Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1574
Parameters: 2 7 7 80 10 50 1000
Length:  53604

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
134--175
2
21.5
2
95
4
77
50
0
0
50
1.00
779--807
2
14.5
2
100
0
58
51
0
0
48
1.00
1277--1332
24
2.3
24
79
14
71
50
0
0
50
1.00
1314--1356
10
4.1
10
87
6
59
44
0
0
55
0.99
5390--5454
33
2.0
33
87
0
94
46
1
3
49
1.27
15849--15883
17
2.1
17
88
0
52
80
0
2
17
0.84
21186--21228
10
4.1
10
82
11
59
55
0
0
44
0.99
21171--21268
27
3.7
26
71
20
76
48
0
0
51
1.00
21210--21265
24
2.3
24
79
14
71
50
0
0
50
1.00
21733--21769
2
18.5
2
100
0
74
48
0
0
51
1.00
22373--22416
2
22.5
2
95
4
81
50
0
0
50
1.00
22726--22788
26
2.4
25
76
5
63
41
0
1
57
1.08
23281--23349
29
2.4
28
76
11
68
52
0
1
46
1.09
24018--24048
3
10.3
3
100
0
62
0
35
0
64
0.94
25550--25591
22
2.0
20
86
9
57
40
2
9
47
1.49
29010--29047
11
3.4
11
86
13
51
78
0
0
21
0.74
29010--29046
19
2.0
18
89
5
56
78
0
0
21
0.75
29014--29048
16
2.3
15
90
5
52
80
0
0
20
0.72
29835--29884
14
3.4
14
83
13
57
50
0
0
50
1.00
29846--29889
14
3.1
14
83
12
54
50
0
0
50
1.00
29819--29889
14
4.9
16
75
19
50
50
0
0
49
1.00
30084--30115
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30658--30697
2
20.0
2
94
0
71
47
2
0
50
1.14
31990--32046
24
2.3
26
75
6
64
36
1
0
61
1.07
32472--32538
22
2.9
23
82
10
75
52
0
1
46
1.09
32476--32558
37
2.2
37
85
6
123
51
0
2
45
1.14
32511--32564
22
2.4
22
81
9
56
48
0
3
48
1.19
33679--33729
23
2.2
24
79
10
61
49
0
0
50
1.00
41714--41756
2
21.5
2
95
0
77
53
0
46
0
1.00
42663--42761
14
7.1
14
75
7
87
29
22
19
29
1.98
42663--42762
27
3.6
27
73
8
85
30
22
19
29
1.97
42666--42761
41
2.3
41
82
5
113
30
21
18
29
1.97
42699--42795
27
3.6
27
78
1
104
27
25
21
24
1.99
42699--42797
14
7.2
14
74
4
85
28
25
22
24
1.99
43357--43395
17
2.6
14
78
21
51
28
15
17
38
1.91
43628--43662
18
2.1
17
89
10
54
60
5
0
34
1.21
52123--52746
210
3.0
207
91
4
976
49
6
3
40
1.47
52591--52645
21
2.6
23
77
11
64
60
1
0
38
1.08
53137--53197
21
2.7
22
76
21
63
65
1
1
31
1.12
53142--53205
33
1.9
33
84
12
87
67
1
1
29
1.09
53137--53202
23
2.7
25
77
15
66
65
1
1
31
1.11

Tables:   1

The End!