Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1593
Parameters: 2 7 7 80 10 50 1000
Length:  27114

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--722
28
25.4
28
83
9
806
27
31
17
22
1.97
1302--1376
20
3.8
20
78
0
87
34
13
12
40
1.81
1302--1379
40
2.0
39
87
2
111
34
12
12
39
1.82
2288--2342
22
2.5
22
96
0
101
20
10
7
61
1.52
13339--13450
33
3.4
32
79
18
115
83
12
3
0
0.76
13354--13448
25
3.8
25
83
12
106
84
13
2
0
0.72
13342--13448
35
3.0
34
84
12
126
84
12
3
0
0.76
13339--13450
14
7.8
14
78
16
99
83
12
3
0
0.76
13340--13437
1
98.0
1
71
0
70
85
10
4
0
0.71
14830--14995
28
5.7
29
83
7
212
31
33
17
17
1.93
14830--14995
87
1.9
86
88
3
253
31
33
17
17
1.93
14816--15003
58
3.2
57
91
3
286
29
32
17
21
1.96
14976--15065
32
2.8
32
91
1
135
20
33
14
32
1.92
15104--15231
35
3.7
35
86
6
161
18
28
11
41
1.86
15106--15249
35
4.1
34
83
7
155
18
27
12
41
1.86
15306--15684
49
8.0
49
78
9
374
25
24
16
32
1.96
15411--15577
87
1.9
85
89
4
255
27
26
17
28
1.98
15374--15629
139
1.9
134
84
7
345
25
25
17
30
1.98
15495--15769
101
2.8
101
82
2
306
24
25
16
33
1.96
16520--16544
13
1.9
13
100
0
50
36
16
16
32
1.90
16616--16643
13
2.2
13
100
0
56
28
14
17
39
1.89
20727--20785
28
2.2
28
81
6
68
44
0
8
47
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20888--21157
128
2.1
128
78
14
295
43
2
2
51
1.29
22680--22740
29
2.1
29
84
6
79
34
14
19
31
1.92
23858--23888
14
2.2
14
100
0
62
29
12
6
51
1.65
27004--27060
20
2.8
20
81
5
62
40
12
17
29
1.86

Tables:   1

The End!