Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1588
Parameters: 2 7 7 80 10 50 1000
Length:  67652

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
381--421
21
2.0
20
85
4
55
48
24
14
12
1.78
3029--3098
29
2.4
28
75
15
72
58
21
7
12
1.58
4192--4231
21
1.9
21
85
10
55
45
2
5
47
1.38
5956--6011
19
2.8
20
82
12
55
53
5
0
41
1.24
12157--12194
10
3.8
10
86
6
51
15
7
0
76
1.01
12157--12194
20
1.9
20
89
10
60
15
7
0
76
1.01
14742--14784
2
21.0
2
95
4
77
48
2
0
48
1.14
15778--15802
13
1.9
13
100
0
50
36
16
16
32
1.90
15758--15826
32
2.1
33
94
2
122
34
11
17
36
1.86
15864--15888
13
1.9
13
100
0
50
32
16
16
36
1.90
15897--16025
52
2.5
52
93
0
222
36
19
17
27
1.94
21434--21485
19
2.7
20
87
6
79
42
15
13
28
1.85
27415--27498
27
3.1
27
83
8
116
27
7
14
51
1.68
30763--30859
19
5.8
18
72
27
97
32
12
17
37
1.87
30765--30872
32
3.4
32
97
0
198
33
13
17
35
1.90
30784--30873
13
6.0
13
71
26
63
34
14
16
34
1.89
30912--30936
13
1.9
13
100
0
50
32
16
16
36
1.90
30945--31073
52
2.5
52
96
0
240
35
18
17
27
1.94
35190--35350
80
2.0
80
88
0
241
27
21
11
39
1.88
36377--36409
2
16.5
2
100
0
66
51
0
0
48
1.00
36394--36489
35
2.8
34
89
6
115
43
3
4
48
1.37
37517--37569
28
1.9
27
88
3
79
26
5
13
54
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45704--45748
3
15.0
3
100
0
90
66
0
0
33
0.92
46413--46516
30
3.5
30
75
15
99
46
1
15
36
1.57
47857--47926
34
2.0
36
91
5
117
40
10
0
50
1.36
48313--48355
21
2.1
20
83
12
52
51
0
2
46
1.13
48327--48511
88
2.1
90
76
13
197
47
1
4
47
1.31
49707--49782
29
2.6
29
80
16
86
39
2
0
57
1.12
49830--49899
29
2.4
29
85
0
104
45
11
0
42
1.40
51195--51232
20
1.9
20
88
0
58
57
5
15
21
1.57
51335--51359
2
12.5
2
100
0
50
52
0
0
48
1.00
55703--55766
24
2.6
24
71
11
58
60
0
1
37
1.06
56181--56226
15
3.1
15
80
17
51
0
21
2
76
0.90
56450--56536
14
5.8
13
71
23
57
3
21
0
74
0.96
56450--56539
9
9.1
10
77
17
66
3
23
0
73
0.98
56667--56696
14
2.2
13
94
5
51
50
0
6
43
1.28
57079--57124
21
2.2
22
80
11
60
71
2
0
26
0.97
57080--57124
20
2.2
21
88
4
65
71
2
0
26
0.98
58011--58119
26
4.1
27
74
16
95
38
0
0
60
1.03
58045--58081
7
5.1
7
96
3
65
29
0
0
70
0.88
58041--58083
13
3.3
12
81
15
50
27
0
0
72
0.85
58035--58088
14
4.0
14
83
11
60
33
0
0
66
0.92
58748--58796
10
5.1
10
74
16
50
48
0
2
48
1.12
58751--58805
21
2.7
20
78
13
58
52
0
1
45
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58791--58863
23
3.1
22
78
5
74
50
0
2
46
1.15
58828--58865
13
3.1
13
85
7
53
55
0
0
44
0.99
60816--60862
15
2.9
15
81
18
51
68
4
0
27
1.08

Tables:   1

The End!