Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold16
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5287347
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 8769 characters in sequence are not A, C, G, or T
File 15 of 35
Found at i:2256036 original size:19 final size:19
Alignment explanation
Indices: 2256012--2256049 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
2256002 TTAAAATTTT
2256012 TTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTCAA
2256031 TTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTCAA
2256050 ACACTTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.11, C:0.05, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTTCAA
Found at i:2256780 original size:165 final size:164
Alignment explanation
Indices: 2256573--2257525 Score: 1531
Period size: 165 Copynumber: 5.8 Consensus size: 164
2256563 ATAAATTGTA
* * * * *
2256573 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
* * * * * *
2256638 TGAGGA-TTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGTGTCCTGCTCTTTGGGGAATG
65 TGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
2256702 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
129 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2256738 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCTT
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
2256803 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGA
65 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGA
2256868 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
130 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2256903 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGTTCTT
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
2256968 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGA
65 TGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGA
2257033 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
130 AAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* *
2257068 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCT
* *
2257132 TTAAGGACTGGACAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
64 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
2257197 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
129 AAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
* * *
2257233 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCG
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCT
2257297 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
64 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-
* *
2257362 GAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
128 GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
*
2257398 TCCTTCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
* *
2257463 TGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGGGGACT
65 TGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGACT
2257526 AAAAAGCGGA
Statistics
Matches: 751, Mismatches: 28, Indels: 18
0.94 0.04 0.02
Matches are distributed among these distances:
164 12 0.02
165 720 0.96
166 19 0.03
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (164 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT
GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAA
AGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
Found at i:2257033 original size:26 final size:26
Alignment explanation
Indices: 2257004--2257093 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
2256994 GTGTGGGCTT
2257004 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
2257030 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
* *
2257057 TTTAAGAGGTGTCCTGCTCTTTGGGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
2257085 TGAAAGGTG
1 TGAAAGGTG
2257094 CCACCAACTT
Statistics
Matches: 47, Mismatches: 12, Indels: 10
0.68 0.17 0.14
Matches are distributed among these distances:
25 3 0.06
26 17 0.36
27 8 0.17
28 8 0.17
29 8 0.17
30 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:2257257 original size:26 final size:26
Alignment explanation
Indices: 2257169--2257258 Score: 76
Period size: 26 Copynumber: 3.3 Consensus size: 26
2257159 GTGTGGGCTT
*
2257169 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGGGGAC
** *
2257195 TGAAAGGTG-CCACCAACTTGTGTGGG-C
1 TGAAAGGTGTCCTGC-TCTT-TG-GGGAC
*
2257222 TTTAAGAGGTGTCCTGCTCTTTGGGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGGGGAC
2257250 TGAAAGGTG
1 TGAAAGGTG
2257259 CCACCAACTT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
25 3 0.06
26 17 0.35
27 9 0.19
28 8 0.17
29 8 0.17
30 3 0.06
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGGGGAC
Found at i:2257525 original size:55 final size:54
Alignment explanation
Indices: 2256573--2257525 Score: 1391
Period size: 55 Copynumber: 17.3 Consensus size: 54
2256563 ATAAATTGTA
* * * * *
2256573 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
2256628 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCCACTTGTGTGGGCTTTGAAAAGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
2256683 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
2256738 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
2256793 TCCTGTTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
2256848 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
2256903 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
2256958 TCCTGTTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
2257013 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
2257068 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
2257123 TCCTGCTCTTTAAGGACTGGACAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GA-AAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
2257178 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
2257233 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
2257288 TCCTGCTCGTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
2257343 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
2257398 TCCTTCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
2257453 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
2257508 TCCTGCTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
2257526 AAAAAGCGGA
Statistics
Matches: 842, Mismatches: 36, Indels: 40
0.92 0.04 0.04
Matches are distributed among these distances:
53 2 0.00
54 27 0.03
55 789 0.94
56 22 0.03
57 2 0.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:2258511 original size:1 final size:1
Alignment explanation
Indices: 2258507--2258555 Score: 53
Period size: 1 Copynumber: 49.0 Consensus size: 1
2258497 CTTTTCTCTC
* * * * *
2258507 TTTTTCTTTGTTTTGTTTTTTTTGTTTTTTTTTTCTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2258556 GAAGAGAAGG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (1 bp):
T
Found at i:2258555 original size:15 final size:15
Alignment explanation
Indices: 2258507--2258554 Score: 73
Period size: 14 Copynumber: 3.3 Consensus size: 15
2258497 CTTTTCTCTC
*
2258507 TTTTTCTTTGTTTTG
1 TTTTTCTTTGTTTTT
2258522 TTTTT-TTTGTTTTT
1 TTTTTCTTTGTTTTT
2258536 TTTTTCTTT-TTTTT
1 TTTTTCTTTGTTTTT
2258550 TTTTT
1 TTTTT
2258555 TGAAGAGAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
14 23 0.74
15 8 0.26
ACGTcount: A:0.00, C:0.04, G:0.06, T:0.90
Consensus pattern (15 bp):
TTTTTCTTTGTTTTT
Found at i:2271063 original size:76 final size:78
Alignment explanation
Indices: 2270962--2271165 Score: 227
Period size: 76 Copynumber: 2.6 Consensus size: 78
2270952 GAGATAATAA
* * * * *
2270962 CGGGGTTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATG
1 CGGGGTTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-
*
2271026 A-TT-AGAA-AAAAT
64 ATTTGAGAATAAAAC
* **
2271038 CGGGATTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCTAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATA-
* *
2271103 TTTGGGAATAAAGC
65 TTTGAGAATAAAAC
* * *
2271117 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
2271166 GAAATAACGA
Statistics
Matches: 106, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
75 7 0.07
76 48 0.45
77 2 0.02
78 3 0.03
79 46 0.43
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.25
Consensus pattern (78 bp):
CGGGGTTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTGAGAATAAAAC
Found at i:2271074 original size:28 final size:28
Alignment explanation
Indices: 2271030--2271083 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
2271020 TCGATGATTA
2271030 GAAAAAATCGGGATTGGAGTATCCCTTC
1 GAAAAAATCGGGATTGGAGTATCCCTTC
*
2271058 GAAAATAA-CGGGGTTGGAGTATCCCT
1 GAAAA-AATCGGGATTGGAGTATCCCT
2271084 AATTATGAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 22 0.92
29 2 0.08
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (28 bp):
GAAAAAATCGGGATTGGAGTATCCCTTC
Found at i:2271157 original size:28 final size:28
Alignment explanation
Indices: 2271117--2271188 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
2271107 GGAATAAAGC
** *
2271117 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2271145 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
2271173 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
2271189 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:2271246 original size:52 final size:50
Alignment explanation
Indices: 2271177--2271346 Score: 182
Period size: 52 Copynumber: 3.3 Consensus size: 50
2271167 AAATAACGAG
* * *
2271177 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGT-GTTTT-GAAATAAAACCGGA
** * *
2271229 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTG-AAATAAAACC-GGA
*
2271282 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTT-AACGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTGAA--ATAAAACCGGA
2271333 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
2271347 TCGAAAATAA
Statistics
Matches: 99, Mismatches: 12, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
50 2 0.02
51 4 0.04
52 81 0.82
53 12 0.12
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.29
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGAAATAAAACCGGA
Found at i:2271365 original size:28 final size:28
Alignment explanation
Indices: 2271320--2271401 Score: 98
Period size: 27 Copynumber: 3.0 Consensus size: 28
2271310 AGTGTTTTAA
* *
2271320 CGATAAA-ACCGGAGTTGGAGTATCCCC
1 CGATAAATAACGGGGTTGGAGTATCCCC
2271347 TCGA-AAATAACGGGGTTGGAGTAT-CCC
1 -CGATAAATAACGGGGTTGGAGTATCCCC
* *
2271374 CGATGATTAACGGGGTTGGAGTATCCCC
1 CGATAAATAACGGGGTTGGAGTATCCCC
2271402 GATTGTGAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
26 3 0.06
27 24 0.51
28 20 0.43
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (28 bp):
CGATAAATAACGGGGTTGGAGTATCCCC
Found at i:2273846 original size:13 final size:13
Alignment explanation
Indices: 2273828--2273853 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2273818 ACAAAGATCC
2273828 ATGTATCGATACA
1 ATGTATCGATACA
2273841 ATGTATCGATACA
1 ATGTATCGATACA
2273854 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2273849 original size:33 final size:33
Alignment explanation
Indices: 2273807--2273873 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2273797 AAAATTTCCA
***
2273807 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2273840 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2273873 A
1 A
2273874 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2273917 original size:19 final size:18
Alignment explanation
Indices: 2273893--2273960 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
2273883 CAGTAGCTAA
2273893 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2273912 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2273927 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
2273944 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2273961 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2273933 original size:13 final size:13
Alignment explanation
Indices: 2273915--2273939 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2273905 ACAATACTTA
2273915 TGTATCGATACAT
1 TGTATCGATACAT
2273928 TGTATCGATACA
1 TGTATCGATACA
2273940 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2273937 original size:32 final size:32
Alignment explanation
Indices: 2273896--2273958 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
2273886 TAGCTAATTA
*
2273896 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
2273928 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
2273959 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:2274040 original size:21 final size:21
Alignment explanation
Indices: 2274016--2274072 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
2274006 CATTTGTAGG
2274016 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
2274037 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
2274058 ATGTATCGATACATT
1 ATGTATCGATACATT
2274073 TAAAAATTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:2274101 original size:19 final size:19
Alignment explanation
Indices: 2274077--2274113 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
2274067 TACATTTAAA
2274077 AATTTTTTTTTTTTTTTTC
1 AATTTTTTTTTTTTTTTTC
2274096 AATTTTTTTTTTTTTTTT
1 AATTTTTTTTTTTTTTTT
2274114 TCAAACACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (19 bp):
AATTTTTTTTTTTTTTTTC
Found at i:2274104 original size:20 final size:20
Alignment explanation
Indices: 2274079--2274117 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
2274069 CATTTAAAAA
2274079 TTTTTTTTTTTTTTTTCAAT
1 TTTTTTTTTTTTTTTTCAAT
2274099 TTTTTTTTTTTTTTTTCAA
1 TTTTTTTTTTTTTTTTCAA
2274118 ACACTTTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.05, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTTCAAT
Found at i:2274295 original size:20 final size:21
Alignment explanation
Indices: 2274246--2274302 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
2274236 GAGGTGTCTA
*
2274246 CAACATGTATCGATACATCTT
1 CAACATGTATCGATACATCTG
***
2274267 TTTCATGTATCGATACAT-TG
1 CAACATGTATCGATACATCTG
2274287 CAACATGTATCGATAC
1 CAACATGTATCGATAC
2274303 TTTGAATTGT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 14 0.48
21 15 0.52
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (21 bp):
CAACATGTATCGATACATCTG
Found at i:2275870 original size:21 final size:21
Alignment explanation
Indices: 2275832--2275873 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
2275822 ATTTTTTGTT
2275832 AATGATTTTGATGAAAAATGA
1 AATGATTTTGATGAAAAATGA
*
2275853 AATG-TTTTGATGTGAAAATGA
1 AATGATTTTGATG-AAAAATGA
2275874 TGAATTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (21 bp):
AATGATTTTGATGAAAAATGA
Found at i:2277456 original size:16 final size:16
Alignment explanation
Indices: 2277429--2277465 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
2277419 TTTTATCAAT
2277429 ATTTTCTCTATTAAAA
1 ATTTTCTCTATTAAAA
2277445 CATTTT-TCTATTAAAA
1 -ATTTTCTCTATTAAAA
2277461 ATTTT
1 ATTTT
2277466 GAAAGCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 5 0.25
16 10 0.50
17 5 0.25
ACGTcount: A:0.35, C:0.11, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTCTCTATTAAAA
Found at i:2278088 original size:34 final size:35
Alignment explanation
Indices: 2278050--2278116 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2278040 CCTTACAACA
2278050 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
2278084 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
2278117 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:2278593 original size:13 final size:13
Alignment explanation
Indices: 2278575--2278600 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2278565 CAATTTTTTG
2278575 TGTATCGATACAT
1 TGTATCGATACAT
2278588 TGTATCGATACAT
1 TGTATCGATACAT
2278601 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2278665 original size:21 final size:21
Alignment explanation
Indices: 2278639--2278714 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
2278629 CTGCCAAGAA
2278639 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
2278660 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2278680 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2278701 ATGTATCGATACAT
1 ATGTATCGATACAT
2278715 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2278684 original size:20 final size:20
Alignment explanation
Indices: 2278659--2278732 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
2278649 ACATCTTTTT
2278659 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
2278679 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
2278700 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
2278720 CATGTATCGATAC
1 CATGTATCGATAC
2278733 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:2278696 original size:41 final size:41
Alignment explanation
Indices: 2278639--2278732 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
2278629 CTGCCAAGAA
2278639 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2278680 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2278721 ATGTATCGATAC
1 ATGTATCGATAC
2278733 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:2279393 original size:21 final size:21
Alignment explanation
Indices: 2279352--2279395 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
2279342 CTCCCCTTTA
* *
2279352 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
2279373 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
2279394 TC
1 TC
2279396 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:2280407 original size:13 final size:13
Alignment explanation
Indices: 2280389--2280413 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2280379 ACTGAAGCAA
2280389 TGTATCGATACAT
1 TGTATCGATACAT
2280402 TGTATCGATACA
1 TGTATCGATACA
2280414 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2283577 original size:34 final size:35
Alignment explanation
Indices: 2283539--2283605 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2283529 CCTTACAACA
2283539 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
2283573 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
2283606 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:2284082 original size:13 final size:13
Alignment explanation
Indices: 2284064--2284089 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2284054 CAATTTTTTG
2284064 TGTATCGATACAT
1 TGTATCGATACAT
2284077 TGTATCGATACAT
1 TGTATCGATACAT
2284090 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2284154 original size:21 final size:21
Alignment explanation
Indices: 2284128--2284203 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
2284118 CTGCCAAGAA
2284128 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
2284149 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2284169 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2284190 ATGTATCGATACAT
1 ATGTATCGATACAT
2284204 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2284173 original size:20 final size:20
Alignment explanation
Indices: 2284148--2284221 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
2284138 ACATCTTTTT
2284148 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
2284168 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
2284189 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
2284209 CATGTATCGATAC
1 CATGTATCGATAC
2284222 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:2284185 original size:41 final size:41
Alignment explanation
Indices: 2284128--2284221 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
2284118 CTGCCAAGAA
2284128 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2284169 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2284210 ATGTATCGATAC
1 ATGTATCGATAC
2284222 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:2284882 original size:21 final size:21
Alignment explanation
Indices: 2284841--2284884 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
2284831 CTCCCCTTTA
* *
2284841 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
2284862 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
2284883 TC
1 TC
2284885 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:2285896 original size:13 final size:13
Alignment explanation
Indices: 2285878--2285902 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2285868 ACTGAAGCAA
2285878 TGTATCGATACAT
1 TGTATCGATACAT
2285891 TGTATCGATACA
1 TGTATCGATACA
2285903 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2289066 original size:34 final size:35
Alignment explanation
Indices: 2289028--2289094 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2289018 CCTTACAACA
2289028 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
2289062 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
2289095 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:2289571 original size:13 final size:13
Alignment explanation
Indices: 2289553--2289578 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2289543 CAATTTTTTG
2289553 TGTATCGATACAT
1 TGTATCGATACAT
2289566 TGTATCGATACAT
1 TGTATCGATACAT
2289579 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2289643 original size:21 final size:21
Alignment explanation
Indices: 2289617--2289692 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
2289607 CTGCCAAGAA
2289617 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
2289638 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
2289658 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
2289679 ATGTATCGATACAT
1 ATGTATCGATACAT
2289693 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:2289662 original size:20 final size:20
Alignment explanation
Indices: 2289637--2289710 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
2289627 ACATCTTTTT
2289637 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
2289657 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
2289678 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
2289698 CATGTATCGATAC
1 CATGTATCGATAC
2289711 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:2289674 original size:41 final size:41
Alignment explanation
Indices: 2289617--2289710 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
2289607 CTGCCAAGAA
2289617 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2289658 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
2289699 ATGTATCGATAC
1 ATGTATCGATAC
2289711 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:2293300 original size:13 final size:13
Alignment explanation
Indices: 2293282--2293308 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2293272 TACAATGAAC
2293282 ATGTATCGATACA
1 ATGTATCGATACA
2293295 ATGTATCGATACA
1 ATGTATCGATACA
2293308 A
1 A
2293309 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2295696 original size:19 final size:19
Alignment explanation
Indices: 2295656--2295711 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
2295646 CTGCCAGTTT
2295656 CATGTATCGATACAATTGAA
1 CATGTATCGATACAA-TGAA
2295676 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
2295695 CATGTATCGATACAATG
1 CATGTATCGATACAATG
2295712 TATCGATACA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 21 0.58
20 15 0.42
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:2295714 original size:13 final size:13
Alignment explanation
Indices: 2295696--2295722 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
2295686 TACAATGAAC
2295696 ATGTATCGATACA
1 ATGTATCGATACA
2295709 ATGTATCGATACA
1 ATGTATCGATACA
2295722 A
1 A
2295723 AGCATAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2298740 original size:20 final size:20
Alignment explanation
Indices: 2298715--2298791 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
2298705 TTTTACCCAG
2298715 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
2298735 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
2298755 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
2298775 ATGTATCGATACATTTT
1 ATGTATCGATACATTTT
2298792 GTCTTTTTAC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:2298834 original size:91 final size:90
Alignment explanation
Indices: 2298664--2298839 Score: 289
Period size: 91 Copynumber: 1.9 Consensus size: 90
2298654 ATTTTACCCA
* * *
2298664 AATGTATCAATACATTTTTCAATGTATCGATATATTCTGTCTTTTACCCAGATGTATCGATACAT
1 AATGTATCAATACATTCTTCAATGTATCGATACATTCTGTCTTTTACCAAGATGTATCGATACAT
*
2298729 TTTTCAATGTATCGATACATGTATG
66 TTTTCAATGTATCGACACATGTATG
* *
2298754 AATGTATCGATACATTCTTCAATGTATCGATACATTTTGTCTTTTTACCAAGATGTATCGATACA
1 AATGTATCAATACATTCTTCAATGTATCGATACATTCTGTC-TTTTACCAAGATGTATCGATACA
2298819 TTTTTCAATGTATCGACACAT
65 TTTTTCAATGTATCGACACAT
2298840 CTAGTTAAAA
Statistics
Matches: 79, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
90 37 0.47
91 42 0.53
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.41
Consensus pattern (90 bp):
AATGTATCAATACATTCTTCAATGTATCGATACATTCTGTCTTTTACCAAGATGTATCGATACAT
TTTTCAATGTATCGACACATGTATG
Found at i:2299731 original size:20 final size:22
Alignment explanation
Indices: 2299691--2299738 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
2299681 TAGCCTTTGA
*
2299691 CCATGCATTTTTTTACTATGTT
1 CCATGCATTTTTTAACTATGTT
2299713 CCATGCA-TTTTTAAC-ATG-T
1 CCATGCATTTTTTAACTATGTT
2299732 CCA-GCAT
1 CCATGCAT
2299739 CTCATTGAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 3 0.12
19 4 0.17
20 3 0.12
21 7 0.29
22 7 0.29
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.44
Consensus pattern (22 bp):
CCATGCATTTTTTAACTATGTT
Found at i:2302411 original size:20 final size:20
Alignment explanation
Indices: 2302388--2302440 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
2302378 GTTGGGCATA
*
2302388 ATGTATCGATACAAT-TCTTC
1 ATGTATCGATACAATGTC-CC
2302408 ATGTATCGATACAATGTCCC
1 ATGTATCGATACAATGTCCC
2302428 ATGTATCGATACA
1 ATGTATCGATACA
2302441 TTTCACTTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAATGTCCC
Found at i:2304763 original size:16 final size:16
Alignment explanation
Indices: 2304742--2304772 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2304732 TGGGTCAGTC
*
2304742 TCGGGTTCAGGTTCTT
1 TCGGGTTCAGATTCTT
2304758 TCGGGTTCAGATTCT
1 TCGGGTTCAGATTCT
2304773 CTTAGGTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.42
Consensus pattern (16 bp):
TCGGGTTCAGATTCTT
Found at i:2308277 original size:13 final size:12
Alignment explanation
Indices: 2308239--2308286 Score: 53
Period size: 11 Copynumber: 3.9 Consensus size: 12
2308229 TGCAGATAGT
2308239 AAGAAAAAAGAG
1 AAGAAAAAAGAG
* *
2308251 AA-AAATATGAG
1 AAGAAAAAAGAG
2308262 AAGAAAAAAGATG
1 AAGAAAAAAGA-G
2308275 AAGAAATAAAGA
1 AAGAAA-AAAGA
2308287 AACGTTGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 9 0.31
12 8 0.28
13 7 0.24
14 5 0.17
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.08
Consensus pattern (12 bp):
AAGAAAAAAGAG
Found at i:2308287 original size:24 final size:23
Alignment explanation
Indices: 2308239--2308287 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
2308229 TGCAGATAGT
*
2308239 AAGAAAAAAGAGAAAAATATGAG
1 AAGAAAAAAGAGAAAAATATAAG
2308262 AAGAAAAAAGATGAAGAAATA-AAG
1 AAGAAAAAAGA-GAA-AAATATAAG
2308286 AA
1 AA
2308288 ACGTTGTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 11 0.48
24 7 0.30
25 5 0.22
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.08
Consensus pattern (23 bp):
AAGAAAAAAGAGAAAAATATAAG
Found at i:2309018 original size:110 final size:113
Alignment explanation
Indices: 2308821--2309024 Score: 265
Period size: 110 Copynumber: 1.8 Consensus size: 113
2308811 AACTTAGAAG
*
2308821 AACATCAAATTTGTTTGATTTTCAAAGAAATTCATATTTTATACATTCCGATCCATTCGTGCCTA
1 AACATCAAATTTGTTTGATTTTCAAAGAAATTCATATTTTATACATTCCGATCCATTCATGCCTA
* * *
2308886 GGAAAATGGGGCACATATCCTATGAGTTTTGAAATTTTTGAGCCCAAC
66 GGAAAATGAGGCACATACCCTATCAGTTTTGAAATTTTTGAGCCCAAC
* * * * *
2308934 AACATCAAGTTTGTTTGA-TTT-GAA-AAATTCATATTTTGTATGA-TCTGATCCATTCATGCCT
1 AACATCAAATTTGTTTGATTTTCAAAGAAATTCATATTTTATA-CATTCCGATCCATTCATGCCT
*
2308995 AGGAAAATAGAGG-ATATACCCTATCAGTTT
65 AGGAAAAT-GAGGCACATACCCTATCAGTTT
2309025 CGAAGGCCAA
Statistics
Matches: 79, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
110 53 0.67
111 6 0.08
112 3 0.04
113 17 0.22
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.36
Consensus pattern (113 bp):
AACATCAAATTTGTTTGATTTTCAAAGAAATTCATATTTTATACATTCCGATCCATTCATGCCTA
GGAAAATGAGGCACATACCCTATCAGTTTTGAAATTTTTGAGCCCAAC
Found at i:2317179 original size:18 final size:17
Alignment explanation
Indices: 2317139--2317181 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
2317129 TATATTAAAT
2317139 GGAAATTGTTTATCAAA
1 GGAAATTGTTTATCAAA
2317156 GAGAAATTGTTT-TCAAGAA
1 G-GAAATTGTTTATC-A-AA
2317175 GGAAATT
1 GGAAATT
2317182 AGAACATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.33
Consensus pattern (17 bp):
GGAAATTGTTTATCAAA
Found at i:2317641 original size:23 final size:24
Alignment explanation
Indices: 2317602--2317646 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
2317592 TGTTTTAGAG
*
2317602 ATAAGTTTAAATGTTTTTCAAGCA
1 ATAAATTTAAATGTTTTTCAAGCA
2317626 ATAAATTT-AATGTTTTTCAAG
1 ATAAATTTAAATGTTTTTCAAG
2317647 TCAAAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.44
Consensus pattern (24 bp):
ATAAATTTAAATGTTTTTCAAGCA
Found at i:2318418 original size:35 final size:34
Alignment explanation
Indices: 2318368--2318433 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
2318358 GAAGTGATTG
* *
2318368 AGAGGTTCCATCTTAGCCTTTGCAAAAGATAGGAA
1 AGAGGTTCCAGCTTAGCCTTT-AAAAAGATAGGAA
*
2318403 AGAGGTTCTAGCTTAGCCTTTAAAAAGATAG
1 AGAGGTTCCAGCTTAGCCTTTAAAAAGATAG
2318434 TGTTGTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 9 0.32
35 19 0.68
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (34 bp):
AGAGGTTCCAGCTTAGCCTTTAAAAAGATAGGAA
Found at i:2318879 original size:81 final size:77
Alignment explanation
Indices: 2318764--2318969 Score: 218
Period size: 77 Copynumber: 2.6 Consensus size: 77
2318754 ATTGCATTCG
* *
2318764 CATTTGCATTATTTCATGTGCATTTTTTATTTTACTGATGCTTGCATTTACAACGTTTCATGCAT
1 CATTTGCATTATTTCATATGCATTTGTTATTTTACTGATGCTTGCATTTACAACG-TT--TGCAT
*
2318829 ATTTGCAT-AGCATTGGT
63 -TTTACATGA-CATT-GT
** * * * * *
2318846 -ATTTGCATTATTTCATATGCATTTGCCATTTTACTGATACTTACATCTGCATCGTTTGCATTTT
1 CATTTGCATTATTTCATATGCATTTGTTATTTTACTGATGCTTGCATTTACAACGTTTGCATTTT
2318910 ACATGACATTGT
66 ACATGACATTGT
* * * *
2318922 CATTTGCATCATTCCATAGGCATTTGTTACTTTACTGATGCTTGCATT
1 CATTTGCATTATTTCATATGCATTTGTTATTTTACTGATGCTTGCATT
2318970 CGTATCATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
76 2 0.02
77 48 0.47
78 6 0.06
80 2 0.02
81 45 0.44
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (77 bp):
CATTTGCATTATTTCATATGCATTTGTTATTTTACTGATGCTTGCATTTACAACGTTTGCATTTT
ACATGACATTGT
Found at i:2320346 original size:81 final size:80
Alignment explanation
Indices: 2320093--2320396 Score: 299
Period size: 81 Copynumber: 3.8 Consensus size: 80
2320083 TAACTTGCAC
* * * * * * * **
2320093 CAAACTCTTTTCATTACCGTTTGATGTGATGGTTTTTGCTCTGGTCAAACATTTTTTAATTCTTT
1 CAAACTCTTTTCATTACCATTTGATGTGATGGTTCTTACCCTAGTCAAACATCTTTTCATTCTCG
* *
2320158 TTTGACTATACCTGAT
66 TTTGA-TGTACCTGGT
* * * ** ** * *
2320174 CAAACTCTTTCCACTACTATTTGACATGATGGTTCCCACCCTATTCTAACA-CTTTTCATTGC-C
1 CAAACTCTTTTCATTACCATTTGATGTGATGGTTCTTACCCTAGTCAAACATCTTTTCATT-CTC
* *
2320237 GTTTGATTGTACCTAGC
65 GTTTGA-TGTACCTGGT
*
2320254 CAAACTCTTTTCATTACCATTTGATGTGATGGTTCTTACCCTAGTTAAACATCTTTTCATTCTCG
1 CAAACTCTTTTCATTACCATTTGATGTGATGGTTCTTACCCTAGTCAAACATCTTTTCATTCTCG
*
2320319 TTTGATGGTAACTGGT
66 TTTGAT-GTACCTGGT
* * *
2320335 CAAACTGTTTTCATTA-CAGTTTGATGTGATGGTTCTTGCTCTAGTCAAACATCTTTTCATTC
1 CAAACTCTTTTCATTACCA-TTTGATGTGATGGTTCTTACCCTAGTCAAACATCTTTTCATTC
2320397 CTATTTGATG
Statistics
Matches: 178, Mismatches: 40, Indels: 10
0.78 0.18 0.04
Matches are distributed among these distances:
80 63 0.35
81 115 0.65
ACGTcount: A:0.22, C:0.21, G:0.13, T:0.43
Consensus pattern (80 bp):
CAAACTCTTTTCATTACCATTTGATGTGATGGTTCTTACCCTAGTCAAACATCTTTTCATTCTCG
TTTGATGTACCTGGT
Found at i:2320542 original size:21 final size:20
Alignment explanation
Indices: 2320512--2320550 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
2320502 TGGATCCGGA
2320512 TTAATTAGGCTTAATTTATT
1 TTAATTAGGCTTAATTTATT
*
2320532 TTAATTTAGGCTTATTTTA
1 TTAA-TTAGGCTTAATTTA
2320551 AAAAATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.28, C:0.05, G:0.10, T:0.56
Consensus pattern (20 bp):
TTAATTAGGCTTAATTTATT
Found at i:2321524 original size:16 final size:16
Alignment explanation
Indices: 2321503--2321534 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
2321493 TTGGGTGAGG
2321503 AAAAAAGAAAAGAAGA
1 AAAAAAGAAAAGAAGA
*
2321519 AAAAAAGAAAGGAAGA
1 AAAAAAGAAAAGAAGA
2321535 TGAAGAAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAGAAGA
Found at i:2322766 original size:19 final size:20
Alignment explanation
Indices: 2322726--2322775 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
2322716 ACACCCAAAT
2322726 GTATCGATACATATAGCTTA
1 GTATCGATACATATAGCTTA
* *
2322746 GTATCGATACATGT-TCTTA
1 GTATCGATACATATAGCTTA
2322765 GTATCGATACA
1 GTATCGATACA
2322776 CACTAAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (20 bp):
GTATCGATACATATAGCTTA
Found at i:2322843 original size:13 final size:13
Alignment explanation
Indices: 2322825--2322849 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2322815 AACTCAGTCA
2322825 GTATCGATACATT
1 GTATCGATACATT
2322838 GTATCGATACAT
1 GTATCGATACAT
2322850 ACTTGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2322882 original size:20 final size:21
Alignment explanation
Indices: 2322835--2322890 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
2322825 GTATCGATAC
*
2322835 ATTGTATCGATACATACTTGA
1 ATTGTATCGATACATACGTGA
*
2322856 ATTGTATCGATACATAGGT-A
1 ATTGTATCGATACATACGTGA
*
2322876 TTTGTATCGATACAT
1 ATTGTATCGATACAT
2322891 TAAGTCCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.39
Consensus pattern (21 bp):
ATTGTATCGATACATACGTGA
Found at i:2331076 original size:20 final size:20
Alignment explanation
Indices: 2331003--2331079 Score: 82
Period size: 20 Copynumber: 3.6 Consensus size: 20
2330993 AAAGGGGGAT
2331003 AATTTGTTAAGGGGGAGAAA
1 AATTTGTTAAGGGGGAGAAA
* * *
2331023 AATCTATTAAGGGAGAGTATTAA
1 AATTTGTTAAGGGGGAG-A--AA
2331046 ATATCTTGTTAAGGGGGAGAAA
1 A-AT-TTGTTAAGGGGGAGAAA
2331068 AATTTGTTAAGG
1 AATTTGTTAAGG
2331080 AGTACTAAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
20 23 0.50
21 3 0.07
22 3 0.07
23 3 0.07
24 3 0.07
25 11 0.24
ACGTcount: A:0.39, C:0.03, G:0.29, T:0.30
Consensus pattern (20 bp):
AATTTGTTAAGGGGGAGAAA
Found at i:2331683 original size:20 final size:19
Alignment explanation
Indices: 2331660--2331710 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
2331650 CACCCAGATA
*
2331660 TATCAATACATATTGCTTAG
1 TATCGATACATATT-CTTAG
*
2331680 TATCGATACATGTTCTTAG
1 TATCGATACATATTCTTAG
2331699 TATCGATACATA
1 TATCGATACATA
2331711 CTGAATTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (19 bp):
TATCGATACATATTCTTAG
Found at i:2331699 original size:19 final size:20
Alignment explanation
Indices: 2331660--2331730 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
2331650 CACCCAGATA
*
2331660 TATCAATACATATTGCTTAG
1 TATCGATACATATTGCTTAG
*
2331680 TATCGATACATGTT-CTTAG
1 TATCGATACATATTGCTTAG
* *
2331699 TATCGATACATACTGAATT-G
1 TATCGATACATATTG-CTTAG
2331719 TATCGATACATA
1 TATCGATACATA
2331731 AAACTGGGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
19 17 0.39
20 25 0.57
21 2 0.05
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (20 bp):
TATCGATACATATTGCTTAG
Found at i:2331776 original size:13 final size:13
Alignment explanation
Indices: 2331758--2331782 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2331748 AACTCACTCA
2331758 GTATCGATACATT
1 GTATCGATACATT
2331771 GTATCGATACAT
1 GTATCGATACAT
2331783 ACTTAAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:2331993 original size:23 final size:24
Alignment explanation
Indices: 2331967--2332011 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
2331957 CAAACCCCAA
*
2331967 TTTTCTCACACAA-AATAATAAAG
1 TTTTATCACACAAGAATAATAAAG
* *
2331990 TTTTATTACACAAGAATTATAA
1 TTTTATCACACAAGAATAATAA
2332012 TTAAATGCTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.47, C:0.13, G:0.04, T:0.36
Consensus pattern (24 bp):
TTTTATCACACAAGAATAATAAAG
Found at i:2333898 original size:79 final size:79
Alignment explanation
Indices: 2333819--2334490 Score: 508
Period size: 79 Copynumber: 8.5 Consensus size: 79
2333809 GATTATAAAT
* * * *
2333819 TTAATATTTTGGAAGTAAAAATGAGGTTGGAGTATCCTCTTGGAAATGATAGGGTTAGAATATCC
1 TTAATATTTTGGAAGTAAAAATGAGGTTGGAGTATCCTCTTAGAAATGATGGGGTTGGAGTATCC
2333884 CCGATGGTG-AAAA
66 CCGATGGTGAAAAA
* * * * *
2333897 TTGATATTTTGCAAATAAAAAT-AGGGTTGGAGTATCCCCTTAGAAATGATGGGGTTAGAGTATC
1 TTAATATTTTGGAAGTAAAAATGA-GGTTGGAGTATCCTCTTAGAAATGATGGGGTTGGAGTATC
* **
2333961 CCTGATAATGGAAAAA
65 CCCGATGGT-GAAAAA
* * * * * * *
2333977 TTGATATTTTGGAAATAAAAATGGGGTTGGAGTTTCCCCTTAGAGATGGTGGGGTTGGAGTATCC
1 TTAATATTTTGGAAGTAAAAATGAGGTTGGAGTATCCTCTTAGAAATGATGGGGTTGGAGTATCC
* *
2334042 TCGA-GAT-AAAAA
66 CCGATGGTGAAAAA
* * * *
2334054 TTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTATACT-TTCAGAAATGATGGGGTTGGAATA
1 --TTAATATTTTGGAAGTAAAAATGAGGTTGGAGTATCCTCTT-AGAAATGATGGGGTTGGAGTA
****
2334118 TTTTTGATGGTGAAAAA
63 TCCCCGATGGTGAAAAA
* * * * ** *
2334135 TCAATATTTTGGAAAT-AAAAT-AGGGTTGGAGTATCCCCTCAGTGATGGTGGGGTTGGAGTATC
1 TTAATATTTTGGAAGTAAAAATGA-GGTTGGAGTATCCTCTTAGAAATGATGGGGTTGGAGTATC
* **
2334198 CTCGA-AAT-AAGAAA
65 CCCGATGGTGAA-AAA
* * * * *
2334212 TTTAATATTTTGAAAGTAAAAACGAAGTTGGAGTATCC-CTTTGGAAATGATGGGGTTGGATTAT
1 -TTAATATTTTGGAAGTAAAAATGAGGTTGGAGTATCCTC-TTAGAAATGATGGGGTTGGAGTAT
** * *
2334276 CTTCAATGGAGAAAAA
64 CCCCGATGGTGAAAAA
* * * * *
2334292 TCAATATTTTTGGAAGTAAGAAA-GGGGTTGGAGTATCC-CTTCGAAAATGATGAGGTTGAAGTA
1 TTAATA-TTTTGGAAGTAA-AAATGAGGTTGGAGTATCCTCTTAG-AAATGATGGGGTTGGAGTA
**
2334355 TCCCTAATGGTGAAAAA
63 TCCCCGATGGTGAAAAA
** * * * *
2334372 TCGATATTTTGGAAGTAAAAAT-AGGGTTGGAGTAT-CTCCTCAAAAATTATGGGGTTAGAGTAT
1 TTAATATTTTGGAAGTAAAAATGA-GGTTGGAGTATCCT-CTTAGAAATGATGGGGTTGGAGTAT
*
2334435 CTCCGATGGTGAAAAA
64 CCCCGATGGTGAAAAA
** * * *
2334451 TCGATATTTTTGGAAGTAAGAACGGGGTTGGAGTATCCTC
1 TTAATA-TTTTGGAAGTAAAAATGAGGTTGGAGTATCCTC
2334491 GATGGTGAAA
Statistics
Matches: 475, Mismatches: 91, Indels: 54
0.77 0.15 0.09
Matches are distributed among these distances:
76 2 0.00
77 10 0.02
78 119 0.25
79 175 0.37
80 157 0.33
81 12 0.03
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (79 bp):
TTAATATTTTGGAAGTAAAAATGAGGTTGGAGTATCCTCTTAGAAATGATGGGGTTGGAGTATCC
CCGATGGTGAAAAA
Found at i:2334110 original size:159 final size:157
Alignment explanation
Indices: 2333821--2334488 Score: 570
Period size: 159 Copynumber: 4.2 Consensus size: 157
2333811 TTATAAATTT
* * * * * * *
2333821 AATATTTTGGAAGTAAAAATGAGGTTGGAGTATCCTCTTGGAAATGATAGGGTTAGAATATCCCC
1 AATATTTTGGAAGTAAAAATGGGGTTGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTC
* * * *
2333886 GATGGTGAAAATTGATATTTTGCAAA-TAAAAATAGGGTTGGAGTATCCCCTTAGAAATGATGGG
66 GATGATAAAAATTAATATTTTG-AAAGTAAAAATAGGGTTGGAGTATCCCTTTAGAAATGATGGG
*
2333950 GTTAGAGTATCCCTGATAATGGAAAAATT
130 GTTAGAGTATCCCTGATAAT-GAAAAATC
* * * * *
2333979 GATATTTTGGAAATAAAAATGGGGTTGGAGTTTCCCCTTAGAGATGGTGGGGTTGGAGTATCCTC
1 AATATTTTGGAAGTAAAAATGGGGTTGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTC
* *
2334044 GA-GATAAAAATTTTAATATTTTGAAAGTAAAAATGGGGTTGGAGTAT-ACTTTCAGAAATGATG
66 GATGATAAAAA--TTAATATTTTGAAAGTAAAAATAGGGTTGGAGTATCCCTTT-AGAAATGATG
* * *** **
2334107 GGGTTGGAATATTTTTGATGGTGAAAAATC
128 GGGTTAGAGTATCCCTGATAATGAAAAATC
* * * ** *
2334137 AATATTTTGGAAAT-AAAATAGGGTTGGAGTATCCCCTCAGTGATGGTGGGGTTGGAGTATCCTC
1 AATATTTTGGAAGTAAAAATGGGGTTGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTC
* * * *
2334201 GA-AATAAGAAATTTAATATTTTGAAAGTAAAAA-CGAAGTTGGAGTATCCCTTTGGAAATGATG
66 GATGATAA-AAA-TTAATATTTTGAAAGTAAAAATAG-GGTTGGAGTATCCCTTTAGAAATGATG
* * * * *
2334264 GGGTTGGATTAT-CTTCAATGGA-GAAAAATC
128 GGGTTAGAGTATCCCT-GAT-AATGAAAAATC
* * *
2334294 AATATTTTTGGAAGTAAGAAA-GGGGTTGGAGTAT-CCCTTCGAAAATGATGAGGTTGAAGTATC
1 AATA-TTTTGGAAGTAA-AAATGGGGTTGGAGTATCCCCTTAG-AAATGATGGGGTTGGAGTATC
* * ** * * * *
2334357 C-CTAATGGTGAAAAATCGATATTTTGGAAGTAAAAATAGGGTTGGAGTATCTCC-TCAAAAATT
63 CTC-GATGAT-AAAAATTAATATTTTGAAAGTAAAAATAGGGTTGGAGTATC-CCTTTAGAAATG
**
2334420 ATGGGGTTAGAGTATCTCC-GATGGTGAAAAATC
125 ATGGGGTTAGAGTATC-CCTGATAATGAAAAATC
* * *
2334453 GATATTTTTGGAAGTAAGAACGGGGTTGGAGTATCC
1 AATA-TTTTGGAAGTAAAAATGGGGTTGGAGTATCC
2334489 TCGATGGTGA
Statistics
Matches: 419, Mismatches: 68, Indels: 44
0.79 0.13 0.08
Matches are distributed among these distances:
156 3 0.01
157 124 0.30
158 107 0.26
159 171 0.41
160 11 0.03
161 3 0.01
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (157 bp):
AATATTTTGGAAGTAAAAATGGGGTTGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTC
GATGATAAAAATTAATATTTTGAAAGTAAAAATAGGGTTGGAGTATCCCTTTAGAAATGATGGGG
TTAGAGTATCCCTGATAATGAAAAATC
Found at i:2334321 original size:237 final size:234
Alignment explanation
Indices: 2333768--2334488 Score: 708
Period size: 237 Copynumber: 3.0 Consensus size: 234
2333758 AAATCAGGGA
* * * * * * *
2333768 TGGAGTATCCCCTCA-AAAT-ACGGGGTTGGAGTACCCTTAATGATTATAAATTTAATATTTTGG
1 TGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTCAA-GA-GAAAAATTCAATATTTTGG
* * * *
2333831 AAGTAAAAATGAGGTTGGAGTATCCTCTTGGAAATGATAGGGTTAGAATATCCCCGATGGTG-AA
64 AAGTAAAAATGGGGTTGGAGTATCCT-TTCGAAATGATGGGGTT-GAATATCCCTGATGGTGAAA
* * *
2333895 AATTGATATTTTGCAAATAAAAATAGGGTTGGAGTATCCCCTTAGAAATGATGGGGTTAGAGTAT
127 AATCGATATTTTGGAAATAAAAATAGGGTTGGAGTATCCCCTCAGAAATGATGGGGTTAGAGTAT
* * **
2333960 CCCTGATAATGGAAAAATTGATATTTTGGAAATAAAAATGGGGT
192 CCCTGATAAT-GAAAAATTAATATTTTGGAAATAAAAACGAAGT
* * * * * * *
2334004 TGGAGTTTCCCCTTAGAGATGGTGGGGTTGGAGTATCCTCGAGATAAAAATTTTAATATTTTGAA
1 TGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTCAAGAGAAAAA-TTCAATATTTTGGA
* ***
2334069 AGTAAAAATGGGGTTGGAGTATACTTTCAGAAATGATGGGGTTGGAATATTTTTGATGGTGAAAA
65 AGTAAAAATGGGGTTGGAGTATCCTTTC-GAAATGATGGGGTT-GAATATCCCTGATGGTGAAAA
* ** * *
2334134 ATCAATATTTTGGAAAT-AAAATAGGGTTGGAGTATCCCCTCAGTGATGGTGGGGTTGGAGTAT-
128 ATCGATATTTTGGAAATAAAAATAGGGTTGGAGTATCCCCTCAGAAATGATGGGGTTAGAGTATC
2334197 CCTCGA-AAT-AAGAAATTTAATATTTT-GAAAGTAAAAACGAAGT
193 CCT-GATAATGAA-AAA-TTAATATTTTGGAAA-TAAAAACGAAGT
* * * *
2334240 TGGAGTATCCCTTTGGAAATGATGGGGTTGGATTATCTTCAATGGAGAAAAA-TCAATATTTTTG
1 TGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTCAA--GAGAAAAATTCAATA-TTTTG
* * *
2334304 GAAGTAAGAAA-GGGGTTGGAGTATCCCTTCGAAAATGATGAGGTTGAAGTATCCCTAATGGTGA
63 GAAGTAA-AAATGGGGTTGGAGTATCCTTTCG-AAATGATGGGGTTGAA-TATCCCTGATGGTGA
* * * *
2334368 AAAATCGATATTTTGGAAGTAAAAATAGGGTTGGAGTATCTCCTCAAAAATTATGGGGTTAGAGT
125 AAAATCGATATTTTGGAAATAAAAATAGGGTTGGAGTATCCCCTCAGAAATGATGGGGTTAGAGT
** ** * * **
2334433 ATCTCC-GATGGTGAAAAATCGATATTTTTGGAAGTAAGAACGGGGT
190 ATC-CCTGATAATGAAAAATTAATA-TTTTGGAAATAAAAACGAAGT
2334479 TGGAGTATCC
1 TGGAGTATCC
2334489 TCGATGGTGA
Statistics
Matches: 397, Mismatches: 66, Indels: 41
0.79 0.13 0.08
Matches are distributed among these distances:
234 2 0.01
235 7 0.02
236 87 0.22
237 179 0.45
238 88 0.22
239 27 0.07
240 7 0.02
ACGTcount: A:0.34, C:0.09, G:0.26, T:0.31
Consensus pattern (234 bp):
TGGAGTATCCCCTTAGAAATGATGGGGTTGGAGTATCCTCAAGAGAAAAATTCAATATTTTGGAA
GTAAAAATGGGGTTGGAGTATCCTTTCGAAATGATGGGGTTGAATATCCCTGATGGTGAAAAATC
GATATTTTGGAAATAAAAATAGGGTTGGAGTATCCCCTCAGAAATGATGGGGTTAGAGTATCCCT
GATAATGAAAAATTAATATTTTGGAAATAAAAACGAAGT
Found at i:2336972 original size:20 final size:20
Alignment explanation
Indices: 2336930--2336996 Score: 64
Period size: 20 Copynumber: 3.2 Consensus size: 20
2336920 GCATGGTCCC
***
2336930 GTATCAATACATTTCAAGCAT
1 GTATCAATACA-TTCACTTAT
2336951 GTATCAATACATTCACTTAT
1 GTATCAATACATTCACTTAT
*
2336971 GTATCGATACATT-ACCTTATT
1 GTATCAATACATTCA-CTTA-T
2336992 GTATC
1 GTATC
2336997 GATAAAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
19 1 0.03
20 22 0.55
21 17 0.43
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (20 bp):
GTATCAATACATTCACTTAT
Found at i:2336996 original size:21 final size:20
Alignment explanation
Indices: 2336949--2337000 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 20
2336939 CATTTCAAGC
*
2336949 ATGTATCAATACATTCACTT
1 ATGTATCGATACATTCACTT
2336969 ATGTATCGATACATT-ACCTT
1 ATGTATCGATACATTCA-CTT
2336989 ATTGTATCGATA
1 A-TGTATCGATA
2337001 AAAATTGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 1 0.03
20 18 0.62
21 10 0.34
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:2338417 original size:13 final size:13
Alignment explanation
Indices: 2338399--2338423 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2338389 TACAGTGGTC
2338399 ATGTATCGATACA
1 ATGTATCGATACA
2338412 ATGTATCGATAC
1 ATGTATCGATAC
2338424 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2341475 original size:3 final size:3
Alignment explanation
Indices: 2341467--2341497 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
2341457 GCAGCACTGT
*
2341467 AGA AGA AGA AAA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
2341498 ATGAGCCAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:2346799 original size:49 final size:49
Alignment explanation
Indices: 2346620--2347323 Score: 559
Period size: 49 Copynumber: 14.8 Consensus size: 49
2346610 AAAAAGATGT
* * * * * * * *
2346620 CAATGCGCTGATTTACGGTCAGCGTCATTAGACTTGAAGAAGAA--TGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
** ** *
2346667 CAATGTGCTGAGACAAGGCCAGCGACATTGGGTTTTAAAGAT-AACGAATGCAC
1 CAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGAA-G-GTG--C
* *
2346720 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * * *
2346769 CAATGTGCTAAGTCAATGTCAGCGACATTGGACTTAAAGAAGAA--TGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * ** *
2346816 CAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACAAAGGCGC
1 CAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATG---AAGGTGC
* ** *
2346869 CAATATGCTGATTCAAGGCCAGCGTTATTGAACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
2346918 CAATGTGCTGAGTT-AAGGCCAGCGACAATGGTCTTAAAGATAAAGGTGC
1 CAATGTGCTGA-TTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
2346967 CAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * ** *
2347010 CAATGTGCTGATTTAAGGCCAGCGACATTAGTCTTAAAGACAAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * * *
2347059 CAATATGCTGATTCAAGGCTAGCGATAGTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
*
2347102 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--G-A---GC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * ** *
2347145 CAATGTGCTGATTCAAGGCCAGCGACCTTGGACTTAACGACAAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
2347194 CAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* ** *
2347237 CAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGACAAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
2347286 CAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA
2347324 AGAAGATGCC
Statistics
Matches: 525, Mismatches: 93, Indels: 76
0.76 0.13 0.11
Matches are distributed among these distances:
43 149 0.28
45 3 0.01
46 2 0.00
47 52 0.10
48 19 0.04
49 217 0.41
50 2 0.00
51 6 0.01
52 21 0.04
53 54 0.10
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
Found at i:2347047 original size:92 final size:92
Alignment explanation
Indices: 2346719--2347323 Score: 498
Period size: 92 Copynumber: 6.4 Consensus size: 92
2346709 AACGAATGCA
* * * * * * *
2346719 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTAAGTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCA
* * *
2346784 ATGTCAGCGACATTGGACTTAAAGAAGAATG
66 AGGCCAGCGATATTGGACTTAAAG--G--TG
* * * *
2346815 CCAATGTGTTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACAAAGGCGCCAATATGCTGA
1 CCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGAT---AAAGGTGCCAATATGCTGA
* *
2346880 TTCAAGGCCAGCGTTATTGAACTTAAAGATGAAGGTG
62 TTCAAGGCCAGCGATATTGGACTT----A--AAGGTG
*
2346917 CCAATGTGCTGAGTT-AAGGCCAGCGACAATGGTCTTAAAGATAAAGGTGCCAATATGCTGATTC
1 CCAATGTGCTGA-TTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTC
*
2346981 AAGGCCAACGATATTGGACTTAAAGGTG
65 AAGGCCAGCGATATTGGACTTAAAGGTG
* * * *
2347009 CCAATGTGCTGATTTAAGGCCAGCGACATTAGTCTTAAAGACAAAGATGCCAATATGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCA
* *
2347074 AGGCTAGCGATAGTGGACTTAAAGGTG
66 AGGCCAGCGATATTGGACTTAAAGGTG
* * * *
2347101 CCAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGAGCCAATGTGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCA
** *
2347160 AGGCCAGCGACCTTGGACTTAACGACAAAGATG
66 AGGCCAGCGATATTGGACTT------AAAGGTG
* * * * *
2347193 CCAATATGCTGATTCAAGGCCAACGATATTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCA
* *
2347252 AGGCCAGCGACATTAGACTTAAAGACAAAGATG
66 AGGCCAGCGATATTGGACTTAAAG-----G-TG
* * * *
2347285 CCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAA
1 CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAA
2347324 AGAAGATGCC
Statistics
Matches: 429, Mismatches: 52, Indels: 56
0.80 0.10 0.10
Matches are distributed among these distances:
86 40 0.09
91 3 0.01
92 232 0.54
93 1 0.00
94 1 0.00
96 26 0.06
97 10 0.02
98 39 0.09
100 33 0.08
101 11 0.03
102 26 0.06
103 2 0.00
104 2 0.00
106 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (92 bp):
CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGGTG
Found at i:2347154 original size:135 final size:135
Alignment explanation
Indices: 2346861--2347323 Score: 525
Period size: 135 Copynumber: 3.3 Consensus size: 135
2346851 TAAAGATGAC
* * ** ** * *
2346861 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGTTATT-GAACTTAAAGATGAAGGTGCCAATGTG
1 AAAGGAGCCAATGTGCTGATTCAAGGCCAGCGACATTAG-ACTTAAAGACAAAGATGCCAATATG
* * * * * *
2346925 CTGAGTT-AAGGCCAGCGACAATGGTCTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAA
65 CTGA-TTCAAGGCCAACGATAGTGGAC-T-----TAAAGGTGCCAATGTGCTGATTCAAGGCCAG
2346989 CGATATTGGACTT
123 CGATATTGGACTT
* * *
2347002 AAAGGTGCCAATGTGCTGATTTAAGGCCAGCGACATTAGTCTTAAAGACAAAGATGCCAATATGC
1 AAAGGAGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGACAAAGATGCCAATATGC
* *
2347067 TGATTCAAGGCTAGCGATAGTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTG
66 TGATTCAAGGCCAACGATAGTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTG
2347132 GACTT
131 GACTT
* * *
2347137 AAAGGAGCCAATGTGCTGATTCAAGGCCAGCGACCTTGGACTTAACGACAAAGATGCCAATATGC
1 AAAGGAGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGACAAAGATGCCAATATGC
* * *
2347202 TGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTA
66 TGATTCAAGGCCAACGATAGTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTG
2347267 GACTT
131 GACTT
* * * *
2347272 AAAGACAAAGATGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAA
1 AAAG-----GA-GCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAA
2347324 AGAAGATGCC
Statistics
Matches: 282, Mismatches: 32, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
135 170 0.60
140 5 0.02
141 106 0.38
142 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (135 bp):
AAAGGAGCCAATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGACAAAGATGCCAATATGC
TGATTCAAGGCCAACGATAGTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTG
GACTT
Found at i:2347162 original size:21 final size:21
Alignment explanation
Indices: 2347095--2347162 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
2347085 AGTGGACTTA
*
2347095 AAGGTGCCAATGTGCTGATTC
1 AAGGAGCCAATGTGCTGATTC
* *
2347116 AAGGCCAGCGATAT-TG--GACTTA
1 AAGG--AGCCA-ATGTGCTGA-TTC
2347138 AAGGAGCCAATGTGCTGATTC
1 AAGGAGCCAATGTGCTGATTC
2347159 AAGG
1 AAGG
2347163 CCAGCGACCT
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
19 2 0.06
20 6 0.17
21 12 0.34
22 8 0.23
23 5 0.14
24 2 0.06
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (21 bp):
AAGGAGCCAATGTGCTGATTC
Found at i:2347275 original size:227 final size:230
Alignment explanation
Indices: 2346651--2347323 Score: 746
Period size: 227 Copynumber: 2.8 Consensus size: 230
2346641 GCGTCATTAG
* * ** * ** * *
2346651 ACTTGAAGAAGAATGCCAATGTGCTGAGACAAGGCCAGCGACATTGGGTTTTAAAGATAACGAAT
1 ACTTAAAG-AGAAGGCCAATGTGCTGAGTTAAGGCCAGCGACAAT-GGACTTAAAGACAAAG-AT
* * *
2346716 GCACCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTAAG
63 G--CCAATATGCTGATTCAAGGCCAACGATATTGGACTT----A--AAGGTGCCAATGTGCTGAT
* * * * * * * * * *
2346781 TCAATGTCAGCGACATTGGACTTAAAGA-AGA-ATGCCAATGTGTTGATTCAAGGCCAACGACAT
120 TCAAGGCCAGCGACATTAGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCTAGCGATAG
* * *
2346844 TGGGTTTTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGTTATTGA
185 T-GG------A-CT--TAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGA
* * *
2346900 ACTTAAAGATGAAGGTGCCAATGTGCTGAGTTAAGGCCAGCGACAATGGTCTTAAAGATAAAGGT
1 ACTTAAAGA-GAA-G-GCCAATGTGCTGAGTTAAGGCCAGCGACAATGGACTTAAAGACAAAGAT
*
2346965 GCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTTAAGGCC
63 GCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCC
*
2347030 AGCGACATTAGTCTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCTAGCGATAGTGGACTTA
128 AGCGACATTAGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCTAGCGATAGTGGACTTA
* * *
2347095 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGG
193 AAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGA
** *
2347133 ACTTAAAG-G-A-GCCAATGTGCTGA-TTCAAGGCCAGCGACCTTGGACTTAACGACAAAGATGC
1 ACTTAAAGAGAAGGCCAATGTGCTGAGTT-AAGGCCAGCGACAATGGACTTAAAGACAAAGATGC
2347194 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
65 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAG
*
2347259 CGACATTAGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAA
130 CGACATTAGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCTAGCGATAGTGGACTTAAA
2347324 AGAAGATGCC
Statistics
Matches: 380, Mismatches: 38, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
226 2 0.01
227 169 0.44
230 1 0.00
231 1 0.00
233 43 0.11
235 1 0.00
236 1 0.00
241 40 0.11
242 4 0.01
243 28 0.07
247 35 0.09
248 1 0.00
249 12 0.03
250 14 0.04
251 28 0.07
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (230 bp):
ACTTAAAGAGAAGGCCAATGTGCTGAGTTAAGGCCAGCGACAATGGACTTAAAGACAAAGATGCC
AATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGC
GACATTAGACTTAAAGACAAAGATGCCAATATGCTGATTCAAGGCTAGCGATAGTGGACTTAAAG
GCGCCAATATGCTGATTCAAGGCCAGCGATATTGA
Found at i:2347526 original size:34 final size:32
Alignment explanation
Indices: 2347384--2347746 Score: 305
Period size: 34 Copynumber: 10.8 Consensus size: 32
2347374 TGTGCTTTTG
* * * *
2347384 AAGGTTGCCACTGACTTGTGGGCTTAAAAGGAGA
1 AAGG-TGCCACGGAGTTGTGGACTTAAAA-GAAA
*
2347418 AAGATGCCACGGAGTTGTGGACTTAAAAAGAAAAA
1 AAGGTGCCACGGAGTTGTGGACTT-AAAAG--AAA
* * *
2347453 AAGATGCCACGAAGTTGTGGACTTAAAAGGAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
* * *
2347485 AATGTGCCACGGAGTGGTGGGCTTTGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAAA
*
2347519 AAGGTGCCACGGAGTTGTGGACTTACAAGAAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
* * *
2347551 AAGGGATGCTACTGAGTTGTGGACTTTGAAAGAAA
1 AA-GG-TGCCACGGAGTTGTGGAC-TTAAAAGAAA
* * *
2347586 AAGATGCCACGCAGTTGTGGATTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGA-CTT-AAAAGAAA
* * *
2347620 ATGAGTGGCACGGAGTTGTGGGCTTTAAAAAGAAA
1 AAG-GTGCCACGGAGTTGTGGAC-TT-AAAAGAAA
2347655 AAGGTGCCACGGAGTTGTGGACTTGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGACTT-AAAAGAAA
** *
2347688 AAGAGTGCCATAGAGTTGTGGGCTTACAGAA-AAA
1 AAG-GTGCCACGGAGTTGTGGACTTA-A-AAGAAA
* *
2347722 AAGGATGCCACTGAGTCGTGGACTT
1 AAGG-TGCCACGGAGTTGTGGACTT
2347747 GCAGAAGAGA
Statistics
Matches: 269, Mismatches: 44, Indels: 32
0.78 0.13 0.09
Matches are distributed among these distances:
32 28 0.10
33 55 0.20
34 122 0.45
35 64 0.24
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (32 bp):
AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
Found at i:2347661 original size:136 final size:135
Alignment explanation
Indices: 2347420--2347746 Score: 403
Period size: 136 Copynumber: 2.4 Consensus size: 135
2347410 AAAGGAGAAA
*
2347420 GATGCCACGGAGTTGTGGACTTAAAAAGAAAAAAAGATGCCACGAAGTTGTGGACTTAAAAGGAA
1 GATGCCACGGAGTTGTGGACTTAAAAAG-AAAAAAGATGCCACGAAGTTGTGGACTTAAAAAGAA
* *
2347485 AATGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT-ACAAGA
65 AATGTGCCACGGAGTGGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAAGA
2347549 AAAAGG
130 AAAAGG
* * ** * *
2347555 GATGCTACTGAGTTGTGGACTTTGAAAG-AAAAAGATGCCACGCAGTTGTGGATTTTAAAAAGAA
1 GATGCCACGGAGTTGTGGACTTAAAAAGAAAAAAGATGCCACGAAGTTGTGGA-CTTAAAAAGAA
* *
2347619 AATGAGTGGCACGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAA
65 AAT--GTGCCACGGAGTGGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAA
*
2347684 GAAAAAGA
128 GAAAAAGG
** * * * *
2347692 G-TGCCATAGAGTTGTGGGCTTACAGAA-AAAAAGGATGCCACTG-AGTCGTGGACTT
1 GATGCCACGGAGTTGTGGACTTA-AAAAGAAAAAAGATGCCAC-GAAGTTGTGGACTT
2347747 GCAGAAGAGA
Statistics
Matches: 163, Mismatches: 22, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
133 23 0.14
134 12 0.07
135 24 0.15
136 70 0.43
137 33 0.20
138 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (135 bp):
GATGCCACGGAGTTGTGGACTTAAAAAGAAAAAAGATGCCACGAAGTTGTGGACTTAAAAAGAAA
ATGTGCCACGGAGTGGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTGAAAAGAA
AAAGG
Found at i:2349037 original size:14 final size:15
Alignment explanation
Indices: 2349020--2349058 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
2349010 GCCTTTACAC
2349020 TTTTTTTGTGTGT-T
1 TTTTTTTGTGTGTGT
*
2349034 TTTTTTTGT-TTTGT
1 TTTTTTTGTGTGTGT
2349048 TTTTTTTGTGT
1 TTTTTTTGTGT
2349059 CTACTTTTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 2 0.09
14 19 0.86
15 1 0.05
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (15 bp):
TTTTTTTGTGTGTGT
Found at i:2365621 original size:52 final size:52
Alignment explanation
Indices: 2365543--2365723 Score: 335
Period size: 52 Copynumber: 3.5 Consensus size: 52
2365533 CGAAATATGA
* * *
2365543 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
2365595 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
2365647 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
2365699 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
2365724 AAGATCAGTG
Statistics
Matches: 126, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 126 1.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
Found at i:2365750 original size:13 final size:13
Alignment explanation
Indices: 2365732--2365756 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2365722 CAAAGATCAG
2365732 TGTATCGATACAA
1 TGTATCGATACAA
2365745 TGTATCGATACA
1 TGTATCGATACA
2365757 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2365838 original size:13 final size:13
Alignment explanation
Indices: 2365820--2365844 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2365810 AAAAAAAATA
2365820 TGTATCGATACAT
1 TGTATCGATACAT
2365833 TGTATCGATACA
1 TGTATCGATACA
2365845 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2365858 original size:20 final size:20
Alignment explanation
Indices: 2365833--2365885 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
2365823 ATCGATACAT
2365833 TGTATCGATACAACACTTTA
1 TGTATCGATACAACACTTTA
2365853 TGTATCGATACAACACTTTA
1 TGTATCGATACAACACTTTA
2365873 TGTATCGATACAA
1 TGTATCGATACAA
2365886 ATCGTTGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.36, C:0.19, G:0.11, T:0.34
Consensus pattern (20 bp):
TGTATCGATACAACACTTTA
Found at i:2366581 original size:55 final size:54
Alignment explanation
Indices: 2366480--2367093 Score: 279
Period size: 49 Copynumber: 12.6 Consensus size: 54
2366470 AAGTGATAAA
* * * * * * **
2366480 GATGCCAATATGTTGATTCACGACCAACGATATTGGGCTTAAAGATGAGAAAAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-GAAAAAG
* *
2366535 GATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG-AAAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* * * * *
2366588 G-TGCCATTATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT-GATAAA-
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* * * * * * * * *
2366639 GACGCCAATATGCTGATTCAAGGCCAGCGATATAGGACTTAAGGGT-GACAAAT
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* * **
2366692 G-CGCCAATATGCTGATTCAAGGCCAGC-A-A-T--A-TTAGACTTGG----AG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* *
2366735 G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G---AAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
** * * *
2366784 G-TGCCAATATATTGATTCAAGGCCAGCGATATTGGAC-T-----T----AAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* * *
2366827 G-TGCCAATGTGCTGATTCAAGGCCATCTACATTGGACTTAAAGAT-G---AAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* * *
2366876 G-TGCCAATATGTTGATTCAAGGCCAGCTATATTGGAC-T-----T----AAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* *
2366919 G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G---AAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* * *
2366968 G-TGCCAATATGCTGATTTAAGGCCAGCTATATTGGAC-T-----T----AAAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
* * *
2367011 G-TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGAT-G---AAG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
*
2367060 G-TGCCAATATGCTGATTCAAGGCCAGCTATATTG
1 GATGCCAATATGCTGATTCAAGGCCAGCTACATTG
2367094 GGCTTAGAAG
Statistics
Matches: 462, Mismatches: 62, Indels: 76
0.77 0.10 0.13
Matches are distributed among these distances:
43 136 0.29
44 4 0.01
45 1 0.00
46 5 0.01
47 2 0.00
48 5 0.01
49 149 0.32
50 1 0.00
51 3 0.01
52 111 0.24
53 7 0.02
54 1 0.00
55 37 0.08
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (54 bp):
GATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAAG
Found at i:2366822 original size:92 final size:92
Alignment explanation
Indices: 2366642--2367104 Score: 710
Period size: 92 Copynumber: 5.0 Consensus size: 92
2366632 TGATAAAGAC
* * * * * * * *
2366642 GCCAATATGCTGATTCAAGGCCAGCGATATAGGACTTAAGGGTGACAAATGCGCCAATATGCTGA
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATATGCTGA
* * **
2366707 TTCAAGGCCAGCAATATTAGACTTGGAGGT
63 TTCAAGGCCAGCTATATTGGACTTAAAGGT
**
2366737 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATATTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
*
2366802 AAGGCCAGCGATATTGGACTTAAAGGT
66 AAGGCCAGCTATATTGGACTTAAAGGT
* *
2366829 GCCAATGTGCTGATTCAAGGCCATCTACATTGGACTTAAAGATGAAGGTGCCAATATGTTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
2366894 AAGGCCAGCTATATTGGACTTAAAGGT
66 AAGGCCAGCTATATTGGACTTAAAGGT
*
2366921 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
2366986 AAGGCCAGCTATATTGGACTTAAAGGT
66 AAGGCCAGCTATATTGGACTTAAAGGT
*
2367013 GCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
*
2367078 AAGGCCAGCTATATTGGGCTTAGAAGG
66 AAGGCCAGCTATATTGGACTTA-AAGG
2367105 ATTGCCACCG
Statistics
Matches: 344, Mismatches: 23, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
92 302 0.88
93 4 0.01
95 38 0.11
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (92 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTGGACTTAAAGGT
Found at i:2366961 original size:184 final size:184
Alignment explanation
Indices: 2366531--2367104 Score: 788
Period size: 184 Copynumber: 3.0 Consensus size: 184
2366521 AAGATGAGAA
* * *
2366531 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCATT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGCCAAT
*
2366596 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATAAAGACGCCAATATGCTGATTCAAG
62 ATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-G-G-T------GCCAATGTGCTGATTCAAG
* * * * * * * * *
2366661 GCCAGCGATATAGGACTTAAGGGTGACAAATGCGCCAATATGCTGATTCAAGGCCAGCAATATTA
118 GCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTG
2366726 GACTT
180 GACTT
** **
2366731 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATAT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
2366796 TGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCATCTACATTG
66 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
*
2366861 GACTTAAAGATGAAGGTGCCAATATGTTGATTCAAGGCCAGCTATATTGGACTT
131 GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
2366915 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
2366980 TGATTTAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCTAGCTACATTG
66 TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
*
2367045 GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTT
131 GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
2367099 AGAAGG
1 A-AAGG
2367105 ATTGCCACCG
Statistics
Matches: 343, Mismatches: 30, Indels: 17
0.88 0.08 0.04
Matches are distributed among these distances:
184 212 0.62
185 4 0.01
187 37 0.11
193 1 0.00
194 1 0.00
195 1 0.00
196 41 0.12
198 1 0.00
199 42 0.12
200 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (184 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:2367227 original size:32 final size:32
Alignment explanation
Indices: 2367092--2367225 Score: 211
Period size: 32 Copynumber: 4.2 Consensus size: 32
2367082 CCAGCTATAT
*
2367092 TGGGC-TTAGA-AGGATTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
2367122 TGGGCTATAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
2367154 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
*
2367186 TGGGCTTT-GAGAAGGGTTGCCACCAACTTGTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
2367218 TGGGCTTT
1 TGGGCTTT
2367226 GAAAAAGGGT
Statistics
Matches: 97, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
30 5 0.05
31 7 0.07
32 85 0.88
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (32 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
Found at i:2367267 original size:34 final size:35
Alignment explanation
Indices: 2367238--2367438 Score: 105
Period size: 36 Copynumber: 5.9 Consensus size: 35
2367228 AAAAGGGTGA
2367238 AAGATGCCACGAAGTTATGGAC-TTAAAA-GGAAC
1 AAGATGCCACGAAGTTATGGACTTTAAAAGGGAAC
* * * *
2367271 AAGGTGCCACGAAGTTGTGGACTTTAAAAGAGAAA
1 AAGATGCCACGAAGTTATGGACTTTAAAAGGGAAC
* * *
2367306 AAGAGTGTCAC-AGAGTTGTGGGCTTTGAAAA--G---
1 AAGA-TGCCACGA-AGTTATGGACTTT-AAAAGGGAAC
* * ** *
2367338 AAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAA
1 AAGATGCCACGAAGTTATGGACTTTAAAAGGGAAC
* * ** *
2367373 AAGAGTGCCACGGAGTTGTGGAC-TTAAAAAAGAAA
1 AAGA-TGCCACGAAGTTATGGACTTTAAAAGGGAAC
* * * *
2367408 AAGGTGCCACGATGTTGTGGGCTTTGAAAAG
1 AAGATGCCACGAAGTTATGGACTTT-AAAAG
2367439 AAAAAGGTGC
Statistics
Matches: 133, Mismatches: 21, Indels: 25
0.74 0.12 0.14
Matches are distributed among these distances:
30 4 0.03
31 16 0.12
32 4 0.03
33 20 0.15
34 21 0.16
35 26 0.20
36 38 0.29
37 4 0.03
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.20
Consensus pattern (35 bp):
AAGATGCCACGAAGTTATGGACTTTAAAAGGGAAC
Found at i:2367348 original size:67 final size:67
Alignment explanation
Indices: 2367271--2367563 Score: 389
Period size: 67 Copynumber: 4.4 Consensus size: 67
2367261 TAAAAGGAAC
* * * *
2367271 AAGGTGCCACGAAGTTGTGGACTTTAAAAGAGAAAAAGAGTGTCACAGAGTTGTGGGCTTTGAAA
1 AAGGTGCCACGGAGTCGTGGACTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAAA
2367336 AG
66 AG
* * **
2367338 AAGGTGCCACGGAGTCGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAA
1 AAGGTGCCACGGAGTCGTGGACTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAAA
2367403 AG
66 AG
* * * *
2367405 AAAAAGGTGCCAC-GATGTTGTGGGCTTTGAAA-AGAAAAAG-GTGCCACAGAGTTGTGGGCTTT
1 ---AAGGTGCCACGGA-GTCGTGGACTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGACTTT
2367467 GAAAAG
62 GAAAAG
*
2367473 AAGGTGCCACGGAGTCGTGGAC-TTAAAAG-GAACAAAGAGTGCCACGGAGTTGTGGACTTTGAA
1 AAGGTGCCACGGAGTCGTGGACTTTAAAAGAGAA-AAAGAGTGCCACAGAGTTGTGGACTTTGAA
2367536 AAG
65 AAG
2367539 AAGGTGCCACGGAGTCGTGGACTTT
1 AAGGTGCCACGGAGTCGTGGACTTT
2367564 GATGCCACTG
Statistics
Matches: 196, Mismatches: 21, Indels: 18
0.83 0.09 0.08
Matches are distributed among these distances:
64 8 0.04
65 21 0.11
66 50 0.26
67 61 0.31
68 24 0.12
69 9 0.05
70 23 0.12
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.20
Consensus pattern (67 bp):
AAGGTGCCACGGAGTCGTGGACTTTAAAAGAGAAAAAGAGTGCCACAGAGTTGTGGACTTTGAAA
AG
Found at i:2367368 original size:135 final size:132
Alignment explanation
Indices: 2367228--2367563 Score: 462
Period size: 135 Copynumber: 2.5 Consensus size: 132
2367218 TGGGCTTTGA
** * * *
2367228 AAAAGGGTGAAAGA-TGCCACGAAGTTATGGACTTAAAAGGAACAAGGTGCCACGAAGTTGTGGA
1 AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAGGTGCCACGAAGTTGTGGA
*
2367292 CTTTAAAAGAGAAAAAGAGTGTCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTG
65 CTTTAAAA-AGAAAAAG-GTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTG
2367357 GACTTT
128 GAC-TT
*
2367363 AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAAAGAAAAAGGTGCCACGATGTTGTGG
1 AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGACTT--AAAAGAAAAAGGTGCCACGAAGTTGTGG
* *
2367428 GCTTTGAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGG
64 ACTTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGG
2367493 ACTT
129 ACTT
** * * *
2367497 AAAA-GGAACAAAGAGTGCCACGGAGTTGTGGACTTTGAA-AAGAAGGTGCCACGGAGTCGTGGA
1 AAAAGGGAA-AAAGAGTGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGAAGTTGTGGA
2367560 CTTT
65 CTTT
2367564 GATGCCACTG
Statistics
Matches: 181, Mismatches: 16, Indels: 12
0.87 0.08 0.06
Matches are distributed among these distances:
131 23 0.13
132 2 0.01
133 4 0.02
134 32 0.18
135 61 0.34
136 26 0.14
137 29 0.16
138 4 0.02
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (132 bp):
AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGAAGTTGTGGAC
TTTAAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAGGTGCCACGGAGTCGTGGAC
TT
Found at i:2367439 original size:34 final size:34
Alignment explanation
Indices: 2367237--2367565 Score: 310
Period size: 31 Copynumber: 9.8 Consensus size: 34
2367227 AAAAAGGGTG
* * *
2367237 AAAGATGCCACGAAGTTATGGAC-TT-AAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAA-GAA
* * *
2367270 CAAGGTGCCACGAAGTTGTGGACTTTAAAAGAGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAA-AGAA
* * *
2367305 AAAGAGTGTCACAGAGTTGTGGGCTTTGAAAAG--
1 AAAG-GTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
2367338 -AAGGTGCCACGGAGTCGTGGACTTT-AAAAGGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAA--GAA
**
2367372 AAAGAGTGCCACGGAGTTGTGGACTTAAAAAAGAA
1 AAAG-GTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
2367407 AAAGGTGCCAC-GATGTTGTGGGCTTTGAAAAGAA
1 AAAGGTGCCACGGA-GTTGTGGACTTTGAAAAGAA
* *
2367441 AAAGGTGCCACAGAGTTGTGGGCTTTGAAAAG--
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
2367473 -AAGGTGCCACGGAGTCGTGGAC-TT-AAAAGGAA
1 AAAGGTGCCACGGAGTTGTGGACTTTGAAAA-GAA
2367505 CAAAGAGTGCCACGGAGTTGTGGACTTTGAAAAG--
1 -AAAG-GTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
2367539 -AAGGTGCCACGGAGTCGTGGACTTTGA
1 AAAGGTGCCACGGAGTTGTGGACTTTGA
2367566 TGCCACTGAG
Statistics
Matches: 252, Mismatches: 23, Indels: 44
0.79 0.07 0.14
Matches are distributed among these distances:
29 4 0.02
30 7 0.03
31 60 0.24
32 7 0.03
33 22 0.09
34 58 0.23
35 41 0.16
36 45 0.18
37 8 0.03
ACGTcount: A:0.35, C:0.13, G:0.32, T:0.20
Consensus pattern (34 bp):
AAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
Found at i:2367576 original size:23 final size:23
Alignment explanation
Indices: 2367543--2367587 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
2367533 GAAAAGAAGG
2367543 TGCCACGGAGTCGTGGACTTTGA
1 TGCCACGGAGTCGTGGACTTTGA
*
2367566 TGCCACTGAGTCGTGGACTTTG
1 TGCCACGGAGTCGTGGACTTTG
2367588 GAAAGAGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.16, C:0.22, G:0.33, T:0.29
Consensus pattern (23 bp):
TGCCACGGAGTCGTGGACTTTGA
Found at i:2367600 original size:30 final size:30
Alignment explanation
Indices: 2367564--2367686 Score: 124
Period size: 30 Copynumber: 3.9 Consensus size: 30
2367554 CGTGGACTTT
2367564 GATGCCACTGAGTCGTGGACTTT-GGAAAGA
1 GATGCCACTGAGTCGTGGACTTTAGGAAA-A
* *
2367594 GATGCCACTGAATTGTGGACTTTTAGGACAAA
1 GATGCCACTGAGTCGTGGAC-TTTAGGA-AAA
*
2367626 -ATGCCACTGAGTCGTGGGCTTTGAGAAGAAAAA
1 GATGCCACTGAGTCGTGGACTTT-AG--G-AAAA
* *
2367659 GGTGCCACGGAGTCGTGGACTTTAGGAA
1 GATGCCACTGAGTCGTGGACTTTAGGAA
2367687 GGTATTTGAA
Statistics
Matches: 77, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
30 23 0.30
31 22 0.29
32 4 0.05
33 8 0.10
34 20 0.26
ACGTcount: A:0.28, C:0.16, G:0.32, T:0.24
Consensus pattern (30 bp):
GATGCCACTGAGTCGTGGACTTTAGGAAAA
Found at i:2369017 original size:13 final size:13
Alignment explanation
Indices: 2368999--2369024 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2368989 ACAAAGATCC
2368999 ATGTATCGATACA
1 ATGTATCGATACA
2369012 ATGTATCGATACA
1 ATGTATCGATACA
2369025 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2369020 original size:33 final size:33
Alignment explanation
Indices: 2368978--2369044 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2368968 AAAATTTTCA
***
2368978 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
2369011 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
2369044 A
1 A
2369045 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:2369088 original size:19 final size:18
Alignment explanation
Indices: 2369064--2369131 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
2369054 CAGTAGCTAA
2369064 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2369083 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
*
2369098 -T-TGTATTGATACAAAAC
1 TTATGTATCGATAC-AAAC
2369115 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
2369132 TTGTTGAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
13 10 0.24
14 1 0.02
16 2 0.05
18 4 0.10
19 24 0.59
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2369109 original size:32 final size:32
Alignment explanation
Indices: 2369067--2369129 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
2369057 TAGCTAATTA
*
2369067 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
*
2369099 TGTATTGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
2369130 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:2370012 original size:55 final size:55
Alignment explanation
Indices: 2369928--2370844 Score: 970
Period size: 55 Copynumber: 16.0 Consensus size: 55
2369918 ATAAAGTGTA
*** *
2369928 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
2369983 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * * *
2370038 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGAGCTTTAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* * * *
2370098 TCCCGCTCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
2370153 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* * *
2370214 TCCTACTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
2370269 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
*
2370330 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC--TTTGAAAGGCG
* * *
2370387 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* *
2370448 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* * * *
2370507 TCCCGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGATTTAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* * *
2370566 TCCCGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
2370621 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* *
2370682 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTATGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
2370737 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTCGAAAGGGG
1 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
2370792 TCATGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGG
2370845 AAAAAGCATC
Statistics
Matches: 761, Mismatches: 58, Indels: 86
0.84 0.06 0.10
Matches are distributed among these distances:
54 8 0.01
55 348 0.46
56 8 0.01
57 43 0.06
58 2 0.00
59 76 0.10
60 92 0.12
61 175 0.23
63 3 0.00
64 6 0.01
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:2370063 original size:26 final size:26
Alignment explanation
Indices: 2369974--2370063 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
2369964 GTGTGGGCTT
*
2369974 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGAGGAC
** * * *
2370000 TGAAAGGTG-CCACCAACTTGTGTGGGC
1 TGAAAGGTGTCCTGC-TCTT-TGAGGAC
*
2370027 TTTAAGAGGTGTCCTGCTCTTTGAGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGAGGAC
2370055 TGAAAGGTG
1 TGAAAGGTG
2370064 CCACCAACTT
Statistics
Matches: 46, Mismatches: 13, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
25 3 0.07
26 16 0.35
27 8 0.17
28 8 0.17
29 8 0.17
30 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGAGGAC
Found at i:2370273 original size:116 final size:115
Alignment explanation
Indices: 2369928--2370844 Score: 1204
Period size: 116 Copynumber: 8.0 Consensus size: 115
2369918 ATAAAGTGTA
** *
2369928 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* * *
2369988 CTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
66 CTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * * * *
2370038 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGAGCTTTAAAAGAAAAAGCATCCC
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
* *
2370102 GCTCTCTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
2370153 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCT
* *
2370218 ACTCTTTGAGGACTGGGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* *
2370269 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAGAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAA-AAGAAAAGGCGTCCT
* *
2370334 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTTTGAAAGGGG
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGC--TTTAAAAGGCG
* * * *
2370387 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCC
* *
2370451 TGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCA
64 TGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCG
* * * * *
2370507 TCCCGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGATTTAAAAGAAAAAGCATCCC
1 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
*
2370570 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
*
2370621 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCT
*
2370686 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTATGGGCTTTAAAAGGCG
65 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
2370737 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGC-TT---CG-AAAGGGGTCATG
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* * *
2370797 CTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
66 CTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGG
2370845 AAAAAGCATC
Statistics
Matches: 723, Mismatches: 58, Indels: 52
0.87 0.07 0.06
Matches are distributed among these distances:
109 6 0.01
110 89 0.12
111 1 0.00
114 26 0.04
115 127 0.18
116 270 0.37
117 24 0.03
118 105 0.15
119 51 0.07
120 24 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (115 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
CTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
Found at i:2370567 original size:468 final size:453
Alignment explanation
Indices: 2369928--2370838 Score: 1450
Period size: 468 Copynumber: 2.0 Consensus size: 453
2369918 ATAAAGTGTA
*
2369928 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTT
* ** *
2369993 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGA
66 TGAGGACTGAAAGGTGCCACCAACTTGGGTGGGCTTTAAGAGGCATCCCGCTCTTTGAGGACTGA
*
2370058 AAGGTGCCACCAACTTGTGTGAGCTTTAAAAGAAAAAGCATCCCGCTCTCTGAGGACTGGGAAGT
131 AAGGTGCCACCAACTTGTGTGAGATTTAAAAGAAAAAGCATCCCGCTCTCTGAGGACTGGGAAGT
2370123 GCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACT
196 GCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACT
*
2370188 TGTGTGGGCTTTAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGGGAAATGCCACCAACTTGTG
261 TGTGTGGGCTTTAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGGGAAATGCCACCAACTTGTA
2370253 TGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAA
326 TGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGC-TT--
* * *
2370318 GAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTTTGAA
388 --CGA-AAGGCGTCATGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTTTGAA
2370382 AGGGG
449 AGGGG
* * * *
2370387 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAG-----GCATCCT
2370452 GCTCTTTGAGGACTG-AAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCATCCCGCTCT
60 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGGGTGGGCTTT--AAG---AGGCATCCCGCTCT
* *
2370516 TTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGATTTAAAAGAAAAAGCATCCCGCTCTTTGAG
120 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGAGATTTAAAAGAAAAAGCATCCCGCTCTCTGAG
2370580 GACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAGGAAG
185 GACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAGGAAG
* * *
2370645 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAAGTGCC
250 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGGGAAATGCC
2370710 ACCAACTTGTATGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGT
315 ACCAACTTGTATGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGT
* *
2370775 GTGGGCTTCGAAAGGGGTCATGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
380 GTGGGCTTCGAAAGGCGTCATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
2370839 GAAAGGAAAA
Statistics
Matches: 419, Mismatches: 21, Indels: 21
0.91 0.05 0.05
Matches are distributed among these distances:
459 44 0.11
460 4 0.01
461 3 0.01
462 45 0.11
463 2 0.00
464 26 0.06
465 21 0.05
466 3 0.01
467 2 0.00
468 248 0.59
469 21 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (453 bp):
TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTT
TGAGGACTGAAAGGTGCCACCAACTTGGGTGGGCTTTAAGAGGCATCCCGCTCTTTGAGGACTGA
AAGGTGCCACCAACTTGTGTGAGATTTAAAAGAAAAAGCATCCCGCTCTCTGAGGACTGGGAAGT
GCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACT
TGTGTGGGCTTTAAAAGGAAAAGGCGTCCTACTCTTTGAGGACTGGGAAATGCCACCAACTTGTA
TGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTCGA
AAGGCGTCATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTTTGAAAGGGG
Found at i:2370844 original size:29 final size:29
Alignment explanation
Indices: 2370760--2370844 Score: 72
Period size: 29 Copynumber: 3.0 Consensus size: 29
2370750 GGACTAGGAA
*
2370760 GTGCCACCAACTTGTGTGGGCTTCGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAG
* * * *
2370789 GGGTCATGC-TCTT-TG-GGGAC--TGAAAG
1 GTGCCA-CCAACTTGTGTGGG-CTTTGAAAG
2370815 GTGCCACCAACTTGTGTGGGCTTTGAAAG
1 GTGCCACCAACTTGTGTGGGCTTTGAAAG
2370844 G
1 G
2370845 AAAAAGCATC
Statistics
Matches: 40, Mismatches: 9, Indels: 14
0.63 0.14 0.22
Matches are distributed among these distances:
25 1 0.03
26 12 0.30
27 6 0.15
28 6 0.15
29 14 0.35
30 1 0.03
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.26
Consensus pattern (29 bp):
GTGCCACCAACTTGTGTGGGCTTTGAAAG
Found at i:2371874 original size:12 final size:11
Alignment explanation
Indices: 2371861--2371899 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
2371851 TTTTTCTTTG
2371861 TTTTGTTTTTT
1 TTTTGTTTTTT
2371872 GTTTTGTTTTTT
1 -TTTTGTTTTTT
*
2371884 TTTTCTTTTTT
1 TTTTGTTTTTT
2371895 TTTTG
1 TTTTG
2371900 AAGAGAAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.00, C:0.03, G:0.10, T:0.87
Consensus pattern (11 bp):
TTTTGTTTTTT
Found at i:2371877 original size:17 final size:16
Alignment explanation
Indices: 2371851--2371898 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
2371841 CTTTTCTCTC
2371851 TTTTTC-TTTGTTTTGT
1 TTTTTCTTTTGTTTT-T
*
2371867 TTTTTGTTTTGTTTTT
1 TTTTTCTTTTGTTTTT
2371883 TTTTTCTTTT-TTTTT
1 TTTTTCTTTTGTTTTT
2371898 T
1 T
2371899 GAAGAGAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 6 0.21
16 15 0.52
17 8 0.28
ACGTcount: A:0.00, C:0.04, G:0.08, T:0.88
Consensus pattern (16 bp):
TTTTTCTTTTGTTTTT
Found at i:2384778 original size:20 final size:20
Alignment explanation
Indices: 2384751--2384805 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
2384741 TAAAATTTCC
*
2384751 AAATGTATCGATACAAAGAT
1 AAATGTATCGATACAAAGAA
** *
2384771 CCATGTATCGATACACAGAA
1 AAATGTATCGATACAAAGAA
2384791 AAATGTATCGATACA
1 AAATGTATCGATACA
2384806 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (20 bp):
AAATGTATCGATACAAAGAA
Found at i:2384849 original size:19 final size:18
Alignment explanation
Indices: 2384825--2384892 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
2384815 CAGTAGCTAA
2384825 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
2384844 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
2384859 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
*
2384876 TTATGTATTGATACAAA
1 TTATGTATCGATACAAA
2384893 TTGTTGAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.10
19 24 0.57
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:2384865 original size:13 final size:13
Alignment explanation
Indices: 2384847--2384871 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2384837 ACAATACTTA
2384847 TGTATCGATACAT
1 TGTATCGATACAT
2384860 TGTATCGATACA
1 TGTATCGATACA
2384872 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2384869 original size:32 final size:32
Alignment explanation
Indices: 2384828--2384890 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
2384818 TAGCTAATTA
*
2384828 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
*
2384860 TGTATCGATACAAAACTTATGTATTGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
2384891 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:2385898 original size:21 final size:20
Alignment explanation
Indices: 2385873--2385917 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
2385863 TGAAAAGGGG
2385873 TTTTTCCCTTCTTCTTCTTTT
1 TTTTTCCCTTCTTCTT-TTTT
***
2385894 TTTTTTGTTTCTTCTTTTTT
1 TTTTTCCCTTCTTCTTTTTT
2385914 TTTT
1 TTTT
2385918 CCTTTTTTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTTTCCCTTCTTCTTTTTT
Found at i:2385930 original size:19 final size:18
Alignment explanation
Indices: 2385884--2385918 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
2385874 TTTTCCCTTC
*
2385884 TTCTTCTTTTTTTTTTGT
1 TTCTTCTTTTTTTTTTCT
2385902 TTCTTCTTTTTTTTTTC
1 TTCTTCTTTTTTTTTTC
2385919 CTTTTTTGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.83
Consensus pattern (18 bp):
TTCTTCTTTTTTTTTTCT
Found at i:2386209 original size:9 final size:9
Alignment explanation
Indices: 2386195--2386263 Score: 99
Period size: 9 Copynumber: 7.9 Consensus size: 9
2386185 TTCTGTGTGT
2386195 TTTTTTTTG
1 TTTTTTTTG
2386204 TTTTTTTTG
1 TTTTTTTTG
2386213 -TTTTTTTG
1 TTTTTTTTG
2386221 --TTTTTTG
1 TTTTTTTTG
*
2386228 TTTTTTTGTT
1 TTTTTTT-TG
2386238 TTTTTTTTG
1 TTTTTTTTG
2386247 TTTTTTTTG
1 TTTTTTTTG
2386256 TTTTTTTT
1 TTTTTTTT
2386264 TCATCACTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
7 7 0.13
8 8 0.15
9 32 0.58
10 8 0.15
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:2386275 original size:34 final size:34
Alignment explanation
Indices: 2386204--2386277 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
2386194 TTTTTTTTTG
** ***
2386204 TTTTTTTTGTTTTTTTGTTTTTTGTTTTTTTGTT
1 TTTTTTTTGTTTTTTTGTTTTTTGTTTCATCACT
2386238 TTTTTTTTGTTTTTTTTGTTTTTT-TTTCATCACT
1 TTTTTTTTG-TTTTTTTGTTTTTTGTTTCATCACT
2386272 TTTTTT
1 TTTTTT
2386278 AAAGGAACTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
34 20 0.59
35 14 0.41
ACGTcount: A:0.03, C:0.04, G:0.08, T:0.85
Consensus pattern (34 bp):
TTTTTTTTGTTTTTTTGTTTTTTGTTTCATCACT
Found at i:2386275 original size:43 final size:43
Alignment explanation
Indices: 2386194--2386277 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
2386184 TTTCTGTGTG
* ***
2386194 TTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTTTGT
1 TTTTTTTTTGTTTTTTTTGTTTTTTTGTTATCACTTTTTTTGT
2386237 TTTTTTTTTGTTTTTTTTGTTTTTTT-TTCATCACTTTTTTT
1 TTTTTTTTTGTTTTTTTTGTTTTTTTGTT-ATCACTTTTTTT
2386278 AAAGGAACTC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 34 0.94
ACGTcount: A:0.02, C:0.04, G:0.08, T:0.86
Consensus pattern (43 bp):
TTTTTTTTTGTTTTTTTTGTTTTTTTGTTATCACTTTTTTTGT
Found at i:2386277 original size:1 final size:1
Alignment explanation
Indices: 2386194--2386264 Score: 79
Period size: 1 Copynumber: 71.0 Consensus size: 1
2386184 TTTCTGTGTG
* * * * * * *
2386194 TTTTTTTTTGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTTTGTTTTTTTTTTGTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2386259 TTTTTT
1 TTTTTT
2386265 CATCACTTTT
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (1 bp):
T
Found at i:2393254 original size:52 final size:52
Alignment explanation
Indices: 2393176--2393304 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
2393166 CGAAATATGA
* *
2393176 AAATTTACCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
*
2393228 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
*
2393280 AAATTTGCCTGCATGTATAGATACA
1 AAATTTGCCTGCATGTATCGATACA
2393305 AAGATCAATG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:2393315 original size:52 final size:52
Alignment explanation
Indices: 2393176--2393324 Score: 194
Period size: 52 Copynumber: 2.9 Consensus size: 52
2393166 CGAAATATGA
* * * *
2393176 AAATTTACCTGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATAGATACA-TAAGATAATGTATCGATACATCTGGGC
* ***
2393228 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATAGATACATAAGATAATGTATCGATACATCTGGGC
2393280 AAATTTGCCTGCATGTATAGATACA-AAGATCAATGTATCGATACA
1 AAATTTGCCTGCATGTATAGATACATAAGAT-AATGTATCGATACA
2393325 ATGTATCGAT
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 4 0.05
52 84 0.95
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATAGATACATAAGATAATGTATCGATACATCTGGGC
Done.