genome.fa.s1587.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1587
Parameters: 2 7 7 80 10 50 1000
Length:  111594

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2079--2212	67	2.0	67	100	0	268	41	14	19	23	1.89
2722--2753	13	2.4	14	90	10	50	12	9	53	25	1.68
3022--3093	20	3.7	20	84	1	92	44	8	15	31	1.76
6137--6181	23	2.0	23	82	8	56	66	2	2	28	1.15
9737--9780	2	22.0	2	95	0	79	47	0	0	52	1.00
14436--14473	2	19.0	2	100	0	76	50	0	0	50	1.00
16779--16819	14	2.9	15	78	10	50	58	4	2	34	1.32
18902--18935	10	3.3	10	88	8	50	55	0	0	44	0.99
18947--18982	18	2.0	18	94	0	63	30	0	2	66	1.06
19047--19093	25	2.0	24	91	8	78	48	0	0	51	1.00
19051--19105	25	2.2	25	83	3	67	56	1	0	41	1.10
20219--20469	125	2.0	125	97	0	475	41	12	15	29	1.84
21045--21090	23	2.0	23	87	8	67	47	0	0	52	1.00
21493--21542	19	2.5	20	78	12	59	58	0	0	42	0.98
21559--21637	21	3.9	21	71	19	69	53	1	1	44	1.16
21674--21722	20	2.5	20	78	15	57	36	0	0	63	0.95
21723--21772	15	3.4	15	77	5	66	66	0	0	34	0.92
21726--21774	14	3.4	14	83	5	71	67	0	0	32	0.91
21796--21847	26	2.0	26	100	0	104	34	34	15	15	1.89
22121--22165	18	2.5	19	79	17	51	53	0	0	46	1.00
23073--23124	20	2.5	20	96	3	95	32	0	0	67	0.91
25234--25262	12	2.3	13	94	5	51	3	13	13	68	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28004--28028	13	1.9	13	100	0	50	36	16	16	32	1.90
27984--28049	32	2.0	33	94	2	116	34	12	16	36	1.86
28090--28114	13	1.9	13	100	0	50	32	16	16	36	1.90
43493--44129	29	21.7	29	83	5	707	28	28	16	26	1.97
43488--44129	115	5.5	115	81	7	679	28	28	16	26	1.97
43493--44129	144	4.3	144	88	3	877	28	28	16	26	1.97
43959--44033	35	2.2	35	87	2	116	21	33	10	34	1.88
43959--44050	35	2.7	35	82	1	105	19	31	13	35	1.90
44024--44175	28	5.3	28	84	5	173	35	26	17	20	1.94
44211--44628	48	8.6	48	78	9	379	24	25	18	31	1.97
44205--44628	149	2.9	144	80	5	448	24	25	18	31	1.97
45301--45352	19	2.7	20	93	3	88	32	11	17	38	1.85
45395--45419	13	1.9	13	100	0	50	32	16	16	36	1.90
45408--45525	52	2.3	52	100	0	236	28	19	18	33	1.96
53977--54091	53	2.2	53	82	3	142	49	13	4	33	1.61
54087--54167	16	5.1	16	75	8	67	53	2	0	44	1.14
54831--54877	3	15.7	3	95	0	85	65	0	2	31	1.04
58477--58516	19	2.1	19	90	9	64	57	0	0	42	0.98
59530--59570	21	2.0	21	95	0	73	46	19	9	24	1.80
62563--62592	15	1.9	16	93	6	53	23	0	0	76	0.78
63767--64013	135	1.8	133	84	3	334	44	12	24	18	1.84
63767--64196	67	6.5	66	76	7	316	44	13	23	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65195--65337	67	2.1	67	81	2	162	41	12	21	23	1.87
71561--71713	71	2.2	71	100	0	306	33	13	19	33	1.90
74770--74794	13	1.9	13	100	0	50	32	16	16	36	1.90
74749--74812	33	2.0	33	90	3	103	31	15	15	37	1.89
75146--75219	34	2.1	36	79	18	86	18	13	10	56	1.66
76994--77026	16	2.1	16	100	0	66	63	6	12	18	1.48
77734--77769	16	2.2	16	95	0	63	30	0	16	52	1.44
80917--80956	20	2.0	21	95	5	73	40	15	15	30	1.87
83957--84030	34	2.1	35	85	7	98	17	16	12	54	1.72
84447--84893	237	1.9	237	82	6	557	28	27	10	33	1.91
84441--84972	80	6.7	79	75	7	393	28	27	11	33	1.91
90127--90151	13	1.9	13	100	0	50	32	20	16	32	1.94
90107--90169	33	1.9	33	86	0	90	33	20	14	31	1.92
90201--90253	20	2.7	20	91	2	81	37	18	13	30	1.89
90242--90266	13	1.9	13	100	0	50	32	16	16	36	1.90
90223--90288	33	2.0	32	88	8	98	37	15	15	31	1.88
90841--90882	21	2.0	20	86	4	57	35	21	4	38	1.75
91111--91154	23	1.9	23	100	0	88	59	18	4	18	1.55
91912--91961	21	2.4	21	83	9	59	46	0	22	32	1.52
91919--91961	21	2.0	22	86	4	61	48	0	23	27	1.51
92070--92095	13	2.0	13	100	0	52	38	15	15	30	1.88
93779--93808	11	2.7	11	100	0	60	0	10	33	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94577--94660	19	4.1	21	69	13	68	27	27	4	40	1.76
102235--102301	33	2.0	33	85	5	91	34	14	13	37	1.86
102330--102382	19	2.7	20	91	2	81	33	18	16	30	1.94
107807--107860	20	2.7	20	91	0	81	35	20	14	29	1.93
107889--107941	19	2.7	20	88	2	72	37	20	13	28	1.90
107930--107967	13	2.9	13	96	0	67	34	15	13	36	1.87

Tables:   1

The End!