genome.fa.s1599.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1599
Parameters: 2 7 7 80 10 50 1000
Length:  108545

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1708	61	28.2	61	85	5	2123	25	26	18	29	1.98
1699--2035	45	7.6	45	77	9	305	20	30	12	36	1.89
1699--2029	134	2.5	134	86	2	457	20	30	12	36	1.90
2073--2379	45	6.9	44	74	11	234	18	26	12	42	1.86
2073--2346	87	3.1	86	77	10	246	19	26	12	41	1.87
1834--2263	238	1.8	239	86	2	632	20	29	12	36	1.90
5486--5598	51	2.2	51	87	3	156	31	24	9	33	1.88
5582--5654	28	2.6	28	89	4	112	24	27	19	28	1.98
5610--5865	79	3.3	79	76	3	221	25	25	15	33	1.95
7698--7728	16	1.9	16	93	0	53	6	38	0	54	1.26
9564--9624	13	4.7	13	87	0	95	36	16	16	31	1.91
14933--14967	3	11.7	3	93	0	61	28	37	0	34	1.58
16546--16600	20	2.8	20	85	0	65	30	23	10	34	1.89
16586--16615	13	2.3	13	94	0	51	33	16	16	33	1.92
16679--16705	13	2.1	13	100	0	54	40	14	14	29	1.86
20605--20638	10	3.3	10	88	8	50	47	8	0	44	1.34
22509--22579	20	3.8	20	78	14	87	38	12	18	30	1.88
22532--22562	16	1.9	16	93	0	53	29	16	16	38	1.90
22471--22683	87	2.4	87	85	6	293	42	12	17	27	1.85
22598--22672	20	3.8	20	70	0	69	40	12	14	33	1.83
23417--23499	32	2.7	31	87	7	116	24	18	30	27	1.98
23445--24881	28	51.6	28	78	9	858	26	16	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24358--25040	27	25.2	27	85	3	845	28	13	30	26	1.94
24358--25040	164	4.2	163	84	3	867	28	13	30	26	1.94
33514--33688	71	2.5	71	85	3	228	41	12	16	29	1.85
33592--33759	51	3.5	49	74	17	183	42	12	16	28	1.84
33632--33799	20	7.8	20	73	18	115	42	13	14	30	1.83
33634--33799	40	3.9	40	74	16	152	42	13	13	30	1.83
33560--33810	91	2.8	91	93	1	405	42	13	15	28	1.84
34590--34744	34	4.9	34	79	18	208	40	38	0	20	1.53
34619--34674	22	2.5	22	97	0	103	39	41	0	19	1.52
34590--34701	56	2.0	56	98	0	215	39	40	0	20	1.53
34591--34718	56	2.2	55	93	4	175	41	39	0	19	1.52
39417--39657	34	7.8	34	76	20	269	40	38	0	20	1.53
39446--39591	22	6.5	22	76	12	154	39	39	0	20	1.53
39417--39652	56	4.0	56	74	21	239	39	39	0	20	1.53
39417--39652	90	2.6	90	98	0	463	39	39	0	20	1.53
39911--40805	28	31.6	28	80	6	740	25	18	29	27	1.98
41095--41127	15	2.2	15	100	0	66	30	6	12	51	1.63
43078--43137	20	3.2	18	81	11	59	78	0	6	15	0.95
43102--43138	16	2.4	16	83	16	51	83	0	2	13	0.74
43083--43138	26	2.2	26	81	15	64	80	0	5	14	0.88
44407--44457	20	2.6	19	81	6	66	43	11	7	37	1.71
48358--48407	10	5.0	10	77	18	50	82	2	14	2	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48353--48406	19	2.9	19	86	2	65	81	1	14	1	0.86
48343--48407	29	2.2	30	86	2	87	80	3	13	3	0.96
48353--48406	18	2.9	18	84	13	58	81	1	14	1	0.86
49787--49904	58	2.1	57	85	1	155	35	16	12	34	1.87
51104--51385	155	1.8	155	80	4	336	39	17	13	29	1.88
51373--51694	155	2.1	154	82	4	382	38	18	13	28	1.89
58494--58519	13	2.0	13	100	0	52	38	15	15	30	1.88
58476--58539	32	2.0	33	90	3	103	39	18	14	28	1.90
60227--60298	20	3.6	20	75	20	71	37	13	16	31	1.88
60880--60925	20	2.2	20	84	3	56	45	21	2	30	1.64
65972--66004	11	3.0	11	95	0	57	30	9	18	42	1.81
69892--69933	20	2.0	21	86	4	59	38	0	2	59	1.10
70590--70652	30	2.1	31	82	14	78	38	3	1	57	1.24
70683--70739	20	2.8	21	82	15	59	54	1	0	43	1.10
70700--70739	22	1.9	20	90	10	62	57	2	0	40	1.12
71266--71363	20	4.8	19	73	23	76	2	23	1	73	1.00
71264--71336	26	2.7	26	82	4	74	2	19	1	76	0.98
71265--71337	7	10.9	7	76	5	62	2	19	1	76	0.98
71760--71784	13	1.9	13	100	0	50	32	16	16	36	1.90
74258--75934	841	2.0	841	91	1	2725	36	12	17	33	1.87
81190--81240	19	2.6	19	84	3	66	35	13	13	37	1.85
88460--88628	81	2.1	81	81	5	189	33	19	17	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89300--89384	27	3.1	27	89	0	134	16	25	35	22	1.95
93084--93135	21	2.5	21	96	0	95	17	9	9	63	1.50
93084--93142	21	2.9	21	89	2	66	20	10	10	59	1.58
105854--105902	11	4.5	11	87	5	73	89	8	2	0	0.55
105855--105894	10	3.9	10	93	6	71	90	10	0	0	0.47
105852--105902	1	51.0	1	80	0	57	90	7	1	0	0.53

Tables:   1

The End!