Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1591
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 32388
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Found at i:6906 original size:79 final size:79
Alignment explanation
Indices: 6731--6916 Score: 207
Period size: 79 Copynumber: 2.4 Consensus size: 79
6721 CGGTGTTCTG
* *
6731 AAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAATAGGGTTGGAGTATCCCTGATTATAGA
1 AAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCCTGATTATAGA
6796 AAATCGATATTTCA
66 AAATCGATATTTCA
* * * * * * *
6810 AAAATAAAATTGAGGTTGGAGTATCCCTTCAAAAATACTGGGGTTGGAGTAT-CATCGATTGT-G
1 AAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCCT-GATTATAG
*
6873 AAAAATCGATGCTTT-A
65 -AAAATCGAT-ATTTCA
* **
6889 GAAATAAGGTCGGGGTTGGAGTATCCCC
1 AAAATAAAATCGGGGTTGGAGTATCCCC
6917 GATTGTGAGA
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
78 3 0.03
79 82 0.93
80 3 0.03
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (79 bp):
AAAATAAAATCGGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCCTGATTATAGA
AAATCGATATTTCA
Found at i:6920 original size:51 final size:51
Alignment explanation
Indices: 6849--6967 Score: 166
Period size: 51 Copynumber: 2.3 Consensus size: 51
6839 CAAAAATACT
** * * *
6849 GGGGTTGGAGTATCATCGATTGTGAAAAATCGATGCTTTAGAAATAAGGTC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGTC
* * *
6900 GGGGTTGGAGTATCCCCGATTGTGAGAAATCAATATTTTGGAAATAAAGTC
1 GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGTC
6951 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
6968 TCAGAAATAA
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.29, C:0.13, G:0.30, T:0.29
Consensus pattern (51 bp):
GGGGTTGGAGTATCCCCGATTGTGAAAAATCAATACTTTAGAAATAAAGTC
Found at i:6984 original size:28 final size:28
Alignment explanation
Indices: 6950--7023 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
6940 GAAATAAAGT
*
6950 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-AATGAAATAA
*
6978 CGGGGTTGGCGTATCCCCAATGAAATAA
1 CGGGGTTGGAGTATCCCCAATGAAATAA
7006 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
7024 GATTGTGAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
27 1 0.02
28 41 0.98
ACGTcount: A:0.24, C:0.23, G:0.31, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCAATGAAATAA
Found at i:7004 original size:158 final size:158
Alignment explanation
Indices: 6849--7153 Score: 378
Period size: 158 Copynumber: 1.9 Consensus size: 158
6839 CAAAAATACT
* ** **
6849 GGGGTTGGAGTATCATCGATTGTGAAAAATCGATGCTTTAGAAATAAGGTCGGGGTTGGAGTATC
1 GGGGTTGGAGTATCACCGATTGTGAAAAATCGATGCTTTAGAAATAAAATCGAAGTTGGAGTATC
* * ** *
6914 CCCGATTGT-GAGAAATCAATATTTTGGAAATAAAGTCGGGGTTGGAGTATCCCCTCAGAAATAA
66 CCCGATTATGGA-AAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATACCCTCAGAAATAA
* *
6978 CGGGGTTGGCGTATCCCCAATGAAATAAC
130 CGGGGTTAGAGTATCCCCAATGAAATAAC
* * * * *
7007 GGGGTTGGAGTATCCCCGATTGTGAACAATTGATGTTTTGGAAATAAAATCGAAGTTGGAGTATC
1 GGGGTTGGAGTATCACCGATTGTGAAAAATCGATGCTTTAGAAATAAAATCGAAGTTGGAGTATC
* ** * * * *
7072 CCTGATTATGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTTGAGTATACCTTTAGAAATAAC
66 CCCGATTATGGAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATACCCTCAGAAATAAC
7137 GGGGTTAGAGTATCCCC
131 GGGGTTAGAGTATCCCC
7154 GACGGTGGAA
Statistics
Matches: 122, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
158 120 0.98
159 2 0.02
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (158 bp):
GGGGTTGGAGTATCACCGATTGTGAAAAATCGATGCTTTAGAAATAAAATCGAAGTTGGAGTATC
CCCGATTATGGAAAATCAATATTTTAGAAATAAAACCGGGGTTGGAGTATACCCTCAGAAATAAC
GGGGTTAGAGTATCCCCAATGAAATAAC
Found at i:7120 original size:51 final size:51
Alignment explanation
Indices: 7006--7121 Score: 153
Period size: 51 Copynumber: 2.3 Consensus size: 51
6996 AATGAAATAA
* * *
7006 CGGGGTTGGAGTATCCCCGATTGTGAACAATTGATGTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTATGAACAATTGATGTTTTAGAAATAAAAC
** *
7057 CGAAGTTGGAGTATCCCTGATTATGGAA-AATTGATGTTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTAT-GAACAATTGATGTTTTAGAAATAAAAC
*
7108 CGGGGTTTGAGTAT
1 CGGGGTTGGAGTAT
7122 ACCTTTAGAA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 52 0.95
52 3 0.05
ACGTcount: A:0.31, C:0.10, G:0.27, T:0.32
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAACAATTGATGTTTTAGAAATAAAAC
Found at i:7296 original size:130 final size:130
Alignment explanation
Indices: 6999--7315 Score: 402
Period size: 130 Copynumber: 2.4 Consensus size: 130
6989 TATCCCCAAT
*
6999 GAAATAACGGGGTTGGAGTATCCCCGATTGTGAACAATTGATGTTTTGGAAATAAAATCGAAGTT
1 GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCGAAGTT
*** * * * * **
7064 GGAGTATCCCTGATTATGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTTGAGTATACCTTTA
66 GGAGTATCCCTGATTACAAAAAAATGATGCTTTAGAAATAAAACCGAGGTTAGAGTATACCTCGA
* ** * * * **
7129 GAAATAACGGGGTTAGAGTATCCCCGACGGTGGAAAATCGATATTTTGGAAATAAAATCGGGGTT
1 GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCGAAGTT
* * *
7194 GGAGTATCCTTGATTACAAAAAAATGATGCTTTAGAAATAAAATCGAGGTTAGAGTATCCCCTCG
66 GGAGTATCCCTGATTACAAAAAAATGATGCTTTAGAAATAAAACCGAGGTTAGAGTAT-ACCTCG
7259 A
130 A
* * *
7260 -AAATAACGGGATTGGAGTATCCCCGATTGTAAAAAATTGGTGTTTTGGAAATAAAA
1 GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAA
7316 ACATGAATGA
Statistics
Matches: 156, Mismatches: 30, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
130 152 0.97
131 4 0.03
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (130 bp):
GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCGAAGTT
GGAGTATCCCTGATTACAAAAAAATGATGCTTTAGAAATAAAACCGAGGTTAGAGTATACCTCGA
Found at i:9763 original size:13 final size:13
Alignment explanation
Indices: 9716--9745 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
9706 GTAAACCAAG
*
9716 AATGTATCGATAT
1 AATGTATCGATAC
9729 AATGTATCGATAC
1 AATGTATCGATAC
9742 AATG
1 AATG
9746 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.10, G:0.17, T:0.33
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:10576 original size:46 final size:42
Alignment explanation
Indices: 10512--10610 Score: 126
Period size: 46 Copynumber: 2.2 Consensus size: 42
10502 AGGATAAAAG
*
10512 AAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGAACTAGAAGAGAA
1 AAAAAGG-AAATAAAGTGCATCCTGCTCTTTGAGAAC-A-AAG-G-A
* *
10559 AAAAAGGAAATGAAGTGCATCCTGCTCTTTGAGGACAAAGGA
1 AAAAAGGAAATAAAGTGCATCCTGCTCTTTGAGAACAAAGGA
10601 AAAAAGGAAA
1 AAAAAGGAAA
10611 AGGCATCTTG
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
42 11 0.22
43 1 0.02
44 3 0.06
45 1 0.02
46 26 0.53
47 7 0.14
ACGTcount: A:0.46, C:0.12, G:0.24, T:0.17
Consensus pattern (42 bp):
AAAAAGGAAATAAAGTGCATCCTGCTCTTTGAGAACAAAGGA
Found at i:10717 original size:61 final size:61
Alignment explanation
Indices: 10638--10963 Score: 301
Period size: 61 Copynumber: 5.5 Consensus size: 61
10628 GGGCAAAGGA
* *
10638 GAAAAGGAAAAGGAATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT
1 GAAAA-GAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * **
10700 GAAAAGAAAAGGCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCATGGGCTTT
1 GAAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * * * * *
10761 GCAAAGAGAAA-GCATCGTACTCTTTGAGGACTG-GAAGTTGCCGCCAACTCGAGTGGTCTTT
1 GAAAAGA-AAAGGCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTTGTGTGGGCTTT
* *
10822 GAAAGGAGAAA-GCATCGTACTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 GAAAAGA-AAAGGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
** *
10883 G---AG---AGGTGTCC-AGCTCTTTGAGGACTGCAAAA-TGCCACCAACTTGTGTGGCCTTT
1 GAAAAGAAAAGGCATCCTA-CTCTTTGAGGACTG-AAAAGTGCCACCAACTTGTGTGGGCTTT
10938 ------AAAAGGCATCCTACTCTTTGAGGACT
1 GAAAAGAAAAGGCATCCTACTCTTTGAGGACT
10964 AAAGGGTGAA
Statistics
Matches: 224, Mismatches: 29, Indels: 29
0.79 0.10 0.10
Matches are distributed among these distances:
54 3 0.01
55 61 0.27
56 1 0.00
58 1 0.00
60 2 0.01
61 145 0.65
62 9 0.04
63 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (61 bp):
GAAAAGAAAAGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:11069 original size:55 final size:55
Alignment explanation
Indices: 10982--11209 Score: 232
Period size: 55 Copynumber: 4.1 Consensus size: 55
10972 AAAGGAGAGA
* * * *
10982 GCGTCCTGCTCTTTAAGGACTGGGAAGTGCCACCAACCTT-TGTGGGCTTT-AAGAG
1 GCGTCCTGCTCTTTGAGGACAGGAAAATGCCACCAA-CTTGTGTGGGCTTTCAA-AG
* * * *
11037 GCATCCTGCTTTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAA
1 GCGTCCTGCTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTCAAAG
** * * *
11092 GCGTCCTGCTCTTTGATCACTA-AAAAATGCCACCAACTTATGTCGGCTTTCAAAG
1 GCGTCCTGCTCTTTGAGGAC-AGGAAAATGCCACCAACTTGTGTGGGCTTTCAAAG
* * *
11147 GCGTCTTGCTCTTTGAGGAC-TGAAAGGTGCCACCAACTTGTGTGGGC-TTCGAAAG
1 GCGTCCTGCTCTTTGAGGACAGGAAA-ATGCCACCAACTTGTGTGGGCTTTC-AAAG
11202 GCGTCCTG
1 GCGTCCTG
11210 TTTTTTTAGG
Statistics
Matches: 143, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
54 9 0.06
55 131 0.92
56 3 0.02
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.28
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTCAAAG
Found at i:11104 original size:149 final size:149
Alignment explanation
Indices: 10821--11107 Score: 380
Period size: 149 Copynumber: 1.9 Consensus size: 149
10811 GAGTGGTCTT
* * *
10821 TGAAAGGAGAAAGCATCGTACTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAG
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAG
** *
10886 AGGTGTCCAGCTCTTTGAGGACTGCAAAATGCCACCAACTTGTGTGGCCTTTAAAAGGCATCCTA
66 AGGCATCCAGCTCTTTGAGGACAGCAAAATGCCACCAACTTGTGTGGCCTTTAAAAGGCATCCTA
10951 CTCTTTGAGGACTAAAGGG
131 CTCTTTGAGGACTAAAGGG
* * * * * *
10970 TGAAAGGAGAGAGCGTCCTGCTCTTTAAGGACTGGGAAGTGCCACCAACCTT-TGTGGGCTTTAA
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAA-CTTGTGTGGGCTTTAA
* * * * *
11034 GAGGCATCCTGCTTTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAA-GCGTCC
65 GAGGCATCCAGCTCTTTGAGGACAGCAAAATGCCACCAACTTGTGTGGCCTTT-AAAAGGCATCC
*
11098 TGCTCTTTGA
129 TACTCTTTGA
11108 TCACTAAAAA
Statistics
Matches: 118, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
149 111 0.94
150 7 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (149 bp):
TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAG
AGGCATCCAGCTCTTTGAGGACAGCAAAATGCCACCAACTTGTGTGGCCTTTAAAAGGCATCCTA
CTCTTTGAGGACTAAAGGG
Found at i:11178 original size:110 final size:110
Alignment explanation
Indices: 11009--11209 Score: 282
Period size: 110 Copynumber: 1.8 Consensus size: 110
10999 GACTGGGAAG
* *
11009 TGCCACCAACCTTTGTGGGCTTTAAGAGGCATCCTGCTTTTTGAGGACAGGAAAATGCCACCAAC
1 TGCCACCAACCTTTGTCGGCTTTAAGAGGCATCCTGCTCTTTGAGGACAGGAAAATGCCACCAAC
*
11074 TTGTGTGGGCTTTGAAAAGCGTCCTGCTCTTTGATCACTAAAAAA
66 TTGTGTGGGCTTCGAAAAGCGTCCTGCTCTTTGATCACTAAAAAA
* * * *
11119 TGCCACCAA-CTTATGTCGGCTTTCAA-AGGCGTCTTGCTCTTTGAGGAC-TGAAAGGTGCCACC
1 TGCCACCAACCTT-TGTCGGCTTT-AAGAGGCATCCTGCTCTTTGAGGACAGGAAA-ATGCCACC
*
11181 AACTTGTGTGGGCTTCGAAAGGCGTCCTG
63 AACTTGTGTGGGCTTCGAAAAGCGTCCTG
11210 TTTTTTTAGG
Statistics
Matches: 80, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
109 7 0.09
110 71 0.89
111 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.28
Consensus pattern (110 bp):
TGCCACCAACCTTTGTCGGCTTTAAGAGGCATCCTGCTCTTTGAGGACAGGAAAATGCCACCAAC
TTGTGTGGGCTTCGAAAAGCGTCCTGCTCTTTGATCACTAAAAAA
Found at i:11225 original size:110 final size:110
Alignment explanation
Indices: 10981--11209 Score: 275
Period size: 110 Copynumber: 2.1 Consensus size: 110
10971 GAAAGGAGAG
* * *** * *
10981 AGCGTCCTGCTCTTTAAGGACTGGGAAGTGCCACCAACCTTTGTGGGCTTTAAGAGGCATCCTGC
1 AGCGTCCTGCTCTTTGAGCACTAAAAAATGCCACCAACCTTTGTCGGCTTTAAGAGGCATCCTGC
* *
11046 TTTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTTGAAA
66 TCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTCGAAA
* * *
11091 AGCGTCCTGCTCTTTGATCACTAAAAAATGCCACCAA-CTTATGTCGGCTTTCAA-AGGCGTCTT
1 AGCGTCCTGCTCTTTGAGCACTAAAAAATGCCACCAACCTT-TGTCGGCTTT-AAGAGGCATCCT
* *
11154 GCTCTTTGAGGAC-TGAAAGGTGCCACCAACTTGTGTGGGCTTCGAAA
64 GCTCTTTGAGGACAGGAAA-ATGCCACCAACTTGTGTGGGCTTCGAAA
*
11201 GGCGTCCTG
1 AGCGTCCTG
11210 TTTTTTTAGG
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
109 7 0.07
110 92 0.91
111 2 0.02
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.28
Consensus pattern (110 bp):
AGCGTCCTGCTCTTTGAGCACTAAAAAATGCCACCAACCTTTGTCGGCTTTAAGAGGCATCCTGC
TCTTTGAGGACAGGAAAATGCCACCAACTTGTGTGGGCTTCGAAA
Found at i:11719 original size:20 final size:20
Alignment explanation
Indices: 11667--11721 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
11657 GTAAACCTAG
11667 AATGTATCGATACAATGAAC
1 AATGTATCGATACAATGAAC
* * *
11687 AATGTTTTGATACAATGAAT
1 AATGTATCGATACAATGAAC
*
11707 AATGTATCAATACAA
1 AATGTATCGATACAA
11722 ATTGTGAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACAATGAAC
Found at i:12396 original size:41 final size:40
Alignment explanation
Indices: 12305--12404 Score: 103
Period size: 40 Copynumber: 2.5 Consensus size: 40
12295 GTCCCACTTT
* * * * *
12305 TTGAGGACAAAGCAAAAGAGAATGAAATAGGTCTTGCTCC
1 TTGAGGACAAAGGAAAAAAGAATAAAAAAGGTCCTGCTCC
* *
12345 TTAAGGACAAAGGAAAAAAGAA-AAAGAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAAAGAATAAA-AAAG-GTCCTGCTCC
12386 TTGAGGACAAAGTGAAAAA
1 TTGAGGACAAAG-GAAAAA
12405 GAGTACGTCC
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 2 0.04
40 22 0.45
41 19 0.39
42 6 0.12
ACGTcount: A:0.46, C:0.12, G:0.24, T:0.18
Consensus pattern (40 bp):
TTGAGGACAAAGGAAAAAAGAATAAAAAAGGTCCTGCTCC
Found at i:12671 original size:61 final size:61
Alignment explanation
Indices: 12597--12902 Score: 265
Period size: 61 Copynumber: 5.1 Consensus size: 61
12587 GGGCAAAGGA
* *
12597 GAAAAGGAAAAGGCATCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCCTT
1 GAAAA-GAAAAGGCATCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
12659 GAAAAGAAAAGGCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCT-TGGGCTTT
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTTG-TGTGGGCTTT
* ** * * * * * * * *
12720 GCAAAGAAAAAACATCCTACTATTTGAGGACTG-GAAGTTGCCACCAACTCGAGCGGTCTTT
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGATTGAAAAG-TGCCACCAACTTGTGTGGGCTTT
* * *
12781 GAAAGGAGAAA-GCATCCTGCTCTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 GAAAAGA-AAAGGCATCCTGCTCTTTGAGGA-TTGAAAAGTGCCACCAACTTGTGTGGGCTTT
** *
12842 G---AG---AGGTGTCCTGCTCTTTGAGGATTGGAAAA-TGCCACCAACTTGGGTGGGCTTT
1 GAAAAGAAAAGGCATCCTGCTCTTTGAGGATT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
*
12897 AAAAAG
1 GAAAAG
12903 CGTCCTTCTC
Statistics
Matches: 197, Mismatches: 36, Indels: 26
0.76 0.14 0.10
Matches are distributed among these distances:
54 2 0.01
55 43 0.22
58 3 0.02
60 2 0.01
61 135 0.69
62 10 0.05
63 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.24
Consensus pattern (61 bp):
GAAAAGAAAAGGCATCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:12823 original size:122 final size:122
Alignment explanation
Indices: 12610--12842 Score: 292
Period size: 122 Copynumber: 1.9 Consensus size: 122
12600 AAGGAAAAGG
* * * * *
12610 CATCCTGCTCTTTGAGGATTGAAAAGTGCCACCAACTCGTGTGGGCCTTGAAAAGAAAAGGCATC
1 CATCCTACTATTTGAGGACTGAAAAGTGCCACCAACTCGAGCGGGCCTTGAAAAGAAAAGGCATC
* * **
12675 CTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCT-TGGGCTTTGCAAAGAAAAAA
66 CTACTCTTTAAGGACTAGAAAATGCCACCAACTTG-TGTGGGCTTTGCAAAGAAAAAA
* * * *
12732 CATCCTACTATTTGAGGACTG-GAAGTTGCCACCAACTCGAGCGGTCTTTGAAAGGAGAAA-GCA
1 CATCCTACTATTTGAGGACTGAAAAG-TGCCACCAACTCGAGCGGGCCTTGAAAAGA-AAAGGCA
*
12795 TCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
64 TCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
12843 AGAGGTGTCC
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
121 4 0.04
122 87 0.93
123 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (122 bp):
CATCCTACTATTTGAGGACTGAAAAGTGCCACCAACTCGAGCGGGCCTTGAAAAGAAAAGGCATC
CTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGCAAAGAAAAAA
Found at i:12879 original size:55 final size:55
Alignment explanation
Indices: 12789--12923 Score: 180
Period size: 55 Copynumber: 2.5 Consensus size: 55
12779 TTGAAAGGAG
* * * *
12789 AAAGCATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGA
1 AAAGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGGGTGGGCTTTAA
* * * * *
12844 GAGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGGGTGGGCTTTAA
1 AAAGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGGGTGGGCTTTAA
*
12899 AAAGCGTCCTTCTCTTTGAGGACTA
1 AAAGCGTCCTGCTCTTTGAGGACTA
12924 AAAGGTGAAA
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
55 65 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (55 bp):
AAAGCGTCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGGGTGGGCTTTAA
Found at i:13016 original size:94 final size:95
Alignment explanation
Indices: 12850--13021 Score: 240
Period size: 94 Copynumber: 1.8 Consensus size: 95
12840 TTGAGAGGTG
* * * *
12850 TCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGGGTGGGCTTTAAAAAGCGTCCTTCTCTT
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACCTGGGTGGGCTTTAAAAAGCATCCTTCTCTT
12915 TGAGGACT-AAAAGGTGAAAGGAGAGAACA
66 TGAGGACTGAAAAGGTGAAAGGAGAGAACA
* * * * *
12944 TCCTACTCTTTGAGGACTGGGAAGTGCCACCAACCTGTGTGGGCTTTAAGAGGCAT-CTTGCTCT
1 TCCTACTCTTTGAGGACTGGAAAATGCCACCAACCTGGGTGGGCTTTAAAAAGCATCCTT-CTCT
13008 TTGAGGACTGAAAA
65 TTGAGGACTGAAAA
13022 ATGCCAGCAA
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
93 3 0.04
94 60 0.90
95 4 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (95 bp):
TCCTACTCTTTGAGGACTGGAAAATGCCACCAACCTGGGTGGGCTTTAAAAAGCATCCTTCTCTT
TGAGGACTGAAAAGGTGAAAGGAGAGAACA
Found at i:13038 original size:55 final size:55
Alignment explanation
Indices: 12942--13181 Score: 250
Period size: 55 Copynumber: 4.4 Consensus size: 55
12932 AAGGAGAGAA
* ** * *
12942 CATCCTACTCTTTGAGGACTGGGAAGTGCCACCAACCTGTGTGGGCTTT-AAGAGG
1 CATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGG
* *
12997 CATCTTGCTCTTTGAGGACTGAAAAATGCCAGCAACTTGTGTGGGCTTTGAAAGG
1 CATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
* * * **
13052 CATCCTGCTCTTTGAGGACTAAAAAATGCCACCAGCTTGTGTCGAATTTGAAAGG
1 CATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
* * * * ** * * *
13107 CGTCCTTCTCTGTAAGGACTGAAAGGTGCCATCAACTGGTGTAGGCTTTGAAAGG
1 CATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
*
13162 CGTCCTGCTCGTTT-AGGACT
1 CATCCTGCTC-TTTGAGGACT
13182 AAAGGGTGAA
Statistics
Matches: 154, Mismatches: 29, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
55 150 0.97
56 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (55 bp):
CATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGG
Found at i:13063 original size:149 final size:149
Alignment explanation
Indices: 12780--13075 Score: 414
Period size: 149 Copynumber: 2.0 Consensus size: 149
12770 GAGCGGTCTT
* * *
12780 TGAAAGGAGAAAGCATCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAG
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACCTGTGTGGGCTTTAAG
** * * * *
12845 AGGTGTCCTGCTCTTTGAGGATTGGAAAATGCCACCAACTTGGGTGGGCTTTAAAAAGCGTCCTT
66 AGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTAAAAAGCATCCTG
12910 CTCTTTGAGGACTAAAAGG
131 CTCTTTGAGGACTAAAAGG
* * * *
12929 TGAAAGGAGAGAA-CATCCTACTCTTTGAGGACTGGGAAGTGCCACCAACCTGTGTGGGCTTTAA
1 TGAAAGGAGA-AAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACCTGTGTGGGCTTTAA
* * * * *
12993 GAGGCATCTTGCTCTTTGAGGACTGAAAAATGCCAGCAACTTGTGTGGGCTTTGAAAGGCATCCT
65 GAGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTAAAAAGCATCCT
13058 GCTCTTTGAGGACTAAAA
130 GCTCTTTGAGGACTAAAA
13076 AATGCCACCA
Statistics
Matches: 128, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
149 126 0.98
150 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (149 bp):
TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACCTGTGTGGGCTTTAAG
AGGCATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGGGTGGGCTTTAAAAAGCATCCTG
CTCTTTGAGGACTAAAAGG
Found at i:13112 original size:204 final size:207
Alignment explanation
Indices: 12730--13134 Score: 507
Period size: 204 Copynumber: 2.0 Consensus size: 207
12720 GCAAAGAAAA
*
12730 AACATCCTACTATTTGAGGACTGGAAGTTGCCACCAACTCGAGCGGTCTTTGAAAGGAGAAAGCA
1 AACATCCTACTATTTGAGGACTGGAAGTTGCCACCAACTCGAGCGGGCTTT-AAAGGAG--AGCA
* **
12795 TCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTT
63 TCCTGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
* ** * ** * *
12860 TGAGGATTGGAAAATGCCACCAACTTGGGTGGGCTTTAAAAAGCGTCCTTCTCTTTGAGGACTAA
128 TGAGGACTAAAAAATGCCACCAACTTGGGTCGAATTTAAAAAGCGTCCTTCTCTGTAAGGACTAA
12925 AAGGTGAAAGGAGAG
193 AAGGTGAAAGGAGAG
* * *
12940 AACATCCTACTCTTTGAGGACTGGGAAG-TGCCACCAAC-CTGTGTGGGCTTT-AA-GAG-GCAT
1 AACATCCTACTATTTGAGGACT-GGAAGTTGCCACCAACTC-GAGCGGGCTTTAAAGGAGAGCAT
* * *
13000 CTTGCTCTTTGAGGACT-GAAAAATGCCAGCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
64 CCTGCTCTTTAAGGACTAG-AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTT
* * * * *
13064 TGAGGACTAAAAAATGCCACCAGCTTGTGTCGAATTTGAAAGGCGTCCTTCTCTGTAAGGACTGA
128 TGAGGACTAAAAAATGCCACCAACTTGGGTCGAATTTAAAAAGCGTCCTTCTCTGTAAGGACTAA
13129 AAGGTG
193 AAGGTG
13135 CCATCAACTG
Statistics
Matches: 169, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
203 1 0.01
204 118 0.70
207 3 0.02
208 2 0.01
209 1 0.01
210 39 0.23
211 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (207 bp):
AACATCCTACTATTTGAGGACTGGAAGTTGCCACCAACTCGAGCGGGCTTTAAAGGAGAGCATCC
TGCTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
GGACTAAAAAATGCCACCAACTTGGGTCGAATTTAAAAAGCGTCCTTCTCTGTAAGGACTAAAAG
GTGAAAGGAGAG
Found at i:14376 original size:42 final size:43
Alignment explanation
Indices: 14314--14467 Score: 109
Period size: 42 Copynumber: 3.6 Consensus size: 43
14304 CCTGCTTTTG
*
14314 GAGGACAAAGGAAAAAAGGAAAACGAAA-TGCATCCTCCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAA-GAAAGTGCATCCTCCTCTTT
* * ** * *
14357 GAGGACAAAAG-AAATAGGAAAATAAAGTGTGTCTTGCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAAGAAAGTGCATCCTCCTCTTT
* ** *
14399 GAGGACAAAAGGGAAAAGAA-GAGAATG-AAGTGTGTCCTGCTCTTT
1 GAGGACAAAA--GAAAA-AAGGA-AAAGAAAGTGCATCCTCCTCTTT
* * *
14444 GAGGACTAAGGAGAAAAGGAAAAG
1 GAGGACAAAAGAAAAAAGGAAAAG
14468 GCGTCCTGCT
Statistics
Matches: 89, Mismatches: 15, Indels: 15
0.75 0.13 0.13
Matches are distributed among these distances:
41 3 0.03
42 36 0.40
43 16 0.18
44 1 0.01
45 30 0.34
46 3 0.03
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAAGGAAAAGAAAGTGCATCCTCCTCTTT
Found at i:14443 original size:45 final size:43
Alignment explanation
Indices: 14346--14492 Score: 139
Period size: 45 Copynumber: 3.5 Consensus size: 43
14336 ACGAAATGCA
* *
14346 TCCTCCTCTTTGAGGACAAAA-GAAATAG--GAAAATAAAGTGTG
1 TCCTGCTCTTTGAGGACAAAAGGAAA-AGAAGAGAAT-AAGTGTG
*
14388 TCTTGCTCTTTGAGGACAAAAGGGAAAAGAAGAGAATGAAGTGTG
1 TCCTGCTCTTTGAGGACAAAA-GGAAAAGAAGAGAAT-AAGTGTG
* * *
14433 TCCTGCTCTTTGAGGAC-TAAGGAGAA-AAG-GAA-AAG-GCG
1 TCCTGCTCTTTGAGGACAAAAGGAAAAGAAGAGAATAAGTGTG
14471 TCCTGCTCTTTGAGGACTAAAA
1 TCCTGCTCTTTGAGGAC-AAAA
14493 AGTGCCACCA
Statistics
Matches: 90, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
38 19 0.21
39 3 0.03
40 2 0.02
41 3 0.03
42 22 0.24
43 7 0.08
44 6 0.07
45 28 0.31
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (43 bp):
TCCTGCTCTTTGAGGACAAAAGGAAAAGAAGAGAATAAGTGTG
Found at i:14536 original size:61 final size:59
Alignment explanation
Indices: 14457--14838 Score: 391
Period size: 61 Copynumber: 6.4 Consensus size: 59
14447 GACTAAGGAG
* *
14457 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACTAAAAA-TGCCACCAACTTGTGTGGGCTTT
* * ** *
14518 GAAAAGAAAAGGCATCCTGCTCTTTGGGGACTGGAAGGTGCCACCAATTTGTGTGGGCTTT
1 -AAAAGAAAAGGCATCCTGCTCTTTGAGGACT-AAAAATGCCACCAACTTGTGTGGGCTTT
* * ** * * * *
14579 GCAAAGAGAAA-GCATCTTGCTCTTTGAGGACTAGAAGGTGCCACTAACTCGAGTGGTCTTT
1 -AAAAGA-AAAGGCATCCTGCTCTTTGAGGACTA-AAAATGCCACCAACTTGTGTGGGCTTT
* *
14640 ACAAGGAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 A-AAAGA-AAAGGCATCCTGCTCTTTGAGGACT-AAAAATGCCACCAACTTGTGTGGGCTTT
*
14701 ----G-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 AAAAGAAAAGGCATCCTGCTCTTTGAGGACT-AAAAATGCCACCAACTTGTGTGGGCTTT
* * *
14756 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACCAGAAAATGCTACCAACTTGTGTGGGCTTT
1 AAAA-GAAAAGGCATCCTGCTCTTTGAGGACTA-AAAATGCCACCAACTTGTGTGGGCTTT
*
14817 AAAAGGAAAAGGCATCTTGCTC
1 AAAA-GAAAAGGCATCCTGCTC
14839 CTAAGGGACT
Statistics
Matches: 275, Mismatches: 32, Indels: 27
0.82 0.10 0.08
Matches are distributed among these distances:
54 3 0.01
55 50 0.18
56 1 0.00
60 1 0.00
61 211 0.77
62 9 0.03
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (59 bp):
AAAAGAAAAGGCATCCTGCTCTTTGAGGACTAAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:14611 original size:122 final size:120
Alignment explanation
Indices: 14474--14838 Score: 440
Period size: 122 Copynumber: 3.0 Consensus size: 120
14464 AAAGGCGTCC
14474 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCATCCTGCT
1 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGAAAAGGCATCCTGCT
* ** *
14539 CTTTGGGGACTGGAAGGTGCCACCAATTTGTGTGGGCTTTGCAAAGAGAAAGCATCT
65 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGAGAAAGCATCT
* * * * * *
14596 TGCTCTTTGAGGACTAGAAGGTGCCACTAACTCGAGTGGTCTTTACAAGGAGAAA-GCATCCTGC
1 TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTA-AAAGA-AAAGGCATCCTGC
*
14660 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AA-AG---GCATCC
64 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCT
* * *
14712 TGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
1 TGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTAAAA-GAAAAGGCATCCTGC
** * *
14776 TCTTTGAGGACCAGAAAATGCTACCAACTTGTGTGGGCTTTAAAAG-GAAAAGGCATCT
64 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAG-AAA-GCATCT
14834 TGCTC
1 TGCTC
14839 CTAAGGGACT
Statistics
Matches: 206, Mismatches: 25, Indels: 24
0.81 0.10 0.09
Matches are distributed among these distances:
115 5 0.02
116 88 0.43
117 5 0.02
119 2 0.01
120 2 0.01
121 1 0.00
122 100 0.49
123 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (120 bp):
TGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAGGCATCCTGCTC
TTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAGAAAGCATCT
Found at i:14730 original size:55 final size:55
Alignment explanation
Indices: 14647--14822 Score: 246
Period size: 55 Copynumber: 3.1 Consensus size: 55
14637 TTTACAAGGA
14647 GAAA-GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
14701 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
* ** *
14756 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACCAGAAAATGCTACCAACTTGTGTGGGCTTT
1 -----G-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
*
14817 AAAAGG
1 GAAAGG
14823 AAAAGGCATC
Statistics
Matches: 110, Mismatches: 5, Indels: 13
0.86 0.04 0.10
Matches are distributed among these distances:
54 4 0.04
55 55 0.50
60 1 0.01
61 50 0.45
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (55 bp):
GAAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT
Found at i:14780 original size:116 final size:115
Alignment explanation
Indices: 14464--14822 Score: 434
Period size: 116 Copynumber: 3.0 Consensus size: 115
14454 GAGAAAAGGA
* *
14464 AAAGGCGTCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAA
1 AAAGGCATCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTCGTGTGGGCTTT-AAAAGGAAAA
* ** *
14528 GGCATCCTGCTCTTTGGGGACTGGAAGGTGCCACCAATTTGTGTGGGCTTTG
64 GGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
* ** * * * *
14580 CAAAGAGAAAGCATCTTGCTCTTTGAGGACTAGAAGGTGCCACTAACTCGAGTGGTCTTTACAAG
1 --AA-AG---GCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTCGTGTGGGCTTTAAAAG
14645 GAGAAA-GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
59 GA-AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
*
14702 AAAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 AAAGGCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAG
* ** * *
14767 GCGTCCTGCTCTTTGAGGACCAGAAAATGCTACCAACTTGTGTGGGCTTTA
65 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
14818 AAAGG
1 AAAGG
14823 AAAAGGCATC
Statistics
Matches: 206, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
115 3 0.01
116 99 0.48
118 2 0.01
119 4 0.02
120 2 0.01
121 3 0.01
122 88 0.43
123 5 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (115 bp):
AAAGGCATCCTGCTCTTTGAGGACTGAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGG
CATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG
Found at i:14954 original size:55 final size:55
Alignment explanation
Indices: 14867--15055 Score: 254
Period size: 55 Copynumber: 3.4 Consensus size: 55
14857 AAAGGAGAGA
* * ** **
14867 GCGTCCTGCTTTTTGAGGATTGGGAA-ATGCCACCAACTTGTGTGGGCTTCAAAAG
1 GCGTCCTGCTCTTTGAGGACT-AAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
* *
14922 GCGTCCTGCTCTTTAAGGACTAAAATATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
14977 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTAAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
15032 GCGTCCTGCTCTTTGAGGACTAAA
1 GCGTCCTGCTCTTTGAGGACTAAA
15056 GGGTGAAATG
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
54 2 0.02
55 116 0.98
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTAAAAGATGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:16147 original size:12 final size:11
Alignment explanation
Indices: 16115--16162 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
16105 CTTAAGCAGG
16115 TTCTTTTCTTTT
1 TTCTTTT-TTTT
*
16127 TTC--TCTTTT
1 TTCTTTTTTTT
16136 TTCTTTTTTTT
1 TTCTTTTTTTT
*
16147 TTGTTTTTTTT
1 TTCTTTTTTTT
16158 TTCTT
1 TTCTT
16163 AAATGTGGGA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
9 7 0.23
10 1 0.03
11 19 0.63
12 3 0.10
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.85
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:16158 original size:21 final size:21
Alignment explanation
Indices: 16115--16157 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
16105 CTTAAGCAGG
16115 TTCTTTTCTTTTTTCTCTTTT
1 TTCTTTTCTTTTTTCTCTTTT
* *
16136 TTCTTTT-TTTTTTGTTTTTT
1 TTCTTTTCTTTTTTCTCTTTT
16156 TT
1 TT
16158 TTCTTAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (21 bp):
TTCTTTTCTTTTTTCTCTTTT
Found at i:18902 original size:24 final size:26
Alignment explanation
Indices: 18875--18923 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
18865 ATCAAAATTT
18875 ATTCAT-C-GGGGACACTCCAACCTC
1 ATTCATCCAGGGGACACTCCAACCTC
*
18899 ATTCCTCCGAGGGGACACTCCAACC
1 ATTCATCC-AGGGGACACTCCAACC
18924 CCGTTTTCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 1 0.05
27 15 0.71
ACGTcount: A:0.24, C:0.39, G:0.18, T:0.18
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCTC
Found at i:25039 original size:30 final size:31
Alignment explanation
Indices: 25003--25133 Score: 133
Period size: 31 Copynumber: 4.3 Consensus size: 31
24993 ATACCTTCTT
25003 AAAGTCCACGACTCAGTGGCATTTTGTC-CC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTCC
* *
25033 AAAGTCCACGACTCAGTGACATTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTCC
* * * * * *
25064 AAAGTCCACAACTCAGTGGCAATCTCTTTTC
1 AAAGTCCACGACTCAGTGGCATTTTGTCTCC
* *
25095 AAAGTCCAAGACTCAG-GGCATCTTT-TCTTC
1 AAAGTCCACGACTCAGTGGCAT-TTTGTCTCC
*
25125 AAAGCCCAC
1 AAAGTCCAC
25134 AACTTTGTGG
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
30 41 0.49
31 42 0.51
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTGTCTCC
Found at i:25069 original size:31 final size:31
Alignment explanation
Indices: 25003--25133 Score: 144
Period size: 30 Copynumber: 4.3 Consensus size: 31
24993 ATACCTTCTT
*
25003 AAAGTCCACGACTCAGTGGCATTTTGTC-CC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
*
25033 AAAGTCCACGACTCAGTGACATTTTTTCTCC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
* *
25064 AAAGTCCACAACTCAGTGGCAATCTCTTT-T-C
1 AAAGTCCACGACTCAGTGGC-AT-TTTTTCTCC
* * *
25095 AAAGTCCAAGACTCAG-GGCATCTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATTTTTTCTCC
*
25125 AAAGCCCAC
1 AAAGTCCAC
25134 AACTTTGTGG
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
28 3 0.04
29 3 0.04
30 37 0.44
31 35 0.41
32 3 0.04
33 4 0.05
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATTTTTTCTCC
Found at i:25121 original size:61 final size:61
Alignment explanation
Indices: 25003--25137 Score: 159
Period size: 61 Copynumber: 2.2 Consensus size: 61
24993 ATACCTTCTT
* * *
25003 AAAGTCCACGACTCAGTGGCATTTTGTCCCAAAGTCCACGACTCAGTGACATTTTTTCTCC
1 AAAGTCCACAACTCAGTGGCATTTTGTCCCAAAGTCCAAGACTCAGTGACATCTTTTCTCC
* * *
25064 AAAGTCCACAACTCAGTGGCAATCTCTT-T-TCAAAGTCCAAGACTCAG-GGCATCTTTTCTTC
1 AAAGTCCACAACTCAGTGGC-AT-T-TTGTCCCAAAGTCCAAGACTCAGTGACATCTTTTCTCC
*
25125 AAAGCCCACAACT
1 AAAGTCCACAACT
25138 TTGTGGCACC
Statistics
Matches: 64, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
61 42 0.66
62 18 0.28
63 2 0.03
64 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (61 bp):
AAAGTCCACAACTCAGTGGCATTTTGTCCCAAAGTCCAAGACTCAGTGACATCTTTTCTCC
Found at i:25178 original size:34 final size:35
Alignment explanation
Indices: 25122--25214 Score: 103
Period size: 34 Copynumber: 2.9 Consensus size: 35
25112 GCATCTTTTC
**
25122 TTCAAAGCCCACAACTTTGTGGCACCCTTTTC-TT
1 TTCAAAGCCCACAACTCCGTGGCACCCTTTTCATT
25156 TTCAAAGCCCACAACTCCGTGGCA------TCATT
1 TTCAAAGCCCACAACTCCGTGGCACCCTTTTCATT
*
25185 TT-AAAGTCCACAACTCCGTGGCACCCTTTT
1 TTCAAAGCCCACAACTCCGTGGCACCCTTTT
25215 AAGTCCACAA
Statistics
Matches: 49, Mismatches: 3, Indels: 14
0.74 0.05 0.21
Matches are distributed among these distances:
28 22 0.45
29 4 0.08
34 23 0.47
ACGTcount: A:0.24, C:0.33, G:0.13, T:0.30
Consensus pattern (35 bp):
TTCAAAGCCCACAACTCCGTGGCACCCTTTTCATT
Found at i:25195 original size:28 final size:28
Alignment explanation
Indices: 25154--25236 Score: 123
Period size: 28 Copynumber: 3.0 Consensus size: 28
25144 CACCCTTTTC
*
25154 TTTTCAAAGCCCACAACTCCGTGGCATCA
1 TTTT-AAAGTCCACAACTCCGTGGCATCA
* *
25183 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTTAAAGTCCACAACTCCGTGGCATCA
25211 TTTT-AAGTCCACAACTCCGTGGCATC
1 TTTTAAAGTCCACAACTCCGTGGCATC
25237 TTTCTCCTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 21 0.42
28 25 0.50
29 4 0.08
ACGTcount: A:0.25, C:0.34, G:0.14, T:0.27
Consensus pattern (28 bp):
TTTTAAAGTCCACAACTCCGTGGCATCA
Found at i:25339 original size:49 final size:49
Alignment explanation
Indices: 25279--26178 Score: 892
Period size: 49 Copynumber: 18.6 Consensus size: 49
25269 GGCATCTTCT
25279 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * *
25328 TTTAAGACCAATGTTGCTGGCCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
25371 TTTAAGTCCAATATCACTGGCCATGAATTAGCATATTGGCACCTTGC--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-CATC
* * * *
25419 TTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGG------CA-C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
25461 ---AAG-CCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATC
1 TTTAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
*
25510 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
25559 TTTAAGTCCAGTATCGCTGGCTTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* *
25611 TTTAAGTCCAATGTCGCTGGCCTTGAATCAACATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
25660 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTAGCGCCTATGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * * *
25712 TTTAAGACCAATGTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
25761 TTTAAGTCTAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
*
25813 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * *
25862 TTTAAGTCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * * *
25914 TTTAAGACCAATGTCGCTGGCCTTGAATCGGCACATTGGCACCTT-ATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
25962 TTTAAG-CACAATATCGCTGGTCTTGAATCAGCATATTGGCACCTT-GTC
1 TTTAAGTC-CAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * * *
26010 TTTAAGACTAATGTTGCTGGCCTTGAATCAGCACATTGG------CA-C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * * *
26052 ---AAGCCCAATATTGTTGGCCTTGAATCAGCATATTAGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* *
26101 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
26150 TTTAAGTCCAGTATCGCAGGCCTTGAATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATC
26179 TGCACTGTGG
Statistics
Matches: 705, Mismatches: 97, Indels: 98
0.78 0.11 0.11
Matches are distributed among these distances:
38 2 0.00
39 58 0.08
41 1 0.00
42 2 0.00
43 35 0.05
45 1 0.00
47 1 0.00
48 116 0.16
49 243 0.34
50 6 0.01
51 4 0.01
52 234 0.33
53 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
Found at i:25646 original size:101 final size:101
Alignment explanation
Indices: 25467--26178 Score: 1042
Period size: 101 Copynumber: 7.2 Consensus size: 101
25457 GCACAAGCCT
* *
25467 AGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
25532 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
25568 AGTATCGCTGGCTTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
* *
25633 TTGAATCAACATATTGGCACCTTCATCTTTAAGTCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
25669 AGTATCGCTGGCCTTGAATCAGCATATTAGCGCCTATGTCATCTTTAAGACCAATGTCGCTAGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
25734 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCT
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
25770 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
* *
25835 TTGAATCAGCATATTGGCACCTTCATCTTTAAGTCT
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
25871 AGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
25936 TTGAATCGGCACATTGGCACCTT-ATCTTTAAG-CAC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTC-C
* * * * * *
25971 AATATCGCTGGTCTTGAATCAGCATATTGGCACC-TTG---TCTTTAAGACTAATGTTGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
*
26032 TTGAATCAGCACATTGG------CA-C---AAGCCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
26058 AATATTGTTGGCCTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
1 AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
26123 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
66 TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
26159 AGTATCGCAGGCCTTGAATC
1 AGTATCGCTGGCCTTGAATC
26179 TGCACTGTGG
Statistics
Matches: 550, Mismatches: 44, Indels: 34
0.88 0.07 0.05
Matches are distributed among these distances:
87 33 0.06
88 4 0.01
90 1 0.00
91 39 0.07
96 38 0.07
97 2 0.00
98 1 0.00
99 3 0.01
100 39 0.07
101 390 0.71
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (101 bp):
AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCC
TTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:25754 original size:202 final size:192
Alignment explanation
Indices: 25279--26178 Score: 1111
Period size: 202 Copynumber: 4.7 Consensus size: 192
25269 GGCATCTTCT
* *
25279 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATCTTTAAGACCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
* * * * *
25341 TTGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCACTGGCCATGAATT
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
*
25400 AGCATATTGGCACCTTGC-CTTTAAGACCAATGTCGCTGGCCTTGAATTAGCACATTGGCAC
131 AGCATATTGGCACCTTGCTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* *
25461 ---AAG-CCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGTCCAAT
1 TTTAAGTCC-AGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAAT
* *
25522 GTCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCTTTGAAT
65 GTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAAT
* * * *
25587 CAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACATATTGGCA
130 CAGCATATTGGCACC-TTG-C-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG--
25652 CCTTCATC
190 ----CA-C
* * *
25660 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTAGCGCCTATGTCATCTTTAAGACCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
* *
25725 TCGCTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCTAGTATCGCTGGCCTTGAATC
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
* * *
25790 AGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCATATTGGCAC
131 AGCATATTGGCACC-TTG-C-TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG---
25855 CTTCATC
190 ---CA-C
* *
25862 TTTAAGTCTAGTATCGCTAGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
* * *
25927 TCGCTGGCCTTGAATCGGCACATTGGCACCTT-ATCTTTAAG-CACAATATCGCTGGTCTTGAAT
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC-CAGTATCGCTGGCCTTGAAT
* *
25990 CAGCATATTGGCACCTTG-TCTTTAAGACTAATGTTGCTGGCCTTGAATCAGCACATTGGCAC
130 CAGCATATTGGCACCTTGCTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * * * * *
26052 ---AAGCCCAATATTGTTGGCCTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATG
1 TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
*
26114 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCAGGCCTTGAATC
66 TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
26179 TGCACTGTGG
Statistics
Matches: 636, Mismatches: 54, Indels: 50
0.86 0.07 0.07
Matches are distributed among these distances:
178 2 0.00
179 34 0.05
181 1 0.00
182 43 0.07
186 1 0.00
187 84 0.13
188 65 0.10
189 4 0.01
190 2 0.00
191 2 0.00
192 36 0.06
197 37 0.06
198 2 0.00
199 1 0.00
200 4 0.01
201 40 0.06
202 276 0.43
203 2 0.00
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (192 bp):
TTTAAGTCCAGTATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTATCATCTTTAAGACCAATG
TCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCTGGCCTTGAATC
AGCATATTGGCACCTTGCTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:26190 original size:49 final size:49
Alignment explanation
Indices: 26067--26191 Score: 144
Period size: 49 Copynumber: 2.5 Consensus size: 49
26057 CAATATTGTT
* * * * *
26067 GGCCTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATGTCGCT
1 GGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATATCGCA
*
26119 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAGTATCGCA
1 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCA
*
26168 GGCCTTGAATCTGCAC-TGTGGCAC
1 GGCCTTGAATCAGCACAT-TGGCAC
26192 ATTGCAAAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
48 1 0.02
49 41 0.63
50 1 0.02
52 22 0.34
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.30
Consensus pattern (49 bp):
GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCA
Found at i:28536 original size:42 final size:43
Alignment explanation
Indices: 28474--28627 Score: 109
Period size: 42 Copynumber: 3.6 Consensus size: 43
28464 CCTGCTTTTC
*
28474 GAGGACAAAGGAAAAAAGGAAAACGAAA-TGCATCCTCCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAA-GAAAGTGCATCCTCCTCTTT
* * ** * *
28517 GAGGACAAAAG-AAATAGGAAAATAAAGTGTGTCTTGCTCTTT
1 GAGGACAAAAGAAAAAAGGAAAAGAAAGTGCATCCTCCTCTTT
* ** *
28559 GAGGACAAAAGGGAAAAGAA-GAGAATG-AAGTGTGTCCTGCTCTTT
1 GAGGACAAAA--GAAAA-AAGGA-AAAGAAAGTGCATCCTCCTCTTT
* * *
28604 GAGGACTAAGGAGAAAAGGAAAAG
1 GAGGACAAAAGAAAAAAGGAAAAG
28628 GCATCTTGCT
Statistics
Matches: 89, Mismatches: 15, Indels: 15
0.75 0.13 0.13
Matches are distributed among these distances:
41 3 0.03
42 36 0.40
43 16 0.18
44 1 0.01
45 30 0.34
46 3 0.03
ACGTcount: A:0.43, C:0.12, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAAGGAAAAGAAAGTGCATCCTCCTCTTT
Found at i:28603 original size:45 final size:42
Alignment explanation
Indices: 28462--28626 Score: 131
Period size: 45 Copynumber: 3.8 Consensus size: 42
28452 AAAAGAGTAC
* * * *
28462 GTCCTGCT-TTTCGAGGACAAAGGAAAAAAGGAAAACGAAA-TGC
1 GTCCTGCTCTTT-GAGGACAAAAG-AAATAGGAAAA-TAAAGTGT
* *
28505 ATCCTCCTCTTTGAGGACAAAAGAAATAGGAAAATAAAGTGT
1 GTCCTGCTCTTTGAGGACAAAAGAAATAGGAAAATAAAGTGT
* * *
28547 GTCTTGCTCTTTGAGGACAAAAGGGAAA-AGAAGAGAATGAAGTGT
1 GTCCTGCTCTTTGAGGACAAAA--GAAATAG--GAAAATAAAGTGT
*
28592 GTCCTGCTCTTTGAGGACTAAGGAGAAA-AGGAAAA
1 GTCCTGCTCTTTGAGGAC-AA-AAGAAATAGGAAAA
28627 GGCATCTTGC
Statistics
Matches: 100, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
41 3 0.03
42 31 0.31
43 22 0.22
44 7 0.07
45 34 0.34
46 2 0.02
47 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.26, T:0.21
Consensus pattern (42 bp):
GTCCTGCTCTTTGAGGACAAAAGAAATAGGAAAATAAAGTGT
Found at i:28725 original size:61 final size:60
Alignment explanation
Indices: 28665--28899 Score: 235
Period size: 61 Copynumber: 3.9 Consensus size: 60
28655 AAAGGAAAAG
* * *
28665 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGTGTGTGCCTTGAAAAGA-AAA
1 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTCGAGTG-GCTTTGAAAAGAGAAA
* * * * * * *
28725 GGCGTCCTACTCTTTGAGAACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGCAAAA-AGAAA
1 -GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTCGAGT-GGCTTTG-AAAAGAGAAA
* * *
28787 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAA
1 GCATCCTACTCTTTAAGGACTGAAAAG-TGCCACCAACTCGAGTGG-CTTTGAAAAGAGAAA
* *
28848 GCATCCTACTCTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTGA
1 GCATCCTACTCTTTAAGGACT-GAAAAGTGCCACCAACTCGAGT-GGCTTTGA
28900 GAGGTGTCCT
Statistics
Matches: 145, Mismatches: 20, Indels: 18
0.79 0.11 0.10
Matches are distributed among these distances:
60 7 0.05
61 125 0.86
62 11 0.08
63 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (60 bp):
GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACTCGAGTGGCTTTGAAAAGAGAAA
Found at i:28882 original size:122 final size:122
Alignment explanation
Indices: 28665--28898 Score: 303
Period size: 122 Copynumber: 1.9 Consensus size: 122
28655 AAAGGAAAAG
* *
28665 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGTGTGTGCCTTGAAAAGAAAAGGCGT
1 GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGAGTGTGCCTTGAAAAGAAAAGGCAT
* * **
28730 CCTACTCTTTGAGAACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAA
66 CCTACTCTTTAAGAACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAA
* * * * *
28787 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTG-GTCTTTGAAAGGAGAAA-G
1 GCATCCTACTCTTTAAGGACTGAAAAG-TGCCACCAACACGAGTGTG-CCTTGAAAAGA-AAAGG
* *
28849 CATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
63 CATCCTACTCTTTAAGAACTAGAAAATGCCACCAACTTGCGTGGGCTTTG
28899 AGAGGTGTCC
Statistics
Matches: 96, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
121 4 0.04
122 89 0.93
123 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (122 bp):
GCATCCTACTCTTTAAGGACTGAAAAGTGCCACCAACACGAGTGTGCCTTGAAAAGAAAAGGCAT
CCTACTCTTTAAGAACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAA
Found at i:28940 original size:55 final size:55
Alignment explanation
Indices: 28850--28979 Score: 206
Period size: 55 Copynumber: 2.4 Consensus size: 55
28840 AGGAGAAAGC
* * * *
28850 ATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
* *
28905 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
1 ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
28960 ATCCTGCTCTTTGAGGACTA
1 ATCCTGCTCTTTGAGGACTA
28980 AAAGGTGAAA
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
55 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.30
Consensus pattern (55 bp):
ATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGT
Found at i:29106 original size:148 final size:149
Alignment explanation
Indices: 28836--29130 Score: 486
Period size: 148 Copynumber: 2.0 Consensus size: 149
28826 GAGTGGTCTT
*
28836 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAG
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAG
** *
28901 AGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTATCCTG
66 AGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTG
28966 CTCTTTGAGGACTAAAAGG
131 CTCTTTGAGGACTAAAAGG
* * *
28985 TGAAAGGAGAGAGCATCCTACTCTTTAAGGACT-GGAAGTGCCACCAACCTT-TGTGGGCTTTAA
1 TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAA-CTTGTGTGGGCTTTAA
* *
29048 GAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCT
65 GAGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCT
29113 GCTCTTTGAGGACTAAAA
130 GCTCTTTGAGGACTAAAA
29131 AATGCCACCA
Statistics
Matches: 136, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
148 101 0.74
149 35 0.26
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (149 bp):
TGAAAGGAGAAAGCATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAG
AGGCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTG
CTCTTTGAGGACTAAAAGG
Found at i:29113 original size:55 final size:55
Alignment explanation
Indices: 28997--29229 Score: 303
Period size: 55 Copynumber: 4.3 Consensus size: 55
28987 AAAGGAGAGA
* * *
28997 GCATCCTACTCTTTAAGGACTGG-AAGTGCCACCAACCTT-TGTGGGCTTT-AAGAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAA-CTTGTGTGGGCTTTGAA-AG
29051 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* ** * * *
29106 GCGTCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
* * *
29161 GCGTCCTGCTCTTTGAGGACT-GAAAGTTGCCACCAACTTGTGTAGGCTTTGAAAG
1 GCATCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAG
29216 GCATCCTGCTCTTT
1 GCATCCTGCTCTTT
29230 TAGAACTAAA
Statistics
Matches: 160, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
54 27 0.17
55 131 0.82
56 2 0.01
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.29
Consensus pattern (55 bp):
GCATCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:29142 original size:203 final size:207
Alignment explanation
Indices: 28786--29186 Score: 587
Period size: 203 Copynumber: 1.9 Consensus size: 207
28776 GCAAAAAGAA
* *
28786 AGCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAAGCA
1 AGCATCCTACTCTTTAAGGACTGGAAGTTGCCACCAACTCGAGTGGGCTTT-AAAGGAG--AGCA
* *
28851 TCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTT
63 TCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
** * * *
28916 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTATCCTGCTCTTTGAGGACTAA
128 TGAGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCATCCTGCTCTTTGAGGACTAA
28981 AAGGTGAAAGGAGAG
193 AAGGTGAAAGGAGAG
**
28996 AGCATCCTACTCTTTAAGGACTGGAAG-TGCCACCAAC-CTTTGTGGGCTTT-AA-GAG-GCATC
1 AGCATCCTACTCTTTAAGGACTGGAAGTTGCCACCAACTC-GAGTGGGCTTTAAAGGAGAGCATC
* * *
29056 CTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
65 CTACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTG
* *
29121 AGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACTGAAA
130 AGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAA
29186 G
195 G
29187 TTGCCACCAA
Statistics
Matches: 174, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
203 124 0.71
206 3 0.02
207 2 0.01
208 1 0.01
209 18 0.10
210 26 0.15
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (207 bp):
AGCATCCTACTCTTTAAGGACTGGAAGTTGCCACCAACTCGAGTGGGCTTTAAAGGAGAGCATCC
TACTCTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGA
GGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAAG
GTGAAAGGAGAG
Found at i:29181 original size:28 final size:28
Alignment explanation
Indices: 29097--29181 Score: 64
Period size: 28 Copynumber: 3.1 Consensus size: 28
29087 CTTGTGTGGG
*
29097 CTTTGAAAGGCGTCCTGCTCTTTGAGGA
1 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
** * ** ** * **
29125 CTAAAAAATGCCACCAACT-TGTGTCGA
1 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
29152 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
1 CTTTAAAAGGCGTCCTGCTCTTTGAGGA
29180 CT
1 CT
29182 GAAAGTTGCC
Statistics
Matches: 35, Mismatches: 21, Indels: 2
0.60 0.36 0.03
Matches are distributed among these distances:
27 17 0.49
28 18 0.51
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (28 bp):
CTTTAAAAGGCGTCCTGCTCTTTGAGGA
Found at i:29250 original size:258 final size:264
Alignment explanation
Indices: 28729--29341 Score: 758
Period size: 258 Copynumber: 2.3 Consensus size: 264
28719 AGAAAAGGCG
* * *
28729 TCCTACTCTTTGAGAACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGCAAAAAGAAAGCATCCT
1 TCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT----AAAGAAGGCATCCT
* ** *
28794 ACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAAGCATCCTACTC
62 GCTCTTTGAGGACTGGAAAATGCCACCAACTCGAGTGGGCTTTGAAA-GAG--AGCATCCTACTC
* * * * * *
28859 TTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAGAGGTGTCCTGCTCTTTGAGGACT
124 TTTAAGGACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACT
* * *
28924 GGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTATCCTGCTCTTTGAGGACTAAAAGGTGAA
189 GGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGAACTAAAAGGTGAA
*
28989 AGGAGAGAGCA
254 AGGAAAGAGCA
*
29000 TCCTACTCTTTAAGGACTGGAA-GTGCCACCAACCTT-TGTGGGCTTT-AAG-AGGCATCCTGCT
1 TCCTACTCTTTGAGGACTGGAAGGTGCCACCAA-CTTGTGTGGGCTTTAAAGAAGGCATCCTGCT
* * * * *
29061 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTG-AA-AG-GCGTCCTGCTCTTTGAG
65 CTTTGAGGACTGGAAAATGCCACCAACTCGAGTGGGCTTTGAAAGAGAGCATCCTACTCTTTAAG
29123 GACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACT-GAAAG
130 GACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAA-
* * * *
29187 TTGCCACCAACTTGTGTAGGCTTTGAAAGGCATCCTGCTCTTTTAGAACTAAAGGGTGAAAGGAA
194 ATGCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGAACTAAAAGGTGAAAGGAA
*
29252 AGAGCG
259 AGAGCA
* * *
29258 TCCTGCTCTTTGAGGACTAGAAGGTGCCATCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCT
1 TCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-AAA-G--AAGGCATCCT
*
29323 GTTCTTTGAGGACT-GAAAA
62 GCTCTTTGAGGACTGGAAAA
29342 GTGAAGGGAG
Statistics
Matches: 299, Mismatches: 33, Indels: 27
0.83 0.09 0.08
Matches are distributed among these distances:
257 4 0.01
258 151 0.51
259 19 0.06
261 4 0.01
262 1 0.00
263 2 0.01
264 51 0.17
265 25 0.08
270 19 0.06
271 23 0.08
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (264 bp):
TCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAAGGCATCCTGCTC
TTTGAGGACTGGAAAATGCCACCAACTCGAGTGGGCTTTGAAAGAGAGCATCCTACTCTTTAAGG
ACTAAAAAATGCCACCAACTTGTGTCGACTTTAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAAT
GCCACCAACTTGTGTAGGCTTTAAAAGGCATCCTGCTCTTTGAGAACTAAAAGGTGAAAGGAAAG
AGCA
Found at i:29653 original size:20 final size:19
Alignment explanation
Indices: 29628--29683 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 19
29618 AAAAATGCCT
*
29628 AAATGTATCGATACATTGCA
1 AAATGTATCGATACAATG-A
29648 AAATGTATCGATACAATGA
1 AAATGTATCGATACAATGA
29667 ATAATGTATCGATACAA
1 A-AATGTATCGATACAA
29684 ATTGTTAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
19 2 0.06
20 32 0.94
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (19 bp):
AAATGTATCGATACAATGA
Found at i:30481 original size:45 final size:43
Alignment explanation
Indices: 30432--30531 Score: 112
Period size: 45 Copynumber: 2.3 Consensus size: 43
30422 TATGATAAAA
*
30432 GAAAAAGGAAAATAAATTGCGTCATACTCTTTGAGAACTAGAAGG
1 GAAAAAGGAAAATAAAGTGCGTCATACTCTTTGAGAAC-A-AAGG
* * * *
30477 GAAAAAAGG-AAATGAAGTGCGTCCTGCTCTTTGAGGACAAAGG
1 G-AAAAAGGAAAATAAAGTGCGTCATACTCTTTGAGAACAAAGG
*
30520 AAAAAAGGAAAA
1 GAAAAAGGAAAA
30532 GGCATCTTGC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
42 7 0.15
43 7 0.15
44 1 0.02
45 25 0.53
46 7 0.15
ACGTcount: A:0.46, C:0.11, G:0.25, T:0.18
Consensus pattern (43 bp):
GAAAAAGGAAAATAAAGTGCGTCATACTCTTTGAGAACAAAGG
Found at i:30635 original size:61 final size:62
Alignment explanation
Indices: 30565--30859 Score: 251
Period size: 61 Copynumber: 4.9 Consensus size: 62
30555 GGAGAAAAGG
* *
30565 AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCCTTGAAAATA-AA
1 AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* * * * ** *
30626 AGGCGTCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTGGGTTTTGCAAAGAGAA
1 AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* * * * * *
30688 A-GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAA
1 AGGCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* * * * *
30749 A-GCATCTTGCTTTTTAAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTG---AGAG--
1 AGGCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
* *
30805 -GTG--TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGG-CTTTAAAAG
1 AG-GCATCCTACTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAG
30860 GCATCCTGCT
Statistics
Matches: 192, Mismatches: 33, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
54 2 0.01
55 39 0.20
57 3 0.02
58 3 0.02
60 2 0.01
61 137 0.71
62 4 0.02
63 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (62 bp):
AGGCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCCTTGAAAAGAGAA
Found at i:30784 original size:122 final size:122
Alignment explanation
Indices: 30567--30800 Score: 292
Period size: 122 Copynumber: 1.9 Consensus size: 122
30557 AGAAAAGGAG
* * *
30567 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCCTTGAAAATAAAAGGCGT
1 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTGGGCCTTGAAAAGAAAAGGCAT
* * ** *
30632 CCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTGGGTTTTGCAAAGAGAAA
66 CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAGAGAAA
* * * *
30689 GCATCCTACTCTTTGAGGACTG-GAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAA-GC
1 GCATCCTACTCTTTGAGGACTGAAAAG-TGCCACCAACTCGAGTGGGCCTTGAAAAGA-AAAGGC
* * * *
30752 ATCTTGCTTTTTAAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTG
64 ATCCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTG
30801 AGAGGTGTCC
Statistics
Matches: 94, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
121 3 0.03
122 88 0.94
123 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (122 bp):
GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGAGTGGGCCTTGAAAAGAAAAGGCAT
CCTACTCTTTAAGGACTAGAAAATGCCACCAACTTGCGTGGGCTTTGCAAAGAGAAA
Found at i:32199 original size:61 final size:60
Alignment explanation
Indices: 32064--32353 Score: 256
Period size: 61 Copynumber: 4.9 Consensus size: 60
32054 AAAGGAAAAG
* * * *
32064 GCATCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC--ACGTGTGGCCTTGAAAGA-AAA
1 GCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTG-GGCTTTGAAAGAGAAA
* * *
32122 GGCGTCCTACTCTTTGAGGGCTGGAAGGTGCCACCAACTTGCGTGGGTTTTGCAAAGAGAAA
1 -GCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTGGGCTTTG-AAAGAGAAA
* * * *
32184 GCATCCTACTCTTTGAGGACTGGAAGTTGCCACCAACTCGAGTGGTCTTTGAAAGGAGAAA
1 GCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGAAA-GAGAAA
* * * * * * *
32245 GCATCTTGCTTTTTAAGGACTAGAA-ATGCCACCAACTTGTGTGGGCTTTG--AGAG---
1 GCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAGAAA
** * ** * *
32299 GTGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAG
1 GCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGAAAG
32354 GCATCCTGCT
Statistics
Matches: 193, Mismatches: 30, Indels: 18
0.80 0.12 0.07
Matches are distributed among these distances:
54 19 0.10
55 24 0.12
57 5 0.03
58 1 0.01
59 33 0.17
60 29 0.15
61 79 0.41
62 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (60 bp):
GCATCCTACTCTTTGAGGACTGGAAGGTGCCACCAACTTGCGTGGGCTTTGAAAGAGAAA
Done.