AATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-CATGAAAAGAATGGAGATC
* * * * * *
226866 TAGT-GTGAGTATTCATGTTTGTCTTATTT-AAGAG
125 T-TTACT-AGAATCCATGTTTGTCTCATTTAAAGTG
* * * * * * *
226900 -ACAACTTTGATTCTATCAATAA-CAGTGGAAA-AACAAG-CTTCTCTTGCGACACTAAAGCATC
1 CA-AACTTTGATTTTATGAA-AATAAG-GTAAAGAA-AAGATTTC-CTTGCGAAACCAAAGCATC
* * * * * * *
226961 AATGTCATGTATCCTAAAGA-AAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGA-C
61 AATATCATTTATCCTAATGAGGA-GAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATC
* * ** *
227024 TTTTACGAGAATCAATGCATGTCTCATTTAAAGTA
125 -TTTACTAGAATCCATGTTTGTCTCATTTAAAGTG
* * * ** * ** *
227059 CAAACTTTTATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATA
1 CAAACTTTGATTTT-ATGAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATA
* * * * * *
227124 CCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCGTTAC
65 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTAC
* *
227189 TAGAATCCATGTTTGTCTAAGTTGAGGAA-TG
130 TAGAATCCATGTTTGTCTCA-TTTA--AAGTG
* * * * *
227220 --GACTTAT-ACTTTTCA--AAAATTGGAGG-GAAG-AAAGCGTTT-CTTGCGAAACCAAAGCTT
1 CAAACTT-TGA-TTTT-ATGAAAA-T-AAGGTAAAGAAAAG-ATTTCCTTGCGAAACCAAAGCAT
* * * * * *
227277 CAATATCATGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCA-GAAAAGAATGGGGAT
60 CAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAAT-CATGAAAAGAATGGAGAT
* * * *
227341 -TTGTA-TAAGTATTCATGTTTATCTTATTTAAGAG-G
124 CTT-TACT-AGAATCCATGTTTGTCTCATTTAA-AGTG
* * * * * * *
227376 CAAACTTTGATATTAT--CAATAACGTTTGAAGGAAAAG-CTTCTCTTGGGACACCAAAGCATCA
1 CAAACTTTGATTTTATGAAAATAA-G-GT-AAAGAAAAGATTTC-CTTGCGAAACCAAAGCATCA
* * * * *
227438 ATGTCATGTT-TCCTAGTGAAGG-GAATGTGTTTTTGGTTGAC-AATCTTGAAAAGAATGGAGA-
62 ATATCAT-TTATCCTAATG-AGGAGAATGTGTTTATGG-TGCCTAATCATGAAAAGAATGGAGAT
* ** *
227499 CTTTTA-TAAGAATCAATGCATGTCTCATTTAAAGTA
124 C-TTTACT-AGAATCCATGTTTGTCTCATTTAAAGTG
* * * ** *
227535 CAAACTTTGATTTTAAGGAAAATAAGGTAAAGAAAA-ATTTTCCATGCAAAAGAAAACCATCAAT
1 CAAACTTTGATTTT-ATGAAAATAAGGTAAAGAAAAGA-TTTCCTTGCGAAACCAAAGCATCAAT
* * * * * * * ***
227599 AACATTTATCCTAACGCGGAGAATGTGTTTATAGTGCCTAATCACGAAATGAATGAAGATCCCGA
64 ATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTA
* * * *
227664 CAAGAATCCGTGTTTGTCTCGTTTAAGCAATG
129 CTAGAATCCATGTTTGTCTCATTTAA--AGTG
* * * * * * *
227696 --AACTCAT-ACTTTA-CACAAAT-TGGTGAGAAG-AAAGCGTAT-CTTGCAAAACCAAAGCATC
1 CAAACT-TTGATTTTATGA-AAATAAGGT-A-AAGAAAAG-ATTTCCTTGCGAAACCAAAGCATC
* * * * ** *
227754 AATATCATGTATCC-ATATAAGAAGACTAAGTTTATGGTGCCTAATC-TAGAAAAGAATGGGGAA
61 AATATCATTTATCCTA-ATGAGGAGAATGTGTTTATGGTGCCTAATCAT-GAAAAGAATGGAG-A
** * * * *
227817 T-AGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-A
123 TCTTTACT-AGAATCCATGTTTGTCTCATTTAA-AGTG
* * * ** * ** *
227852 CAAACTTTGATTCTAT--CAATAACGGTGGAAAG-ACAGGCTTCTCTTGTGACCCCAAAGCAACA
1 CAAACTTTGATTTTATGAAAATAA-GGT--AAAGAAAAGATTTC-CTTGCGAAACCAAAGCATCA
* * * * ** * * *
227914 TTGTCCTGTATCCTAAT-AAAAGGAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGA-CT
62 ATATCATTTATCCTAATGAGGA-GAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATC-
* * * **
227977 TTTACGACAATCAATGCATGTCTCATTTAAAGTG
125 TTTACTAGAATCCATGTTTGTCTCATTTAAAGTG
* * * ** *
228011 CAAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAACCATCAATA
1 CAAACTTTGATTTTAT-GAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATA
* * * * * * * *
228076 TTATTTATCCTAATGAGGAGAATGCGTTTATAGTGCCTAATCATTAAATGAATGAAGATCCTTGC
65 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTAC
* * *
228141 TAGATTCCATGTTTCTCTCATTT-GAG-G
130 TAGAATCCATGTTTGTCTCATTTAAAGTG
* * ** * * * *
228168 CATGAACTTAGAATTTACAAAAATCGATGG-GAA-AAAAGCGTTT-CTTGCGAAACCAAATCATC
1 CA--AACTTTGATTTTATGAAAAT--AAGGTAAAGAAAAG-ATTTCCTTGCGAAACCAAAGCATC
* * * * * * * *
228230 AATATCCTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGCGAT-T
61 AATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCT
* * * *
228294 CGTA-TGAGTATTCATGTTTGTCTTATTTAAGAG-G
126 -TTACT-AGAATCCATGTTTGTCTCATTTAA-AGTG
* * * * * *
228328 CAAACTTTGATATTATCAATAACCT-TGG-AAGGAAAAG-CTTCTCTTGCGACACCAAAGCATCA
1 CAAACTTTGATTTTATGAA-AA--TAAGGTAAAGAAAAGATTTC-CTTGCGAAACCAAAGCATCA
* * * * * * *
228390 ATGTCATGTT-TCCTAGTGAAGG-GAGTGTGTTTTTGGTTCTTAATCTTGAAAAGAATGGAGA-C
62 ATATCAT-TTATCCTAATG-AGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATC
* * ** *
228452 ATTTACAAGAATCAATGCATGTCTCATTTAAAGTA
125 -TTTACTAGAATCCATGTTTGTCTCATTTAAAGTG
* * * ** * ** *
228487 CAAACTTTGATTGTAAGGAAAATAAGGCAAAGAAAAGATTTCGATGCAAAAGAAAACCATCAATA
1 CAAACTTTGATT-TTATGAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATA
* * * * * * *
228552 CCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAGTCATGAAATGAATGAAGATCGTTAG
65 TCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTAC
* *
228617 TAGAATCCATGTTGGTCTAATTTGAGGAA-TG
130 TAGAATCCATGTTTGTCTCATTT-A--AAGTG
** ** **
228648 --AACTTAT-ATTTTACAAAAATTGGGGGGAAGAAAACG-TTT-CTTGCGAAACCAAAGCATCAA
1 CAAACTT-TGATTTTATGAAAA-TAAGGTAAAGAAAA-GATTTCCTTGCGAAACCAAAGCATCAA
** * ** * **
228708 TATCACGTATCCGT-ATGAGAAGTCTATGTTTATGGTGCCTAATCCGGAAAAGA
63 TATCATTTATCC-TAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGA
228761 GTGTGGATTA
Statistics
Matches: 2797, Mismatches: 854, Indels: 539
0.67 0.20 0.13
Matches are distributed among these distances:
154 2 0.00
155 9 0.00
156 33 0.01
157 200 0.07
158 993 0.36
159 1296 0.46
160 193 0.07
161 40 0.01
162 31 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (158 bp):
CAAACTTTGATTTTATGAAAATAAGGTAAAGAAAAGATTTCCTTGCGAAACCAAAGCATCAATAT
CATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCTAATCATGAAAAGAATGGAGATCTTTACT
AGAATCCATGTTTGTCTCATTTAAAGTG
Done.