genome.fa.s1586.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1586
Parameters: 2 7 7 80 10 50 1000
Length:  88015

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275--16873	476	32.9	475	87	3	21145	35	14	19	30	1.92
1275--43076	951	43.6	950	77	9	25788	35	14	19	30	1.92
16003--17746	869	2.0	868	92	1	2933	35	13	19	31	1.91
17422--22380	476	10.4	476	87	1	6868	35	14	19	30	1.91
21995--22747	374	2.0	374	87	1	1096	36	13	18	31	1.90
22370--23550	476	2.5	477	87	2	1660	34	14	19	31	1.92
26800--26851	19	2.8	19	91	2	88	38	17	11	32	1.85
26803--26868	19	3.5	19	85	2	71	37	16	12	33	1.86
27117--35079	476	16.8	475	87	2	11198	35	14	19	30	1.91
35083--37899	476	5.9	476	87	1	3935	35	14	18	30	1.92
37903--43076	476	10.9	476	87	1	6957	35	14	19	30	1.92
43787--43915	52	2.5	52	90	0	186	27	18	17	36	1.93
43820--43936	52	2.3	49	81	12	144	29	18	17	33	1.95
43961--44028	31	2.2	32	86	2	93	36	16	10	36	1.82
44000--44048	19	2.6	19	90	0	80	32	16	14	36	1.89
44296--46056	476	3.7	475	89	1	2627	35	14	19	30	1.91
47669--48772	49	23.7	49	74	12	846	32	18	24	24	1.97
47851--47929	39	2.0	39	87	0	113	25	16	25	32	1.96
47754--48298	136	4.0	136	90	1	831	32	19	24	24	1.97
47987--48065	39	2.0	39	90	0	122	29	20	22	27	1.98
48123--48201	39	2.0	39	92	0	131	26	20	24	29	1.99
48026--48531	233	2.2	233	93	0	859	32	20	23	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48162--48744	97	6.3	97	79	9	586	32	19	23	24	1.98
47903--48744	369	2.3	368	90	2	1282	32	19	23	24	1.98
48259--48772	136	3.8	136	89	2	728	32	19	23	23	1.98
48039--48618	233	2.5	228	89	2	756	32	20	23	24	1.98
48579--48761	92	2.0	92	93	2	314	33	18	24	24	1.97
48834--48887	27	2.0	27	100	0	108	25	14	37	22	1.93
48854--49016	66	2.4	69	84	3	224	34	11	33	19	1.88
49004--49158	33	4.8	33	80	10	124	34	12	30	22	1.91
48986--49158	64	2.7	65	81	10	196	35	12	31	20	1.90
48823--49158	34	10.4	33	74	11	187	35	12	32	20	1.89
49003--49152	31	4.7	31	79	10	135	34	12	30	22	1.91
57428--57452	13	1.9	13	100	0	50	36	16	16	32	1.90
57789--78198	476	42.9	476	88	1	29256	35	14	19	30	1.92
78959--78984	13	2.0	13	100	0	52	30	15	15	38	1.88
79682--79725	21	2.1	21	83	8	54	25	31	4	38	1.76
81532--81557	13	2.0	13	100	0	52	38	15	15	30	1.88
83636--83666	15	2.1	15	93	0	53	12	22	16	48	1.80
85467--85511	21	2.1	21	84	8	56	22	20	4	53	1.63
87729--87754	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1

The End!