genome.fa.s1596.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1596
Parameters: 2 7 7 80 10 50 1000
Length:  47206

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479--1533	19	2.8	20	72	2	58	34	12	12	40	1.82
1564--1614	20	2.5	20	87	6	68	35	15	19	29	1.93
3631--3656	13	2.0	13	100	0	52	30	15	15	38	1.88
6012--6058	21	2.3	21	76	23	55	42	4	19	34	1.70
6179--6204	13	2.0	13	100	0	52	38	15	15	30	1.88
8285--8315	15	2.1	15	93	0	53	12	22	16	48	1.80
12912--13032	52	2.3	52	97	0	224	28	18	18	34	1.94
12912--13052	52	2.7	51	90	4	212	30	17	18	33	1.94
13041--13065	13	1.9	13	100	0	50	36	16	16	32	1.90
13131--13155	13	1.9	13	100	0	50	32	16	16	36	1.90
13109--13175	33	2.0	33	88	0	98	40	13	11	34	1.81
14102--14233	43	2.8	47	79	14	155	31	17	23	27	1.97
14251--14451	43	4.0	52	75	13	186	33	16	24	25	1.96
13968--14666	218	3.2	218	97	0	1310	35	15	24	24	1.94
14469--14860	48	7.8	52	83	8	374	31	17	26	24	1.97
14533--14860	48	6.7	49	86	7	438	29	18	27	24	1.98
14533--14860	97	3.4	97	88	5	443	29	18	27	24	1.98
14865--14957	33	2.8	33	93	6	163	15	19	36	29	1.92
14959--15891	33	27.3	35	82	11	905	33	12	33	20	1.90
15205--15272	32	2.2	31	92	5	118	20	17	35	26	1.95
15446--15505	27	2.2	27	87	0	84	28	15	38	18	1.91
15473--15891	71	6.1	68	85	7	483	35	11	31	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15473--15891	105	4.0	103	85	8	523	35	11	31	20	1.89
15798--15885	32	2.9	29	80	11	79	32	15	28	22	1.95
16801--16833	1	33.0	1	100	0	66	0	0	0	100	0.00
24100--24220	52	2.3	52	97	0	224	28	18	18	34	1.94
24100--24240	52	2.7	51	90	4	212	30	17	18	33	1.94
24229--24253	13	1.9	13	100	0	50	36	16	16	32	1.90
24319--24343	13	1.9	13	100	0	50	32	16	16	36	1.90
24297--24363	33	2.0	33	88	0	98	40	13	11	34	1.81
24953--24997	21	2.1	21	84	8	56	22	20	4	53	1.63
27219--27244	13	2.0	13	100	0	52	30	15	15	38	1.88
29599--29645	21	2.3	21	76	23	55	42	4	19	34	1.70
29766--29791	13	2.0	13	100	0	52	38	15	15	30	1.88
31871--31901	15	2.1	15	93	0	53	12	22	16	48	1.80
33704--33748	21	2.1	21	84	8	56	22	20	4	53	1.63
35967--35992	13	2.0	13	100	0	52	30	15	15	38	1.88
42573--42618	21	2.2	21	84	7	58	23	19	4	52	1.64

Tables:   1

The End!