genome.fa.s1579.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1579
Parameters: 2 7 7 80 10 50 1000
Length:  80561

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3512--3544	16	2.0	17	88	5	50	66	0	33	0	0.92
6689--6748	28	2.2	27	84	3	75	48	1	3	46	1.28
7101--7146	14	3.4	13	81	3	56	41	0	2	56	1.11
7188--7268	39	2.1	40	88	4	121	39	2	4	53	1.36
7503--7560	20	2.9	20	69	5	55	46	8	0	44	1.34
13330--13379	25	2.0	25	92	3	84	44	8	2	46	1.44
16073--16101	15	1.9	15	100	0	58	34	10	0	55	1.34
20142--20191	26	1.9	26	84	8	66	26	18	12	44	1.84
20192--20284	39	2.4	37	79	8	96	25	6	19	48	1.72
21028--21061	13	2.6	13	85	0	50	41	14	11	32	1.82
21569--21607	17	2.4	17	91	4	62	41	0	10	48	1.37
26117--26144	13	2.2	13	100	0	56	28	14	17	39	1.89
26097--26162	33	2.0	33	85	11	91	31	12	13	42	1.81
41089--41152	12	5.3	12	74	12	51	85	7	6	0	0.73
41089--41152	21	3.2	20	84	8	76	85	7	6	0	0.73
41089--41152	29	2.2	28	84	10	85	85	7	6	0	0.73
41089--41152	24	2.7	24	80	9	69	85	7	6	0	0.73
42176--42257	37	2.2	37	97	0	155	28	15	12	43	1.83
42627--43368	29	25.9	28	81	7	737	29	27	18	24	1.98
42627--43368	57	13.0	56	83	6	737	29	27	18	24	1.98
43431--43516	43	2.0	43	86	0	118	26	19	19	33	1.96
43471--43920	49	8.9	49	78	7	429	24	24	16	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43471--43917	101	4.4	98	80	9	436	24	24	16	34	1.95
43472--43810	150	2.3	150	91	0	525	24	24	17	33	1.96
43479--43864	150	2.6	150	87	1	520	24	25	16	33	1.96
53215--53333	52	2.3	51	89	2	177	40	15	15	28	1.88
53662--53984	167	2.0	166	88	3	490	27	7	17	47	1.73
55817--55968	77	2.0	77	92	0	250	26	19	17	36	1.94
56734--56870	69	2.0	69	88	2	204	29	21	8	39	1.84
56747--56891	69	2.1	69	80	5	168	33	21	8	36	1.83
59271--59501	96	2.4	95	79	7	234	37	15	20	26	1.92
63326--63377	21	2.4	22	84	12	72	65	5	21	7	1.40
69482--69538	21	2.7	21	97	0	105	33	10	19	36	1.86
69594--69661	19	3.9	19	78	21	85	35	11	14	38	1.83
69615--69639	13	1.9	13	100	0	50	36	16	16	32	1.90
69596--69658	32	2.0	32	96	0	117	34	12	15	36	1.86
69701--69726	13	2.0	13	100	0	52	30	15	15	38	1.88
69681--69747	33	2.0	33	88	0	98	25	14	16	43	1.86
72222--72392	51	3.3	51	78	4	189	29	25	11	33	1.91
72375--72456	28	2.9	28	82	7	96	24	31	17	26	1.97

Tables:   1

The End!