genome.fa.s1583.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1583
Parameters: 2 7 7 80 10 50 1000
Length:  34331

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1078--2768	84	20.1	84	78	4	1039	19	27	17	35	1.94
1085--4071	126	23.7	126	70	8	928	19	27	17	36	1.94
1788--4073	84	27.1	84	76	6	1018	19	27	17	36	1.94
1101--4071	42	70.6	42	69	9	733	18	27	17	36	1.94
3509--3610	50	2.1	49	83	9	127	16	29	15	38	1.90
4082--4482	42	9.5	42	69	11	212	18	27	16	36	1.93
4009--4137	68	1.9	68	88	0	195	14	27	20	36	1.92
3930--4212	152	1.9	152	83	4	374	17	27	18	36	1.94
3841--4295	236	1.9	236	83	0	579	16	28	18	36	1.93
4372--4499	42	3.0	42	75	8	125	17	29	19	33	1.95
4080--4504	168	2.5	167	80	2	467	18	28	16	36	1.93
4087--4534	84	5.3	84	75	4	377	18	27	16	37	1.93
5133--5246	57	2.0	57	91	3	185	19	19	18	42	1.89
5392--5468	38	2.0	38	87	0	109	46	15	20	16	1.84
6246--6281	19	1.9	18	88	5	54	47	36	11	5	1.63
6248--6315	36	1.9	35	85	8	93	54	32	11	1	1.46
12547--12593	24	2.0	24	83	8	60	21	8	12	57	1.62
13556--13590	18	1.9	18	88	11	54	31	8	22	37	1.85
14816--14850	18	1.9	18	88	11	54	31	8	22	37	1.85
17134--17172	21	1.9	21	85	15	55	53	2	10	33	1.48
20736--20819	44	1.9	44	92	0	141	20	16	14	48	1.80
28375--28432	20	2.9	20	92	0	89	29	10	12	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30469--30622	79	1.9	79	90	2	247	25	27	15	31	1.96
30580--30651	27	2.6	28	84	8	103	20	29	23	26	1.99
30501--30728	105	2.2	105	88	6	336	24	27	18	29	1.98
30608--30935	78	4.2	79	85	3	405	27	25	15	31	1.96
30795--31197	129	3.1	129	82	4	483	28	23	13	34	1.93
31003--31109	50	2.1	51	84	1	135	28	20	13	37	1.90
31061--31217	79	2.0	79	83	2	199	26	24	15	33	1.95
32368--32404	16	2.3	17	81	9	51	43	0	18	37	1.51

Tables:   1

The End!