Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1582
Parameters: 2 7 7 80 10 50 1000
Length:  47386

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
225--270
18
2.6
18
79
6
58
54
0
0
45
0.99
472--512
2
20.5
2
100
0
82
48
0
0
51
1.00
1289--1337
20
2.4
20
86
3
62
57
0
2
40
1.10
1343--1380
17
2.2
18
81
13
53
60
0
0
39
0.97
1349--1381
17
1.9
17
93
0
57
60
0
0
39
0.97
2112--2176
25
2.8
23
75
11
60
46
0
0
53
1.00
2116--2189
24
3.0
24
72
18
62
50
0
0
50
1.00
2130--2183
25
2.2
24
87
9
74
48
0
0
51
1.00
2228--2289
15
4.2
14
73
17
54
51
3
0
45
1.17
2237--2302
28
2.3
30
78
5
73
54
3
1
40
1.25
2615--2646
16
1.9
17
93
6
57
34
0
0
65
0.93
2644--2678
13
2.9
12
91
8
54
54
5
0
40
1.24
3436--3465
16
1.9
16
93
6
53
73
0
3
23
0.98
4343--4402
20
2.7
21
76
18
59
66
0
1
31
1.01
7080--7134
27
2.1
27
80
12
62
45
0
0
54
0.99
7066--7117
20
2.5
21
84
12
72
38
0
0
61
0.96
7051--7119
20
3.5
20
74
23
58
40
1
0
57
1.07
7678--7745
3
23.3
3
73
21
56
60
0
1
38
1.06
8325--8351
2
13.5
2
100
0
54
51
0
0
48
1.00
8922--8958
18
2.1
18
89
0
56
48
0
0
51
1.00
8923--9024
50
2.0
51
81
9
120
43
1
0
54
1.11
9389--9449
17
3.2
17
74
24
59
81
0
18
0
0.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9399--9449
23
2.1
24
92
7
86
84
0
15
0
0.63
9572--9651
3
27.0
3
97
2
153
33
0
0
66
0.92
9705--9778
4
19.0
4
81
5
71
77
0
18
4
0.93
9710--9782
23
3.1
23
80
2
83
79
0
16
4
0.88
9824--9876
27
2.0
27
82
7
65
32
0
1
66
1.03
10506--10546
16
2.6
16
84
0
55
65
0
2
31
1.05
11294--11342
19
2.7
18
87
3
71
83
4
12
0
0.77
11425--11466
14
2.9
15
79
13
52
33
0
0
66
0.92
12449--12480
12
2.4
14
90
10
50
50
0
0
50
1.00
12628--12671
24
1.9
24
90
9
74
79
0
20
0
0.73
14330--14378
26
2.0
24
88
8
71
61
0
0
38
0.96
14606--14640
12
2.9
12
86
0
52
68
0
0
31
0.90
14699--14736
17
2.3
17
86
4
51
55
0
10
34
1.34
15156--15208
21
2.6
21
85
11
67
62
0
0
37
0.96
20503--20541
20
2.0
20
84
0
51
56
2
2
38
1.27
21190--21235
20
2.3
20
88
7
67
43
2
13
41
1.55
21202--21239
20
2.0
20
94
5
69
39
0
15
44
1.47
21300--21334
12
2.6
14
86
13
56
68
0
0
31
0.90
21300--21334
7
5.3
7
86
13
56
68
0
0
31
0.90
22370--22403
17
2.0
17
100
0
68
47
11
17
23
1.81
24394--24434
17
2.3
18
87
4
57
39
0
14
46
1.45
25066--25119
27
1.9
29
82
14
69
42
0
3
53
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27190--27296
27
3.9
27
79
10
103
38
0
0
61
0.96
27190--27266
28
2.8
27
86
4
100
40
0
0
59
0.97
27232--27297
18
3.7
18
75
15
57
34
0
0
65
0.93
27188--27282
28
3.4
27
75
13
95
38
0
0
61
0.96
28233--28302
26
2.7
27
72
12
65
47
1
2
48
1.25
28894--28992
30
3.2
30
74
16
85
65
2
2
30
1.15
29517--29565
24
2.0
25
88
8
73
51
2
2
44
1.24
29930--29974
2
22.5
2
100
0
90
48
0
0
51
1.00
41285--41331
17
2.9
16
75
12
51
55
0
0
44
0.99
41278--41370
9
10.1
9
72
16
66
52
1
0
46
1.07
41336--41402
5
13.8
5
74
12
59
41
1
0
56
1.08
41345--41384
19
2.1
19
90
0
62
35
2
0
62
1.09
41598--41635
20
1.9
20
84
10
51
63
0
2
34
1.09
42124--42181
30
2.0
29
86
3
80
43
0
1
55
1.10
42289--42326
2
20.0
2
89
10
62
50
0
0
50
1.00
42291--42326
13
2.8
13
91
0
63
50
0
0
50
1.00

Tables:   1

The End!