Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold16
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5287347
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 8769 characters in sequence are not A, C, G, or T
File 1 of 35
Found at i:7914 original size:32 final size:33
Alignment explanation
Indices: 7852--7920 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
7842 TTCAACGATT
*
7852 TGTATCGATACATAAAGTGTTGTATTGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*
7885 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
7917 TGTA
1 TGTA
7921 AGCTACTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 21 0.62
33 13 0.38
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:8085 original size:52 final size:52
Alignment explanation
Indices: 7936--8086 Score: 221
Period size: 52 Copynumber: 2.9 Consensus size: 52
7926 CTGCCAAAAA
* ** * * *
7936 ATGTATCGATACATTACTCTAATGTATCGATACATGCAGGTAAATCTGCCCAT
1 ATGTATCGATACACTA-TGAAATGTATCGATACATGCAGGCAAATTTGCCCAG
* *
7989 ATGTATCGATACGCTATGAAATGTATCGATACATACAGGCAAATTTGCCCAG
1 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTTGCCCAG
8041 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTT
1 ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTT
8087 TCATATTTTG
Statistics
Matches: 88, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
52 74 0.84
53 14 0.16
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (52 bp):
ATGTATCGATACACTATGAAATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:16324 original size:31 final size:30
Alignment explanation
Indices: 16269--16388 Score: 107
Period size: 30 Copynumber: 3.9 Consensus size: 30
16259 CTTCAAATAC
* * *
16269 CTTCTTAAAGTCCATGACTTAGTGGCAATCT
1 CTTCTCAAAGTCCACGACTCAGTGGCAAT-T
*
16300 CTTCTCAAAGCCCACGACTCAGTGGC-ATT
1 CTTCTCAAAGTCCACGACTCAGTGGCAATT
* *
16329 TTGTCTCAAAGTCCACGACTCAGTGGCATCCTT
1 CT-TCTCAAAGTCCACGACTCAGTGGCA--ATT
* * * *
16362 TTTTTCAAAGTCCACAACTCTGTGGCA
1 CTTCTCAAAGTCCACGACTCAGTGGCA
16389 CCCTTTTAAG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
29 2 0.03
30 25 0.33
31 22 0.29
32 22 0.29
33 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (30 bp):
CTTCTCAAAGTCCACGACTCAGTGGCAATT
Found at i:16375 original size:32 final size:32
Alignment explanation
Indices: 16270--16395 Score: 125
Period size: 32 Copynumber: 4.0 Consensus size: 32
16260 TTCAAATACC
* * * *
16270 TTCTTAAAGTCCATGACTTAGTGGCAAT-C-TC
1 TTCTCAAAGTCCACGACTCAGTGGC-ATCCTTT
*
16301 TTCTCAAAGCCCACGACTCAGTGGCAT--TTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCCTTT
*
16331 GTCTCAAAGTCCACGACTCAGTGGCATCCTTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCCTTT
* * * *
16363 TTTTCAAAGTCCACAACTCTGTGGCACCCTTT
1 TTCTCAAAGTCCACGACTCAGTGGCATCCTTT
16395 T
1 T
16396 AAGTCCACAA
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
30 28 0.35
31 21 0.26
32 31 0.39
ACGTcount: A:0.23, C:0.29, G:0.16, T:0.33
Consensus pattern (32 bp):
TTCTCAAAGTCCACGACTCAGTGGCATCCTTT
Found at i:16403 original size:27 final size:27
Alignment explanation
Indices: 16369--16570 Score: 172
Period size: 27 Copynumber: 7.0 Consensus size: 27
16359 CTTTTTTTCA
*
16369 AAGTCCACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
16396 AAGTCCACAACTCCGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
* *
16423 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT
1 AAGTCCACAACTCCGTGGCA--C-----CCTTTT
*
16457 AAGTCCACAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
* * *
16484 AAGCCCACAACTCCATGGCACTCTTTTTCCTTCT
1 AAGTCCACAACTCCGTGGCA--C-----CCTTTT
*
16518 AAGTCCACAACT-CGTGGCTCCCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
* * *
16544 AAGCCCATAACTCCGTGGCACTCTTTT
1 AAGTCCACAACTCCGTGGCACCCTTTT
16571 TCCTTCTAAG
Statistics
Matches: 142, Mismatches: 18, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
26 15 0.11
27 79 0.56
29 2 0.01
31 1 0.01
32 1 0.01
33 5 0.04
34 39 0.27
ACGTcount: A:0.21, C:0.36, G:0.13, T:0.30
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCACCCTTTT
Found at i:16475 original size:34 final size:34
Alignment explanation
Indices: 16417--16620 Score: 188
Period size: 34 Copynumber: 6.4 Consensus size: 34
16407 TCCGTGGCAC
*
16417 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
* *
16451 CCTTCTAAGTCCACAACTCTGTGGCA--C-----
1 CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
* *
16478 CCTTTTAAGCCCACAACTCCATGGCACTCTTTTT
1 CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
*
16512 CCTTCTAAGTCCACAACT-CGTGG--CTC-----
1 CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
* *
16538 CCTTTTAAGCCCATAACTCCGTGGCACTCTTTTT
1 CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
*
16572 CCTTCTAAGTCCACAACTCCGTGGCAC-CTTTTT
1 CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
* *
16605 CTTTTCAAAGCCCACA
1 C-CTTCTAAGCCCACA
16621 CAAGTAGGTG
Statistics
Matches: 135, Mismatches: 19, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
26 15 0.11
27 27 0.20
29 4 0.03
31 3 0.02
32 1 0.01
33 11 0.08
34 74 0.55
ACGTcount: A:0.20, C:0.36, G:0.12, T:0.32
Consensus pattern (34 bp):
CCTTCTAAGCCCACAACTCCGTGGCACTCTTTTT
Found at i:16541 original size:26 final size:27
Alignment explanation
Indices: 16512--16562 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
16502 CACTCTTTTT
*
16512 CCTTCTAAGTCCACAACT-CGTGGCTC
1 CCTTCTAAGCCCACAACTCCGTGGCTC
* *
16538 CCTTTTAAGCCCATAACTCCGTGGC
1 CCTTCTAAGCCCACAACTCCGTGGC
16563 ACTCTTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.20, C:0.37, G:0.16, T:0.27
Consensus pattern (27 bp):
CCTTCTAAGCCCACAACTCCGTGGCTC
Found at i:16564 original size:60 final size:61
Alignment explanation
Indices: 16390--16604 Score: 369
Period size: 61 Copynumber: 3.5 Consensus size: 61
16380 TCTGTGGCAC
*
16390 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTCTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
* *
16451 CCTTCTAAGTCCACAACTCTGTGGCACCCTTTTAAGCCCACAACTCCATGGCACTCTTTTT
1 CCTTCTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
* *
16512 CCTTCTAAGTCCACAACT-CGTGGCTCCCTTTTAAGCCCATAACTCCGTGGCACTCTTTTT
1 CCTTCTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
*
16572 CCTTCTAAGTCCACAACTCCGTGGCACCTTTTT
1 CCTTCTAAGTCCACAACTCCGTGGCACCCTTTT
16605 CTTTTCAAAG
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
60 56 0.39
61 88 0.61
ACGTcount: A:0.20, C:0.36, G:0.13, T:0.32
Consensus pattern (61 bp):
CCTTCTAAGTCCACAACTCCGTGGCACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
Found at i:16642 original size:32 final size:33
Alignment explanation
Indices: 16606--16737 Score: 205
Period size: 33 Copynumber: 4.1 Consensus size: 33
16596 CACCTTTTTC
* *
16606 TTTTC-AAAGCCCACACAAGTAGGTGGTAACCT
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCT
*
16638 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCC
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCT
16671 TTTTC-AAAGCCCACACAAGTCGGTGGCAACCT
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCT
* *
16703 TTTTCTAAAGCCCACACAAGTTGGTGGTAACCT
1 TTTTCTAAAGCCCACACAAGTCGGTGGCAACCT
16736 TT
1 TT
16738 CTAAGCCCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
32 36 0.39
33 56 0.61
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (33 bp):
TTTTCTAAAGCCCACACAAGTCGGTGGCAACCT
Found at i:16681 original size:65 final size:64
Alignment explanation
Indices: 16605--16746 Score: 223
Period size: 65 Copynumber: 2.2 Consensus size: 64
16595 GCACCTTTTT
*
16605 CTTTTCAAAGCCCACACAAGTAGGTGGTAACCTTTTTCTAAAGCCCACACAAGTCGGTGGCAACC
1 CTTTTCAAAGCCCACACAAGTAGGTGGCAACCTTTTTCTAAAGCCCACACAAGTCGGTGGCAA-C
* * *
16670 CTTTTCAAAGCCCACACAAGTCGGTGGCAACCTTTTTCTAAAGCCCACACAAGTTGGTGGTAAC
1 CTTTTCAAAGCCCACACAAGTAGGTGGCAACCTTTTTCTAAAGCCCACACAAGTCGGTGGCAAC
*
16734 C-TTTCTAAGCCCA
1 CTTTTCAAAGCCCA
16747 ATATCATTGG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 11 0.15
64 2 0.03
65 59 0.82
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.25
Consensus pattern (64 bp):
CTTTTCAAAGCCCACACAAGTAGGTGGCAACCTTTTTCTAAAGCCCACACAAGTCGGTGGCAAC
Found at i:16848 original size:43 final size:43
Alignment explanation
Indices: 16783--17931 Score: 939
Period size: 43 Copynumber: 25.0 Consensus size: 43
16773 TGGCACCATT
* *
16783 ATCTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
16826 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * *
16869 ACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG---C
* * * *
16915 TTTATCTTTTAGACCAATGTCGCTGGCCTTGAATCAGCACATTAGA
1 ---ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * * *
16961 ACCTTCAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG---C
* *
17007 TTTATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAACACATTGGC
1 ---ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* *
17053 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCTGCACATTGGA
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * * *
17096 ACCTTTAAGTCCAATATAGATGGCCTTGAATCAGCATATTGGCACC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG---C
* *
17142 TTTATCTTTAAGACCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1 ---ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
*
17188 ATCTTTAAGTCCAATGTCGCTCGCCTTGAATCAGCACATTGGC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * * * *
17231 ACCTTTAAGTCCAATATAGATGGCCTTGATTCAGCATATTGGCACC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG---C
* * *
17277 TTTATCTTTAAGACCAACGTCGCTGGCCTTGAATCAGCGCATTGGC
1 ---ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* ** * *
17323 ACCTTTAAGTCCAATACCGCTAGCCTTGAATCAGCATATTGGCACC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG---C
* * *
17369 TTTATCTTTAAGACCAATGTCACTGGCCTTGAATCGGCACATTGGC
1 ---ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * *
17415 ACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG------C
*
17464 ATCTTTAAGTCCAATGTGGCTGGCCTTGAATCAGCACATTGGC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * *
17507 ACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG------C
*
17556 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * *
17599 ACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG------C
* *
17648 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACCTTGGC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* ** * * * *
17691 ACCTCCAAGTCCAATATCGCTAGCCTTGAATCAACATATTGGCACCCTC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGG------C
* * *
17740 ATCTTTTAAGCCCAATGTCGCTGGCCTTAAATCAGCACATTGAC
1 ATC-TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
* * * *
17784 ACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATAATGGCACCTTTGTC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGC---A---CA---TTGGC
* *
17836 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACA-T--TG-----G-C
* *
17888 ATTTTTAAGTCCAATGTCGCTGGCCTTTAATCAGCACATTGGC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
17931 A
1 A
17932 CCTTCATCTT
Statistics
Matches: 895, Mismatches: 139, Indels: 144
0.76 0.12 0.12
Matches are distributed among these distances:
43 475 0.53
44 6 0.01
46 11 0.01
49 300 0.34
50 30 0.03
51 1 0.00
52 72 0.08
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (43 bp):
ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGC
Found at i:16922 original size:92 final size:92
Alignment explanation
Indices: 16785--17877 Score: 1439
Period size: 92 Copynumber: 12.0 Consensus size: 92
16775 GCACCATTAT
** *
16785 CTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGG---C---ATCTTTAAGTCCAATGTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
16844 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
16871 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTTAGACCAATGTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
* *
16936 GCTGGCCTTGAATCAGCACATTAGAAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * *
16963 CTTCAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
* *
17028 GCTGGCCTTGAATCAACACATTGGCAT
66 GCTGGCCTTGAATCAGCACATTGGCAC
* * * * * * *
17055 CTTTAAGTCCAATGTCGCTGGCCTTGAATCTGCACATTGG-A-----ACCTTTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
* *
17114 GATGGCCTTGAATCAGCATATTGGCACC
66 GCTGGCCTTGAATCAGCACATTGGCA-C
* * *
17142 TTTATCTTTAAGACCAATGTAGCTGGCCTTGAATCAGCACATTGG---C---ATCTTTAAGTCCA
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCA
*
17201 ATGTCGCTCGCCTTGAATCAGCACATTGGCAC
61 ATGTCGCTGGCCTTGAATCAGCACATTGGCAC
* * * *
17233 CTTTAAGTCCAATATAGATGGCCTTGATTCAGCATATTGGCACCTTTATCTTTAAGACCAACGTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
*
17298 GCTGGCCTTGAATCAGCGCATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
** * *
17325 CTTTAAGTCCAATACCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
* *
17390 ACTGGCCTTGAATCGGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
17417 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTG
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
17482 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
17509 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
17574 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
* *
17601 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
*
17666 GCTGGCCTTGAATCAGCACCTTGGCAC
66 GCTGGCCTTGAATCAGCACATTGGCAC
** * * * * * *
17693 CTCCAAGTCCAATATCGCTAGCCTTGAATCAACATATTGGCACCCTCATCTTTTAAGCCCAATGT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATC-TTTAAGTCCAATGT
* *
17758 CGCTGGCCTTAAATCAGCACATTGACAC
65 CGCTGGCCTTGAATCAGCACATTGGCAC
* * *
17786 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATAATGGCACCTTTGTCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATCTTTAAGTCCAAT
* *
17851 ATCGCTGGCCTTGAATCAGCATATTGG
63 GTCGCTGGCCTTGAATCAGCACATTGG
17878 TGCCTTTGTC
Statistics
Matches: 897, Mismatches: 87, Indels: 37
0.88 0.09 0.04
Matches are distributed among these distances:
86 111 0.12
89 2 0.00
91 2 0.00
92 667 0.74
93 77 0.09
94 1 0.00
95 34 0.04
96 3 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTC
GCTGGCCTTGAATCAGCACATTGGCAC
Found at i:16987 original size:135 final size:137
Alignment explanation
Indices: 16754--17935 Score: 1166
Period size: 135 Copynumber: 8.6 Consensus size: 137
16744 CCAATATCAT
* * *
16754 TGGCCTTGAATCAGCATATTGGCACCATTATCTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
* * *
16819 CATTGGCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C-CTTTAAGTCCA
66 CATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTTTAAGTCCA
16882 ATATAGC
131 ATATAGC
* *
16889 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTTAGACCAATGTCGCTGGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
* * * * * *
16954 CATTAGAACCTTCAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
66 CATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC----TCTTTAAG
*
17019 TCCAATGTAGC
127 TCCAATATAGC
* * *
17030 TGGCCTTGAATCAACACATTGG---C---ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCTGCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
* * *
17089 CATTGGAACCTTTAAGTCCAATATAGATGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAG
66 CATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC----TCTTTAAG
* *
17154 ACCAATGTAGC
127 TCCAATATAGC
* *
17165 TGGCCTTGAATCAGCACATTGG---C---ATCTTTAAGTCCAATGTCGCTCGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
* * *
17224 CATTGGCACCTTTAAGTCCAATATAGATGGCCTTGATTCAGCATATTGGCACCTTTATCTTTAAG
66 CATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC----TCTTTAAG
* ** *
17289 ACCAACGTCGC
127 TCCAATATAGC
** ** *
17300 TGGCCTTGAATCAGCGCATTGGCA-C-----CTTTAAGTCCAATACCGCTAGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
* * * *
17359 TATTGGCACCTTTATCTTTAAGACCAATGTCA-CTGGCCTTGAATCGGCACATTGGCA-C-CTTT
66 CATTGGCA-C-----CTTTAAGTCCAATAT-AGCTGGCCTTGAATCAGCACATTGGCACCTCTTT
17421 AAGTCCAATATAGC
124 AAGTCCAATATAGC
* *
17435 TGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTGGCTGGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
*
17500 CATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAG
66 CATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C--C-TCTTTAAG
*
17565 TCCAATGTAGC
127 TCCAATATAGC
* * *
17576 TGGCCTTGAATCAGCACATTGGCA-C-----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCA
1 TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
* * * *
17635 TATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACCTTGGCACCTC--CA
66 CATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTTTA
*
17698 AGTCCAATATCGC
125 AGTCCAATATAGC
* * * * * *
17711 TAGCCTTGAATCAACATATTGGCACCCTCATCTTTTAAGCCCAATGTCGCTGGCCTTAAATCAGC
1 TGGCCTTGAATCAGCATATTGGCACCTTTATC-TTTAAGTCCAATGTCGCTGGCCTTGAATCAGC
* * * * *
17776 ACATTGACACCTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATAATGGCACCTTTGTCATCTT
65 ACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C-----C-TCTT
*
17841 TAAGTCCAATATCGC
123 TAAGTCCAATATAGC
** * *
17856 TGGCCTTGAATCAGCATATTGGTGCCTTTGTCATTTTTAAGTCCAATGTCGCTGGCCTTTAATCA
1 TGGCCTTGAATCAGCATATTGGCACC-TT-T-ATCTTTAAGTCCAATGTCGCTGGCCTTGAATCA
17921 GCACATTGGCACCTT
63 GCACATTGGCACCTT
17936 CATCTTTAAC
Statistics
Matches: 900, Mismatches: 94, Indels: 94
0.83 0.09 0.09
Matches are distributed among these distances:
134 1 0.00
135 538 0.60
136 40 0.04
137 4 0.00
138 3 0.00
139 2 0.00
140 4 0.00
141 188 0.21
142 37 0.04
143 2 0.00
145 36 0.04
146 1 0.00
147 42 0.05
148 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (137 bp):
TGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
CATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCTTTAAGTCCA
ATATAGC
Found at i:17864 original size:52 final size:52
Alignment explanation
Indices: 17786--18140 Score: 240
Period size: 52 Copynumber: 6.8 Consensus size: 52
17776 ACATTGACAC
* *
17786 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATAATGGCACCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
**
17838 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* * * * * * *
17890 TTTTAAGTCCAATGTCGCTGGCCTTTAATCAGCACATTGGCACCTTCATCTTTAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-GTCAT
* * * ** *
17945 CATTCCTAAGCCCGATGTCGCTGGCCTTGCCTCAGCACATTGGCA--TTT-T--T
1 C-TT--TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
* ** * * * * *
17995 CTTCAAGTTTAAATGTCGTTGGCCATGAATCAGCACATTGTCA--TTTGTTGCAT
1 CTTTAAG-TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG-T-CAT
* * * * *
18048 CTTCAAGTCCAATATTGCTGGCCTTGAATCAGCATATTAGCA-TTTTCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-GTCAT
** * * *
18100 CTTTAAAACCCAATATCGTTGGCCGTGAATCAACATATTGG
1 CTTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
18141 TCCTTTTATC
Statistics
Matches: 240, Mismatches: 48, Indels: 29
0.76 0.15 0.09
Matches are distributed among these distances:
47 3 0.01
48 29 0.12
49 2 0.01
50 2 0.01
52 121 0.50
53 41 0.17
54 2 0.01
55 2 0.01
56 4 0.02
58 34 0.14
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCAT
Found at i:18827 original size:13 final size:13
Alignment explanation
Indices: 18809--18833 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18799 CATAAAGTGT
18809 TGTATCGATACAA
1 TGTATCGATACAA
18822 TGTATCGATACA
1 TGTATCGATACA
18834 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:18849 original size:32 final size:33
Alignment explanation
Indices: 18791--18857 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 33
18781 CAACGATTTA
18791 TATCGATACATAAAGTGTTGTATCGATACAATG
1 TATCGATACATAAAGTGTTGTATCGATACAATG
* *
18824 TATCGATACAT-AAGTTTTGTATCGATGCAATG
1 TATCGATACATAAAGTGTTGTATCGATACAATG
18856 TA
1 TA
18858 AGCTACTGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 21 0.66
33 11 0.34
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (33 bp):
TATCGATACATAAAGTGTTGTATCGATACAATG
Found at i:18913 original size:13 final size:13
Alignment explanation
Indices: 18895--18919 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18885 ATTACTCTAA
18895 TGTATCGATACAT
1 TGTATCGATACAT
18908 TGTATCGATACA
1 TGTATCGATACA
18920 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:19055 original size:52 final size:52
Alignment explanation
Indices: 18928--19056 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
18918 CACTGATCTT
*
18928 TGTATCGATACATGCAGGCAAATCTACCCAGATGCATCAATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGCATCAATACACTATGAAA
* * * *
18980 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTACCCAGATGCATCAATACACTATGAAA
19032 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
19057 TCATATTTCA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.26
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTACCCAGATGCATCAATACACTATGAAA
Found at i:22166 original size:13 final size:13
Alignment explanation
Indices: 22148--22172 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22138 ACGACATTCA
22148 TGTATCGATACAT
1 TGTATCGATACAT
22161 TGTATCGATACA
1 TGTATCGATACA
22173 ATGTGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:22284 original size:33 final size:32
Alignment explanation
Indices: 22225--22287 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 32
22215 CCAGTTTCAT
* * *
22225 GTATCGATACAATGATCATGTATCGATACAAG
1 GTATCAATACAAAGATAATGTATCGATACAAG
22257 GTATCAATACAAAGCATAATGTATCGATACA
1 GTATCAATACAAAG-ATAATGTATCGATACA
22288 TCTAGATGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 12 0.44
33 15 0.56
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (32 bp):
GTATCAATACAAAGATAATGTATCGATACAAG
Found at i:23567 original size:148 final size:149
Alignment explanation
Indices: 23129--23621 Score: 396
Period size: 149 Copynumber: 3.3 Consensus size: 149
23119 ACTTACTCAG
* * * * * ** * *
23129 ATATCACTAAGACCTACCATCGACGTAGAAGTGCCCGAACATTCT-AGTGGACTTAAAAAGACAA
1 ATATCCCTAAGGCTTACCATCGACTTAGAAGTGCCTGATGATCCTAAG-GGACTTGAAAA-ACAA
* * * * * * * * *
23193 AAACAAACCTACTCCGAATTCT-TACCTTCGACATAGAAGC-AGA-CTCGGTAATTTTATAGAAC
64 AAATAAGCCTACCCCTAATT-TATACCTTCGACATAGAAACGA-ACCT-AGTAATTTCATAGGAT
* * *
23255 TAGGTTTCGGGAGAAA-TGCTAAA
126 TAGCTTTCAGGAAAAAGTGCTAAA
** * * * * * *
23278 AGGTCCCTAAGGCCTACCATCGACTTAGAAGTGCTTGGTGATCCTGAGGGACTTGAAAGATAAAA
1 ATATCCCTAAGGCTTACCATCGACTTAGAAGTGCCTGATGATCCTAAGGGACTTGAAAAACAAAA
* * *
23343 ATAAGCCTACCCCTAATTTATACTTTCGACATAGAAACGAACCTAGTAATTTCATAGGGTTAGGT
66 ATAAGCCTACCCCTAATTTATACCTTCGACATAGAAACGAACCTAGTAATTTCATAGGATTAGCT
*
23408 TTCGGGAAAAAG-GCTAAA
131 TTCAGGAAAAAGTGCTAAA
* *
23426 ATATCCCTAAGGTTTACCATCGACTTAGAAGTGCCTGATGATCTTAAGGGACTTGAAAAAGCAAA
1 ATATCCCTAAGGCTTACCATCGACTTAGAAGTGCCTGATGATCCTAAGGGACTTGAAAAA-CAAA
** ** * * * *
23491 AATGAA-CCTATTCCTAATTTATACCTTC-AGTGTAGAAACAGATCC-GGTAGTTTTATAGGATT
65 AAT-AAGCCTACCCCTAATTTATACCTTCGA-CATAGAAAC-GAACCTAGTAATTTCATAGGATT
*
23553 AGCTTTTAGG-AAAAGTGCTAAA
127 AGCTTTCAGGAAAAAGTGCTAAA
* * *
23575 ATATTCCTAAGGCTTACCATCGACTTAGGAGT-ACTCGATGATCCTAA
1 ATATCCCTAAGGCTTACCATCGACTTAGAAGTGCCT-GATGATCCTAA
23622 AAAACTTGAA
Statistics
Matches: 279, Mismatches: 54, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
147 1 0.00
148 127 0.46
149 143 0.51
150 8 0.03
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (149 bp):
ATATCCCTAAGGCTTACCATCGACTTAGAAGTGCCTGATGATCCTAAGGGACTTGAAAAACAAAA
ATAAGCCTACCCCTAATTTATACCTTCGACATAGAAACGAACCTAGTAATTTCATAGGATTAGCT
TTCAGGAAAAAGTGCTAAA
Found at i:25540 original size:5 final size:5
Alignment explanation
Indices: 25530--25555 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
25520 TTGGAACAAA
25530 TAAAT TAAAT TAAAT TAAAT TAAAT T
1 TAAAT TAAAT TAAAT TAAAT TAAAT T
25556 TCAAAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TAAAT
Found at i:25956 original size:165 final size:163
Alignment explanation
Indices: 25704--26248 Score: 419
Period size: 165 Copynumber: 3.3 Consensus size: 163
25694 ATAAATACAA
** * * * * * *
25704 AAAAAATTCAAAATTCATAAAATAAATTGAATTTTTCGAAATTGATTTAATAGGAATTCAATGAC
1 AAAAAATGAAAAAATCATAAAATAAA-TGGATTTTTCAAAATTGATTTAATATG-ATTAAATGAT
** * ** ** *
25769 AATATTAAATGAATTATAAAAATTCTAAATTGAGAAAAATTCTGCC-AAAAATATTTATAAAATA
64 AATATTTGATAAATT-TAAAAATTCTAAACCGAGAAAAACCCT-CCTAAAAACATTTATAAAATA
* *
25833 GAAAACTCGATTTCTTGAAAATGGGAGATTTTC-AAG
127 GAAAACTCAATTTCTTGAAAATAGGAGATTTTCAAAG
* * *
25869 AAAAAAATGAACAACTCATAAAATAAATGGATTTTTCAAAATTGATTTACTATGATTTAAATGAT
1 -AAAAAATGAAAAAATCATAAAATAAATGGATTTTTCAAAATTGATTTAATATGA-TTAAATGAT
* * ** **
25934 GATATTTGATAAATATTAAAAATTCTGAACCGAGAAAAACCCTCCTGTAAACATTTATGGAATAG
64 AATATTTGATAAAT-TTAAAAATTCTAAACCGAGAAAAACCCTCCTAAAAACATTTATAAAATAG
* * *
25999 AAAACTTAATTTTTTGGAAATAGGAGATTTTCAAAG
128 AAAACTCAATTTCTTGAAAATAGGAGATTTTCAAAG
* * * * * *
26035 AAAAAATGAAAAAATCATAAAAATAAATGGGTTTTTCAAAACTGATTAAATGGTGATTAGATAAT
1 AAAAAATGAAAAAATCAT-AAAATAAATGGATTTTTCAAAATTGATTTAAT-ATGATTAAATGAT
* * * * * *
26100 AATATTTGATAAATTTTAAAAATTTTAATCTGATG-AAAATCCTCTCGAAAAA-ATTTAT--AGT
64 AATATTTGATAAA-TTTAAAAATTCTAAACCGA-GAAAAACCCTC-CTAAAAACATTTATAAAAT
* *
26161 AGAAAACTTCATATTTC--GAAAATAAGAAGA-ATTCTAAA-
126 AGAAAAC-TCA-ATTTCTTGAAAAT-AGGAGATTTTC-AAAG
* * * * *
26199 AGAAAAT-AAAAAACTCATAGAATAAATGAATTTTTCAAAACTAATTTAAT
1 AAAAAATGAAAAAA-TCATAAAATAAATGGATTTTTCAAAATTGATTTAAT
26249 GATAACTAAA
Statistics
Matches: 306, Mismatches: 59, Indels: 31
0.77 0.15 0.08
Matches are distributed among these distances:
163 33 0.11
164 30 0.10
165 129 0.42
166 105 0.34
167 9 0.03
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.32
Consensus pattern (163 bp):
AAAAAATGAAAAAATCATAAAATAAATGGATTTTTCAAAATTGATTTAATATGATTAAATGATAA
TATTTGATAAATTTAAAAATTCTAAACCGAGAAAAACCCTCCTAAAAACATTTATAAAATAGAAA
ACTCAATTTCTTGAAAATAGGAGATTTTCAAAG
Found at i:26203 original size:166 final size:165
Alignment explanation
Indices: 25870--26269 Score: 388
Period size: 166 Copynumber: 2.4 Consensus size: 165
25860 ATTTTCAAGA
* * * * *
25870 AAAAAATGAACAACTCATAAAATAAATGGATTTTTCAAAATTGATTTACT-ATGATTTAAATGAT
1 AAAAAATGAAAAAATCATAAAATAAATGGATTTTTCAAAACTGATTTAATGATGATTTAAATAAT
* * *
25934 GATATTTGATAAATATTAAAAATTCTGAACCGAGAAAAACCCTCCTGTAAACATTTATGGAATAG
66 AATATTTGATAAATATTAAAAATTCTGAACCGAGAAAAACCCTCCTGAAAAAATTTAT-GAATAG
* * * * * *
25999 AAAACTTAATTTTTTGGAAATAGGAGATTTTCAAAG
130 AAAACTTAATATTTCGAAAATAGAAGATTCTAAAAG
* * * *
26035 AAAAAATGAAAAAATCATAAAAATAAATGGGTTTTTCAAAACTGATTAAATGGTGA-TTAGATAA
1 AAAAAATGAAAAAATCAT-AAAATAAATGGATTTTTCAAAACTGATTTAATGATGATTTAAATAA
* * * * *
26099 TAATATTTGATAAATTTTAAAAATT-TTAATCTGATG-AAAATCCT-CTCGAAAAAATTTAT-AG
65 TAATATTTGATAAATATTAAAAATTCTGAA-CCGA-GAAAAACCCTCCT-GAAAAAATTTATGAA
*
26160 TAGAAAACTTCATATTTCGAAAATAAGAAGAATTCTAAAAG
127 TAGAAAACTTAATATTTCGAAAAT-AGAAG-ATTCTAAAAG
* * * **
26201 --AAAAT-AAAAAACTCATAGAATAAATGAATTTTTCAAAACTAATTTAATGAT-AACTAAATAA
1 AAAAAATGAAAAAA-TCATAAAATAAATGGATTTTTCAAAACTGATTTAATGATGATTTAAATAA
*
26262 TAGTATTT
65 TAATATTT
26270 AAAGAATTTC
Statistics
Matches: 193, Mismatches: 33, Indels: 20
0.78 0.13 0.08
Matches are distributed among these distances:
162 1 0.01
163 48 0.25
164 30 0.16
165 25 0.13
166 85 0.44
167 4 0.02
ACGTcount: A:0.48, C:0.08, G:0.11, T:0.33
Consensus pattern (165 bp):
AAAAAATGAAAAAATCATAAAATAAATGGATTTTTCAAAACTGATTTAATGATGATTTAAATAAT
AATATTTGATAAATATTAAAAATTCTGAACCGAGAAAAACCCTCCTGAAAAAATTTATGAATAGA
AAACTTAATATTTCGAAAATAGAAGATTCTAAAAG
Found at i:27943 original size:21 final size:20
Alignment explanation
Indices: 27915--27953 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
27905 ACGTTATTTT
27915 TTATTATACATAACATAAAA
1 TTATTATACATAACATAAAA
* *
27935 TTATATATATATATCATAA
1 TTAT-TATACATAACATAA
27954 TATAATGTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
TTATTATACATAACATAAAA
Found at i:31120 original size:8 final size:8
Alignment explanation
Indices: 31107--31136 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
31097 AAATCAAAGA
31107 TGGGCACT
1 TGGGCACT
31115 TGGGCACT
1 TGGGCACT
31123 TGGGGCACT
1 T-GGGCACT
31132 TGGGC
1 TGGGC
31137 TTAAATTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.10, C:0.23, G:0.43, T:0.23
Consensus pattern (8 bp):
TGGGCACT
Found at i:31174 original size:17 final size:17
Alignment explanation
Indices: 31152--31184 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
31142 TTAAAGATGC
31152 AATTATATT-TTTATTTT
1 AATTAT-TTATTTATTTT
31169 AATTATTTATTTATTT
1 AATTATTTATTTATTT
31185 ATTAATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
AATTATTTATTTATTTT
Found at i:34185 original size:2 final size:2
Alignment explanation
Indices: 34178--34208 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
34168 GTTTGTTTAC
*
34178 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34209 GGTTGGAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:37872 original size:40 final size:40
Alignment explanation
Indices: 37827--37907 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
37817 AGTACTCTAA
37827 CAGCTAAATGAGTGTCTTGAAAAATAAGACTAATCTTACT
1 CAGCTAAATGAGTGTCTTGAAAAATAAGACTAATCTTACT
37867 CAGCTAAATGAGTGTCTTGAAAAATAAGACTAATCTTACT
1 CAGCTAAATGAGTGTCTTGAAAAATAAGACTAATCTTACT
37907 C
1 C
37908 TCTAATGTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.30
Consensus pattern (40 bp):
CAGCTAAATGAGTGTCTTGAAAAATAAGACTAATCTTACT
Found at i:44271 original size:13 final size:13
Alignment explanation
Indices: 44253--44277 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44243 CAATTATTCA
44253 TGTATCGATACAT
1 TGTATCGATACAT
44266 TGTATCGATACA
1 TGTATCGATACA
44278 ATATGCCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:44277 original size:33 final size:33
Alignment explanation
Indices: 44233--44297 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
44223 TCTGGGACAA
* *
44233 TGTATCAATACAATTAT-TCATGTATCGATACAT
1 TGTATCAATACAA-TATGCCATGTATAGATACAT
*
44266 TGTATCGATACAATATGCCATGTATAGATACA
1 TGTATCAATACAATATGCCATGTATAGATACA
44298 AAAGTGGTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 3 0.11
33 25 0.89
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (33 bp):
TGTATCAATACAATATGCCATGTATAGATACAT
Found at i:44370 original size:19 final size:19
Alignment explanation
Indices: 44325--44378 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 19
44315 ACTGCTAGTT
44325 TCATGTATCGATACAATTG
1 TCATGTATCGATACAATTG
44344 TGCATGTATCGATACAA-TG
1 T-CATGTATCGATACAATTG
44363 ATCATGTATCGATACA
1 -TCATGTATCGATACA
44379 TTATCAATAC
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATTG
Found at i:44546 original size:21 final size:21
Alignment explanation
Indices: 44497--44552 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
44487 TATTTTTACT
*
44497 TAAAACATTTGATTTAAAGCTC
1 TAAAACATTT-ATTCAAAGCTC
*
44519 GAAAACATTTATTCATAA-CTC
1 TAAAACATTTATTCA-AAGCTC
44540 TAAAACATTTATT
1 TAAAACATTTATT
44553 GATATTGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.38
Consensus pattern (21 bp):
TAAAACATTTATTCAAAGCTC
Found at i:46333 original size:28 final size:28
Alignment explanation
Indices: 46293--46364 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
46283 GGAATAAAGC
**
46293 CGGGGTTGGAGTATCCCCTCGGA-AGTAA
1 CGGGGTTGGAGTATCCCCGAGGAGA-TAA
*
46321 CGGGGTTGGAGTATCCCCGATGAGATAA
1 CGGGGTTGGAGTATCCCCGAGGAGATAA
*
46349 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
46365 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAGATAA
Found at i:46566 original size:263 final size:262
Alignment explanation
Indices: 46242--46736 Score: 796
Period size: 263 Copynumber: 1.9 Consensus size: 262
46232 TCAAAAATAA
* *
46242 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
* *
46307 CCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAGATAACGAGGTTGGAGTATCCTCGATTG
66 CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGA-ATAACGAGGTTGGAGTATCCTCGATTG
*
46372 TGAAAAATTGG-TATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAAATTG
130 TGAAAAATTGGTTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA-G-AAAATTA
* *
46436 GTGTTTTGAAAATAAAACCGGGGTTGGAGTAT-CCCGATTACGAAAAAATTAGTGTTTTAGCAAT
193 GTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTACGAAAAAATTAGTGTTTTAGCAAT
46500 AAAAC
258 AAAAC
* * *
46505 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTGGAAATAAAGTCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
* *
46570 CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGATTAACGGGGTTGGAGTATCCTCGATTGT
66 CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCTCGATTGT
** * *
46635 GAAATTTTGGTTTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTATAGAAAATTAGTG
131 GAAAAATTGGTTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTG
*
46700 TTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATT
196 TTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATT
46737 GTGGAGAATT
Statistics
Matches: 213, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
261 35 0.16
262 42 0.20
263 136 0.64
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.29
Consensus pattern (262 bp):
CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCTCGATTGT
GAAAAATTGGTTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTG
TTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTACGAAAAAATTAGTGTTTTAGCAATAAA
AC
Found at i:46573 original size:51 final size:51
Alignment explanation
Indices: 46352--46573 Score: 257
Period size: 51 Copynumber: 4.3 Consensus size: 51
46342 GAGATAACGA
* * * *
46352 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTA-TTTTGGAAATAAAACCGG
* * * * *
46404 AGTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTAGTATTTTGGAAATAAAACCGG
* * * *
46457 GGTTGGAGTAT-CCCGATTACGAAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATG-AAAAATTAGTATTTTGGAAATAAAACCGG
* **
46508 GGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGG
46559 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
46574 TCGAAAATAA
Statistics
Matches: 146, Mismatches: 20, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
50 2 0.01
51 74 0.51
52 33 0.23
53 26 0.18
54 11 0.08
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGG
Found at i:46590 original size:28 final size:28
Alignment explanation
Indices: 46556--46626 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
46546 GAAATAAAGT
46556 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCC-CGATAAATAA
* *
46584 CGGGGTTGGAGTAT-CCCCGATGATTAA
1 CGGGGTTGGAGTATCCCCCGATAAATAA
46611 CGGGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
46627 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 3 0.08
27 21 0.54
28 15 0.38
ACGTcount: A:0.23, C:0.20, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCCGATAAATAA
Found at i:46717 original size:51 final size:51
Alignment explanation
Indices: 46352--46736 Score: 219
Period size: 51 Copynumber: 7.4 Consensus size: 51
46342 GAGATAACGA
* * * * *
46352 GGTTGGAGTATCCTCGATTGT-GAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATAG-AAAATTAGT-GTTTTGAAAATAAAATCGG
* * * *
46404 AGTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATA-G-AAAATTAGTGTTTTGAAAATAAAATCGG
* * * *
46457 GGTTGGAGTAT-CCCGATTACGAAAAAATTAGTGTTTT-AGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTA-TAGAAAATTAGTGTTTTGA-AAATAAAATCGG
* * * *
46508 GGTTGGAGTATCCCCGATTAT-GAAAAATTAATATTTTGGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATAG-AAAATTAGTGTTTTGAAAATAAAATCGG
** *** * *** ** *
46559 GGTTGGAGTATCCCCTCGAAAATA-ACGGGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTAT-CCC-CGATTATAGA--AAATT--AGTGT-TTTGAAAATAAAATCGG
* * * * * *
46614 GGTTGGAGTATCCTCGATTGT-GAAATTTTGGTTTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATAGAAA-ATTAG--TGTTTTGAAAATAAAATCGG
*
46667 AGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGG
* *
46718 AGTTGGAATATCCCCGATT
1 GGTTGGAGTATCCCCGATT
46737 GTGGAGAATT
Statistics
Matches: 253, Mismatches: 58, Indels: 45
0.71 0.16 0.13
Matches are distributed among these distances:
50 2 0.01
51 106 0.42
52 43 0.17
53 61 0.24
54 19 0.08
55 14 0.06
56 5 0.02
57 3 0.01
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGG
Found at i:48489 original size:11 final size:11
Alignment explanation
Indices: 48473--48501 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
48463 AAGGAATATG
48473 GAGTTTTTGGA
1 GAGTTTTTGGA
48484 GAGTTTTTGGA
1 GAGTTTTTGGA
48495 G-GTTTTT
1 GAGTTTTT
48502 TGGTGGTGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.14, C:0.00, G:0.34, T:0.52
Consensus pattern (11 bp):
GAGTTTTTGGA
Found at i:49131 original size:13 final size:13
Alignment explanation
Indices: 49113--49138 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49103 ACAAAGATCC
49113 ATGTATCGATACA
1 ATGTATCGATACA
49126 ATGTATCGATACA
1 ATGTATCGATACA
49139 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:49134 original size:33 final size:33
Alignment explanation
Indices: 49092--49158 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
49082 AAAATTTCCA
***
49092 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
49125 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
49158 A
1 A
49159 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:49218 original size:13 final size:13
Alignment explanation
Indices: 49200--49224 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49190 ACAATACTTA
49200 TGTATCGATACAT
1 TGTATCGATACAT
49213 TGTATCGATACA
1 TGTATCGATACA
49225 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:49301 original size:21 final size:21
Alignment explanation
Indices: 49275--49372 Score: 187
Period size: 21 Copynumber: 4.7 Consensus size: 21
49265 GTTAGGACCC
49275 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
49296 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
*
49317 TGTATCGATACATTCCACAAA
1 TGTATCGATACATTCTACAAA
49338 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
49359 TGTATCGATACATT
1 TGTATCGATACATT
49373 TGGAATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 75 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.34
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:50214 original size:55 final size:54
Alignment explanation
Indices: 50121--50972 Score: 765
Period size: 55 Copynumber: 14.9 Consensus size: 54
50111 AAAGTGTATT
* ** *
50121 CTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTC
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
* * * * *
50176 CTGGTTTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCGTT-AAGAGGTGTC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTC
* * *
50231 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
* *
50286 CTGCTCTTT---GA--GG-A-TGCCACCAACTTGTGTGGGGTTTGAAAGGTGTC
1 CTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
* * * *
50333 CTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTC
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
* * * *
50388 CTGCTCTTTGGGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGAAAAAGCATC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCGTC
* * *
50449 CTGCTCTTTGAGGACT-GAAGGTGCCACCAACTCGGGTGGGCTTTGAAAAGAAAAAGCATC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCGTC
* * * *
50509 CTGCTCTTTGAGGACT-GAAGGTGTCACCAACTCGGGTGGGCTTTGAAAAGAAAAAGCATC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCGTC
50569 CTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTC
*
50629 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAGAGGCGAAGGCGTC
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT--GA----AAGGCGTC
50690 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGCGTC
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTC
* * *
50745 CTACTCTTTGAGGACTAGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGTGTC
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTC
* * *
50806 CTGCTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGGGGGCTTTAAAAGGCGTC
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
50861 CTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTC
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTC
*
50922 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG
50973 AAAAGGCATC
Statistics
Matches: 703, Mismatches: 51, Indels: 86
0.84 0.06 0.10
Matches are distributed among these distances:
47 40 0.06
49 1 0.00
50 3 0.00
52 2 0.00
53 1 0.00
54 11 0.02
55 270 0.38
56 8 0.01
58 4 0.01
60 161 0.23
61 193 0.27
62 4 0.01
64 1 0.00
65 4 0.01
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.26
Consensus pattern (54 bp):
CTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTC
Found at i:50672 original size:61 final size:59
Alignment explanation
Indices: 50300--50998 Score: 769
Period size: 61 Copynumber: 11.9 Consensus size: 59
50290 TCTTTGAGGA
* * * *
50300 TGCCACCAACTTGTGTGGGGTTT----GA-AAGGTGTCCTGCTCTTTGAGGACTAGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAG
* * * *
50355 TGCCACCAACTTGTGTGGGC-TT---CGA-AAGGGGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
* * * *
50410 TGCCACCCACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACT-GAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
* * * * *
50470 TGCCACCAACTCGGGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACT-GAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
* * * * * *
50530 TGTCACCAACTCGGGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACT-GAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAA-G
50590 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAG
* * *
50651 TGCCACCAACTTATGTGGGCTTTAAGAGGCGAAGGCGTCCTGCTCTTTGAGGACTGGGAAG
1 TGCCACCAACTTGTGTGGGCTTTAA-AAGAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAG
*
50712 TGCCACCAACTTGTGTGGGCTTT---A-AG-AGGCGTCCTACTCTTTGAGGACTAGGAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAG
* * *
50767 TGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGTGTCCTGCTCTTTGAGGATTGGGAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAG
*
50828 TGCCACCAACTTGTGGGGGCTTT---A-A-AAGGCGTCCTGCTCTTTGAGGACTAGGAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAG
50883 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACT-GGAAG
* *
50944 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCTTTGAGGACT
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTCCTGCTCTTTGAGGACT
50999 AAAAAGTGGA
Statistics
Matches: 577, Mismatches: 43, Indels: 42
0.87 0.06 0.06
Matches are distributed among these distances:
54 6 0.01
55 160 0.28
56 4 0.01
58 3 0.01
59 4 0.01
60 169 0.29
61 227 0.39
62 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.25
Consensus pattern (59 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGAAG
Found at i:50969 original size:116 final size:113
Alignment explanation
Indices: 50121--50972 Score: 898
Period size: 116 Copynumber: 7.4 Consensus size: 113
50111 AAAGTGTATT
* ** * * * *
50121 CTGCTTTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGGTTTTTG
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
* * *
50186 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCGTT---A-AG-AGGTGTC
65 AGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTC
* *
50231 CTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTT-
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
* *
50295 --GA--GG-A-TGCCACCAACTTGTGTGGGGTTT----GA-AAGGTGTC
65 AGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTC
* * ** *
50333 CTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTGCTCTTTG
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
* * * * * *
50398 GGGACTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGAAAAAGCATC
65 AGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCGTC
* * *
50449 CTGCTCTTTGAGGACT-GAAGGTGCCACCAACTCGGGTGGGCTTTGAAAAGAAAAAGCATCCTGC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAG-----GCGTCCTGC
* * * * * *
50513 TCTTTGAGGACT-GAAGGTGTCACCAACTCGGGTGGGCTTTGAAAAGAAAAAGCATC
59 TCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGAGAAGGCGTC
50569 CTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGC
1 CTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTT---A--A-AAGGCGTCCTGC
* * *
50633 TCTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAGAGGCGAAGGCGTC
59 TCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAA-AAGAGAAGGCGTC
* *
50690 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTACTCTTTG
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
* *
50755 AGGACTAGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGAGAAGGTGTC
65 AGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTC
* *
50806 CTGCTCTTTGAGGATTGGGAAGTGCCACCAACTTGTGGGGGCTTTAAAAGGCGTCCTGCTCTTTG
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTG
50871 AGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTC
65 AGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAGAAGGCGTC
50922 CTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 CTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
50973 AAAAGGCATC
Statistics
Matches: 645, Mismatches: 61, Indels: 66
0.84 0.08 0.09
Matches are distributed among these distances:
102 84 0.13
103 4 0.01
104 1 0.00
105 3 0.00
107 3 0.00
108 1 0.00
109 3 0.00
110 74 0.11
114 2 0.00
115 23 0.04
116 245 0.38
117 1 0.00
119 1 0.00
120 103 0.16
121 62 0.10
122 28 0.04
123 3 0.00
124 1 0.00
125 3 0.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.26
Consensus pattern (113 bp):
CTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGA
GGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAGGCGTC
Found at i:51988 original size:1 final size:1
Alignment explanation
Indices: 51984--52050 Score: 53
Period size: 1 Copynumber: 67.0 Consensus size: 1
51974 TTTTCTCTCA
* * * * * * * * *
51984 TTTTTCTTTGTTTTGTTTCTTTTGTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
52049 TT
1 TT
52051 GAAGAGAAGG
Statistics
Matches: 48, Mismatches: 18, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (1 bp):
T
Found at i:52006 original size:9 final size:8
Alignment explanation
Indices: 51984--52050 Score: 59
Period size: 9 Copynumber: 8.2 Consensus size: 8
51974 TTTTCTCTCA
*
51984 TTTTTCTT
1 TTTTTGTT
51992 TGTTTTGTT
1 T-TTTTGTT
52001 TCTTTTGTT
1 T-TTTTGTT
*
52010 TTTTTTTGT
1 TTTTTGT-T
52019 TTTTTG-T
1 TTTTTGTT
52026 TTTTTGTT
1 TTTTTGTT
52034 TTTTT-TT
1 TTTTTGTT
52041 CTTTTT-TT
1 -TTTTTGTT
52049 TT
1 TT
52051 GAAGAGAAGG
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
7 11 0.22
8 19 0.37
9 21 0.41
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.87
Consensus pattern (8 bp):
TTTTTGTT
Found at i:52011 original size:24 final size:24
Alignment explanation
Indices: 51984--52047 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
51974 TTTTCTCTCA
*
51984 TTTTTCTTTGTTTTGTT-TCTTTTG
1 TTTTTTTTTGTTTT-TTGTCTTTTG
*
52008 TTTTTTTTTGTTTTTTGTTTTTTG
1 TTTTTTTTTGTTTTTTGTCTTTTG
*
52032 TTTTTTTTTCTTTTTT
1 TTTTTTTTTGTTTTTT
52048 TTTGAAGAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
23 2 0.06
24 34 0.94
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.86
Consensus pattern (24 bp):
TTTTTTTTTGTTTTTTGTCTTTTG
Found at i:52050 original size:10 final size:10
Alignment explanation
Indices: 51965--52050 Score: 59
Period size: 10 Copynumber: 8.2 Consensus size: 10
51955 CTTAAGCAGG
51965 TTCTTTTTCTT
1 TTCTTTTT-TT
**
51976 TTCTCTCATTT
1 TTCT-TTTTTT
51987 TTCTTTGTTTTGT
1 TTC-TT-TTTT-T
52000 TTCTTTTGTTT
1 TTCTTTT-TTT
*
52011 TT-TTTTGTT
1 TTCTTTTTTT
*
52020 TT-TTGTTTT
1 TTCTTTTTTT
*
52029 TTGTTTTTTT
1 TTCTTTTTTT
52039 TTCTTTTTTT
1 TTCTTTTTTT
52049 TT
1 TT
52051 GAAGAGAAGG
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
9 11 0.18
10 21 0.35
11 15 0.25
12 9 0.15
13 4 0.07
ACGTcount: A:0.01, C:0.09, G:0.07, T:0.83
Consensus pattern (10 bp):
TTCTTTTTTT
Found at i:62918 original size:13 final size:13
Alignment explanation
Indices: 62900--62925 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62890 CAATTTTTTG
62900 TGTATCGATACAT
1 TGTATCGATACAT
62913 TGTATCGATACAT
1 TGTATCGATACAT
62926 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:63011 original size:20 final size:20
Alignment explanation
Indices: 62986--63058 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
62976 ATCTTTTTTT
62986 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
63006 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
63027 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
63047 ATGTATCGATAC
1 ATGTATCGATAC
63059 TTTGAGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:63037 original size:41 final size:42
Alignment explanation
Indices: 62964--63058 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
62954 CTGCCAAGAA
*
62964 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
63006 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
63047 ATGTATCGATAC
1 ATGTATCGATAC
63059 TTTGAGTTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:63696 original size:16 final size:16
Alignment explanation
Indices: 63665--63710 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
63655 CTCTCCTTTG
63665 TCTCCCCCGTTTAAAAAA
1 TCTCCCCC--TTAAAAAA
63683 TCTCCCCCTTAAAAAA
1 TCTCCCCCTTAAAAAA
63699 TCTCCCCCTTAA
1 TCTCCCCCTTAA
63711 TCAAGTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 20 0.71
18 8 0.29
ACGTcount: A:0.30, C:0.39, G:0.02, T:0.28
Consensus pattern (16 bp):
TCTCCCCCTTAAAAAA
Found at i:65534 original size:13 final size:13
Alignment explanation
Indices: 65516--65554 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
65506 ATAATCACCC
*
65516 TGTATCGATACAG
1 TGTATCGATACAA
65529 TGTATCGATACAA
1 TGTATCGATACAA
65542 TGTATCGATACAA
1 TGTATCGATACAA
65555 CAAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:65565 original size:20 final size:20
Alignment explanation
Indices: 65540--65618 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
65530 GTATCGATAC
65540 AATGTATCGATACAACAAAA
1 AATGTATCGATACAACAAAA
* *
65560 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACA-ACAA----AA
*
65585 GATGTATCGATAC-ACAAAA
1 AATGTATCGATACAACAAAA
65604 ACATGTATCGATACA
1 A-ATGTATCGATACA
65619 TTTTGGACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.02
20 26 0.57
21 3 0.07
23 3 0.07
25 13 0.28
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAACAAAA
Found at i:67665 original size:15 final size:15
Alignment explanation
Indices: 67629--67666 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
67619 TACATCAATT
* *
67629 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
67644 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
67659 TCATTTTG
1 TCATTTTG
67667 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:71748 original size:13 final size:13
Alignment explanation
Indices: 71730--71755 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71720 CAATTTTTTG
71730 TGTATCGATACAT
1 TGTATCGATACAT
71743 TGTATCGATACAT
1 TGTATCGATACAT
71756 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:71841 original size:20 final size:20
Alignment explanation
Indices: 71816--71888 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
71806 ATCTTTTTTT
71816 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
71836 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
71857 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
71877 ATGTATCGATAC
1 ATGTATCGATAC
71889 TTTGAGTTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:71867 original size:41 final size:42
Alignment explanation
Indices: 71794--71888 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
71784 CTGCCAAGAA
*
71794 ATGTATCGATACATCTTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
71836 ATGTATCGATACATC-TTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
71877 ATGTATCGATAC
1 ATGTATCGATAC
71889 TTTGAGTTGT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 37 0.71
42 15 0.29
ACGTcount: A:0.29, C:0.18, G:0.13, T:0.40
Consensus pattern (42 bp):
ATGTATCGATACATCTTTTTTCATGTATCGATACATTGCAAC
Found at i:74673 original size:28 final size:29
Alignment explanation
Indices: 74640--74711 Score: 87
Period size: 28 Copynumber: 2.6 Consensus size: 29
74630 GGAATAAAGC
74640 CGGGGTTGGAGTATCCCCTCGA-AAG-TAA
1 CGGGGTTGGAGTATCCCC-CGATAAGATAA
* *
74668 CGGGGTTAGAGTAT-CCCCGATGAGATAA
1 CGGGGTTGGAGTATCCCCCGATAAGATAA
*
74696 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
74712 TCGATTGTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.08
27 5 0.14
28 28 0.76
29 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.22
Consensus pattern (29 bp):
CGGGGTTGGAGTATCCCCCGATAAGATAA
Found at i:74861 original size:104 final size:102
Alignment explanation
Indices: 74699--74919 Score: 275
Period size: 104 Copynumber: 2.1 Consensus size: 102
74689 GAGATAACGA
* * * *
74699 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATCC
1 GGTTGGAGTATCC-CGATTGTGAAAAATTAGTAGTTTTAGAAATAAAACCGGAGTTGGAGTATCC
** *
74764 CCGATTAAAGGAAAAATTGGTGTTTT-GAAAATAAAACCGG
65 CCGATT--AGGAAAAATTAATATTTTAG-AAATAAAACCGG
* *
74804 GGTTGGAGTATCCCGATTGTGGAAAAATTAGT-GTTTTAGCAATAAAACCGGGGTTGGAGTATCC
1 GGTTGGAGTATCCCGATTGT-GAAAAATTAGTAGTTTTAGAAATAAAACCGGAGTTGGAGTATCC
* **
74868 CCGATTATGAAAAATTAATATTTTAGAAATAAAGTCGG
65 CCGATTAGGAAAAATTAATATTTTAGAAATAAAACCGG
74906 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
74920 CTCGAAAATA
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
102 38 0.37
103 1 0.01
104 40 0.39
105 23 0.23
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (102 bp):
GGTTGGAGTATCCCGATTGTGAAAAATTAGTAGTTTTAGAAATAAAACCGGAGTTGGAGTATCCC
CGATTAGGAAAAATTAATATTTTAGAAATAAAACCGG
Found at i:74922 original size:263 final size:262
Alignment explanation
Indices: 74589--75088 Score: 779
Period size: 263 Copynumber: 1.9 Consensus size: 262
74579 TCGAAAATAA
* * *
74589 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
* *
74654 CCCCTCGAAAGTAACGGGGTTAGAGTATCCCCGATGAGATAACGAGGTTGGAGTATCCTCGATTG
66 CCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATGA-ATAACGAGGTTGGAGTATCCCCGATTG
*
74719 TGAAAAATTGG-TATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAAATTG
130 TGAAAAATTGGTTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAA-G-AAAATTA
* *
74783 GTGTTTTGAAAATAAAACCGGGGTTGGAGTAT-CCCGATTGTGGAAAAATTAGTGTTTTAGCAAT
193 GTGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAAT
74847 AAAAC
258 AAAAC
* * *
74852 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAGTCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
* * * *
74917 CCCCTCGAAAATAACGGGGTTGGAGTATCTCCGATGATTAACGGGGTTGGAGTATCCCCGATTGT
66 CCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGATTGT
* * * *
74982 GAAAATTTGGTTTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCTCGATTATAGAAAATTAGTG
131 GAAAAATTGGTTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTG
*
75047 TTTTGAAAATAAAATCGGAGTTGGAATATCCCCGATTGTGGA
196 TTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGA
75089 GAATTGAGAA
Statistics
Matches: 215, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
261 35 0.16
262 47 0.22
263 133 0.62
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (262 bp):
CGGGGTTGGAGTATCCCCAATTATGAAAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTAT
CCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATGAATAACGAGGTTGGAGTATCCCCGATTGT
GAAAAATTGGTTATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGAAAATTAGTG
TTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAAAAATTAGTGTTTTAGCAATAAA
AC
Found at i:74937 original size:28 final size:28
Alignment explanation
Indices: 74903--74975 Score: 96
Period size: 27 Copynumber: 2.6 Consensus size: 28
74893 GAAATAAAGT
74903 CGGGGTTGGAGTATCCCCTCGA-AAATAA
1 CGGGGTTGGAGTATCCCC-CGATAAATAA
* * *
74931 CGGGGTTGGAGTAT-CTCCGATGATTAA
1 CGGGGTTGGAGTATCCCCCGATAAATAA
74958 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
74976 GATTGTGAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 3 0.08
27 20 0.51
28 16 0.41
ACGTcount: A:0.22, C:0.21, G:0.33, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCCGATAAATAA
Found at i:75064 original size:51 final size:51
Alignment explanation
Indices: 74699--75083 Score: 262
Period size: 51 Copynumber: 7.4 Consensus size: 51
74689 GAGATAACGA
* * * * *
74699 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGT-GTTTTGAAAATAAAATCGG
* * * *
74751 AGTTGGAGTATCCCCGATTAAAGGAAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTAGTGTTTTGAAAATAAAATCGG
* * *
74804 GGTTGGAGTAT-CCCGATTGTGGAAAAATTAGTGTTTT-AGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTGTTTTGA-AAATAAAATCGG
* * *
74855 GGTTGGAGTATCCCCGATTATGAAAAATTAATATTTT-AGAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGA-AAATAAAATCGG
** *** * ** ** *
74906 GGTTGGAGTATCCCCTCGAAAAT-AACGGGGTTGGAGTATCTCCGATGAT-TAA-CGG
1 GGTTGGAGTAT-CCC-CGATTATGAA--AAATT--AGTGT-TTTGAAAATAAAATCGG
* * * * *
74961 GGTTGGAGTATCCCCGATTGTGAAAATTTGGTTTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAG--TGTTTTGAAAATAAAATCGG
* *
75014 AGTTGGAGTATCCTCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTAGTGTTTTGAAAATAAAATCGG
* *
75065 AGTTGGAATATCCCCGATT
1 GGTTGGAGTATCCCCGATT
75084 GTGGAGAATT
Statistics
Matches: 261, Mismatches: 53, Indels: 39
0.74 0.15 0.11
Matches are distributed among these distances:
50 2 0.01
51 112 0.43
52 44 0.17
53 62 0.24
54 18 0.07
55 14 0.05
56 5 0.02
57 3 0.01
58 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGAAAATAAAATCGG
Found at i:77466 original size:13 final size:13
Alignment explanation
Indices: 77448--77473 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77438 ACAAAGATCC
77448 ATGTATCGATACA
1 ATGTATCGATACA
77461 ATGTATCGATACA
1 ATGTATCGATACA
77474 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:77469 original size:33 final size:33
Alignment explanation
Indices: 77427--77493 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
77417 AAAATTTCCA
***
77427 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
77460 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
77493 A
1 A
77494 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:77537 original size:19 final size:18
Alignment explanation
Indices: 77513--77582 Score: 78
Period size: 19 Copynumber: 4.1 Consensus size: 18
77503 CAGTAGCTAA
77513 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
77532 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
77547 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
*
77564 TTATGTATCAATACAAAC
1 TTATGTATCGATACAAAC
77582 T
1 T
77583 ATTGAATTTC
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.25
14 1 0.02
16 2 0.05
18 6 0.14
19 24 0.55
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.36
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:77553 original size:13 final size:13
Alignment explanation
Indices: 77535--77559 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77525 ACAATACTTA
77535 TGTATCGATACAT
1 TGTATCGATACAT
77548 TGTATCGATACA
1 TGTATCGATACA
77560 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:77557 original size:32 final size:32
Alignment explanation
Indices: 77516--77578 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
77506 TAGCTAATTA
* *
77516 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCAATACAT
77548 TGTATCGATACAAAACTTATGTATCAATACA
1 TGTATCGATACAAAACTTATGTATCAATACA
77579 AACTATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCAATACAT
Found at i:77646 original size:21 final size:21
Alignment explanation
Indices: 77616--77671 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
77606 GTTGGGACCC
*
77616 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCCACAAA
*
77637 TGTATTGATACATTCCACAAA
1 TGTATCGATACATTCCACAAA
77658 TGTATCGATACATT
1 TGTATCGATACATT
77672 GGAATTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTCCACAAA
Found at i:79684 original size:47 final size:48
Alignment explanation
Indices: 79621--79728 Score: 200
Period size: 47 Copynumber: 2.3 Consensus size: 48
79611 ATAGTAACCC
*
79621 ATGTATCGATACAAAGAACATTGTATCGATACATCTGGGTTTTTCCAA
1 ATGTATCAATACAAAGAACATTGTATCGATACATCTGGGTTTTTCCAA
79669 ATGTATCAATA-AAAGAACATTGTATCGATACATCTGGGTTTTTCCAA
1 ATGTATCAATACAAAGAACATTGTATCGATACATCTGGGTTTTTCCAA
79716 ATGTATCAATACA
1 ATGTATCAATACA
79729 TCATTCAATG
Statistics
Matches: 58, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
47 47 0.81
48 11 0.19
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (48 bp):
ATGTATCAATACAAAGAACATTGTATCGATACATCTGGGTTTTTCCAA
Found at i:100480 original size:76 final size:76
Alignment explanation
Indices: 100335--100639 Score: 418
Period size: 76 Copynumber: 4.0 Consensus size: 76
100325 ATCCCCAATT
** * * * * * *
100335 ATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCTCCT-AAAAATAACAGGGTTG
1 ATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTGTCCCCTCGAAAATAACAGGGTTG
100399 GAGTATCCTCG
66 GAGTATCCTCG
* *
100410 ATGAAAAATTGATGTTTTAAAAACAAAACCGAGGTTGGAGTGTCCCCTCGAAAATAACAGGGTTG
1 ATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTGTCCCCTCGAAAATAACAGGGTTG
*
100475 GAGTATCCCCG
66 GAGTATCCTCG
* * * *
100486 ATGAAAAATTGATGTTTTAGAAATAAAA-CTAGGGTTGGAGTGTCCCCTCGGAAATAACGGGGCT
1 ATGAAAAATTGATGTTTTAGAAATAAAACCGA-GGTTGGAGTGTCCCCTCGAAAATAACAGGGTT
100550 GGAGTATCCTCG
65 GGAGTATCCTCG
*
100562 ATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTGTCCCCTC-AGAAATAACGGGGTT
1 ATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTGTCCCCTCGA-AAATAACAGGGTT
*
100626 GGAATATCCTCG
65 GGAGTATCCTCG
100638 AT
1 AT
100640 TGTGAAAAGT
Statistics
Matches: 204, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
75 41 0.20
76 161 0.79
77 2 0.01
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (76 bp):
ATGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTGTCCCCTCGAAAATAACAGGGTTG
GAGTATCCTCG
Found at i:100580 original size:152 final size:151
Alignment explanation
Indices: 100260--100639 Score: 444
Period size: 152 Copynumber: 2.5 Consensus size: 151
100250 TCCATTATAG
* * * * * *
100260 AAAATAGATGTTTCAAAAATAAAATCG-GGATTGGAGTATACCCGT-GAAAATAA-TGAGGTTGG
1 AAAATTGATGTTTTAAAAATAAAACCGAGG-TTGGAGTGT-CCCCTCGAAAATAACAG-GGTTGG
* * *
100322 AGTATCCCCAATTATGAAAAATCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCTCCTAAAA
63 AGTATCCCC---GATGAAAAATCAATATTTTAGAAATAAAACCAGGGTTAGAGTATCCCCTAAAA
*
100387 ATAACAGGGTTGGAGTATCCTCGATGA
125 ATAACAGGGCTGGAGTATCCTCGATGA
*
100414 AAAATTGATGTTTTAAAAACAAAACCGAGGTTGGAGTGTCCCCTCGAAAATAACAGGGTTGGAGT
1 AAAATTGATGTTTTAAAAATAAAACCGAGGTTGGAGTGTCCCCTCGAAAATAACAGGGTTGGAGT
** * * * * **
100479 ATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACTAGGGTTGGAGTGTCCCCTCGGAAATAAC
66 ATCCCCGATGAAAAATCAATATTTTAGAAATAAAACCAGGGTTAGAGTATCCCCT-AAAAATAAC
*
100544 GGGGCTGGAGTATCCTCGATGA
130 AGGGCTGGAGTATCCTCGATGA
* * *
100566 AAAATTGATGTTTTAGAAATAAAACCGAGGTTGGAGTGTCCCCTC-AGAAATAACGGGGTTGGAA
1 AAAATTGATGTTTTAAAAATAAAACCGAGGTTGGAGTGTCCCCTCGA-AAATAACAGGGTTGGAG
*
100630 TATCCTCGAT
65 TATCCCCGAT
100640 TGTGAAAAGT
Statistics
Matches: 196, Mismatches: 25, Indels: 12
0.84 0.11 0.05
Matches are distributed among these distances:
151 41 0.21
152 94 0.48
153 4 0.02
154 54 0.28
155 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.26
Consensus pattern (151 bp):
AAAATTGATGTTTTAAAAATAAAACCGAGGTTGGAGTGTCCCCTCGAAAATAACAGGGTTGGAGT
ATCCCCGATGAAAAATCAATATTTTAGAAATAAAACCAGGGTTAGAGTATCCCCTAAAAATAACA
GGGCTGGAGTATCCTCGATGA
Found at i:100678 original size:51 final size:50
Alignment explanation
Indices: 100623--100952 Score: 276
Period size: 51 Copynumber: 6.5 Consensus size: 50
100613 AAATAACGGG
* * * * * *
100623 GTTGGAATATCCTCGATTGTGAAAAGTCAGTGTTCTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAA-TGAGTGTTTTAGAAATAAAATCGGA
* * *
100674 GTTGGAATATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGAA
1 GTTGGAGTATCCCCGATTAT-GAAAATGAGTGTTTTAGAAATAAAATCGGA
** * * *
100725 GTTGGAGTATCCCTTATTAAGAGAAATTGA-TGTTTTGGAAATGAAATCGG-
1 GTTGGAGTATCCCCGATTATGA-AAA-TGAGTGTTTTAGAAATAAAATCGGA
* * * * *
100775 GATTGGAGTATCCCCGATTGTGAAAAGTCAATGTTCTAGAAATAAAATCGAA
1 G-TTGGAGTATCCCCGATTATGAAAA-TGAGTGTTTTAGAAATAAAATCGGA
* *
100827 GTTGGAGTATCCTCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATGAGTGTTTTAGAAATAAAATCGGA
* * * * *
100878 GCTAGAGTATCCCCGATTAAGAGAAATTGA-TGTTTTGGAAA-AGAAACTGGGA
1 GTTGGAGTATCCCCGATTATGA-AAA-TGAGTGTTTTAGAAATA-AAA-TCGGA
*
100930 -TTGGAGTATCCCCGA-GATGAAAA
1 GTTGGAGTATCCCCGATTATGAAAA
100953 ATCTAGAAAT
Statistics
Matches: 225, Mismatches: 43, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
49 3 0.01
50 14 0.06
51 189 0.84
52 19 0.08
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTATGAAAATGAGTGTTTTAGAAATAAAATCGGA
Found at i:100687 original size:79 final size:76
Alignment explanation
Indices: 100335--100679 Score: 270
Period size: 76 Copynumber: 4.5 Consensus size: 76
100325 ATCCCCAATT
* * * * * * * * * *
100335 ATGAAAAA-TCAATATTTTAGAAATAAAACCGGGGTTAGAGTATCTCCT-AAAAATAACAGGGTT
1 ATGAAAAAGTC-ATGTTCTAGAAATAAAATCGGAGTTGGAGTGTCCCCTCAGAAATAACGGGGCT
*
100398 GGAGTATCCTCG
65 GGAATATCCTCG
* * * * * * * *
100410 ATGAAAAATTGATGTTTTAAAAACAAAA-CCGAGGTTGGAGTGTCCCCTC-GAAAATAACAGGGT
1 ATGAAAAAGTCATGTTCTAGAAATAAAATCGGA-GTTGGAGTGTCCCCTCAG-AAATAACGGGGC
* *
100473 TGGAGTATCCCCG
64 TGGAATATCCTCG
* * * * *
100486 ATGAAAAATTGATGTTTTAGAAATAAAACTAGG-GTTGGAGTGTCCCCTCGGAAATAACGGGGCT
1 ATGAAAAAGTCATGTTCTAGAAATAAAA-TCGGAGTTGGAGTGTCCCCTCAGAAATAACGGGGCT
*
100550 GGAGTATCCTCG
65 GGAATATCCTCG
* * * * *
100562 ATGAAAAATTGATGTTTTAGAAATAAAA-CCGAGGTTGGAGTGTCCCCTCAGAAATAACGGGGTT
1 ATGAAAAAGTCATGTTCTAGAAATAAAATCGGA-GTTGGAGTGTCCCCTCAGAAATAACGGGGCT
100626 GGAATATCCTCG
65 GGAATATCCTCG
* *
100638 ATTGTGAAAAGTCAGTGTTCTGGAAATAAAATCGGAGTTGGA
1 A-TG-AAAAAGTCA-TGTTCTAGAAATAAAATCGGAGTTGGA
100680 ATATCCCCGA
Statistics
Matches: 228, Mismatches: 29, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
74 3 0.01
75 34 0.15
76 158 0.69
77 3 0.01
78 7 0.03
79 20 0.09
80 3 0.01
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (76 bp):
ATGAAAAAGTCATGTTCTAGAAATAAAATCGGAGTTGGAGTGTCCCCTCAGAAATAACGGGGCTG
GAATATCCTCG
Found at i:100804 original size:153 final size:152
Alignment explanation
Indices: 100617--100944 Score: 512
Period size: 153 Copynumber: 2.1 Consensus size: 152
100607 CCTCAGAAAT
* * * * * *
100617 AACGGGGTTGGAATATCCTCGATTGTGAAAAGTCAGTGTTCTGGAAATAAAATCGGAGTTGGAAT
1 AACGGGATTGGAGTATCCCCGATTGTGAAAAGTCAATGTTCTAGAAATAAAATCGAAGTTGGAAT
* * **
100682 ATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGAAGTTGGAGTATCCCTTATTAAGA
66 ATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGAAGCTAGAGTATCCCCGATTAAGA
*
100747 GAAATTGATGTTTTGGAAATGA
131 GAAATTGATGTTTTGGAAAAGA
*
100769 AATCGGGATTGGAGTATCCCCGATTGTGAAAAGTCAATGTTCTAGAAATAAAATCGAAGTTGGAG
1 AA-CGGGATTGGAGTATCCCCGATTGTGAAAAGTCAATGTTCTAGAAATAAAATCGAAGTTGGAA
* *
100834 TATCCTCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGAGCTAGAGTATCCCCGATTAAG
65 TATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGAAGCTAGAGTATCCCCGATTAAG
100899 AGAAATTGATGTTTTGGAAAAGA
130 AGAAATTGATGTTTTGGAAAAGA
100922 AACTGGGATTGGAGTATCCCCGA
1 AAC-GGGATTGGAGTATCCCCGA
100945 GATGAAAAAT
Statistics
Matches: 160, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
152 3 0.02
153 157 0.98
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (152 bp):
AACGGGATTGGAGTATCCCCGATTGTGAAAAGTCAATGTTCTAGAAATAAAATCGAAGTTGGAAT
ATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGAAGCTAGAGTATCCCCGATTAAGA
GAAATTGATGTTTTGGAAAAGA
Found at i:101884 original size:13 final size:13
Alignment explanation
Indices: 101865--101903 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
101855 ACTATTTATG
101865 ATGTATCGATACA
1 ATGTATCGATACA
*
101878 CTGTATCGATACA
1 ATGTATCGATACA
101891 ATGTATCGATACA
1 ATGTATCGATACA
101904 TGAATAGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:102101 original size:53 final size:53
Alignment explanation
Indices: 102037--102173 Score: 229
Period size: 53 Copynumber: 2.6 Consensus size: 53
102027 CTACTACCAA
*
102037 TGTATCGATACATATTTTGTGTTTCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
102090 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
*
102143 TGTATCGAAACATATTTGTGTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
102174 TATGCAATTT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
53 65 0.83
54 13 0.17
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:102206 original size:20 final size:20
Alignment explanation
Indices: 102161--102214 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
102151 AACATATTTG
*
102161 TGTGTATCGATACTATGCAA
1 TGTGTATCGATACTATGAAA
* *
102181 TTTGTATCGATAC-ATTTAAA
1 TGTGTATCGATACTA-TGAAA
102201 TGTGTATCGATACT
1 TGTGTATCGATACT
102215 TTTCAGGGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.41
Consensus pattern (20 bp):
TGTGTATCGATACTATGAAA
Found at i:104681 original size:13 final size:13
Alignment explanation
Indices: 104663--104688 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
104653 AACTTCCTAG
104663 ATGTATCGATACA
1 ATGTATCGATACA
104676 ATGTATCGATACA
1 ATGTATCGATACA
104689 TTCTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:105597 original size:61 final size:60
Alignment explanation
Indices: 105495--105813 Score: 339
Period size: 55 Copynumber: 5.5 Consensus size: 60
105485 AAAGAAAGAG
* * * **
105495 GAAAATAAAGTGCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCATGTGGGCTTT
1 GAAAAGAAAG-GCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
105556 GAAAAGTAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT
1 GAAAAG-AAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
* *
105617 GCAAAGAGAAA-GCATCCTACTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT
1 G-AAA-AGAAAGGCGTCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTT
*
105678 -----GAAAGGCGTCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
** * * *
105733 -----GAAAGGTATCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGAGGGCTTT
1 GAAAAGAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
105788 -----GAAAGGCGTCCTGCTCTTTGAGGACT
1 GAAAAGAAAGGCGTCCTGCTCTTTGAGGACT
105814 AAAGTGTGAA
Statistics
Matches: 231, Mismatches: 21, Indels: 18
0.86 0.08 0.07
Matches are distributed among these distances:
54 9 0.04
55 115 0.50
61 92 0.40
62 13 0.06
63 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (60 bp):
GAAAAGAAAGGCGTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:105797 original size:110 final size:112
Alignment explanation
Indices: 105506--105813 Score: 388
Period size: 110 Copynumber: 2.7 Consensus size: 112
105496 AAAATAAAGT
* **
105506 GCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCATGTGGGCTTTGAAAAGTAAAGGCGT
1 GCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCGT
* **
105571 CCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAGAGAAA
59 CCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGAG--A
* *
105628 GCATCCTACTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
1 GCATCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
105693 CTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AA-AG-
65 CTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAGA
* * *
105738 GTATCCTGCTCTTTGAGGACTGAAAGGTGCCACTAACTTGTGAGGGCTTTGAAAGGCGTCCTGCT
1 GCATCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCT
105803 CTTTGAGGACT
65 CTTTGAGGACT
105814 AAAGTGTGAA
Statistics
Matches: 171, Mismatches: 14, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
109 4 0.02
110 66 0.39
113 2 0.01
114 2 0.01
116 52 0.30
117 1 0.01
122 44 0.26
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (112 bp):
GCATCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
TTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGAGA
Found at i:106891 original size:1 final size:1
Alignment explanation
Indices: 106885--106970 Score: 64
Period size: 1 Copynumber: 86.0 Consensus size: 1
106875 CTTAAGCAGA
* * * * * * * * *
106885 TTTTTTTTCTCTTTTTTCTTTGTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTCTTTTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
106950 TTTGTTGTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTT
106971 AGAAAAGAAG
Statistics
Matches: 61, Mismatches: 24, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.86
Consensus pattern (1 bp):
T
Found at i:106901 original size:9 final size:8
Alignment explanation
Indices: 106886--106970 Score: 79
Period size: 8 Copynumber: 10.8 Consensus size: 8
106876 TTAAGCAGAT
*
106886 TTTTTTTC
1 TTTTTTTG
*
106894 TCTTTTTTC
1 T-TTTTTTG
*
106903 TTTGTTT-
1 TTTTTTTG
106910 TTTTTTTG
1 TTTTTTTG
106918 TTTTTTTG
1 TTTTTTTG
106926 TTTTTTTG
1 TTTTTTTG
106934 -TTTTTT-
1 TTTTTTTG
*
106940 TTCTTTTG
1 TTTTTTTG
106948 TTTTTGTTG
1 TTTTT-TTG
106957 TTGTTTTT-
1 TT-TTTTTG
106965 TTTTTT
1 TTTTTT
106971 AGAAAAGAAG
Statistics
Matches: 67, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
7 21 0.31
8 28 0.42
9 15 0.22
10 3 0.04
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.86
Consensus pattern (8 bp):
TTTTTTTG
Found at i:106901 original size:11 final size:10
Alignment explanation
Indices: 106885--106968 Score: 80
Period size: 11 Copynumber: 7.9 Consensus size: 10
106875 CTTAAGCAGA
*
106885 TTTTTTTTCTC
1 TTTTTTTT-TG
106896 TTTTTTCTTTG
1 TTTTTT-TTTG
106907 TTTTTTTTT-
1 TTTTTTTTTG
*
106916 TGTTTTTTTG
1 TTTTTTTTTG
*
106926 TTTTTTTGTTT
1 TTTTTTT-TTG
106937 TTTTTCTTTTG
1 TTTTT-TTTTG
106948 TTTTTGTTGTTG
1 TTTTT-TT-TTG
106960 TTTTTTTTT
1 TTTTTTTTT
106969 TTAGAAAAGA
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
9 8 0.13
10 11 0.18
11 31 0.50
12 12 0.19
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.86
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:106922 original size:30 final size:30
Alignment explanation
Indices: 106888--106952 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
106878 AAGCAGATTT
106888 TTTTTCTCTTTTTTCT-TTGTTTTTT-TTTTG
1 TTTTTCTCTTTTTT-TGTT-TTTTTTCTTTTG
* *
106918 TTTTTTTGTTTTTTTGTTTTTTTTCTTTTG
1 TTTTTCTCTTTTTTTGTTTTTTTTCTTTTG
106948 TTTTT
1 TTTTT
106953 GTTGTTGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.00, C:0.06, G:0.08, T:0.86
Consensus pattern (30 bp):
TTTTTCTCTTTTTTTGTTTTTTTTCTTTTG
Found at i:106941 original size:40 final size:41
Alignment explanation
Indices: 106885--106970 Score: 122
Period size: 40 Copynumber: 2.1 Consensus size: 41
106875 CTTAAGCAGA
*
106885 TTTTTTTTCTCTTTTTTC-TTTGTTTTT-TTTTTGTTTTTT
1 TTTTTTTTCTCTTTTTTCTTTTGTTTTTGTTGTTGTTTTTT
* *
106924 TGTTTTTTTGTTTTTTTTCTTTTGTTTTTGTTGTTGTTTTTT
1 T-TTTTTTTCTCTTTTTTCTTTTGTTTTTGTTGTTGTTTTTT
106966 TTTTT
1 TTTTT
106971 AGAAAAGAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
39 1 0.02
40 15 0.37
41 13 0.32
42 12 0.29
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.86
Consensus pattern (41 bp):
TTTTTTTTCTCTTTTTTCTTTTGTTTTTGTTGTTGTTTTTT
Found at i:106963 original size:23 final size:21
Alignment explanation
Indices: 106886--106969 Score: 84
Period size: 19 Copynumber: 4.0 Consensus size: 21
106876 TTAAGCAGAT
*
106886 TTTTTTTCTCTTTTTTC-TTTG
1 TTTTTTTGT-TTTTTTCTTTTG
*
106907 TTTTTTT-TTTGTTT-TTTTG
1 TTTTTTTGTTTTTTTCTTTTG
106926 TTTTTTTGTTTTTTTTCTTTTG
1 TTTTTTTG-TTTTTTTCTTTTG
*
106948 TTTTTGTTGTTGTTTTTTTTTT
1 TTTTT-TTGTT-TTTTTCTTTT
106970 TAGAAAAGAA
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
19 16 0.30
20 1 0.02
21 13 0.24
22 12 0.22
23 12 0.22
ACGTcount: A:0.00, C:0.05, G:0.10, T:0.86
Consensus pattern (21 bp):
TTTTTTTGTTTTTTTCTTTTG
Found at i:106968 original size:30 final size:29
Alignment explanation
Indices: 106907--106970 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 29
106897 TTTTTCTTTG
*
106907 TTTTTTTTTTGTTTTTTTGTTTTTTTGTT
1 TTTTTTTTTTGTTTTTTTGTTGTTTTGTT
106936 TTTTTTCTTTTGTTTTTGTTGTTGTTTT-TT
1 TTTTTT-TTTTGTTTTT-TTGTTGTTTTGTT
106966 TTTTT
1 TTTTT
106971 AGAAAAGAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 6 0.19
30 17 0.53
31 9 0.28
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.88
Consensus pattern (29 bp):
TTTTTTTTTTGTTTTTTTGTTGTTTTGTT
Found at i:117190 original size:4 final size:4
Alignment explanation
Indices: 117181--117205 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
117171 AAAACAAAAC
117181 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
117206 CCTCAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:119609 original size:76 final size:76
Alignment explanation
Indices: 119381--119792 Score: 456
Period size: 76 Copynumber: 5.4 Consensus size: 76
119371 GATGATTCAA
* * * * *
119381 AAATAAAATCGGGATTGGAGTATCCCCGT-GAAAATAATGGGGTTGGAGTATCCCCAATTATGAA
1 AAATAAAACCGGGGTTGGAGTGTCCCC-TCGAAAATAATAGGGTTGGAGTAT-CCC-A-GATGAA
* *
119445 AAATCAATATTTTAG
62 AAATTAATGTTTTAG
* * * *
119460 AAATAAAACCGAGGTTGGAGTATCCCC-CAAAAATAAT-GGGATTGGAGTATCCCCGATGAAAAA
1 AAATAAAACCGGGGTTGGAGTGTCCCCTCGAAAATAATAGGG-TTGGAGTATCCCAGATGAAAAA
*
119523 TTGATGTTTTAG
65 TTAATGTTTTAG
*
119535 AAACAAAACCGGGGTTGGAGTGTCCCCTCGAAAATAACTAGGGTTGGAGTATCCC-GATGAAAAA
1 AAATAAAACCGGGGTTGGAGTGTCCCCTCGAAAATAA-TAGGGTTGGAGTATCCCAGATGAAAAA
*
119599 TTGATGTTTTAG
65 TTAATGTTTTAG
* ** *
119611 AAATAAAACCAGGGTTGGAGTGTCCCCTCGAAAATAACGGGGTTGGAGTATCCCTGATGAAAAAT
1 AAATAAAACCGGGGTTGGAGTGTCCCCTCGAAAATAATAGGGTTGGAGTATCCCAGATGAAAAAT
119676 TAATGTTTTAG
66 TAATGTTTTAG
* *
119687 AAATAAAACCGAGGTTGGAGTGTCCCCTC-AGAAATAATAGGGTTGGAGTATCCCCGATTGTGAA
1 AAATAAAACCGGGGTTGGAGTGTCCCCTCGA-AAATAATAGGGTTGGAGTATCCCAGA---TGAA
* * * *
119751 AAGTCAGTGTTCTAG
62 AAATTAATGTTTTAG
* * *
119766 AAATAAAATCGGAGTTGGAGTATCCCC
1 AAATAAAACCGGGGTTGGAGTGTCCCC
119793 GATTATGGAA
Statistics
Matches: 292, Mismatches: 31, Indels: 20
0.85 0.09 0.06
Matches are distributed among these distances:
75 57 0.20
76 134 0.46
77 19 0.07
78 20 0.07
79 62 0.21
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (76 bp):
AAATAAAACCGGGGTTGGAGTGTCCCCTCGAAAATAATAGGGTTGGAGTATCCCAGATGAAAAAT
TAATGTTTTAG
Found at i:119783 original size:51 final size:50
Alignment explanation
Indices: 119728--120056 Score: 285
Period size: 51 Copynumber: 6.5 Consensus size: 50
119718 AAATAATAGG
* *
119728 GTTGGAGTATCCCCGATTGTGAAAAGTCAGTGTTCTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAA-TCAGTGTTTTAGAAATAAAATCGGA
**
119779 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATCAGTGTTTTAGAAATAAAATCGGA
** * * * * *
119830 GTTGGAGTATCCTTGATTAAGAGAAAT-TGATGTTTTGGAAAT-GAA-CCGA
1 GTTGGAGTATCCCCGATTATGA-AAATCAG-TGTTTTAGAAATAAAATCGGA
* * * * * *
119879 GATTAGAGTATCCCTGATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCAGA
1 G-TTGGAGTATCCCCGATTATGAAAA-TCAGTGTTTTAGAAATAAAATCGGA
119931 GTTGGAGTATCCCCGATTATGGAAAAT-AGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAATCA-GTGTTTTAGAAATAAAATCGGA
* * * * * * *
119982 GCTAGAGTATCCCCGATTAAGAGAAA-CTGATGTTTTGGAAATGAAA-CCGA
1 GTTGGAGTATCCCCGATTATGA-AAATCAG-TGTTTTAGAAATAAAATCGGA
*
120032 GATTGGAGTATCCCCGA-GATGAAAA
1 G-TTGGAGTATCCCCGATTATGAAAA
120057 ATCTAGAAAT
Statistics
Matches: 229, Mismatches: 35, Indels: 30
0.78 0.12 0.10
Matches are distributed among these distances:
49 10 0.04
50 45 0.20
51 160 0.70
52 14 0.06
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTATGAAAATCAGTGTTTTAGAAATAAAATCGGA
Found at i:119913 original size:152 final size:153
Alignment explanation
Indices: 119732--120048 Score: 519
Period size: 152 Copynumber: 2.1 Consensus size: 153
119722 AATAGGGTTG
*
119732 GAGTATCCCCGATTGTGAAAAGTCAGTGTTCTAGAAATAAAATCGGAGTTGGAGTATCCCCGATT
1 GAGTATCCCCGATTGTGAAAAGTCAGTGTTCTAGAAATAAAATCAGAGTTGGAGTATCCCCGATT
* * * ** *
119797 ATGGAAAATGGGTGTTTTAGAAATAAAATCGGAGTTGGAGTATCCTTGATTAAGAGAAATTGATG
66 ATGGAAAATAGGTGTTTTAGAAATAAAATCGGAGCTAGAGTATCCCCGATTAAGAGAAACTGATG
119862 TTTTGGAAATG-AACCGAGATTA
131 TTTTGGAAATGAAACCGAGATTA
* * * *
119884 GAGTATCCCTGATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCAGAGTTGGAGTATCCCCGATT
1 GAGTATCCCCGATTGTGAAAAGTCAGTGTTCTAGAAATAAAATCAGAGTTGGAGTATCCCCGATT
119949 ATGGAAAATAGGTGTTTTAGAAATAAAATCGGAGCTAGAGTATCCCCGATTAAGAGAAACTGATG
66 ATGGAAAATAGGTGTTTTAGAAATAAAATCGGAGCTAGAGTATCCCCGATTAAGAGAAACTGATG
*
120014 TTTTGGAAATGAAACCGAGATTG
131 TTTTGGAAATGAAACCGAGATTA
120037 GAGTATCCCCGA
1 GAGTATCCCCGA
120049 GATGAAAAAT
Statistics
Matches: 151, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
152 130 0.86
153 21 0.14
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (153 bp):
GAGTATCCCCGATTGTGAAAAGTCAGTGTTCTAGAAATAAAATCAGAGTTGGAGTATCCCCGATT
ATGGAAAATAGGTGTTTTAGAAATAAAATCGGAGCTAGAGTATCCCCGATTAAGAGAAACTGATG
TTTTGGAAATGAAACCGAGATTA
Found at i:119965 original size:101 final size:100
Alignment explanation
Indices: 119728--120048 Score: 294
Period size: 101 Copynumber: 3.2 Consensus size: 100
119718 AAATAATAGG
** * * * *
119728 GTTGGAGTATCCCCGATTGTGA-AAAGTCAG-TGTTCTAGAAATAAAATCGGAGTTGGAGTATCC
1 GTTGGAGTATCCCCGATTAAGAGAAA-T-AGATGTTTTAGAAATAAAACCGGAGCTAGAGTATCC
* *
119791 CCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
64 CCGATTAT-GAAAAT-GGTGTTTTGGAAATAAAATCAGA
** * * * *
119830 GTTGGAGTATCCTTGATTAAGAGAAATTGATGTTTTGGAAAT-GAACC-GAGATTAGAGTATCCC
1 GTTGGAGTATCCCCGATTAAGAGAAATAGATGTTTTAGAAATAAAACCGGAG-CTAGAGTATCCC
* *
119893 TGATTGTGAAAAGTCGGTGTTTTGGAAATAAAATCAGA
65 CGATTATGAAAA-T-GGTGTTTTGGAAATAAAATCAGA
* * *
119931 GTTGGAGTATCCCCGATTATG-GAAAATAGGTGTTTTAGAAATAAAATCGGAGCTAGAGTATCCC
1 GTTGGAGTATCCCCGATTAAGAG-AAATAGATGTTTTAGAAATAAAACCGGAGCTAGAGTATCCC
* * * *
119995 CGATTAAGAGAAACTGATGTTTTGGAAATGAAA-CCGA
65 CGATTATGA-AAA-TGGTGTTTTGGAAATAAAATCAGA
120032 GATTGGAGTATCCCCGA
1 G-TTGGAGTATCCCCGA
120049 GATGAAAAAT
Statistics
Matches: 179, Mismatches: 31, Indels: 18
0.79 0.14 0.08
Matches are distributed among these distances:
100 9 0.05
101 80 0.45
102 80 0.45
103 10 0.06
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.29
Consensus pattern (100 bp):
GTTGGAGTATCCCCGATTAAGAGAAATAGATGTTTTAGAAATAAAACCGGAGCTAGAGTATCCCC
GATTATGAAAATGGTGTTTTGGAAATAAAATCAGA
Found at i:123052 original size:13 final size:13
Alignment explanation
Indices: 123034--123059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
123024 ACAAAGATTG
123034 ATGTATCGATACA
1 ATGTATCGATACA
123047 ATGTATCGATACA
1 ATGTATCGATACA
123060 TCCTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:126651 original size:31 final size:31
Alignment explanation
Indices: 126613--126699 Score: 111
Period size: 31 Copynumber: 2.8 Consensus size: 31
126603 CCAAAACCAG
* *
126613 CAGCTCGAGCTTCTTCCAGCTTCCATGTCAA
1 CAGCTCGAGCCTCTTCCAGCTTCCATGGCAA
** *
126644 CAGCTCGAGCCTCTTTTAGCTTCCATGGCAG
1 CAGCTCGAGCCTCTTCCAGCTTCCATGGCAA
* *
126675 TAGCTTGAGCCTCTTCCAGCTTCCA
1 CAGCTCGAGCCTCTTCCAGCTTCCA
126700 CGTGCACAGT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.17, C:0.34, G:0.18, T:0.30
Consensus pattern (31 bp):
CAGCTCGAGCCTCTTCCAGCTTCCATGGCAA
Found at i:127633 original size:8 final size:8
Alignment explanation
Indices: 127607--127658 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
127597 AAGGTATAAA
127607 AATAAAAT
1 AATAAAAT
**
127615 TTTAAAA-
1 AATAAAAT
*
127622 AATATAAT
1 AATAAAAT
127630 AATAAAAT
1 AATAAAAT
127638 AATAACAA-
1 AATAA-AAT
127646 AATAAAAT
1 AATAAAAT
127654 AATAA
1 AATAA
127659 TAAAAATTCT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
7 6 0.17
8 27 0.77
9 2 0.06
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (8 bp):
AATAAAAT
Found at i:127641 original size:16 final size:16
Alignment explanation
Indices: 127630--127663 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
127620 AAAATATAAT
127630 AATAAAATAATAACAA
1 AATAAAATAATAACAA
*
127646 AATAAAATAATAATAA
1 AATAAAATAATAACAA
127662 AA
1 AA
127664 ATTCTTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
AATAAAATAATAACAA
Found at i:127663 original size:11 final size:11
Alignment explanation
Indices: 127602--127661 Score: 50
Period size: 11 Copynumber: 5.4 Consensus size: 11
127592 CCATTAAGGT
*
127602 ATAAAAATAAA
1 ATAATAATAAA
** *
127613 ATTTTAAAAAA
1 ATAATAATAAA
127624 TATAATAATAAA
1 -ATAATAATAAA
*
127636 ATAATAACAAA
1 ATAATAATAAA
127647 ATAA-AATAATA
1 ATAATAATAA-A
127658 ATAA
1 ATAA
127662 AAATTCTTTT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
10 4 0.11
11 26 0.68
12 8 0.21
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.27
Consensus pattern (11 bp):
ATAATAATAAA
Found at i:132150 original size:22 final size:23
Alignment explanation
Indices: 132107--132150 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 23
132097 TATTCATGGA
*
132107 ATTCATTCAACATTTTCATAATC
1 ATTCATTCAACATTTGCATAATC
* *
132130 ATTCA-TCAATATTTGCTTAAT
1 ATTCATTCAACATTTGCATAAT
132151 TACTAAGAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.34, C:0.18, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTCATTCAACATTTGCATAATC
Found at i:137435 original size:414 final size:414
Alignment explanation
Indices: 136665--137495 Score: 1554
Period size: 414 Copynumber: 2.0 Consensus size: 414
136655 CCCAAAGAGA
136665 TGGAAGTATATGTTGATGACATGATTGCCAAGTCTCCTAATGAAGAAAGTCACGTGGCAAATCCT
1 TGGAAGTATATGTTGATGACATGATTGCCAAGTCTCCTAATGAAGAAAGTCACGTGGCAAATCCT
*
136730 CGAAAGTTATTTGAAAGACTAAGGAAATACCAGTTGTAGTTGAACCCAACAAAATGTACATTTGG
66 CGAAAGTTATTTGAAAGACTAAGGAAATACCAGTTGTAGTTGAACCCAACAAAATGTAAATTTGG
* * * *
136795 AGCAAGATCAGAGAAATTATTGGCTTTTGTCGTAAGCAAGAAAGGGATTGAGGTTGATCACGACA
131 AGCAAGATCAAAGAAATTATTGGCTTTTGTCGTAAGCAAGAAAAGGATCGAGGTTGATCACAACA
136860 AGATCAAGGCCATTTAGAGGTTACCGCCCCCTCGAACCCAAAAAGAAGTAAGAAGTTTCCTTGAA
196 AGATCAAGGCCATTTAGAGGTTACCGCCCCCTCGAACCCAAAAAGAAGTAAGAAGTTTCCTTGAA
136925 AGATTGAATTACATTGCCCGCTTTATTTCTCATCTTACGGACAAATGTGATCCAATCTTTCACCT
261 AGATTGAATTACATTGCCCGCTTTATTTCTCATCTTACGGACAAATGTGATCCAATCTTTCACCT
136990 CTTTTGAAAACATAATCCGTGGGAATGGGATGAAGAGTGCCAGAACGCCTTTGAAAAGGTTAAAC
326 CTTTTGAAAACATAATCCGTGGGAATGGGATGAAGAGTGCCAGAACGCCTTTGAAAAGGTTAAAC
*
137055 AATATCTCTCCAACCTGCTAGTAT
391 AATATCTCTCCAACCCGCTAGTAT
*
137079 TGGAAGTATATGTTGATGACATGATTGCCAAGTCTCCTAATGAAGAAAGTCATGTGGCAAATCCT
1 TGGAAGTATATGTTGATGACATGATTGCCAAGTCTCCTAATGAAGAAAGTCACGTGGCAAATCCT
*
137144 CGAAAGTTATTTGAAAGACTAAGGAAATACTAGTTGTAGTTGAACCCAACAAAATGTAAATTTGG
66 CGAAAGTTATTTGAAAGACTAAGGAAATACCAGTTGTAGTTGAACCCAACAAAATGTAAATTTGG
* *
137209 AGCAAGATCAAAGAAATTATTGGGTTTTGTCGTAAGCAAGAAAAGGATCGAGGTTGATCTCAACA
131 AGCAAGATCAAAGAAATTATTGGCTTTTGTCGTAAGCAAGAAAAGGATCGAGGTTGATCACAACA
137274 AGATCAAGGCCATTTAGAGGTTACCGCCCCCTCGAACCCAAAAAGAAGTAAGAAGTTTCCTTGAA
196 AGATCAAGGCCATTTAGAGGTTACCGCCCCCTCGAACCCAAAAAGAAGTAAGAAGTTTCCTTGAA
* *
137339 AGATTGAGTTACATTGCCCGCTTTATTTCTCATCTTATGGACAAATGTGATCCAATCTTTCACCT
261 AGATTGAATTACATTGCCCGCTTTATTTCTCATCTTACGGACAAATGTGATCCAATCTTTCACCT
137404 CTTTTGAAAACATAATCCGTGGGAATGGGATGAAGAGTGCCAGAACGCCTTTGAAAAGGTTAAAC
326 CTTTTGAAAACATAATCCGTGGGAATGGGATGAAGAGTGCCAGAACGCCTTTGAAAAGGTTAAAC
137469 AATATCTCTCCAACCCGCTAGTAT
391 AATATCTCTCCAACCCGCTAGTAT
137493 TGG
1 TGG
137496 TACCACCTAC
Statistics
Matches: 405, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
414 405 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (414 bp):
TGGAAGTATATGTTGATGACATGATTGCCAAGTCTCCTAATGAAGAAAGTCACGTGGCAAATCCT
CGAAAGTTATTTGAAAGACTAAGGAAATACCAGTTGTAGTTGAACCCAACAAAATGTAAATTTGG
AGCAAGATCAAAGAAATTATTGGCTTTTGTCGTAAGCAAGAAAAGGATCGAGGTTGATCACAACA
AGATCAAGGCCATTTAGAGGTTACCGCCCCCTCGAACCCAAAAAGAAGTAAGAAGTTTCCTTGAA
AGATTGAATTACATTGCCCGCTTTATTTCTCATCTTACGGACAAATGTGATCCAATCTTTCACCT
CTTTTGAAAACATAATCCGTGGGAATGGGATGAAGAGTGCCAGAACGCCTTTGAAAAGGTTAAAC
AATATCTCTCCAACCCGCTAGTAT
Found at i:140819 original size:42 final size:42
Alignment explanation
Indices: 140759--142166 Score: 1266
Period size: 42 Copynumber: 33.6 Consensus size: 42
140749 TAAAGACTTT
* * * *
140759 CCTGTCGGCTTTCACCCTAGAGACTTTTCTTCCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* ** * * * *
140801 CCTATCGATTTTGACCCTAGAGACTTTCCTTCTCTTAGTTTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * ** * * * * *
140843 TCTATTGATTTTAACCTTGGAAACTTTCCTTTCCTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
140885 CTTATCGGCTTTGACCTTGGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
140927 CCTGTCGGCTTTCACCCTGAAGACTTTTCTTCCCTAAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
140969 CCTATCCGCTTTGACCCTAGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
141011 CCTATCGACTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
141053 CGTGTCAGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
141095 CCTGTCGACTTTGACCTTGGAGACTTTCCTTCCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * **
141137 CCTGTCGGCTTCGACCTTTAAGACTTTCCTTCCCTTAGTCT-
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
141178 ACTGTCGACTTTGACCCTTGAGACTTTCCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
141220 CCTATCGACTTTCACCCTAGAGACTTTTCTTCCTTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
141262 CTTGTCTGCTTTGACCCTAGAGACTTTCTTTCCCTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
141304 CCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
141346 CCTGTCGGCTTTGACCCTAGAGACTTTCCTTTCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
141388 CTTGTCGGCTTTGACCCTAGAGACTTTTCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
141430 CTTATCGGCTTTGACCTTGGAGACTTTCCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
141472 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAATCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * ** *
141514 CCTGTCGGCTTTGACCTTGAAGACTTTCCAACCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
141556 CCTATCAGCTTTGACCCTGGAGATTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *** *
141598 CTTATTAACTTTGACCCTGGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
141640 CTTGTCGGCTTTGACCTTGGAGACTTTCCTTCCCTCAGTCT-
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
141681 ACTCGTCGGC-TGGACCTTGGAGACTTTTCTGCCCTTAGTTTT
1 CCT-GTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * *
141723 CCTGTTAGCTTTGACCTTAGAGACTTTTCTACCCTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * *
141765 CCTGTTAGCTTTGACCTTGGAGACTTTTCTACCTTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
141807 CCTATCGG-TCTTGACCCTGGAGACTTT-TTTATCCTCAGTCTA
1 CCTGTCGGCT-TTGACCCTGGAGACTTTCCTT-CCCTTAGTCTG
* * *
141849 CCTGTCGGCTTTGATCCTGGGGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * *
141891 ATTGTCGGCTTTGACCTTGGAGACTTTTCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * *
141933 CCTGTCGGCTTTTACCTTAGAGACTTT-CTTATCTTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTT-CCCTTAGTCTG
* * * *
141975 CCTGTCGGCTTTGACCCTAGAGACTTTCCTTCCCTCAGTTTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * * * * *
142017 CCCATCGGC-TGGACCTTGGTGACTTTTCTACCTTTAATCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* ** * * * *
142058 CTTGTTAGCTTTGACCCTGGAGACTTTTCTACCTTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
142100 CTTATC-GATCTTGACCCTGGAGACTTTTCTACCATCAGTCTG
1 CCTGTCGGCT-TTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
142142 CCTGTCGGCTTTGACCTTGAAGACT
1 CCTGTCGGCTTTGACCCTGGAGACT
142167 GCCTCATCTA
Statistics
Matches: 1134, Mismatches: 219, Indels: 26
0.82 0.16 0.02
Matches are distributed among these distances:
41 100 0.09
42 1026 0.90
43 8 0.01
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.39
Consensus pattern (42 bp):
CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
Found at i:142868 original size:31 final size:31
Alignment explanation
Indices: 142830--142893 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
142820 CATGCAAGGT
*
142830 AATGTAGCATGCAATCATGGGAGACACATGC
1 AATGTAGCATGCAATCATGGGAGACACAAGC
*
142861 AATGTAGCATGCAATCATGGGGGACACAAGC
1 AATGTAGCATGCAATCATGGGAGACACAAGC
142892 AA
1 AA
142894 ACAGAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.17
Consensus pattern (31 bp):
AATGTAGCATGCAATCATGGGAGACACAAGC
Found at i:143490 original size:31 final size:30
Alignment explanation
Indices: 143438--143526 Score: 115
Period size: 31 Copynumber: 2.9 Consensus size: 30
143428 CCGAAACCAA
* * *
143438 CAGCTTGAGCTTCTTCTAGCTTCCACACTAG
1 CAGCTCGAGCCTCTTCCAGCTTCCACA-TAG
*
143469 TAGCTCGAGCCTCTTCCAGCTTCCACGATAG
1 CAGCTCGAGCCTCTTCCAGCTTCCAC-ATAG
*
143500 CAGCTCGAGCCTCTTCCAGCTTTCACA
1 CAGCTCGAGCCTCTTCCAGCTTCCACA
143527 AACACAGCAG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
30 1 0.02
31 49 0.96
32 1 0.02
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (30 bp):
CAGCTCGAGCCTCTTCCAGCTTCCACATAG
Found at i:144469 original size:13 final size:13
Alignment explanation
Indices: 144445--144489 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
144435 AAGTAAAATT
144445 TAAAAAAT-ATAA
1 TAAAAAATAATAA
144457 TAAAAAATAATAA
1 TAAAAAATAATAA
*
144470 CAAAATAA-AATAA
1 TAAAA-AATAATAA
144483 TAAAAAA
1 TAAAAAA
144490 ATTCTTTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 10 0.34
13 17 0.59
14 2 0.07
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (13 bp):
TAAAAAATAATAA
Found at i:144481 original size:16 final size:16
Alignment explanation
Indices: 144460--144491 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
144450 AATATAATAA
*
144460 AAAATAATAACAAAAT
1 AAAATAATAAAAAAAT
144476 AAAATAATAAAAAAAT
1 AAAATAATAAAAAAAT
144492 TCTTTTCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAATAAAAAAAT
Found at i:157628 original size:52 final size:52
Alignment explanation
Indices: 157543--157667 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
157533 ATATGAAAAG
* *
157543 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
157595 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
157647 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
157668 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:157680 original size:52 final size:51
Alignment explanation
Indices: 157543--157687 Score: 211
Period size: 52 Copynumber: 2.8 Consensus size: 51
157533 ATATGAAAAG
*
157543 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
* *
157595 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAAT
*
157647 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
157688 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (51 bp):
TTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAAT
Found at i:157694 original size:13 final size:13
Alignment explanation
Indices: 157676--157700 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
157666 CAAAGATCAG
157676 TGTATCGATACAA
1 TGTATCGATACAA
157689 TGTATCGATACA
1 TGTATCGATACA
157701 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:157784 original size:13 final size:13
Alignment explanation
Indices: 157766--157790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
157756 CAAAAAAATA
157766 TGTATCGATACAT
1 TGTATCGATACAT
157779 TGTATCGATACA
1 TGTATCGATACA
157791 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:157786 original size:33 final size:33
Alignment explanation
Indices: 157744--157810 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
157734 AGTAGCTTAA
157744 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
157777 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
157810 A
1 A
157811 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:165624 original size:42 final size:42
Alignment explanation
Indices: 165564--166971 Score: 1203
Period size: 42 Copynumber: 33.6 Consensus size: 42
165554 TAAAGACTTT
* * * *
165564 CCTGTCGGCTTTCACCCTAGAGACTTTTCTTCCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* ** * * * *
165606 CCTATCGATTTTGACCCTAGAGACTTTCCTTCTCTTAGTTTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * ** * * * * *
165648 TCTATTGATTTTAACCTTGGAAACTTTCCTTTCCTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
165690 CTTATCGGCTTTGACCTTGGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
165732 CCTGTCGGCTTTCACCCTGAAGACTTTTCTTCCCTAAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
165774 CCTATCCGCTTTGACCCTAGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
165816 CCTATCGACTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
165858 CGTGTCAGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
165900 CCTGTCGACTTTGACCTTGGAGACTTTCCTTCCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * **
165942 CCTGTCAGCTTCGACCTTTAAGACTTTCCTTCCCTTAGTCT-
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
165983 ACTGTCGACTTTGACCCTTGAGACTTTCCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
166025 CCTATCGACTTTCACCCTAGAGACTTTTCTTCCTTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
166067 CTTGTCTGCTTTGACCCTAGAGACTTTCTTTCCCTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
166109 CCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
166151 CCTGTCGGCTTTGACCCTAGAGACTTTCCTTTCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
166193 CTTGTCGGCTTTGACCCTAGAGACTTTTCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
166235 CTTATCGGCTTTGACCTTGGAGACTTTCCTTCCCTTAGTCAG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
166277 ACTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAATCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * ** *
166319 CCTGTCGGCTTTGACCTTGAAGACTTTCCAACCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
166361 CCTTTCAGCTTTGACCCTGGAGATTTTCCTTTCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *** *
166403 CTTATTAACTTTGACCCTGGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
166445 CTTGTCGGCTTTGACCTTGGAGACTTTCCTTCCCTCAGTCT-
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
166486 ACTCGTCGGC-TGGACCTTGGAGACTTTTCTGCCCTTAGTTTT
1 CCT-GTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * *
166528 CCTGTTAGCTTTGACCTTAGAGACTTTTCTACCCTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * * *
166570 CCTGTTAGCTTTAACCTTGGAGACTTTTCTACCTTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
166612 CCTATCGG-TCTTGACCCTGGAGACTTT-TTTATCCTCAGTCTA
1 CCTGTCGGCT-TTGACCCTGGAGACTTTCCTT-CCCTTAGTCTG
* * *
166654 CCTGTCGGCTTTGATCCTGGGGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * *
166696 ATTGTCGGCTTTGACCTTGGAGACTTTTCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * *
166738 CCTGTCGGCTTTTACCTTAGAGACTTT-CTTATCTTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTT-CCCTTAGTCTG
* * * * *
166780 CTTATCGGCTTTGACCCTAGAGACTTTCCTTCCCTCAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * * * * * *
166822 CCCATCGGC-TGGACCTTGGTGAATTTTCTACCTTTAATCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* ** * * * *
166863 CTTGTTAGCTTTGACCCTGGAGACTTTTCTACCTTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
166905 CTTATC-GATCTTGACCCTGGAGACTTTTCTACCATCAGTCTG
1 CCTGTCGGCT-TTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
166947 CCTGTCGGCTTTGACCTTGAAGACT
1 CCTGTCGGCTTTGACCCTGGAGACT
166972 GCCTCATCTA
Statistics
Matches: 1119, Mismatches: 234, Indels: 26
0.81 0.17 0.02
Matches are distributed among these distances:
41 99 0.09
42 1012 0.90
43 8 0.01
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.39
Consensus pattern (42 bp):
CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
Found at i:167677 original size:31 final size:31
Alignment explanation
Indices: 167639--167702 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
167629 CATGCAAGGT
*
167639 AATGTAGCATGCAATCATGGGAGACACATGC
1 AATGTAGCATGCAATCATGGGAGACACAAGC
*
167670 AATGTAGCATGCAATCATGGGGGACACAAGC
1 AATGTAGCATGCAATCATGGGAGACACAAGC
167701 AA
1 AA
167703 ACAGAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.17
Consensus pattern (31 bp):
AATGTAGCATGCAATCATGGGAGACACAAGC
Found at i:168293 original size:31 final size:30
Alignment explanation
Indices: 168247--168335 Score: 124
Period size: 31 Copynumber: 2.9 Consensus size: 30
168237 CCGAAACCAA
* *
168247 CAGCTTGAGCTTCTTCTAGCTTCCACACTAG
1 CAGCTCGAGCCTCTTCTAGCTTCCACA-TAG
*
168278 CAGCTCGAGCCTCTTCCAGCTTCCACGATAG
1 CAGCTCGAGCCTCTTCTAGCTTCCAC-ATAG
*
168309 CAGCTCGAGCCTCTTCTAGCTTTCACA
1 CAGCTCGAGCCTCTTCTAGCTTCCACA
168336 AACACAGCAG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
30 1 0.02
31 50 0.96
32 1 0.02
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (30 bp):
CAGCTCGAGCCTCTTCTAGCTTCCACATAG
Found at i:169272 original size:13 final size:13
Alignment explanation
Indices: 169254--169301 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
169244 AAGTAAAATT
169254 TAAAAAAATATAA
1 TAAAAAAATATAA
169267 T-AAAAAATAATAA
1 TAAAAAAAT-ATAA
*
169280 CAAAATAAA-ATAA
1 TAAAA-AAATATAA
169293 TAAAAAAAT
1 TAAAAAAAT
169302 TCTTTTCATC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 10 0.34
13 13 0.45
14 3 0.10
15 3 0.10
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (13 bp):
TAAAAAAATATAA
Found at i:169291 original size:16 final size:16
Alignment explanation
Indices: 169270--169301 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
169260 AATATAATAA
*
169270 AAAATAATAACAAAAT
1 AAAATAATAAAAAAAT
169286 AAAATAATAAAAAAAT
1 AAAATAATAAAAAAAT
169302 TCTTTTCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAATAATAAAAAAAT
Found at i:177686 original size:1 final size:1
Alignment explanation
Indices: 177680--177709 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
177670 TTCTTCTTTC
*
177680 TTTTTTTTTTTTTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
177710 GATTCGTTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:185290 original size:42 final size:42
Alignment explanation
Indices: 185230--186637 Score: 1194
Period size: 42 Copynumber: 33.6 Consensus size: 42
185220 TAAAGACTTT
* * * *
185230 CCTGTCGGCTTTCACCCTAGAGACTTTTCTTCCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* ** * * * *
185272 CCTATCGATTTTGACCCTAGAGACTTTCCTTCTCTTAGTTTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * ** * * * * *
185314 TCTATTGATTTTAACCTTGGAAACTTTCCTTTCCTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
185356 CTTATCGGCTTTGACCTTGGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
185398 CCTGTCGGCTTTCACCCTGAAGACTTTTCTTCCCTAAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
185440 CCTATCCGCTTTGACCCTAGAGACTTTCGTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
185482 CCTATCGACTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
185524 CGTGTCAGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
185566 CCTGTCGACTTTGACCTTGGAGACTTTCCTTCCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * **
185608 CCTGTCAGCTTCGACCTTTAAGACTTTCCTTCCCTTAGTCT-
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
185649 ACTGTCGACTTTGACCCTTGAGACTTTCCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
185691 CCTATCGACTTTCACCCTAGAGACTTTTCTTCCTTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
185733 CTTGTCTGCTTTGACCCTAGAGACTTTCTTTCCCTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
185775 CCTGTCGGCTTTGACCCTAGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
185817 CCTGTCGGCTTTGACCCTAGAGACTTTCCTTTCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
185859 CTTGTCGGCTTTGACCCTAGAGACTTTTCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * *
185901 CTTATCGGCTTTGACCTTGGAGACTTTCCTTCCCTTAGTCAG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
185943 ACTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAATCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * ** *
185985 CCTGTCGGCTTTGACCTTGAAGACTTTCCAACCCTTAGTCTT
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
186027 CCTTTCAGCTTTGACCCTGGAGATTTTCCTTTCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *** *
186069 CTTATTAACTTTGACCCTGGAGACTTTCCTACCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * *
186111 CTTGTCGGCTTTGACCTTGGAGACTTTCCTTCCCTCAGTCT-
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
186152 ACTCGTCGGC-TGGACCTTGGAGACTTTTCTGCCCTTAGTTTT
1 CCT-GTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * *
186194 CCTGTTAGCTTTGACCTTAGAGACTTTTCTACCCTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * * *
186236 CCTGTTAGCTTTAACCTTGGAGACTTTTCTACCTTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * *
186278 CCTATCGG-TCTTGACCCTGGAGACTTT-TTTATCCTCAGTCTA
1 CCTGTCGGCT-TTGACCCTGGAGACTTTCCTT-CCCTTAGTCTG
* * *
186320 CCTGTCGGCTTTGATCCTGGGGACTTTCCTTCCCTTAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * *
186362 ATTGTCGGCTTTGACCTTGGAGACTTTTCTTCCCTTAGTCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * *
186404 CCTGTCGGCTTTTACCTTAGAGACTTT-CTTATCTTTAGTTTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTT-CCCTTAGTCTG
* * * * *
186446 CTTATCGGCTTTGACCCTAGAGACTTTCCTTCCCTCAGTCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
** * * * * * * * * *
186488 CCCATCGGC-TGGACCTTGGTGAATTTTCTACCTTTAATCTA
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* ** * * * *
186529 CTTGTTAGCTTTGACCCTGGAGACTTTTCTACCTTTAGCCTG
1 CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* * * * * * *
186571 CTTATC-GATCTTGACCCTGGAGACTTTTCTACCATCAGTCTG
1 CCTGTCGGCT-TTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
* *
186613 CCTGTCGGCTTTGACCTTGAAGACT
1 CCTGTCGGCTTTGACCCTGGAGACT
186638 GCCTCATCTA
Statistics
Matches: 1117, Mismatches: 236, Indels: 26
0.81 0.17 0.02
Matches are distributed among these distances:
41 99 0.09
42 1010 0.90
43 8 0.01
ACGTcount: A:0.15, C:0.29, G:0.17, T:0.39
Consensus pattern (42 bp):
CCTGTCGGCTTTGACCCTGGAGACTTTCCTTCCCTTAGTCTG
Found at i:187343 original size:31 final size:31
Alignment explanation
Indices: 187305--187368 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
187295 CATGCAAGGT
*
187305 AATGTAGCATGCAATCATGGGAGACACATGC
1 AATGTAGCATGCAATCATGGGAGACACAAGC
*
187336 AATGTAGCATGCAATCATGGGGGACACAAGC
1 AATGTAGCATGCAATCATGGGAGACACAAGC
187367 AA
1 AA
187369 ACAGAAAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.17
Consensus pattern (31 bp):
AATGTAGCATGCAATCATGGGAGACACAAGC
Done.