Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold16
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5287347
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 8769 characters in sequence are not A, C, G, or T
File 21 of 35
Found at i:3283910 original size:87 final size:87
Alignment explanation
Indices: 3283767--3283926 Score: 214
Period size: 87 Copynumber: 1.8 Consensus size: 87
3283757 GATATGCGTG
* * ** **
3283767 AAATGATGCAAATGCAAGCATTAATAAAGTGGCAAATGCTTATGAAGTGATGCAAATACCAATGT
1 AAATGATGCAAATGCAAGCATAAATAAAGTAGCAAATGCACATGAAACGATGCAAATACCAATGT
3283832 CATCTAAAATGCAAATATAGGTA
66 CATC-AAAATGCAAATATAGGTA
* * *
3283855 AAATGATGCAAATGCAGGGATAAATAAA-TAGCAAATGCACATGAAACGATGCAAATACGAATGT
1 AAATGATGCAAATGCAAGCATAAATAAAGTAGCAAATGCACATGAAACGATGCAAATACCAATGT
*
3283919 TATCAAAA
66 CATCAAAA
3283927 CTACGAATGT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
86 4 0.06
87 33 0.53
88 25 0.40
ACGTcount: A:0.47, C:0.12, G:0.18, T:0.23
Consensus pattern (87 bp):
AAATGATGCAAATGCAAGCATAAATAAAGTAGCAAATGCACATGAAACGATGCAAATACCAATGT
CATCAAAATGCAAATATAGGTA
Found at i:3285032 original size:28 final size:28
Alignment explanation
Indices: 3284998--3285596 Score: 561
Period size: 28 Copynumber: 21.1 Consensus size: 28
3284988 TTCAAAAGAT
* * *
3284998 CACAAGTTAGTGGTATCCTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
*
3285026 CATAAGTCAGTGGCACCCTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* * * **
3285054 CACAAGTTAATAGCACCCTTTTGAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
*
3285082 CACAAGTCAGTGGCATCCTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* * * *
3285110 CATAAGTTAGTGGCA-TCTCTTCAAAAGAC
1 CACAAGTCAGTGGCACCCT-TTC-AAAGCC
*
3285139 CACAAGTTAGTGGCACACCCTTT------C
1 CACAAGTCAGTGG--CACCCTTTCAAAGCC
**
3285163 CACAAGTCAGTGGCACTGTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
*
3285191 CACAAGTTAGTGGCACCCTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
3285219 CACAAGTCAGTGGCATACCCTTTCAAAGCC
1 CACAAGTCAGTGGC--ACCCTTTCAAAGCC
*
3285249 TACACAAATCAGTGGCA-CCTTTCCAAAGCC
1 --CACAAGTCAGTGGCACCCTTT-CAAAGCC
* *
3285279 CACAAGTTAGTGGTACCCTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* *
3285307 CACAAGTCAGTGGAACCCTTCCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* * *
3285335 CATAAGTTAGTGGCACTCTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* *
3285363 CACAAGTCAGTGGCACCCTTCCAAAGCT
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* * *
3285391 CACAAGTTAGTAGCACTCTTTCAAAGCC
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* * * *
3285419 CACAAGTCAGTGGCACCTTTTTTATAGGC
1 CACAAGTCAGTGGCACC-CTTTCAAAGCC
* *
3285448 CACAAGTCAATGGTAGCCCTTT-AAAGCC
1 CACAAGTCAGTGGCA-CCCTTTCAAAGCC
* * *
3285476 CACAAGTTAATGGCACTCTTTCAAAG-C
1 CACAAGTCAGTGGCACCCTTTCAAAGCC
* *
3285503 CAGAAGTCAGTGGCATACCCTTTGAAAGCC
1 CACAAGTCAGTGGC--ACCCTTTCAAAGCC
**
3285533 CACAAGTTGGTGGCACCCTTTCAAAGCCC
1 CACAAGTCAGTGGCACCCTTTCAAAG-CC
* *
3285562 ACACAAGTCGGTGGCAACTCTTTTCAAAGCC
1 -CACAAGTCAGTGGC-AC-CCTTTCAAAGCC
3285593 CACA
1 CACA
3285597 TAAGTTAGTG
Statistics
Matches: 467, Mismatches: 77, Indels: 52
0.78 0.13 0.09
Matches are distributed among these distances:
22 6 0.01
24 13 0.03
27 19 0.04
28 282 0.60
29 62 0.13
30 53 0.11
31 8 0.02
32 24 0.05
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.23
Consensus pattern (28 bp):
CACAAGTCAGTGGCACCCTTTCAAAGCC
Found at i:3285790 original size:49 final size:45
Alignment explanation
Indices: 3285689--3285809 Score: 136
Period size: 49 Copynumber: 2.6 Consensus size: 45
3285679 TTCGATATTA
* *
3285689 CTAGCATTGAATCAGCATATTGGCACTTTTATTAGCCCAATGTCG
1 CTAGCCTTGAATCAGCACATTGGCACTTTTATTAGCCCAATGTCG
* *
3285734 CTGGCCTTGAATCAGCACATTGGTCCACTTTTCCCTTAGCCCCAA-GTCG
1 CTAGCCTTGAATCAGCACATTGG--CACTTTT--ATTAG-CCCAATGTCG
**
3285783 CTAGCCTTGAATTGGCACATTGGCACT
1 CTAGCCTTGAATCAGCACATTGGCACT
3285810 CCTCCCATCT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
45 20 0.31
47 11 0.17
49 28 0.44
50 5 0.08
ACGTcount: A:0.22, C:0.28, G:0.19, T:0.31
Consensus pattern (45 bp):
CTAGCCTTGAATCAGCACATTGGCACTTTTATTAGCCCAATGTCG
Found at i:3290586 original size:181 final size:181
Alignment explanation
Indices: 3290282--3290644 Score: 663
Period size: 181 Copynumber: 2.0 Consensus size: 181
3290272 GTCGCCAGGC
*
3290282 CTTACCCTCAAGTCATTCTAAATTAAATCTGGGGCAATGCCACAAGATCGCCCTACAACAGCATC
1 CTTACCCTCAAGTCATTCTAAATCAAATCTGGGGCAATGCCACAAGATCGCCCTACAACAGCATC
3290347 ATGATCTCAATCCCTAGTCCTATGTTTTCACCTTACATTTCCAAAGGAATTTTCTTCAAGAGATA
66 ATGATCTCAATCCCTAGTCCTATGTTTTCACCTTACATTTCCAAAGGAATTTTCTTCAAGAGATA
*
3290412 GTTCTTCAGTTCACAAGGTCGTGTTTGAAATGAGAAATGGCCTTCTTTTAT
131 GTTCTTCAGTACACAAGGTCGTGTTTGAAATGAGAAATGGCCTTCTTTTAT
* **
3290463 CTTACCCTCAAGTCATTCTAAATCAAATTTGGGGCAATGCCACAAGATCGCCCTACAGTAGCATC
1 CTTACCCTCAAGTCATTCTAAATCAAATCTGGGGCAATGCCACAAGATCGCCCTACAACAGCATC
*
3290528 ATGATCTCAATCCCTAGTCCTATGTTTTCACCTTACATTTCTAAAGGAATTTTCTTCAAGAGATA
66 ATGATCTCAATCCCTAGTCCTATGTTTTCACCTTACATTTCCAAAGGAATTTTCTTCAAGAGATA
*
3290593 GTTCTTTAGTACACAAGGTCGTGTTTGAAATGAGAAATGGCCTTCTTTTAT
131 GTTCTTCAGTACACAAGGTCGTGTTTGAAATGAGAAATGGCCTTCTTTTAT
3290644 C
1 C
3290645 ATCTTCTCAC
Statistics
Matches: 175, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
181 175 1.00
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (181 bp):
CTTACCCTCAAGTCATTCTAAATCAAATCTGGGGCAATGCCACAAGATCGCCCTACAACAGCATC
ATGATCTCAATCCCTAGTCCTATGTTTTCACCTTACATTTCCAAAGGAATTTTCTTCAAGAGATA
GTTCTTCAGTACACAAGGTCGTGTTTGAAATGAGAAATGGCCTTCTTTTAT
Found at i:3292279 original size:62 final size:61
Alignment explanation
Indices: 3292151--3292300 Score: 246
Period size: 62 Copynumber: 2.4 Consensus size: 61
3292141 CTCTTTTTGC
* * *
3292151 CCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAATTGGTGGCA
* *
3292212 CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTAAAGCCCACACAAATTGGTGGCA
1 CCTTCTAGTCCTCAAAGAGCAGGACGCC-TTTTCCTTTCAAAGCCCACACAAATTGGTGGCA
3292274 CCTTCTAGTCCTCAAAGAGCAGGACGC
1 CCTTCTAGTCCTCAAAGAGCAGGACGC
3292301 TCTCTCCTTT
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
61 27 0.33
62 56 0.67
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (61 bp):
CCTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAATTGGTGGCA
Found at i:3292406 original size:61 final size:61
Alignment explanation
Indices: 3292339--3292517 Score: 252
Period size: 61 Copynumber: 2.9 Consensus size: 61
3292329 GAGCAGGACA
* * *
3292339 CCTTTCAAAGCCCACACAAGTTGGAGGCACCTTTCAGTCCTTAAAGAGCAAGACGCC-TTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACGCCTTTTT
* *
3292400 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAAGAGCAGGACGCCTTTTT
* * *
3292462 TCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAAGCAGGACGC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTC-AGTCCTCAAAGAGCAGGACGC
3292518 TCTCTCCTTT
Statistics
Matches: 105, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
61 53 0.50
62 52 0.50
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (61 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCTTTTT
Found at i:3292501 original size:62 final size:61
Alignment explanation
Indices: 3292339--3292517 Score: 252
Period size: 62 Copynumber: 2.9 Consensus size: 61
3292329 GAGCAGGACA
* * *
3292339 CCTTTCAAAGCCCACACAAGTTGGAGGCACCTT-TCAGTCCTTAAAGAGCAAGACGCCTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGACGCCTTTT
* * *
3292400 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCC-TTTT
* * *
3292462 TCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAAGCAGGACGC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGC
3292518 TCTCTCCTTT
Statistics
Matches: 104, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
61 50 0.48
62 54 0.52
ACGTcount: A:0.26, C:0.31, G:0.20, T:0.23
Consensus pattern (61 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGACGCCTTTT
Found at i:3292531 original size:217 final size:217
Alignment explanation
Indices: 3292151--3292726 Score: 882
Period size: 217 Copynumber: 2.7 Consensus size: 217
3292141 CTCTTTTTGC
* *
3292151 CCTTCCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCTT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
* *
3292216 CTAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTAAAGCCCACACAAATTGGTGGCACCTTCTA
66 CCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTA
*
3292281 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCACCCTTTAATCCTCAAAGAGCAGGACACCTTTCA
131 GTCCTCAAAAAGCAGGACGCTCTCTCCTTTCACCCTTTAATCCTCAAAGAGCAGGACACCTTTCA
3292346 AAGCCCACACAAGTTGGAGGCA
196 AAGCCCACACAAGTTGGAGGCA
* * *
3292368 CCTTTCAGTCCTTAAAGAGCAAGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCCT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
3292433 CCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTA
66 CCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTA
* *
3292498 GTCCTCAAAAAGCAGGACGCTCTCTCCTTTCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTCA
131 GTCCTCAAAAAGCAGGACGCTCTCTCCTTTCACCCTTTAATCCTCAAAGAGCAGGACACCTTTCA
* *
3292563 AAGCCCACACTAGTTGGTGGCA
196 AAGCCCACACAAGTTGGAGGCA
* *
3292585 CCTTTCAGTCCTCAAAGAGCAGGACACC---T--TTT-AAAGCCCACACGAGCTGGTGGCA-CAT
1 CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
* * * * **
3292643 TCAGTCCTCAAAGAGCAGGACG-CATTCTCCTTTTAAAGCCTTCACAAGTTGGTGGCA-CTTCCT
66 CCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CT
* *
3292706 AGTCCTCGAAAGGCAGGACGC
130 AGTCCTCAAAAAGCAGGACGC
3292727 CTTTTCCTTT
Statistics
Matches: 334, Mismatches: 24, Indels: 10
0.91 0.07 0.03
Matches are distributed among these distances:
208 3 0.01
209 51 0.15
210 23 0.07
211 22 0.07
212 3 0.01
214 1 0.00
217 231 0.69
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (217 bp):
CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACCAT
CCAGTCCTCAAAGAGCAGGACGCCTTTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTA
GTCCTCAAAAAGCAGGACGCTCTCTCCTTTCACCCTTTAATCCTCAAAGAGCAGGACACCTTTCA
AAGCCCACACAAGTTGGAGGCA
Found at i:3292585 original size:156 final size:148
Alignment explanation
Indices: 3292400--3292675 Score: 392
Period size: 156 Copynumber: 1.8 Consensus size: 148
3292390 GACGCCTTTT
*
3292400 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTTCT
1 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGAC-AC------CT
* *
3292465 TTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAAGCAGGACGC-TCTCTCCTTTC
59 TTTAAAGCCCACACAAGCTGGTGGCACATTC-AGTCCTCAAAAAGCAGGACGCAT-TCTCCTTTC
3292529 ACCCTTTAGTCCTCAAAGAGCAGGACG
122 ACCCTTTAGTCCTCAAAGAGCAGGACG
* * *
3292556 CCTTTCAAAGCCCACACTAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAG
1 CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAG
* *
3292621 CCCACACGAGCTGGTGGCACATTCAGTCCTCAAAGAGCAGGACGCATTCTCCTTT
66 CCCACACAAGCTGGTGGCACATTCAGTCCTCAAAAAGCAGGACGCATTCTCCTTT
3292676 TAAAGCCTTC
Statistics
Matches: 111, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
148 28 0.25
149 31 0.28
155 1 0.01
156 51 0.46
ACGTcount: A:0.25, C:0.32, G:0.20, T:0.24
Consensus pattern (148 bp):
CCTTTCAAAGCCCACACGAGTTGGTGGCACCCTCCAGTCCTCAAAGAGCAGGACACCTTTTAAAG
CCCACACAAGCTGGTGGCACATTCAGTCCTCAAAAAGCAGGACGCATTCTCCTTTCACCCTTTAG
TCCTCAAAGAGCAGGACG
Found at i:3292735 original size:61 final size:61
Alignment explanation
Indices: 3292535--3293072 Score: 486
Period size: 61 Copynumber: 9.3 Consensus size: 61
3292525 TTTCACCCTT
*
3292535 TAGTCCTCAAAGAGCAGGACGCC-TTT-C----AAAGCCCACACTAGTTGGTGGCACCTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTC
* * * *
3292591 -AGTCCTCAAAGAGCAGGA---C---ACCTTTTAAAGCCCACACGAGCTGGTGGCACATTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC
* * ** *
3292645 -AGTCCTCAAAGAGCAGGACGCATTCTCCTTTTAAAGCCTTCACAAGTTGGTGGCACTTCC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC
* *
3292705 TAGTCCTCGAAAG-GCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTC
1 TAGTCCTC-AAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC
* * * * *
3292766 CAGTCCTCAAAGAGCAGGGCGCC-TTT-C----AAAGCCAACACAAG-T--TGGCATTTTTT
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTC
* * * *
3292819 TAGTCTTCAAAGAGCA--A-G---ATGCCTTTTAAAGCCCACACATGTTGGTGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTC
* *
3292875 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTC
*
3292937 -AGTCCTCAAAGAGCAGGACG------CCTTTTAAAGCCCACACATGTTGGTGGCACTTTTC
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTC
* * *
3292992 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTTT-
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC
* *
3293052 TCAATCCTCAAAGAGTAGGAC
1 T-AGTCCTCAAAGAGCAGGAC
3293073 ACACTTCCTT
Statistics
Matches: 395, Mismatches: 47, Indels: 75
0.76 0.09 0.15
Matches are distributed among these distances:
48 1 0.00
49 1 0.00
50 1 0.00
51 1 0.00
52 6 0.02
53 30 0.08
54 25 0.06
55 83 0.21
56 42 0.11
58 1 0.00
59 2 0.01
60 36 0.09
61 102 0.26
62 63 0.16
63 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (61 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC
Found at i:3292924 original size:170 final size:170
Alignment explanation
Indices: 3292535--3293072 Score: 600
Period size: 170 Copynumber: 3.1 Consensus size: 170
3292525 TTTCACCCTT
*
3292535 TAGTCCTCAAAGAGCAGGACG------CCTTTCAAAGCCCACACTAGTTGGTGGCACCTTTCAGT
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * ** *
3292594 CCTCAAAGAGCAGGACACCTTTTAAAGCCCACACGAGCTGGTGGCA-CATTCAGTCCTCAAAGAG
66 CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCT-GTGGCATTTTTTAGTCCTCAAAGAG
* *
3292658 CAGGACGCATTCTCCTTTTAAAGCCTTCACA-AGTTGGTGGCAC-TTCC
130 CA--A-G-A-T-GCCTTTTAAAGCC--CACACAGTTGGTGGCACTTTTC
*
3292705 TAGTCCTCGAAAG-GCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCA
1 TAGTCCTC-AAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CA
* * * *
3292768 GTCCTCAAAGAGCAGGGCGCCTTTCAAAGCCAACACAAG-T-TGGCATTTTTTTAGTCTTCAAAG
64 GTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCTGTGGCA-TTTTTTAGTCCTCAAAG
3292831 AGCAAGATGCCTTTTAAAGCCCACACATGTTGGTGGCACTTTTC
128 AGCAAGATGCCTTTTAAAGCCCACACA-GTTGGTGGCACTTTTC
*
3292875 TAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * *
3292940 CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACATGTTGGTGGCACTTTTCTAGTCCTCAAAGA
66 CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCT-GTGGCA-TTTTTTAGTCCTCAAAGA
*
3293005 GCAGGATGCCTTTTCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTC
129 GCAAGATGCC---T--TTT-AAAGCCCACAC-AGTTGGTGGCACTTTTC
* *
3293054 -AATCCTCAAAGAGTAGGAC
1 TAGTCCTCAAAGAGCAGGAC
3293073 ACACTTCCTT
Statistics
Matches: 317, Mismatches: 26, Indels: 42
0.82 0.07 0.11
Matches are distributed among these distances:
167 4 0.01
168 1 0.00
169 27 0.09
170 107 0.34
171 9 0.03
172 1 0.00
173 36 0.11
175 20 0.06
176 65 0.21
178 19 0.06
179 27 0.09
180 1 0.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (170 bp):
TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
CCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGCTGTGGCATTTTTTAGTCCTCAAAGAGC
AAGATGCCTTTTAAAGCCCACACAGTTGGTGGCACTTTTC
Found at i:3292943 original size:231 final size:225
Alignment explanation
Indices: 3292536--3293017 Score: 607
Period size: 231 Copynumber: 2.1 Consensus size: 225
3292526 TTCACCCTTT
* *
3292536 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACTAGTTGGTGGCACCTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCAACACAAGTT-GTGGCACCTTTCAGTCCTCAAA
*
3292601 GAGCAGGACACCTTTTAAAGCCCACACGAGCTGGTGGCACATTCAGTCCTCAAAGAGCAGGACGC
65 GAGCAAGACACCTTTTAAAGCCCACACGAGCTGGTGGCACATTCAGTCCTCAAAGAGCAGGACGC
* **
3292666 ATTCTCCTTTTAAAGCCTTCACAAGTTGGTGGCACTTCCTAGTCCTCGAAAG-GCAGGACGCCTT
130 ATTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTC-AAAGAGCAGGACGCC--
3292730 TTCCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
192 -T--TTT-AAAGCCCACACAAGTTGGTGGCACTTTTCC
* ** * *
3292767 AGTCCTCAAAGAGCAGGGCGCCTTTCAAAGCCAACACAAG-T-TGGCATTTTTTTAGTCTTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCAACACAAGTTGTGGCA-CCTTTCAGTCCTCAAA
** * *
3292830 GAGCAAGATGCCTTTTAAAGCCCACAC-ATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGA
65 GAGCAAGACACCTTTTAAAGCCCACACGA-GCTGGTGGCAC-ATTC-AGTCCTCAAAGAGCAGGA
* * * *
3292894 TGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGACGC
127 CGCATTCTCCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACGC
* *
3292958 CTTTTAAAGCCCACACATGTTGGTGGCACTTTTCT
191 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCC
*
3292993 AGTCCTCAAAGAGCAGGATGCCTTT
1 AGTCCTCAAAGAGCAGGACGCCTTT
3293018 TCCTTTCAAA
Statistics
Matches: 221, Mismatches: 23, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
225 22 0.10
226 31 0.14
228 7 0.03
229 46 0.21
230 8 0.04
231 103 0.47
232 4 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (225 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCAACACAAGTTGTGGCACCTTTCAGTCCTCAAAG
AGCAAGACACCTTTTAAAGCCCACACGAGCTGGTGGCACATTCAGTCCTCAAAGAGCAGGACGCA
TTCTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGCCTTTT
AAAGCCCACACAAGTTGGTGGCACTTTTCC
Found at i:3292991 original size:117 final size:117
Alignment explanation
Indices: 3292556--3293072 Score: 614
Period size: 117 Copynumber: 4.5 Consensus size: 117
3292546 GAGCAGGACG
* *
3292556 CCTTTCAAAGCCCACACTAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTTAAAG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
* * * * *
3292621 CCCACACGA-GCTGGTGGCAC-ATTC-AGTCCTCAAAGAGCAGGACGCATTCT
66 CCCACAC-ATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** *
3292671 CCTTTTAAAGCCTTCACAAGTTGGTGGCA-CTTCCTAGTCCTCGAAAG-GCAGGACGCCTTTTCC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTC-AAAGAGCAGGACGCC---T--
* * *
3292734 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGG--G-C---G
59 TTT-AAAGCCCACACATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTT
* ** * * * *
3292787 CCTTTCAAAGCCAACACAAG-T--TGGCATTTTTTTAGTCTTCAAAGAGCAAGATGCCTTTTAAA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAA
3292849 GCCCACACATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTT
65 GCCCACACATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTT
3292902 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
3292967 CCCACACATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTT
66 CCCACACATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTT
* * * *
3293019 CCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTCAATCCTCAAAGAGTAGGAC
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGAC
3293073 ACACTTCCTT
Statistics
Matches: 345, Mismatches: 33, Indels: 46
0.81 0.08 0.11
Matches are distributed among these distances:
108 22 0.06
109 25 0.07
111 2 0.01
112 1 0.00
113 9 0.03
114 18 0.05
115 63 0.18
116 22 0.06
117 132 0.38
118 6 0.02
120 5 0.01
121 23 0.07
122 17 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (117 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTTAAAG
CCCACACATGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGATGCCTTTT
Found at i:3293159 original size:42 final size:42
Alignment explanation
Indices: 3293056--3293189 Score: 124
Period size: 42 Copynumber: 3.1 Consensus size: 42
3293046 CACTTTTCAA
* * ** *
3293056 TCCTCAAAGAGTAGGACACACTTCCTTCCCTTCTTTTCTCTTTTG
1 TCCTCAAAGAGCAGGACGCACTTTATTTCC--CTTTT-TCTTTTG
*
3293101 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTTCTTTTG
1 TCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTTG
* * * * * * *
3293143 TCCTCAGAGAGTAGGACGTATTTTGTTTCCCTTTTTCCTTTA
1 TCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTTG
3293185 TCCTC
1 TCCTC
3293190 GAAAAATGGG
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
42 46 0.61
43 5 0.07
45 24 0.32
ACGTcount: A:0.17, C:0.27, G:0.13, T:0.43
Consensus pattern (42 bp):
TCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTTG
Found at i:3293823 original size:19 final size:21
Alignment explanation
Indices: 3293780--3293831 Score: 72
Period size: 19 Copynumber: 2.6 Consensus size: 21
3293770 TTTAATAATT
*
3293780 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTAAGTAAA
*
3293801 TGTATCGATAGA-TAAGT-AA
1 TGTATCGATACATTAAGTAAA
3293820 TGTATCGATACA
1 TGTATCGATACA
3293832 GTGTATCGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 13 0.46
20 4 0.14
21 11 0.39
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTAAA
Found at i:3296343 original size:51 final size:51
Alignment explanation
Indices: 3296219--3296502 Score: 369
Period size: 51 Copynumber: 5.6 Consensus size: 51
3296209 TTAAGTTTTT
* *
3296219 CAATTTTTCATAATCGGAGG-TACTCCAAC-CCTGGTTTTA-TTTCTAAAACAC
1 CAATTTTCCATAATCGG-GGATACTCCAACTCC-GATTTTATTTTC-AAAACAC
* * * *
3296270 TAA-TTTCCACAATCGGGGATACTCTAACTCCGATTTTATTTTCGAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACAC
* * * *
3296320 CAATTTTCCACAACCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACAC
* *
3296371 CAATTTTCTATAATCAGGGATACTCCAACTCCGATTTTATTTTCAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACAC
* *
3296422 CAATTTTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACAC
1 CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTTC-AAAACAC
*
3296474 CAATTTTTCATAATCGGGGATACTCCAAC
1 CAATTTTCCATAATCGGGGATACTCCAAC
3296503 CCCGTTAATC
Statistics
Matches: 206, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
49 2 0.01
50 33 0.16
51 137 0.67
52 34 0.17
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (51 bp):
CAATTTTCCATAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACAC
Found at i:3296517 original size:27 final size:27
Alignment explanation
Indices: 3296486--3296561 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 27
3296476 ATTTTTCATA
3296486 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
3296513 ATCGGGGATACTCCAACCCCGTTATTT
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
3296540 TTGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
3296562 ACTTTATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 26 0.59
28 18 0.41
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:3296596 original size:79 final size:79
Alignment explanation
Indices: 3296513--3296716 Score: 345
Period size: 79 Copynumber: 2.6 Consensus size: 79
3296503 CCCGTTAATC
*
3296513 ATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGACTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCTAAAAT
*
3296578 ATTGATTTCTCATA
66 ATTGATTTCTCACA
* **
3296592 ATCGGGAATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCTAAAAT
3296657 ATTGATTTCTCACA
66 ATTGATTTCTCACA
* *
3296671 ATCGGGGATACTCCAACCCCGTTATTTTCGCGGGGATACTACAACC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACC
3296717 TCGTTATTTT
Statistics
Matches: 117, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 117 1.00
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCTAAAAT
ATTGATTTCTCACA
Found at i:3296630 original size:107 final size:107
Alignment explanation
Indices: 3296437--3296640 Score: 277
Period size: 106 Copynumber: 1.9 Consensus size: 107
3296427 TTCTATAATC
* * * *
3296437 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAATTTCTCATAATCGGGAATACTCCAA
3296502 CCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTTGA
66 CCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTTGA
* * ***
3296544 GGGGATACTCCAACCCCGACTTTA-TTCCTAAAATATTGATTTCTCATAATCGGGAATACTCCAA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAATTTCTCATAATCGGGAATACTCCAA
**
3296608 CCCCGTT-ATTTTCGAGGGGATACTCCAACCCCG
66 CCCCGTTAATCATC--GGGGATACTCCAACCCCG
3296641 GTTTTATTCC
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
105 4 0.05
106 40 0.48
107 40 0.48
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAAACACCAATTTCTCATAATCGGGAATACTCCAA
CCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTTGA
Found at i:3296715 original size:28 final size:28
Alignment explanation
Indices: 3296673--3296745 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
3296663 TTCTCACAAT
3296673 CGGGGATACTCCAACCCCGTTATTTTCG
1 CGGGGATACTCCAACCCCGTTATTTTCG
* * *
3296701 CGGGGATACTACAACCTCGTTATTTTTG
1 CGGGGATACTCCAACCCCGTTATTTTCG
*
3296729 AGGGGATACTCCAACCC
1 CGGGGATACTCCAACCC
3296746 TGATTTTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.27
Consensus pattern (28 bp):
CGGGGATACTCCAACCCCGTTATTTTCG
Found at i:3296780 original size:186 final size:186
Alignment explanation
Indices: 3296437--3296799 Score: 457
Period size: 186 Copynumber: 2.0 Consensus size: 186
3296427 TTCTATAATC
* * *
3296437 GGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAA
* *
3296502 CCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGACTTT
66 CCCCGTTAATCAGCGGGGATACTACAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGACTTT
* **
3296567 ATTCCTAAAATATTGATTTCTCATAATC-GGGAATACTCCAACCCCGTTATTTTCGA
131 ATTCCTAAAACACCGATTTCTCATAATCAGGG-ATACTCCAACCCCGTTATTTTCGA
* * * ***
3296623 GGGGATACTCCAACCCCGGTTTTA-TTCCTAAAATATTGATTTCTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAA
* * * *
3296687 CCCCGTTATTTTC-GCGGGGATACTACAACCTCGTTATTTTTGAGGGGATACTCCAACCCTGATT
66 CCCCGTTA--ATCAGCGGGGATACTACAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGACT
* * *
3296751 TTATTTCC-AGAACACCGATTT-TCCATAATCAGGGGTACTCCAGCCCCGT
129 TTA-TTCCTAAAACACCGATTTCT-CATAATCAGGGATACTCCAACCCCGT
3296800 CGTTATCTCC
Statistics
Matches: 151, Mismatches: 21, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
185 42 0.28
186 100 0.66
187 9 0.06
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (186 bp):
GGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTCTCACAATCGGGGATACTCCAA
CCCCGTTAATCAGCGGGGATACTACAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGACTTT
ATTCCTAAAACACCGATTTCTCATAATCAGGGATACTCCAACCCCGTTATTTTCGA
Found at i:3296790 original size:107 final size:107
Alignment explanation
Indices: 3296594--3296799 Score: 256
Period size: 107 Copynumber: 1.9 Consensus size: 107
3296584 TTCTCATAAT
* * * *
3296594 CGGGAATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTCCTAAAATAT
1 CGGGAATACTACAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTCCTAAAACAC
*
3296659 TGATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTCG
66 CGATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTCG
* * * * *
3296701 CGGGGATACTACAACCTCGTTATTTTTGAGGGGATACTCCAACCCTGATTTTATTTCC-AGAACA
1 CGGGAATACTACAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTA-TTCCTAAAACA
* *
3296765 CCGATTT-TCCATAATCAGGGG-TACTCCAGCCCCGT
65 CCGATTTCT-CACAATC-GGGGATACTCCAACCCCGT
3296800 CGTTATCTCC
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
106 1 0.01
107 75 0.89
108 8 0.10
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (107 bp):
CGGGAATACTACAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTCCTAAAACAC
CGATTTCTCACAATCGGGGATACTCCAACCCCGTTATTTTCG
Found at i:3301281 original size:16 final size:16
Alignment explanation
Indices: 3301262--3301301 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
3301252 ATGAGAAAGT
3301262 AAAAAAAAACAAAAAC
1 AAAAAAAAACAAAAAC
* * *
3301278 AAAAAAAAATATACAC
1 AAAAAAAAACAAAAAC
3301294 AAAAAAAA
1 AAAAAAAA
3301302 GTGCAAAGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.85, C:0.10, G:0.00, T:0.05
Consensus pattern (16 bp):
AAAAAAAAACAAAAAC
Found at i:3302679 original size:62 final size:63
Alignment explanation
Indices: 3302557--3303032 Score: 414
Period size: 62 Copynumber: 7.6 Consensus size: 63
3302547 AATTCTTCAA
* *
3302557 ATCTCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTCAAG-G
1 ATCTCTTTTC-T--AAGTCCACGACTCAGTGGCATC-CTTTTCTTCAAAGTCCATGACTCAAGTG
3302621 GC
62 GC
* * * *
3302623 ATCTCTTTTCTAAGTCCATGACTTAGTGGCATCCTTTTCTTCCAAGTCCATTACTC-AGTGGC
1 ATCTCTTTTCTAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCATGACTCAAGTGGC
* *
3302685 ATCTCTTTCCAAAGTCCACGACTCAGTGGCAT-CTTTTCTTCAAAGTCCATGACTC-AGTGGC
1 ATCTCTTTTCTAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCATGACTCAAGTGGC
* * * * *
3302746 ATTTTTTTTCTTCAAAGTCCACGACTCAATGGCAT-CTCTTC-CCAAAGTCC--GACTC-AGTGG
1 ATCTCTTTTC-T--AAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCATGACTCAAGTGG
3302806 C
63 C
* * * *
3302807 ATCTTTTCTTCAAAGTCCACGACTCAGTGACATCTCTTTTC-T--AAGTCCACGACTC-AGTGGC
1 ATCTCTT-TTCTAAGTCCACGACTCAGTGGCATC-CTTTTCTTCAAAGTCCATGACTCAAGTGGC
* *
3302868 AT-TTTTTTCTTCAAAGTCCACGACTCAGTGGCAT-CTCTTTC--CAAAGTCCACGACTC-AGTG
1 ATCTCTTTTC-T--AAGTCCACGACTCAGTGGCATCCT-TTTCTTCAAAGTCCATGACTCAAGTG
3302928 GC
62 GC
* * * *
3302930 ATCTTTTCTTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGTCCATGACTC-AGTGGC
1 ATCTCTT-TTCTAAGTCCACGACTCAGTGGCATC-CTTTTCTTCAAAGTCCATGACTCAAGTGGC
* * * * * *
3302994 AATCTATTCTCAAAGTCCACAACTCTGTGGCACCCTTTT
1 -ATCTCTTTTCTAAGTCCACGACTCAGTGGCATCCTTTT
3303033 AAGTCCACAA
Statistics
Matches: 350, Mismatches: 38, Indels: 47
0.80 0.09 0.11
Matches are distributed among these distances:
59 28 0.08
60 6 0.02
61 95 0.27
62 98 0.28
63 37 0.11
64 69 0.20
65 7 0.02
66 10 0.03
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.34
Consensus pattern (63 bp):
ATCTCTTTTCTAAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCATGACTCAAGTGGC
Found at i:3302821 original size:123 final size:124
Alignment explanation
Indices: 3302560--3303025 Score: 573
Period size: 123 Copynumber: 3.8 Consensus size: 124
3302550 TCTTCAAATC
3302560 TCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTCAAG-GGCA
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCATC-TTTTTCTTCAAAGTCCACGACTC-AGTGGCA
* * * * * *
3302624 TCTCTTTTC-T--AAGTCCATGACTTAGTGGCATCCTTTTCTTCC-AAGTCCATTACTCAGTGGC
64 TTTTTTTTCTTCAAAGTCCACGACTCAGTGGCAT-CTCTTC--CCAAAGTCC--GACTCAGTGGC
3302685 A
124 A
*
3302686 TCTCTTTC--CAAAGTCCACGACTCAGTGGCATC-TTTTCTTCAAAGTCCATGACTCAGTGGCAT
1 TCT-TTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGCAT
*
3302748 TTTTTTTCTTCAAAGTCCACGACTCAATGGCATCTCTTCCCAAAGTCCGACTCAGTGGCA
65 TTTTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCCGACTCAGTGGCA
*
3302808 TCTTTTCTTCAAAGTCCACGACTCAGTGACATCTCTTTTC-T--AAGTCCACGACTCAGTGGCA-
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCATCT-TTTTCTTCAAAGTCCACGACTCAGTGGCAT
*
3302869 TTTTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGACTCAGTGGCA
65 TTTTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGT-C-CGACTCAGTGGCA
* *
3302931 TCTTTTCTTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGTCCATGACTCAGTGGCA-
1 TCTTTTCTTCAAAGTCCACGACTCAGTGGCATC-TTTTTCTTCAAAGTCCACGACTCAGTGGCAT
* * * * *
3302995 ATCTATTC-TCAAAGTCCACAACTCTGTGGCA
65 TTTTTTTCTTCAAAGTCCACGACTCAGTGGCA
3303026 CCCTTTTAAG
Statistics
Matches: 304, Mismatches: 20, Indels: 33
0.85 0.06 0.09
Matches are distributed among these distances:
121 48 0.16
122 36 0.12
123 106 0.35
124 10 0.03
125 55 0.18
126 45 0.15
127 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (124 bp):
TCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAGTGGCATT
TTTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTCCCAAAGTCCGACTCAGTGGCA
Found at i:3302970 original size:215 final size:217
Alignment explanation
Indices: 3302569--3303011 Score: 694
Period size: 215 Copynumber: 2.0 Consensus size: 217
3302559 CTCTTTTCTT
*
3302569 CAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTCAAGGGCATCTCTTTTCT
1 CAAAGT-C-CGACTCAGTGGCATC-TTTTTCTTCAAAGTCCACGACTCAAGGACATCTCTTTTCT
* * * **
3302634 AAGTCCATGACTTAGTGGCATCCTTTTCTTCCAAGTCCATTACTCAGTGGCATCTCTTTCCAAAG
63 AAGTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAG
* * *
3302699 TCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCATGACTCAGTGGCATTTTTTTTCTTCAAAGT
128 TCCACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGT
*
3302764 CCACGACTCAATGGC-ATCTCTTCC
193 CCACGACTCAATGGCAATCTATTCC
3302788 CAAAGTCCGACTCAGTGGCATC-TTTTCTTCAAAGTCCACGACTC-AGTGACATCTCTTTTCTAA
1 CAAAGTCCGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAAG-GACATCTCTTTTCTAA
**
3302851 GTCCACGACTCAGTGGCATTTTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTC
65 GTCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTC
3302916 CACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGTCC
130 CACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGTCC
* * *
3302981 ATGACTCAGTGGCAATCTATTCT
195 ACGACTCAATGGCAATCTATTCC
3303004 CAAAGTCC
1 CAAAGTCC
3303012 ACAACTCTGT
Statistics
Matches: 207, Mismatches: 15, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
214 2 0.01
215 168 0.81
216 15 0.07
217 15 0.07
218 1 0.00
219 6 0.03
ACGTcount: A:0.23, C:0.29, G:0.15, T:0.33
Consensus pattern (217 bp):
CAAAGTCCGACTCAGTGGCATCTTTTTCTTCAAAGTCCACGACTCAAGGACATCTCTTTTCTAAG
TCCACGACTCAGTGGCATCCTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCC
ACGACTCAGTGGCATCTTTTCTTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGTCCA
CGACTCAATGGCAATCTATTCC
Found at i:3303076 original size:34 final size:32
Alignment explanation
Indices: 3303027--3303598 Score: 428
Period size: 34 Copynumber: 18.0 Consensus size: 32
3303017 TCTGTGGCAC
*
3303027 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
* ** *
3303059 CCTTTTTAAAGCCCACAACTCTATGGCATTCTTTTT
1 CC-TTTT-AAGTCCACAACTCCGTGGCA--CCTTTT
* *
3303095 CCTTTTAAGTCCACGACTCTGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
*
3303122 CCTTTTAAGTCCACAACTCCATGGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
* *
3303154 CCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTT
1 CC-TTTT-AAGTCCACAACTCCGTGGCAC-C-TTTT
*
3303190 CCTTTTAAGTCCACAACTCTGTGGCA-----T
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
*
3303217 CCTTTTAAGTCCACAACTACGTGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTT-TT
* * * *
3303250 CTTTTTAAGTCCACAACTCTGCGG-ACATTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTTT
* * *
3303282 CTTTTTAAAGCCCACAACTCCATGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTCCGTGGCAC-C-TTTT
* * * *
3303317 TCTTTTAACTCCATAACTCTGTGGCA------
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
3303343 CCTTTTAAGTCCACAACTCCGTGGCACTCTTTCT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-CTTT-T
*
3303377 CCTTTTAAG-CCTACAACT-CGTGTCACTCTTTTT
1 CCTTTTAAGTCC-ACAACTCCGTGGCAC-C-TTTT
3303410 CCTTTTAAGTCCACAACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
* * ** *
3303437 ACTTTTAAGCCCACAACTCCACGACACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-C-TTTT
*
3303471 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-C-TTTT
*
3303505 CCTTTTAAGTCTACAACTCCGTGGCA-C----
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
*
3303532 CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCAC-C-TTTT
3303566 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-CCTTTT
3303599 AAGTCCATCA
Statistics
Matches: 436, Mismatches: 54, Indels: 99
0.74 0.09 0.17
Matches are distributed among these distances:
26 22 0.05
27 93 0.21
28 1 0.00
29 2 0.00
32 16 0.04
33 76 0.17
34 195 0.45
35 18 0.04
36 13 0.03
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (32 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTT
Found at i:3303086 original size:61 final size:61
Alignment explanation
Indices: 3303006--3303632 Score: 425
Period size: 61 Copynumber: 10.0 Consensus size: 61
3302996 TCTATTCTCA
*
3303006 AAGTCCACAACTCTGTGGCA-CCCTTTTAAGTCCACAACTCCATGGCAC-CTTTTCCTTTTT
1 AAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTCC-TTTT
* * * *
3303066 AAAGCCCACAACTCTATGGCATTCTTTTTCCTTTTAAGTCCACGACTCTGTGGCA--C----CCT
1 -AAGTCCACAACTCTGTGGCA-TC-----CCTTTTAAGTCCACAACTCCGTGGCACTCTTTTCCT
3303125 TTT
59 TTT
** * * *
3303128 AAGTCCACAACTCCATGGCACCTTTTCCTTTTTAAAGCCCACAACTCTGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCTGTGGCA-----TCCCTTTT-AAGTCCACAACTCCGTGGCACTC-TTTTCCT
3303193 TTT
59 TTT
* *
3303196 AAGTCCACAACTCTGTGGCAT-CCTTTTAAGTCCACAACTACGTGGCAC-CTTGTTCTTTTT
1 AAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACTCTT-TTCCTTTT
* * * * * *
3303256 AAGTCCACAACTCTGCGGACATTTTTCTTTTTAAAGCCCACAACTCCATGGCACTCTTTTTTCTT
1 AAGTCCACAACTCTGTGG-CA---TCCCTTTT-AAGTCCACAACTCCGTGGCACTC-TTTTCCTT
3303321 TT
60 TT
* *
3303323 AACTCCATAACTCTGTGGCA--CCTTTTAAGTCCACAACTCCGTGGCACTCTTTCTCCTTTT
1 AAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACTCTTT-TCCTTTT
* *
3303383 AAG-CCTACAACTC-GTGTCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACACTTTTAAG
1 AAGTCC-ACAACTCTGTGGCA-TC-----CCTTTTAAGTCCACAACTCCGTGGCACTCTTTT---
***
3303446 CC-CAC
56 CCTTTT
* * * *
3303451 AACTCCACGACACTCT-T---TTTCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGTCCAC-A-ACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACTC-TTTTCCTTTT
* * *
3303511 AAGTCTACAACTCCGTGGCA-CCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
1 AAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACTC-TTTTCCTTTT
* * * *
3303572 AAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCATC-ACTCTGTGACACCCTTTTCCCTTTT
1 AAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCA-CAACTCCGTGGCACTCTTTT-CCTTTT
3303633 CAAAAGCCCA
Statistics
Matches: 457, Mismatches: 56, Indels: 106
0.74 0.09 0.17
Matches are distributed among these distances:
58 4 0.01
59 16 0.04
60 75 0.16
61 195 0.43
62 14 0.03
63 5 0.01
64 1 0.00
65 8 0.02
66 22 0.05
67 54 0.12
68 53 0.12
69 5 0.01
70 5 0.01
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.35
Consensus pattern (61 bp):
AAGTCCACAACTCTGTGGCATCCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTCCTTTT
Found at i:3303092 original size:126 final size:125
Alignment explanation
Indices: 3302561--3303120 Score: 434
Period size: 123 Copynumber: 4.5 Consensus size: 125
3302551 CTTCAAATCT
* * * *
3302561 CTTTTCTTCAAAGTCCACGACTCAGTGGCATCTTTTTTCTTCAAAGTCCACGACTCAAG-GGC-A
1 CTTTTCTTCAAAGCCCACAACTCAATGGCATCTTTTTCCTTCAAAGTCCACGACTC-AGTGGCAA
* * ** * * * ** *
3302624 TCTCTT-TTCTAAGTCCATGACTTAGTGGCATCCTTTTCTTCCAAGTCCATTACTCAGTGGCAT
65 TCTATTCTTCAAAGTCCACAACTCAGTGGCATCC--CT-TTCAAAGTCCACAACTCAGTGGCAC
* * * *
3302687 CTCTTTC--CAAAGTCCACGACTCAGTGGCATC-TTTT-CTTCAAAGTCCATGACTCAGTGGCAT
1 CT-TTTCTTCAAAGCCCACAACTCAATGGCATCTTTTTCCTTCAAAGTCCACGACTCAGTGGCA-
* * * * * * * * *
3302748 TTTTTTTCTTCAAAGTCCACGACTCAATGGCATCTCTTCCCAAAGT-C-CGACTCAGTGGCAT
64 ATCTATTCTTCAAAGTCCACAACTCAGTGGCATCCCTT-TCAAAGTCCACAACTCAGTGGCAC
* * * * *
3302809 CTTTTCTTCAAAGTCCACGACTCAGTGACATCTCTTTT-C-T--AAGTCCACGACTCAGTGGCAT
1 CTTTTCTTCAAAGCCCACAACTCAATGGCATCT-TTTTCCTTCAAAGTCCACGACTCAGTGGCAA
* * * * * *
3302870 TTTTTTCTTCAAAGTCCACGACTCAGTGGCATCTCTTTCCAAAGTCCACGACTCAGTGGCAT
65 TCTATTCTTCAAAGTCCACAACTCAGTGGCATCCCTTT-CAAAGTCCACAACTCAGTGGCAC
* * * *
3302932 CTTTTCTTCAAAGTCCACGACTCAATGGCATCTTTTTTCTTCAAAGTCCATGACTCAGTGGCAAT
1 CTTTTCTTCAAAGCCCACAACTCAATGGCATCTTTTTCCTTCAAAGTCCACGACTCAGTGGCAAT
* *
3302997 CTATTC-TCAAAGTCCACAACTCTGTGGCA-CCCTTT-TAAGTCCACAACTCCA-TGGCAC
66 CTATTCTTCAAAGTCCACAACTCAGTGGCATCCCTTTCAAAGTCCACAACT-CAGTGGCAC
* * ** *
3303054 CTTTTCCTTTTTAAAGCCCACAACTCTATGGCATTCTTTTTCCTTTTAAGTCCACGACTCTGTGG
1 CTTTT-C--TTCAAAGCCCACAACTCAATGGCA-TCTTTTTCCTTCAAAGTCCACGACTCAGTGG
3303119 CA
62 CA
3303121 CCCTTTTAAG
Statistics
Matches: 373, Mismatches: 39, Indels: 44
0.82 0.09 0.10
Matches are distributed among these distances:
121 47 0.13
122 61 0.16
123 94 0.25
124 17 0.05
125 74 0.20
126 76 0.20
127 4 0.01
ACGTcount: A:0.23, C:0.29, G:0.14, T:0.34
Consensus pattern (125 bp):
CTTTTCTTCAAAGCCCACAACTCAATGGCATCTTTTTCCTTCAAAGTCCACGACTCAGTGGCAAT
CTATTCTTCAAAGTCCACAACTCAGTGGCATCCCTTTCAAAGTCCACAACTCAGTGGCAC
Found at i:3303105 original size:95 final size:94
Alignment explanation
Indices: 3303006--3303656 Score: 524
Period size: 95 Copynumber: 6.9 Consensus size: 94
3302996 TCTATTCTCA
* *
3303006 AAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTCCTTTTTAAAGC
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTT-AAGC
** *
3303071 CCACAACTCTATGGCATTCTTTTTCCTTTT
65 CCACAACTCCGTGGCACTCTTTTTCCTTTT
* * *
3303101 AAGTCCACGACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTTCCTTTTTAAAGC
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTT-AAGC
*
3303166 CCACAACTCTGTGGCACTCTTTTTCCTTTT
65 CCACAACTCCGTGGCACTCTTTTTCCTTTT
* * * *
3303196 AAGTCCACAACTCTGTGGCATCCTTTTAAGTCCACAACTACGTGGCACCTTGTT-CTTTTTAAGT
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTT-TTCCTTTTTAAGC
* * * *
3303260 CCACAACTCTGCGG-AC-ATTTTTCTTTTT
65 CCACAACTCCGTGGCACTCTTTTTCCTTTT
* * * * *
3303288 AAAGCCCACAACTCCATGGCACTCTTTTTTCTTTTAACTCCATAACTCTGTGGCA------CC-T
1 -AAGTCCACAACTCCGTGGCAC-C------CTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTT
* *
3303346 TTTAAGTCCACAACTCCGTGGCACTCTTTCTCCTTTT
58 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* *
3303383 AAG-CCTACAACT-CGTGTCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCA-C----AC-T
1 AAGTCC-ACAACTCCGTGGCA--C-----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTT
** *
3303440 TTTAAGCCCACAACTCCACGACACTCTTTTTCCTTTT
58 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* *
3303477 AAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCTACAACTCCGTGGCA-C----CC-TT
1 AAGTCCACAACTCCGTGGCA--C-----CCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTT
3303536 TTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
59 TTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTT
* * *
3303572 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATC-ACTCTGTGACACCCTTTTCCCTTTTCAA
1 AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA-CAACTCCGTGGCA-CCTTTT-CCTTTT--T
* *
3303636 AAGCCCACAAGTCGGTGGCAC
61 AAGCCCACAACTCCGTGGCAC
3303657 CCCTTTCAAA
Statistics
Matches: 475, Mismatches: 48, Indels: 63
0.81 0.08 0.11
Matches are distributed among these distances:
88 21 0.04
89 1 0.00
90 1 0.00
92 10 0.02
93 69 0.15
94 72 0.15
95 254 0.53
96 5 0.01
98 19 0.04
99 2 0.00
100 21 0.04
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.34
Consensus pattern (94 bp):
AAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTTTCCTTTTTAAGCC
CACAACTCCGTGGCACTCTTTTTCCTTTT
Found at i:3303347 original size:26 final size:27
Alignment explanation
Indices: 3303317--3303374 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 27
3303307 CACTCTTTTT
* *
3303317 TCTTTTAACTCCATAACTCTGTGGCAC
1 TCTTTTAACTCCACAACTCCGTGGCAC
*
3303344 -CTTTTAAGTCCACAACTCCGTGGCAC
1 TCTTTTAACTCCACAACTCCGTGGCAC
3303370 TCTTT
1 TCTTT
3303375 CTCCTTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 23 0.85
27 4 0.15
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (27 bp):
TCTTTTAACTCCACAACTCCGTGGCAC
Found at i:3303670 original size:29 final size:30
Alignment explanation
Indices: 3303630--3303786 Score: 177
Period size: 29 Copynumber: 5.5 Consensus size: 30
3303620 CCTTTTCCCT
*
3303630 TTTCAAAAGCCCACAAGTCGGTGGCACCCC
1 TTTCAAAAGCCCACAAGTCAGTGGCACCCC
* *
3303660 TTTC-AAAGCCCACAAGTTAGTGGCA-ACC
1 TTTCAAAAGCCCACAAGTCAGTGGCACCCC
* *
3303688 TTT--TAAG-CCACAAGTCAGTGGCACCCT
1 TTTCAAAAGCCCACAAGTCAGTGGCACCCC
* *
3303715 TTTCAAAAGCCCACAAGTCGGTGGCACCTC
1 TTTCAAAAGCCCACAAGTCAGTGGCACCCC
* *
3303745 TTTC-AAAGCCCACAAGTTAGTGGCA-ACC
1 TTTCAAAAGCCCACAAGTCAGTGGCACCCC
3303773 -TTCAAAAGCCCACA
1 TTTCAAAAGCCCACA
3303787 CAAGTTGGTG
Statistics
Matches: 107, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
26 15 0.14
27 10 0.09
28 16 0.15
29 41 0.38
30 25 0.23
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.20
Consensus pattern (30 bp):
TTTCAAAAGCCCACAAGTCAGTGGCACCCC
Found at i:3303719 original size:55 final size:57
Alignment explanation
Indices: 3303635--3303786 Score: 188
Period size: 56 Copynumber: 2.7 Consensus size: 57
3303625 TCCCTTTTCA
* *
3303635 AAAGCCCACAAGTCGGTGGCACCCCTTTC-AAAGCCCACAAGTTAGTGGCAACCT-TTT
1 AAAGCCCACAAGTCAGTGGCA-CCCTTTCAAAAGCCCACAAGTCAGTGGC-ACCTCTTT
*
3303692 -AAG-CCACAAGTCAGTGGCACCCTTTTCAAAAGCCCACAAGTCGGTGGCACCTCTTT
1 AAAGCCCACAAGTCAGTGGCACCC-TTTCAAAAGCCCACAAGTCAGTGGCACCTCTTT
* *
3303748 CAAAGCCCACAAGTTAGTGGCAACC-TTCAAAAGCCCACA
1 -AAAGCCCACAAGTCAGTGGCACCCTTTCAAAAGCCCACA
3303787 CAAGTTGGTG
Statistics
Matches: 84, Mismatches: 5, Indels: 12
0.83 0.05 0.12
Matches are distributed among these distances:
54 3 0.04
55 23 0.27
56 24 0.29
57 14 0.17
58 3 0.04
59 17 0.20
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.19
Consensus pattern (57 bp):
AAAGCCCACAAGTCAGTGGCACCCTTTCAAAAGCCCACAAGTCAGTGGCACCTCTTT
Found at i:3303872 original size:49 final size:47
Alignment explanation
Indices: 3303803--3304375 Score: 399
Period size: 49 Copynumber: 12.7 Consensus size: 47
3303793 GGTGGCATCT
*
3303803 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TCTT-TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-TTA
* *
3303853 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGG--C--A
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTA
* * *
3303896 ----TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTG
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTA
* * * * *
3303940 TCTCTAAGACCAATGTTGCTGGCCTTGAATTAGCACATTGG--C--A
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTA
* * *
3303983 ----TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTG
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTA
* * * *
3304027 TCTCTAAGACCAATGTCACTGGCCTTAAATCAGC--A----CA-TTA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTA
* * * * *
3304067 GC-ATAAGCCCAATATCGCTGGCCTTGAATGAGCATATTGGCACTTTG
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCAC-TTA
* * * *
3304114 TCTTTAAGACCAATGTCGCTGACCTTGAATCAGCACATTTG--C--A
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTA
*
3304157 ----TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAC---
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTA
* * * * *
3304197 -CTTTAAGACCAATGTCGCTGGCCTTGCATAAGCACATTGGCACCATCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-TTA
* *
3304245 TCTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-TTA
* * *
3304294 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAACACATTGGCACCTTTA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-TTA
* * * * *
3304343 TCTTTAAGTCCGATATCGTTAGCCTTGCATCAG
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAG
3304376 TGTATTGGTA
Statistics
Matches: 412, Mismatches: 73, Indels: 77
0.73 0.13 0.14
Matches are distributed among these distances:
39 121 0.29
40 3 0.01
41 2 0.00
42 4 0.01
43 35 0.08
44 1 0.00
45 3 0.01
46 3 0.01
47 3 0.01
48 89 0.22
49 144 0.35
50 4 0.01
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (47 bp):
TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACTTA
Found at i:3303916 original size:39 final size:40
Alignment explanation
Indices: 3303856--3304238 Score: 270
Period size: 39 Copynumber: 9.0 Consensus size: 40
3303846 ACCTTTATCT
*
3303856 TTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
3303896 -TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCA
1 TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
3303935 CCTTGTCTCTAAGACCAATGTTGCTGGCCTTGAATTAGCACATTGGCA
1 -------T-TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
3303983 -TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCA
1 TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * * *
3304022 CCTTGTCTCTAAGACCAATGTCACTGGCCTTAAATCAGCACATTAGCA
1 -------T-TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
3304070 -TAAGCCCAATATCGCTGGCCTTGAATGAGCATATTGGCA
1 TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
3304109 CTTTGTCTTTAAGACCAATGTCGCTGACCTTGAATCAGCACATTTGCA
1 --------TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* *
3304157 -TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
1 TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
* * *
3304196 CCTTTAAGACCAATGTCGCTGGCCTTGCATAAGCACATTGGCA
1 ---TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
3304239 CCATCATCTT
Statistics
Matches: 268, Mismatches: 44, Indels: 59
0.72 0.12 0.16
Matches are distributed among these distances:
39 134 0.50
43 34 0.13
48 100 0.37
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TTAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
Found at i:3303982 original size:87 final size:87
Alignment explanation
Indices: 3303808--3304336 Score: 726
Period size: 87 Copynumber: 6.0 Consensus size: 87
3303798 CATCTTCTTC
* *
3303808 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGTCGCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGTCGCT
3303873 GGCCTTGAATCAGCACATTGGCA
65 GGCCTTGAATCAGCACATTGGCA
* * *
3303896 TAAGCCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTTGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
*
3303961 GCCTTGAATTAGCACATTGGCA
66 GCCTTGAATCAGCACATTGGCA
* * *
3303983 TAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCACTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
* *
3304048 GCCTTAAATCAGCACATTAGCA
66 GCCTTGAATCAGCACATTGGCA
* *
3304070 TAAGCCCAATATCGCTGGCCTTGAATGAGCATATTGGCACTTTGTCTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
* *
3304135 ACCTTGAATCAGCACATTTGCA
66 GCCTTGAATCAGCACATTGGCA
3304157 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C----CTTTAAGACCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
* *
3304217 GCCTTGCATAAGCACATTGGCACCATCA
66 GCCTTGAATCAGCACATTGG------CA
* * *
3304245 TCTTTAAGTCCGATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGACCAATGT
1 ----TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTGTCTTTAAGACCAATGT
*
3304310 CGCTGGCCTTGAATCAACACATTGGCA
61 CGCTGGCCTTGAATCAGCACATTGGCA
3304337 CCTTTATCTT
Statistics
Matches: 393, Mismatches: 32, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
82 36 0.09
87 239 0.61
88 41 0.10
92 39 0.10
93 1 0.00
98 37 0.09
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.29
Consensus pattern (87 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCA
Found at i:3305678 original size:13 final size:13
Alignment explanation
Indices: 3305660--3305685 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3305650 TACACCAAGT
3305660 ATGTATCGATACA
1 ATGTATCGATACA
3305673 ATGTATCGATACA
1 ATGTATCGATACA
3305686 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3305683 original size:32 final size:33
Alignment explanation
Indices: 3305642--3305705 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
3305632 TAGCCAAACT
* **
3305642 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
3305674 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
3305706 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:3309197 original size:13 final size:13
Alignment explanation
Indices: 3309179--3309203 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3309169 TTTTCCAGAT
3309179 TGTATCGATACAA
1 TGTATCGATACAA
3309192 TGTATCGATACA
1 TGTATCGATACA
3309204 TTACTTCAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3310603 original size:38 final size:40
Alignment explanation
Indices: 3310556--3310671 Score: 114
Period size: 38 Copynumber: 3.0 Consensus size: 40
3310546 GTACGAACTT
3310556 GTTAAAATTACTTTAATTAAGGGAGAAATAAAAGAAAAAC
1 GTTAAAATTACTTTAATTAAGGGAGAAATAAAAGAAAAAC
* * * ** * ***
3310596 G-T-GAATTACTTT-GTTAAGGGGGAGAATGTACG-AACTT
1 GTTAAAATTACTTTAATTAAGGGAGA-AATAAAAGAAAAAC
3310633 GTTAAAATTACTTTAATTAAGGGAGAAATAAAAGAAAAA
1 GTTAAAATTACTTTAATTAAGGGAGAAATAAAAGAAAAA
3310672 ATGTAAAATT
Statistics
Matches: 54, Mismatches: 17, Indels: 10
0.67 0.21 0.12
Matches are distributed among these distances:
37 12 0.22
38 15 0.28
39 15 0.28
40 12 0.22
ACGTcount: A:0.47, C:0.05, G:0.20, T:0.28
Consensus pattern (40 bp):
GTTAAAATTACTTTAATTAAGGGAGAAATAAAAGAAAAAC
Found at i:3310605 original size:77 final size:77
Alignment explanation
Indices: 3310518--3310671 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
3310508 GGGGAGAATG
3310518 CGTGAATTACTTTGTTAAGGGGGAGAATGTACGAACTTGTTAAAATTACTTTAATTAAGGGAGAA
1 CGTGAATTACTTTGTTAAGGGGGAGAATGTACGAACTTGTTAAAATTACTTTAATTAAGGGAGAA
3310583 ATAAAAGAAAAA
66 ATAAAAGAAAAA
3310595 CGTGAATTACTTTGTTAAGGGGGAGAATGTACGAACTTGTTAAAATTACTTTAATTAAGGGAGAA
1 CGTGAATTACTTTGTTAAGGGGGAGAATGTACGAACTTGTTAAAATTACTTTAATTAAGGGAGAA
3310660 ATAAAAGAAAAA
66 ATAAAAGAAAAA
3310672 ATGTAAAATT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.43, C:0.06, G:0.22, T:0.29
Consensus pattern (77 bp):
CGTGAATTACTTTGTTAAGGGGGAGAATGTACGAACTTGTTAAAATTACTTTAATTAAGGGAGAA
ATAAAAGAAAAA
Found at i:3310642 original size:39 final size:40
Alignment explanation
Indices: 3310522--3310655 Score: 134
Period size: 39 Copynumber: 3.5 Consensus size: 40
3310512 AGAATGCGTG
*
3310522 AATTACTTT-GTTAAGGGGGAGAATGTACGAACTTGTTAA
1 AATTACTTTAATTAAGGGGGAGAATGTACGAACTTGTTAA
* ** * *** *
3310561 AATTACTTTAATTAAGGGAGA-AATAAAAGAAAAACG-T-G
1 AATTACTTTAATTAAGGGGGAGAATGTACG-AACTTGTTAA
*
3310599 AATTACTTT-GTTAAGGGGGAGAATGTACGAACTTGTTAA
1 AATTACTTTAATTAAGGGGGAGAATGTACGAACTTGTTAA
3310638 AATTACTTTAATTAAGGG
1 AATTACTTTAATTAAGGG
3310656 AGAAATAAAA
Statistics
Matches: 70, Mismatches: 19, Indels: 11
0.70 0.19 0.11
Matches are distributed among these distances:
37 12 0.17
38 15 0.21
39 24 0.34
40 19 0.27
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (40 bp):
AATTACTTTAATTAAGGGGGAGAATGTACGAACTTGTTAA
Found at i:3311295 original size:13 final size:13
Alignment explanation
Indices: 3311277--3311302 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3311267 TACACCAAGT
3311277 ATGTATCGATACA
1 ATGTATCGATACA
3311290 ATGTATCGATACA
1 ATGTATCGATACA
3311303 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3312165 original size:13 final size:13
Alignment explanation
Indices: 3312147--3312171 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3312137 TATTCAATGG
3312147 ATCGATACATTGT
1 ATCGATACATTGT
3312160 ATCGATACATTG
1 ATCGATACATTG
3312172 ATCTTTGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
ATCGATACATTGT
Found at i:3315677 original size:20 final size:20
Alignment explanation
Indices: 3315652--3315867 Score: 117
Period size: 20 Copynumber: 9.8 Consensus size: 20
3315642 TTTTACCTAG
3315652 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTTTTA
* * * *
3315672 ATGTATCAATACATGTATGA
1 ATGTATCGATACATTTTTTA
3315692 ATGTATCGATACATTGTCTTTTTTACCCA
1 ATGTATCGATACA-----TTTTTT----A
*
3315721 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTTTTTA
*
3315742 ATGTATCGATACATTCTTTA
1 ATGTATCGATACATTTTTTA
3315762 ATGTATCGATACATTCTGTCTTTTTACCTA
1 ATGTATCGATACA-------TTTTT---TA
* * *
3315792 GATATATCGATATATTTTTCA
1 -ATGTATCGATACATTTTTTA
* * *
3315813 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTTA
* *
3315833 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTTTTTA
3315853 ATGTATCGATACATT
1 ATGTATCGATACATT
3315868 CTATCTTTTT
Statistics
Matches: 151, Mismatches: 24, Indels: 42
0.70 0.11 0.19
Matches are distributed among these distances:
20 105 0.70
21 2 0.01
24 5 0.03
25 8 0.05
27 4 0.03
29 1 0.01
30 15 0.10
31 11 0.07
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTA
Found at i:3315818 original size:71 final size:72
Alignment explanation
Indices: 3315641--3315849 Score: 318
Period size: 71 Copynumber: 2.9 Consensus size: 72
3315631 AAAAGTCATA
* *
3315641 TTTTTACCTAGATGTATCGATACATTTTTTAATGTATCAATACATGTATGAATGTATCGATACA-
1 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
3315705 T-TGTCT
66 TCTGTCT
* * *
3315711 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACAT-TCTTTAATGTATCGATACA
1 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATGT-ATGAATGTATCGATACA
3315775 TTCTGTC-
65 TTCTGTCT
* *
3315782 TTTTTACCTAGATATATCGATATATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
3315847 TCT
66 TCT
3315850 TCAATGTATC
Statistics
Matches: 125, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
69 1 0.01
70 57 0.46
71 62 0.50
72 5 0.04
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (72 bp):
TTTTTACCTAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TCTGTCT
Found at i:3315846 original size:91 final size:91
Alignment explanation
Indices: 3315722--3315917 Score: 295
Period size: 91 Copynumber: 2.2 Consensus size: 91
3315712 TTTTACCCAG
* * * *
3315722 ATGTATCGATACATTTTTCAATGTATCGATACATTCTTTAATGTATCGATACATTCTGTCTTTTT
1 ATGTATCGATACATGTATCAATGTATCGATACATTCTTCAATGTATCGATACATTCTATCTTTTT
* * **
3315787 ACCTAGATATATCGATATATT-TTTCA
66 ACCCAGATATATCGATACATTGAAT-A
*
3315813 ATGTATCGATACATGTATGAATGTATCGATACATTCTTCAATGTATCGATACATTCTATCTTTTT
1 ATGTATCGATACATGTATCAATGTATCGATACATTCTTCAATGTATCGATACATTCTATCTTTTT
3315878 ACCCAGATATATCGATACATTGAATA
66 ACCCAGATATATCGATACATTGAATA
3315904 ATGTATCGATACAT
1 ATGTATCGATACAT
3315918 CTAGTTAAAA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
91 94 0.99
92 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (91 bp):
ATGTATCGATACATGTATCAATGTATCGATACATTCTTCAATGTATCGATACATTCTATCTTTTT
ACCCAGATATATCGATACATTGAATA
Found at i:3315868 original size:20 final size:20
Alignment explanation
Indices: 3315722--3315869 Score: 118
Period size: 20 Copynumber: 6.8 Consensus size: 20
3315712 TTTTACCCAG
*
3315722 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTCTTCA
*
3315742 ATGTATCGATACATTCTTTA
1 ATGTATCGATACATTCTTCA
3315762 ATGTATCGATACATTCTGTCTTTTTACCTA
1 ATGTATCGATACA---T-TC---TT--C-A
* * *
3315792 GATATATCGATATATTTTTCA
1 -ATGTATCGATACATTCTTCA
* *
3315813 ATGTATCGATACATGT-ATGA
1 ATGTATCGATACAT-TCTTCA
3315833 ATGTATCGATACATTCTTCA
1 ATGTATCGATACATTCTTCA
3315853 ATGTATCGATACATTCT
1 ATGTATCGATACATTCT
3315870 ATCTTTTTAC
Statistics
Matches: 103, Mismatches: 12, Indels: 26
0.73 0.09 0.18
Matches are distributed among these distances:
19 1 0.01
20 78 0.76
21 2 0.02
22 1 0.01
23 1 0.01
24 4 0.04
27 3 0.03
28 1 0.01
30 1 0.01
31 11 0.11
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.43
Consensus pattern (20 bp):
ATGTATCGATACATTCTTCA
Found at i:3319468 original size:34 final size:34
Alignment explanation
Indices: 3319430--3319513 Score: 168
Period size: 34 Copynumber: 2.5 Consensus size: 34
3319420 TAGGGTAGTT
3319430 TTGTATCGATACATTTTAGACATGTATCGATACA
1 TTGTATCGATACATTTTAGACATGTATCGATACA
3319464 TTGTATCGATACATTTTAGACATGTATCGATACA
1 TTGTATCGATACATTTTAGACATGTATCGATACA
3319498 TTGTATCGATACATTT
1 TTGTATCGATACATTT
3319514 ACAGTTTTTA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.40
Consensus pattern (34 bp):
TTGTATCGATACATTTTAGACATGTATCGATACA
Found at i:3319470 original size:13 final size:13
Alignment explanation
Indices: 3319452--3319512 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
3319442 ATTTTAGACA
3319452 TGTATCGATACAT
1 TGTATCGATACAT
3319465 TGTATCGATACAT
1 TGTATCGATACAT
*
3319478 T-T-T--AGACA-
1 TGTATCGATACAT
3319486 TGTATCGATACAT
1 TGTATCGATACAT
3319499 TGTATCGATACAT
1 TGTATCGATACAT
3319512 T
1 T
3319513 TACAGTTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 1 0.02
9 5 0.12
10 1 0.02
11 1 0.02
12 5 0.12
13 28 0.68
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3323055 original size:375 final size:375
Alignment explanation
Indices: 3322365--3323080 Score: 1396
Period size: 375 Copynumber: 1.9 Consensus size: 375
3322355 ATCATTTTCC
3322365 TTATGCCATATCACTACATTAGTCGCATATCTCTTGTTATAATAATTGTTATGCATTCATGTTTT
1 TTATGCCATATCACTACATTAGTCGCATATCTCTTGTTATAATAATTGTTATGCATTCATGTTTT
3322430 ATTAGTTGTTTTCTTAAAAAATCATTAAAGCAATGTTCCATATCAATATCCCTCCAGTGCTCGAC
66 ATTAGTTGTTTTCTTAAAAAATCATTAAAGCAATGTTCCATATCAATATCCCTCCAGTGCTCGAC
3322495 GTGGAATATCCTTTTTAAATTCAAACCCGAACATTTTATCCTTACCTTTCACCATCTCCATGGGA
131 GTGGAATATCCTTTTTAAATTCAAACCCGAACATTTTATCCTTACCTTTCACCATCTCCATGGGA
*
3322560 TATGTAATGGTGCCAAATTATTTTCATAAAAATCAGGTTATGTTTTTTTACAAAAAATCATGCAT
196 TATGTAATGGTGCCAAATTATTTTCATAAAAATCAGGTTATGATTTTTTACAAAAAATCATGCAT
3322625 CAATAAAAAGGGATTATATTCAATTACTAACATTGGAAGCTGAGAAAATCGAAATCGGGATAGTA
261 CAATAAAAAGGGATTATATTCAATTACTAACATTGGAAGCTGAGAAAATCGAAATCGGGATAGTA
3322690 TATAGATAAAAAGTACATTAGTCGCATATCTCTTGTTATAATAATTGTTA
326 TATAGATAAAAAGTACATTAGTCGCATATCTCTTGTTATAATAATTGTTA
3322740 TTATGCCATATCACTACATTAGTCGCATATCTCTTGTTATAATAATTGTTATGCATTCATGTTTT
1 TTATGCCATATCACTACATTAGTCGCATATCTCTTGTTATAATAATTGTTATGCATTCATGTTTT
*
3322805 ATTAGTTGTTTTCTTAAAAAATCATTAAAGCAATGTTCCATATCAATATCCCTCTAGTGCTCGAC
66 ATTAGTTGTTTTCTTAAAAAATCATTAAAGCAATGTTCCATATCAATATCCCTCCAGTGCTCGAC
* *
3322870 GTGGAATATCCTTTTTAAATTCAAACCCGAACATTTTATCTTTACCTTTCACTATCTCCATGGGA
131 GTGGAATATCCTTTTTAAATTCAAACCCGAACATTTTATCCTTACCTTTCACCATCTCCATGGGA
3322935 TATGTAATGGTGCCAAATTATTTTCATAAAAATCAGGTTATGATTTTTTACAAAAAATCATGCAT
196 TATGTAATGGTGCCAAATTATTTTCATAAAAATCAGGTTATGATTTTTTACAAAAAATCATGCAT
3323000 CAATAAAAAGGGATTATATTCAATTACTAACATTGGAAGCTGAGAAAATCGAAATCGGGATAGTA
261 CAATAAAAAGGGATTATATTCAATTACTAACATTGGAAGCTGAGAAAATCGAAATCGGGATAGTA
3323065 TATAGATAAAAAGTAC
326 TATAGATAAAAAGTAC
3323081 CAATTTTGGG
Statistics
Matches: 337, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
375 337 1.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (375 bp):
TTATGCCATATCACTACATTAGTCGCATATCTCTTGTTATAATAATTGTTATGCATTCATGTTTT
ATTAGTTGTTTTCTTAAAAAATCATTAAAGCAATGTTCCATATCAATATCCCTCCAGTGCTCGAC
GTGGAATATCCTTTTTAAATTCAAACCCGAACATTTTATCCTTACCTTTCACCATCTCCATGGGA
TATGTAATGGTGCCAAATTATTTTCATAAAAATCAGGTTATGATTTTTTACAAAAAATCATGCAT
CAATAAAAAGGGATTATATTCAATTACTAACATTGGAAGCTGAGAAAATCGAAATCGGGATAGTA
TATAGATAAAAAGTACATTAGTCGCATATCTCTTGTTATAATAATTGTTA
Found at i:3325498 original size:28 final size:27
Alignment explanation
Indices: 3325442--3325513 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
3325432 GGAATAAAGC
* *
3325442 CGGGGTTGGAGTACCCCCTCGGAAGTAA
1 CGGGGTTGGAGTA-TCCCTCGGAAATAA
3325470 CGGGGTTGGAGTATCCCT-GATGAAATAA
1 CGGGGTTGGAGTATCCCTCG--GAAATAA
*
3325498 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
3325514 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 4 0.10
28 34 0.87
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCTCGGAAATAA
Found at i:3325609 original size:53 final size:52
Alignment explanation
Indices: 3325502--3325627 Score: 157
Period size: 53 Copynumber: 2.4 Consensus size: 52
3325492 AAATAACGAG
* * * *
3325502 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCACGATTGTGAAAAATTGGTAGTTTTGAAAATAAAATCAGA
3325554 GTTGGAGTATCCACGATTAAAG-GAAAAATTGGT-GTTTTGAAAATAAAATCAGA
1 GTTGGAGTATCCACGATT---GTGAAAAATTGGTAGTTTTGAAAATAAAATCAGA
* *
3325607 GTTGGAATATCCCCGATTGTG
1 GTTGGAGTATCCACGATTGTG
3325628 GAGAATTGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
50 1 0.02
51 1 0.02
52 17 0.27
53 33 0.52
54 11 0.17
55 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.32
Consensus pattern (52 bp):
GTTGGAGTATCCACGATTGTGAAAAATTGGTAGTTTTGAAAATAAAATCAGA
Found at i:3327939 original size:20 final size:20
Alignment explanation
Indices: 3327914--3327968 Score: 110
Period size: 20 Copynumber: 2.8 Consensus size: 20
3327904 AAAATGCCTG
3327914 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
3327934 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGTAA
3327954 AATGTATCGATACAT
1 AATGTATCGATACAT
3327969 CTGGGTAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTGTAA
Found at i:3328024 original size:13 final size:13
Alignment explanation
Indices: 3328006--3328031 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3327996 ACAAAGATCC
3328006 ATGTATCGATACA
1 ATGTATCGATACA
3328019 ATGTATCGATACA
1 ATGTATCGATACA
3328032 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3328027 original size:33 final size:33
Alignment explanation
Indices: 3327985--3328051 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3327975 AAAATTTCCA
***
3327985 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
3328018 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3328051 A
1 A
3328052 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3329234 original size:22 final size:21
Alignment explanation
Indices: 3329208--3329269 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 21
3329198 ACTATCTACA
*
3329208 CTTTTCTTTTCTTTTCATGTTT
1 CTTTTTTTTTCTTTTCAT-TTT
*
3329230 -TTTTTTTCTTTTTTTCATTTT
1 CTTTTTTT-TTCTTTTCATTTT
3329251 CTTTTTTTGTTTCTTTTCA
1 C-TTTTTT-TTTCTTTTCA
3329270 CGCCTTTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 9 0.27
22 9 0.27
23 14 0.42
24 1 0.03
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (21 bp):
CTTTTTTTTTCTTTTCATTTT
Found at i:3329242 original size:12 final size:12
Alignment explanation
Indices: 3329227--3329267 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
3329217 TCTTTTCATG
3329227 TTTTTTTTTTCT
1 TTTTTTTTTTCT
3329239 TTTTTTCATTTTCT
1 TTTTTT--TTTTCT
*
3329253 TTTTTTGTTTCT
1 TTTTTTTTTTCT
3329265 TTT
1 TTT
3329268 CACGCCTTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
12 14 0.54
14 12 0.46
ACGTcount: A:0.02, C:0.10, G:0.02, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTCT
Found at i:3329244 original size:14 final size:14
Alignment explanation
Indices: 3329208--3329258 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
3329198 ACTATCTACA
*
3329208 CTTTTCTTTTCTTTT
1 CTTTT-TTTTATTTT
*
3329223 CATGTTTTTT-TTTT
1 C-TTTTTTTTATTTT
*
3329237 CTTTTTTTCATTTT
1 CTTTTTTTTATTTT
3329251 CTTTTTTT
1 CTTTTTTT
3329259 GTTTCTTTTC
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 6 0.19
14 17 0.55
15 5 0.16
16 3 0.10
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.80
Consensus pattern (14 bp):
CTTTTTTTTATTTT
Found at i:3329806 original size:42 final size:42
Alignment explanation
Indices: 3329694--3337117 Score: 794
Period size: 42 Copynumber: 178.6 Consensus size: 42
3329684 GGGCAGATAA
* * * *
3329694 AAGGTG-GAAAAGTCTCCAGGGTCAAAGCCGACAGGCAAACTT
1 AAGGTGAG-AAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3329736 GAGGGTAAGAAAGTCTCCATGGTCAAAGCCGACAGGTAGACTT
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * *
3329779 AAGATGAGGTAGTCTCCAAAGTCAAAGCCGATAGGTAGACTA
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * *
3329821 AAGGTAAGAAAGTCT-CTAGAGTCAAAACCGACAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAG-GTCAAAGCTGATAGGCAGACTT
* ** * * *
3329863 GAGGTGAGGTAGTCTCTAAAGTCAAAGTTGATAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * **
3329904 AAGGGTAAGAAAGTCTCCAGGGTCAAAGCTGATAGAAAGACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
** *
3329947 AAGGTGAGGTAGTCTCCAAGGTCAAAGCTGATAGGCAGAGTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3329989 AAGGTAAGAAAGTCTCCAAGGTCAGAGCTGACAAGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * *
3330031 AAGAT--G--AG---CCAAGGTCAAAACCGATAAGCAAACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * * * * *
3330066 GAGATTTGAAAGTTTCTAGGGTCAAAGCCGACAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * *
3330108 GAGGTGAGGTAGCCTTCAAGGTCAAAG-TCGATAGGCAAAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * *
3330149 AAGGGTAAGAAAGTCTCTAAGGTCAAATCCGATAGGTAGACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * * *
3330192 GAA-ATTTGAAAG-CTTCTAGGGTCAAAGCCGACAGGCAAACTT
1 -AAGGTGAGAAAGTC-TCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * ** *
3330234 GAGGTGAGGTAGTCTCTAAGGTCAAAGCCAACAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * *
3330275 AAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGATAGGCAGACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
** ** * * *
3330318 AAGGTGAGGCAGTCTTGAAGGTCAAAGCCG-TCAAGAAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGAT-AGGCAGACTT
* * * * **
3330359 AATGGTAAAAAAATCTCCAGGGTCAAAGCCAATTAGTG--GACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGA-TAG-GCAGACTT
* * ** * * * * * **
3330402 GAGATGAGGTAGTCTCTAGGGTCAAAGATGACAAGCAGACCG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3330444 AGGGTAAGAAAGTTTCCAAGGTCAAAGCCGACAAGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * ** * * * * *
3330486 GAGGTAAGGCAA-TTTCTAGGGTCAAAGCCAACAAGTAAACTG
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3330528 AAGGTAAGAAGGTATCTAAGGTCAAAGCCGACAGGCAGACCT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * *
3330570 GAGGTGAGGCAGTCTCCAAGGTCAAAG-TCAATAGGCAAACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * *
3330612 AAGGT-AGAAAAGTCTCGAGGGTCAAAGCCGACAAGCAGACTT
1 AAGGTGAG-AAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3330654 GAGGTGAG---G--T--AGGGTCAAAGCTGACAGGTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3330689 GAGGGTAAGAATGCCTCCAAGGTCAAAGCCGATAGG-TGCACTG
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAG-ACTT
* * * * *
3330732 AGGGTAAGAAAGTCTCCAAGGTCAAAGCCGATAGGAAAACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
** * * *
3330774 AAGGTGAGGCAGGCTCCAAGGTCAAAGCCGATAGGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * ** *
3330816 AAGGTAATAATGTCTCCAGGGTCAAAGCCAATAGGCAAACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * * * * *
3330858 GAGATGAGGTAGTCTCTAGGGTCAAAACT--TGCGTGTAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGAT-AG-GCAGACTT
* * * ** *
3330899 AAGGGTAAGAAAGTCTACAGGGTCAAAGCCAATAGGCAAACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * *
3330942 AAGGTAAGGCAGCCTCCAAGGTCAAAGCCGACAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * *
3330983 GAGGCCAAGAAAGTCTACAGGGTCAAAGCCGACAGGCAGACTT
1 AAGG-TGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * ** ** *
3331026 GAGATGAGGCAA-TCTCTAGGGTCAAAACCGACCGATAGACTA
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** ** * * * * *
3331068 AAGATGTGGTAGTCTTTAGGGTCAAAGCTAACAGGCAAACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * *
3331110 AGGGTAAGAAAGTCGCCAAGGTCAAAGCCGATA-ACAAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGC-AGACTT
* ** *** * * * *
3331152 GAGGTGAGGTAGTCTCTGGGGTCAAAG-TCAATAAGTAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3331194 AAGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
*
3331236 AAGGTGAG---G----CAAGGTCAAAG-TCGACAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3331271 AAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGA-CGGTAGACTT
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * ** *
3331313 GAA-GTGA-AGCAGTCTCTAGGGTCAAAGCCGATAGGTTGACTG
1 -AAGGTGAGA-AAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3331355 AGGGTAAGAAAGTCTCTAGGGTCAAAG-TCGAGAAGTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * ** * * *
3331397 GAGATGAGGTAGTCTCCAAGGTCAAAGCTGATAAGTAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3331439 AGGGTAAGGAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* **
3331481 AAGGTAAGAAAGTCTCCAAGGTCAAAG-TCGATAGAAAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* ** * * * * ** * *
3331523 AAGATGAGGCAGTTTTCATGGTAAAAAATGACAGACAGA-TT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * *
3331564 GAGGGTAAGAAAGTCTTCAAGTTCAAAGCCGCTAGGCAAACTC
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3331607 AGGGTAAGAAAGTCTCCAAGGACAAAGCTGACAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * *
3331649 GAGGTGAGGTAGTCTCTAGGGTCAAAGCCGACAGGCAGA-TT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * *
3331690 GAGG-GAAGAAAGTCTCTAAAGTCAAAGC-CAGTAGGCAAACTT
1 AAGGTG-AGAAAGTCTCCAAGGTCAAAGCTGA-TAGGCAGACTT
* * * ** ** * *
3331732 GAGATAAGGCAGTCTCCAAGGTCAAAGCCAACAGGCA-AATT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3331773 GAGGGTAAGAAAGTCTCCAAGCTTAAAGCCGACAGGCAGACAT
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** ** * * * * *
3331816 GAGGTGAGGCAGTCTTGAAGGTTAAAG-TCGACAAGTAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3331858 ATGGTAAAAAAATCTCCACA-GTCAAAGCTAATAGGCAGGCTT
1 AAGGTGAGAAAGTCTCCA-AGGTCAAAGCTGATAGGCAGACTT
* * ** * *
3331900 GAGATGAGGCAGTCTCTAGGGTCAAAGCTGATAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3331941 GAGGTTAAGAAAGTTTCCAAGGTCAAAGCTGACAGGCAGACTT
1 AAGG-TGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * * * * * * *
3331984 GAGGTGAGGTAGTTTCTAGGGTCAAAGCCGACAAGTAAACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * * *
3332026 AGGGTAAGAAAGTATCTAGGGTCAAAGCTGATAGGTAAAATG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * **
3332068 AAGGT-AGGAAAGTCTCTAGGGTCAAAG-TCAACAAACAGACTT
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * *
3332110 AAGGTGAG--A---T--AGGGTCAAAGCTGACAGGTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3332145 GAGGGTAAGAATGTCTCTAGGGTCAAAGCCGATAGGTAGAC-T
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * ** *
3332187 AAGGGTAAGAAAGT-TTCTAGGATTAAAGCCAACAGGCAGACTT
1 AA-GGTGAGAAAGTCTCCAAGG-TCAAAGCTGATAGGCAGACTT
* ** * * ** * *
3332230 GAA-ATGAGGTAGTGT-CAAGGGTTAAAGCCAACT-GGGAGACTG
1 -AAGGTGAGAAAGTCTCCAA-GGTCAAAGCTGA-TAGGCAGACTT
** * * * * *
3332272 GGGGT-AGGAAAATCTCCAAAGTCAAAG-TCGACAGGGAAACTT
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * ** * * * *
3332314 GAGATGAGGCAGTCTCAAAGGTCAAAGCTGACAGGTAG-TTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * *
3332355 GAGGGTAAAAAAGTCTCCATGGACAAAGCCGATGGGCAAACTT
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * *
3332398 GAGGTTAGACAGTCTCCAAGGTCAAAGC-CATCAGGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGAT-AGGCAGACTT
* * * * *
3332440 AAGGTAAGAAAGTCTCTAGGGTCAAAG-TCGATCGGTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * ** ** * * * *
3332482 GAGGTTAGGTAGTCTTTAGGGTCAAAGCCGACAAGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * * * *
3332524 GAGATGAGGTAGTCTTCAAGATCAAAGGC-GACAGGTA-A---
1 AAGGTGAGAAAGTCTCCAAGGTCAAA-GCTGATAGGCAGACTT
* * * * ** * *
3332562 AGGGT-AGGAAAATCTCTAGGGTCAAAGCCAACAAGCAGACTT
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * ** *
3332604 GAGATGAGGCAA-TCTCGATGGTCAAGGCCAACAGGCA-AGC-T
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGA-CTT
** * *
3332645 AAGAGTGAGAAAGTCTCCAAGGTCAAAAAATCAATAGGTAGACTT
1 AAG-GTGAGAAAGTCTCCAAGGTC-AAAGCT-GATAGGCAGACTT
* * ** * *
3332690 GAGGTAAGGTAGTATCCAAGGTCAAAG-TCGATAGGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3332732 AAGGTAAGAATGTCTCTAAGGTCAATGCCGATAGGCAGGCTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
** * * *
3332774 -AGGATGAGGTAGTCTCCTAGGTCAAAG-TCGACAGGCAGACTG
1 AAGG-TGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3332816 AGGGTAAGAAAGTCTCCGAGGTCAAAGTTGACAAGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * *
3332858 GAGGTGAGGTAGTCTCTAAGGTCAAAGTTGATGGGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3332900 AGGGT-AGGAAAGTC-CCTTAGGTCAATGTTGATAGGCACACGT
1 AAGGTGA-GAAAGTCTCC-AAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3332942 GAGAT-A-AAGTAGTCTCTAGGGTCAAAGCTGACAAGCAAAC-T
1 AAGGTGAGAA--AGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3332983 AGAGATAAGACAA-TCTCTAGGGTCTAAGCTGATAGGCA-AATT
1 A-AGGTGAGA-AAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3333025 GAGG-GTACAAAAGTCGCCAAGGTCAAAGCCGACAGCCAGACTT
1 AAGGTG-A-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * * * *
3333068 GAGGTGA-AGCAGTCTTTAGGGTCAAAGTTGATAGGTA-AATT
1 AAGGTGAGA-AAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * *
3333109 GAGG-GAAGAAAGTTTCTAAAGTCAAAG-TCGATAGGCAAACTT
1 AAGGTG-AGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * ** * * * * **
3333151 GAGATAAGGCAGTCTTCC-GGGTCAAAACAGACAGGCAGACCG
1 AAGGTGAGAAAGTC-TCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3333193 AGGGTAAGAAATTCTCTAAGGTCAAAG-TCGACAGGCAAACAT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* ** ** * * * * * *
3333235 GAGGTGAGGCAGTCTTGAGGGTCAAAGCCGACAAGCACACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3333277 ACGGTAAAAAAATCTCCAGGGTCAAAGCTAATAGGCAGAATT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * ** * * ** * * *
3333319 GAGATGCGTTAGTCTCTAGGGTCAAAGCCAACAAGCAAAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3333360 ATAGGTAAGAAAGTTTCCAAAGTCAAAG-TCGAGGTGAGGCAGCCTCT
1 A-AGGTGAGAAAGTCTCCAAGGTCAAAGCT-GA--T-AGGCAGACT-T
** * **
3333407 -AGG-GTCAAAGCCGACAA-GT-AAA-CTG--AGG--G---T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * *
3333437 -A----AGAAAGTATCTAGGGTCAAAGCCGACAAGTAGACTA
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* *
3333474 AAGGT-AGGAAAGTCT-CAAGGGTCAAAG-TCGACAGACAGACTT
1 AAGGTGA-GAAAGTCTCCAA-GGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3333516 GAA-GT--G--A-TGT--AGGGTCAAAGCTAACAAGTAGACTT
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * * *
3333551 GAGGTTAAGAATCTCTCCAAAGTCAAAGCCGATAGGCAGACTG
1 AAGG-TGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * **
3333594 AGGGTGAGAAAGTTTTCAAGGCCAAAGCCAATAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * ** *
3333636 AAGATGAGGTAGTCTCTAGGGCCAAAGCCAACAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3333677 AAGG-GTAGGAAAATCTCTAAGGTCAAAG-TCGACAGGCAAACTT
1 AAGGTG-A-GAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * ** * * * * * *
3333720 GAGATGAGGCAGTCTCCAGGGTCAATGCCGACAAGCA-AATT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * ** * *
3333761 GAGGGTAAGGAAGTCTCCGGGGTCAAAGCCGATAGGCA-AATT
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
**
3333803 GAAGGT-AGAAAAGTCTCCAAGGTCAAAG-TCGATAGAAAGACTT
1 -AAGGTGAG-AAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* *** * * ** * *
3333846 AAGATGAGGCGGTTTCCATA-GTAAAAAATGACAGACAGA-TT
1 AAGGTGAGAAAGTCTCCA-AGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3333887 GAGGGTAAGAAAGTCTCCAAGGTTAAAG-TCGACAAGCAAAC-T
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * *
3333929 AAGGGTAAGAAAATCTCCAAGGTCAAAGCTAACAAGCAGACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
** ** * *
3333972 GTGGTGAGGTAGTCTCCAAGGTCAAAG-TCGACAGGTAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* ** * * * *
3334013 AGGGAAAGAAAGTCT-CAAAGTTAAAACCGATAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * ** * **
3334054 GAGATAAGATAGTCTTTAGGGTCAAAGCCAATAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* *
3334095 AAGG-GTACGAAAGTCTCCAAGGTCAAAGCTGACAGGCAGA-AT
1 AAGGTG-A-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** ** * *
3334137 GAGGTGAGGCAGTCTTGAGGGTCAAAG-TCGACAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3334178 AATGGTAAAAAAATCTCCACGGTCAAAGCTAATAGGCAGGCTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * ** * * * * *
3334221 GAGATGAGGCAGTGTTTAGGGTCAAAGCCGACAGGTAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3334263 AGGGTAAGAAAGTTTTCAAGGTCAAAGCTGATAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * ** * * * * *
3334305 GAGGTGAGGCAGTCTCTAGGGTCAAAACCAACAAGTAAACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * * * * *
3334347 AGGGTAAGAAAGTATCTAGGGTCAAAGCCGACAAGTAAACTA
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* *
3334389 AAGGT-AGAAAAGTCT-CAAGGGGTCAAAG-TCGATAGACGGACTT
1 AAGGTGAG-AAAGTCTCCAA--GGTCAAAGCT-GATAGGCAGACTT
* * * *
3334432 GAGGTGAG---G--T--ATGGTCAAAGCTGACAGGTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * * *
3334467 GAGTGTAAGAATGTCTCTAGGGTCAAAG-TCGACAGGTAGAATG
1 AAG-GTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * * *
3334510 AGGGTAAGAAAGTTTCTAGGGTCAAAGCCGACAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * *
3334552 GAGATGATG-CAGTCT-CAAGGGTCAAAGCTAACTA-GCAGACTG
1 AAGGTGA-GAAAGTCTCCAA-GGTCAAAGCTGA-TAGGCAGACTT
* * * ** *
3334594 AGGGTGGGAAAATCTTAAAGGTCAAAG-TCGATAGGCAAACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * ** * * * * *
3334636 GAGATGAGGCAGTCTCAAAGGTCAAAGCCGATAAGTAGTC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3334677 AAGGGTAAGAAAGTTTCCATGGACAAAG-TCGATGGGCAAACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * * *
3334720 GAGGTTAGATAGTCTCCAAGGTCAAAGCCGACACGTAGA-TT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3334761 GAAGGTAAGAAAGTCTCTAGGGCCAAA-ATCGATAGGTAGACTT
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* ** * * * * * *
3334804 GAGGTGAGGTAGTCTCTAGGGTAAAAG-TCAATAAGCAGACCT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * *
3334846 GAGATGAGGCAA-TCTCTAAGGTCAAAGGTGACAGGCA-A---
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * ** * ** *
3334884 AGGGT-AGGAAAGTCTCTAGGGTCAAAGCCAACAAACAAACTT
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * **
3334926 GAGATGAGGCAA-TCTCCATGGTC-AAGGTCGATAGGCA-AAGT
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * *
3334967 AAGGGTAAAAAAGTCTCCAAGGTTAAAG-TCAGTAGGTAGACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGA-TAGGCAGACTT
* ** * * * * * *
3335010 GAGGTGAGGCAGTATCCAAGGTCATAGTTGACAAGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * *
3335052 AAGGTAAGAAAGTCTCCAAGGTCAATGCCAACAGGCATACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * *
3335094 AAGATGAGGTAGTCTCCATGGTCAAAGTTGGTAGGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * ** *
3335136 AGGGTAAAAAAGTCTCTAACATCAAAGTTGATAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * * *
3335178 AAGGTAAGGCAGTCTCTAGGGTCAAAGCTAATAGACAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * *
3335220 AGGGTAAGAAAGTCTCTAGGGTTAATGCTGATAGGCATACGTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGAC-TT
* ** *
3335263 AA-ATGAGGTAGTCTCCAAGGTCAAAG-TCGACAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * * * *
3335303 AGAGATGATG-CAGTCTCTAGGGTCCAAGCCGATAAGCA-AATT
1 A-AGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3335345 GAGTGTAAGAAAGTCACCAAGGTCAAAG-TCGAGAGCCAAACTT
1 AAG-GTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* ** * * *
3335388 GATGG-GAGGCAGTCTCCAGGGTCAAAG-TCAATAGGCAAAC-T
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * *
3335429 GAGG-GAAGAAAGTCTCCAAAGTCAATG-TCAATAGGCAGACTT
1 AAGGTG-AGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * ** * * *
3335471 GAGATAAGGTAGTCTCC-CGAGTCAAAGCAGATAGGAAGA-TT
1 AAGGTGAGAAAGTCTCCAAG-GTCAAAGCTGATAGGCAGACTT
* * * * * * * *
3335512 GAGG-GAAAAAAAGTCTCTAAGGTCAAAGTTGACAAGCAAACAT
1 AAGGTG--AGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** * ** * * * *
3335555 GAGGAGAGGCATTCTTGAGGGTCAAAGCCGATAGGCACACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3335597 ATGGTAAAAAAATCTCCAAGGTCAAAGCTAATAGGTAGACAT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * ** ** * * * *
3335639 GAGATGTGGCAGTCTTTAGGGTCAAAGCCGACAAGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3335680 AAGGGTAAAAAAGTTTCCAAGGTCAAAG-TCGACAGGCAGACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* ** * * * * * * *
3335723 GAGGTGAGGCAGTCTCTAGGGTCAAAG-TCGACAAGTAAACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * * * * *
3335765 AGGGTAAGAAAGTATCTAGGGTCAAAGCCGACAAGCAGACTA
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3335807 AAGGT-AGGAAAGTGT-CAAGGGTCAAAGCCGACAGACAGACTT
1 AAGGTGA-GAAAGTCTCCAA-GGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3335849 GAGGTGTG---G--T--AAGGTTAAAGTTGAAAAGTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3335884 GAGGGTAAGAATGTCTCTAGGGTCAAAGCCGATAGGCAGACTG
1 -AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * *
3335927 AGGGTGAGAAAGTTTTCAGGGTGAAAG-TCGATAGGAAAACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * * ** ** *
3335969 GAGATAAGGCAA-TCTCTAAGGTTAAAGCCAACCGGCAGGC-T
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3336010 AAGGCTAAGAAAATCTCCATGGTTAAAGTTGACAGGCAGACTT
1 AAGG-TGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * ** * * * *
3336053 GAGATAAGGCAGTCTCTAAAGTCAAAGCTGACAGGCAGTC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * *
3336094 AAGG-GCAAGAAAGTCTCCAAGGACAAAG-TCGA-CGAGCAAACTT
1 AAGGTG--AGAAAGTCTCCAAGGTCAAAGCT-GATAG-GCAGACTT
* * * * *
3336137 GAGGTTAGATAGTCTCCAAGGTCAAAGCCGATAGGCAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * *
3336179 AACGTAAGAAAGTCT-CTAGAGTCAAAG-TCGACAAGTAGACTT
1 AAGGTGAGAAAGTCTCCAAG-GTCAAAGCT-GATAGGCAGACTT
* ** * * * * *
3336221 GAGGTGAGGTAGTCTTCAAGGTCAAAGCCGACATGTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** *
3336263 AAGATGAGGTAGTCTCCAAGGTCAAAGGC-GACAGGCAG----
1 AAGGTGAGAAAGTCTCCAAGGTCAAA-GCTGATAGGCAGACTT
* * * * * * *
3336301 AGGGTAAGAAAGTCTCTAGGGTCAAAACTAATAGGCAAACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * * * * * *
3336343 GAGATGAGGCAA-TCTCCAGGGTCAAAACTGACAGGCAAACTA
1 AAGGTGA-GAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * **
3336385 AAGGTAAGAAAGTCTCCAAAGTCAAAGTTGATAGATAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * *
3336427 GAGGTGAGGCAGTCTCCAAGGTCAAAGCCGACAGACAGACTA
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3336469 AACGTAAGAAAGTCTCCAAGGTCAAAGCT-AGCAGGCAGACTC
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGA-TAGGCAGACTT
* * ** * * * **
3336511 GAGATGAGGTAGCCTTCAAGGTCAAAGTTGGCAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * * *
3336552 AAGGGTAAAAAAGTCTCC-AGTGTCAAAG-TCGACAGGTAGACTT
1 AA-GGTGAGAAAGTCTCCAAG-GTCAAAGCT-GATAGGCAGACTT
* * *** * *
3336595 GAGGTGA-AGCAGTCTCTGGGGTCAAAGCTGACATGCAGAC-T
1 AAGGTGAGA-AAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * *** **
3336636 AAGGGTAAAAAAGTCTCTGGGGTCAAAGCTGACCGGCAGACTT
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * **
3336679 GAGATGAGGCAGTCTCCAAGGTCAAAGCTGATAGGCAGAC-T
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* *** * * * *
3336720 AGAGATGAGGCGGTCTCTAAGGTTC-AAGCCGACAAGCAGA-TT
1 A-AGGTGAGAAAGTCTCCAAGG-TCAAAGCTGATAGGCAGACTT
* * * **
3336762 GAGGGTAAAAAAGT-TGCCAAGGTCAAAGCTGATAGTTAGACTT
1 -AAGGTGAGAAAGTCT-CCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * *
3336805 GAGGTGAGGTAGTCTCTAAGGTCAAAGCTGATAGGCCGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * * * *
3336847 AAGGTAAGAAAGTCTTTAGGGTTAAAGCTAACAAGTAGACTGT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACT-T
* ** * * * * *
3336890 -GGGAAAGAAAGTATCTAGGGTCAAAGCTGATAGGTAGACTG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* ** * * * *
3336931 AATGT-AGAAAAGTCTTGAGGGTCAAA-CCGACAGGCAAACTT
1 AAGGTGAG-AAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * *
3336972 AAGGTGAG---G--T--AGGGTCAAAGTTGATA-GTAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * *
3337006 AAGGGTAAGAATGTCTCCAAGGTCAAAG-TCGATAGGCAGACTG
1 AA-GGTGAGAAAGTCTCCAAGGTCAAAGCT-GATAGGCAGACTT
* * * * * * *
3337049 AGGGTAAGAAAGTTTCCAGGGTCAAAACCGACAGGCAGACTT
1 AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
* * ** *
3337091 GAGATGAGGTAGTCTCTAAGGTCAAAG
1 AAGGTGAGAAAGTCTCCAAGGTCAAAG
3337118 TCGACAAGTA
Statistics
Matches: 5187, Mismatches: 1808, Indels: 773
0.67 0.23 0.10
Matches are distributed among these distances:
27 5 0.00
28 2 0.00
29 3 0.00
30 4 0.00
32 2 0.00
34 20 0.00
35 150 0.03
36 37 0.01
37 16 0.00
38 73 0.01
39 11 0.00
40 37 0.01
41 345 0.07
42 4079 0.79
43 344 0.07
44 45 0.01
45 13 0.00
47 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (42 bp):
AAGGTGAGAAAGTCTCCAAGGTCAAAGCTGATAGGCAGACTT
Found at i:3331234 original size:84 final size:84
Alignment explanation
Indices: 3330919--3333347 Score: 921
Period size: 84 Copynumber: 29.1 Consensus size: 84
3330909 AAGTCTACAG
* * * * ** * *
3330919 GGTCAAAGCCAATAGGCAAACTTAAGGTAAGGCAGCCTCCAAGGTCAAAGCCGACAGGCAGAC-T
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
** ** *
3330983 GAGGCCAAGAAAGTCTAC-AG
66 GAGG-TGAGGCAGTCT-CTAA
* * * * * * * **
3331003 GGTCAAAGCCGACAGGCAGACTTGA-GATGAGGCAA-TCTCTAGGGTCAAAACCGACCGATAGAC
1 GGTCAAAGCCGATAGGCAGAC-TGAGGGT-AAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC
** * * * * *
3331066 TAAAGATGTGGTAGTCTTTAG
64 TTGAGGTGAGGCAGTCTCTAA
** * * * * * *
3331087 GGTCAAAGCTAACAGGCAAACTGAGGGTAAGAAAGTCGCCAAGGTCAAAGCCGATA-ACAAGACT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGC-AGACT
* **
3331151 TGAGGTGAGGTAGTCTCTGG
65 TGAGGTGAGGCAGTCTCTAA
* * * * * * *
3331171 GGTCAAAGTCAATAAGTAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
*
3331236 AAGGTGA-G--G---C-AA
66 GAGGTGAGGCAGTCTCTAA
* * * * * *
3331248 GGTCAAAGTCGACAGGCAGACTTAAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGAC-GGTAGACT
1 GGTCAAAGCCGATAGGCAGAC-TGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACT
* * *
3331312 TGAAGTGAAGCAGTCTCTAG
65 TGAGGTGAGGCAGTCTCTAA
** * * * * *
3331332 GGTCAAAGCCGATAGGTTGACTGAGGGTAAGAAAGTCTCTAGGGTCAAAGTCGAGAAGTAGACTT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* * *
3331397 GAGATGAGGTAGTCTCCAA
66 GAGGTGAGGCAGTCTCTAA
* * * *
3331416 GGTCAAAGCTGATAAGTAGACTGAGGGTAAGGAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC-T
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* ** *
3331480 GAAGGTAAGAAAGTCTCCAA
66 G-AGGTGAGGCAGTCTCTAA
* ** * * * * ** * * * *** *
3331500 GGTCAAAGTCGATAGAAAGACTTAAGATGAGGCAGT-TTTCATGGTAAAAAATGACAGACAGA-T
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCT-AAGGTCAAAGCCGACAGGCAGACT
* **
3331563 TGAGGGTAAGAAAGTCT-TCAA
65 TGA-GGTGAGGCAGTCTCT-AA
* * * * * * *
3331584 GTTCAAAGCCGCTAGGCAAACTCAGGGTAAGAAAGTCTCCAAGGACAAAGCTGACAGGCAGACTT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* *
3331649 GAGGTGAGGTAGTCTCTAG
66 GAGGTGAGGCAGTCTCTAA
* * * * *
3331668 GGTCAAAGCCGACAGGCAGATTGAGGG-AAGAAAGTCTCTAAAGTCAAAGCC-AGTAGGCAAACT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGA-CAGGCAGACT
* * *
3331731 TGAGATAAGGCAGTCTCCAA
65 TGAGGTGAGGCAGTCTCTAA
* * * * * * * *
3331751 GGTCAAAGCCAACAGGCAAATTGAGGGTAAGAAAGTCTCCAAGCTTAAAGCCGACAGGCAGACAT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
3331816 GAGGTGAGGCAGTCT-TGAA
66 GAGGTGAGGCAGTCTCT-AA
* * * * * * * * * ** * *
3331835 GGTTAAAGTCGACAAGTAGACTGATGGTAAAAAAATCTCCACA-GTCAAAGCTAATAGGCAGGCT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTA-AGGTCAAAGCCGACAGGCAGACT
* *
3331899 TGAGATGAGGCAGTCTCTAG
65 TGAGGTGAGGCAGTCTCTAA
* * * * *
3331919 GGTCAAAGCTGATAGGCAGACTGAGGTTAAGAAAGTTTCCAAGGTCAAAGCTGACAGGCAGACTT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* * *
3331984 GAGGTGAGGTAGTTTCTAG
66 GAGGTGAGGCAGTCTCTAA
* * * * * * * * * **
3332003 GGTCAAAGCCGACAAGTAAACTGAGGGTAAGAAAGTATCTAGGGTCAAAGCTGATAGGTA-AAAT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* *
3332067 GAAGGT-AGGAAAGTCTCTAG
66 G-AGGTGAGG-CAGTCTCTAA
* * * ** * * * * * *
3332087 GGTCAAAGTCAACAAACAGACTTAAGGT--G--AG---ATAGGGTCAAAGCTGACAGGTAGACTT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* * *
3332145 GAGG-GTAAGAATGTCTCTAG
66 GAGGTG-AGGCA-GTCTCTAA
* * * * *
3332165 GGTCAAAGCCGATAGGTAGACTAAGGGTAAGAAAGTTTCT-AGGATTAAAGCCAACAGGCAGACT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGG-TCAAAGCCGACAGGCAGACT
** * *
3332229 TGAAATGAGGTAGTGTC-AA
65 TGAGGTGAGGCAGTCTCTAA
* * * * * * * * * * *
3332248 GGGTTAAAGCCAACT-GGGAGACTGGGGGTAGGAAAATCTCCAAAGTCAAAGTCGACAGGGAAAC
1 -GGTCAAAGCCGA-TAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGAC
* *
3332312 TTGAGATGAGGCAGTCTCAAA
64 TTGAGGTGAGGCAGTCTCTAA
* * * ** * * * * ** *
3332333 GGTCAAAGCTGACAGGTAGTTTGAGGGTAAAAAAGTCTCCATGGACAAAGCCGATGGGCAAACTT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* * *
3332398 GAGGTTAGACAGTCTCCAA
66 GAGGTGAGGCAGTCTCTAA
* * * *
3332417 GGTCAAAGCC-ATCAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGTCGATC-GGTAGAC
1 GGTCAAAGCCGAT-AGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGA-CAGGCAGAC
* * * *
3332480 TTGAGGTTAGGTAGTCTTTAG
64 TTGAGGTGAGGCAGTCTCTAA
* * * * ** * * *
3332501 GGTCAAAGCCGACAAGCAGACTTGA-GATGAGGTAGTCT-TCAAGATCAAAGGCGACAGGTA-A-
1 GGTCAAAGCCGATAGGCAGAC-TGAGGGTAAGAAAGTCTCT-AAGGTCAAAGCCGACAGGCAGAC
* * * *
3332562 -AG-GGT-AGGAAAATCTCTAG
64 TTGAGGTGAGG-CAGTCTCTAA
* * * * * * * * * *
3332581 GGTCAAAGCCAACAAGCAGACTTGA-GATGAGGCAA-TCTCGATGGTCAAGGCCAACAGGCA-AG
1 GGTCAAAGCCGATAGGCAGAC-TGAGGGT-AAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGA-
* ** *
3332643 C-TAAGAGTGAGAAAGTCTCCAA
63 CTTGAG-GTGAGGCAGTCTCTAA
** * * ** * * * *
3332665 GGTCAAAAAATCAATAGGTAGACTTGA-GGTAAGGTAGTATCCAAGGTCAAAGTCGATAGGCAGA
1 GGTC--AAAGCCGATAGGCAGAC-TGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGA
* *
3332729 C-TGAAGGT-AAGAATGTCTCTAA
63 CTTG-AGGTGAGGCA-GTCTCTAA
* * * * * ** *
3332751 GGTCAATGCCGATAGGCAGGCTTAGGATGAGGTAGTCTCCT-AGGTCAAAGTCGACAGGCAGAC-
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCT-CTAAGGTCAAAGCCGACAGGCAGACT
* ** **
3332814 TGAGGGTAAGAAAGTCTCCGA
65 TGA-GGTGAGGCAGTCTCTAA
** * * * ** ** **
3332835 GGTCAAAGTTGACAAGCAGACTTGA-GGTGAGGTAGTCTCTAAGGTCAAAGTTGATGGGCAGAC-
1 GGTCAAAGCCGATAGGCAGAC-TGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACT
* * *
3332898 TGAGG-GTAGGAAAGTCCCTTA
65 TGAGGTG-AGG-CAGTCTCTAA
* ** * * * * * * *
3332919 GGTCAATGTTGATAGGCACACGTGA-GATAA-AGTAGTCTCTAGGGTCAAAGCTGACAAGCAAAC
1 GGTCAAAGCCGATAGGCAGAC-TGAGGGTAAGA-AAGTCTCTAAGGTCAAAGCCGACAGGCAGAC
* * * * * *
3332982 TAGAGATAAGACAATCTCTAG
64 TTGAGGTGAGGCAGTCTCTAA
* * * * * * *
3333003 GGTCTAAGCTGATAGGCAAATTGAGGGTACA-AAAGTCGCCAAGGTCAAAGCCGACAGCCAGACT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTA-AGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACT
* * *
3333067 TGAGGTGAAGCAGTCTTTAG
65 TGAGGTGAGGCAGTCTCTAA
** * * * * * * * *
3333087 GGTCAAAGTTGATAGGTAAATTGAGGG-AAGAAAGTTTCTAAAGTCAAAGTCGATAGGCAAACTT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* * **
3333151 GAGATAAGGCAGTCT-TCCG
66 GAGGTGAGGCAGTCTCT-AA
* * * * * * * *
3333170 GGTCAAAACAGACAGGCAGACCGAGGGTAAGAAATTCTCTAAGGTCAAAGTCGACAGGCAAACAT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
*
3333235 GAGGTGAGGCAGTCT-TGAG
66 GAGGTGAGGCAGTCTCT-AA
* * * * * * * * ** * *
3333254 GGTCAAAGCCGACAAGCACACTGACGGTAAAAAAATCTCCAGGGTCAAAGCTAATAGGCAGAATT
1 GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
* * ** *
3333319 GAGATGCGTTAGTCTCTAG
66 GAGGTGAGGCAGTCTCTAA
3333338 GGTCAAAGCC
1 GGTCAAAGCC
3333348 AACAAGCAAA
Statistics
Matches: 1767, Mismatches: 489, Indels: 178
0.73 0.20 0.07
Matches are distributed among these distances:
77 54 0.03
78 68 0.04
79 3 0.00
80 59 0.03
81 4 0.00
82 6 0.00
83 197 0.11
84 1250 0.71
85 71 0.04
86 52 0.03
87 3 0.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (84 bp):
GGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTT
GAGGTGAGGCAGTCTCTAA
Found at i:3331801 original size:125 final size:126
Alignment explanation
Indices: 3331552--3331812 Score: 298
Period size: 125 Copynumber: 2.1 Consensus size: 126
3331542 GGTAAAAAAT
* * *
3331552 GACAGACAGATTGAGGGTAAGAAAGTCTTCAAGTTCAAAGCCGCTAGGCAAACTCAGGGTAAGAA
1 GACAGGCAGATTGAGGGTAAGAAAGTCTTAAAGTTCAAAGCCGCTAGGCAAACTCAGGATAAGAA
** * * ** * * *
3331617 AGTCTCCAAGGACAAAGCTGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCC
66 AGTCTCCAAGGACAAAGCCAACAGGCAGAATTGAGGTAAGAAAGTCTCCAAGCTCAAAGCC
*
3331678 GACAGGCAGATTGAGGG-AAGAAAGTCTCTAAAG-TCAAAGCCAG-TAGGCAAACT-TGAGATAA
1 GACAGGCAGATTGAGGGTAAGAAAGTCT-TAAAGTTCAAAGCC-GCTAGGCAAACTCAG-GATAA
** * *
3331739 GGCAGTCTCCAAGGTCAAAGCCAACAGGCA-AATTGAGGGTAAGAAAGTCTCCAAGCTTAAAGCC
63 GAAAGTCTCCAAGGACAAAGCCAACAGGCAGAATTGA-GGTAAGAAAGTCTCCAAGCTCAAAGCC
3331803 GACAGGCAGA
1 GACAGGCAGA
3331813 CATGAGGTGA
Statistics
Matches: 114, Mismatches: 17, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
124 6 0.05
125 87 0.76
126 21 0.18
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.16
Consensus pattern (126 bp):
GACAGGCAGATTGAGGGTAAGAAAGTCTTAAAGTTCAAAGCCGCTAGGCAAACTCAGGATAAGAA
AGTCTCCAAGGACAAAGCCAACAGGCAGAATTGAGGTAAGAAAGTCTCCAAGCTCAAAGCC
Found at i:3334568 original size:163 final size:161
Alignment explanation
Indices: 3334282--3334578 Score: 375
Period size: 163 Copynumber: 1.8 Consensus size: 161
3334272 AAGTTTTCAA
* * *
3334282 GGTCAAAGCTGATAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTCAAAACCAACAAGTAAACTG
1 GGTCAAAGCTGACAGGCAGACTTGAGGTGAAGAAGTCTCTAGGGTCAAAACCAACAAGTAAACTG
* *
3334347 AGGGTAAGAAAGTATCTAGGGTCAAAGCCGACAAGTAAACTAAAGGTAGAAAAGTCTCAAGGGGT
66 AGGGTAAGAAAGTATCTAGGGTCAAAGCCGACAAGCAAACTAAAGATAGAAAAGTCTCAA-GGGT
3334412 CAAAGTCGATAGACGGACTTGAGGTGAGGTAT
130 CAAAGTCGATAGACGGACTTGAGGTGAGGTAT
* ** * *
3334444 GGTCAAAGCTGACAGGTAGACTTGA-GTGTAAGAATGTCTCTAGGGTCAAAGTCGACAGGTAGAA
1 GGTCAAAGCTGACAGGCAGACTTGAGGTG-AAGAA-GTCTCTAGGGTCAAAACCAACAAGTA-AA
* * * ** **
3334508 -TGAGGGTAAGAAAGTTTCTAGGGTCAAAGCCGACAGGCAGACTTGAGAT-GATGCAGTCTCAAG
63 CTGAGGGTAAGAAAGTATCTAGGGTCAAAGCCGACAAGCAAACTAAAGATAGA-AAAGTCTCAAG
3334571 GGTCAAAG
127 GGTCAAAG
3334579 CTAACTAGCA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
161 3 0.03
162 37 0.32
163 72 0.63
164 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.31, T:0.20
Consensus pattern (161 bp):
GGTCAAAGCTGACAGGCAGACTTGAGGTGAAGAAGTCTCTAGGGTCAAAACCAACAAGTAAACTG
AGGGTAAGAAAGTATCTAGGGTCAAAGCCGACAAGCAAACTAAAGATAGAAAAGTCTCAAGGGTC
AAAGTCGATAGACGGACTTGAGGTGAGGTAT
Found at i:3334949 original size:80 final size:80
Alignment explanation
Indices: 3334814--3334965 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 80
3334804 GAGGTGAGGT
* * * * *
3334814 AGTCTCTAGGGTAAAAGTCAATAAGCAGACCTGAGATGAGGCAATCTCTAAGGTCAAAGGT-GAC
1 AGTCTCTAGGGTAAAAGCCAACAAACAAACCTGAGATGAGGCAATCTCCAAGGTC-AAGGTCGAC
3334878 AGGCAAAGGGTAGGAA
65 AGGCAAAGGGTAGGAA
* * * *
3334894 AGTCTCTAGGGTCAAAGCCAACAAACAAACTTGAGATGAGGCAATCTCCATGGTCAAGGTCGATA
1 AGTCTCTAGGGTAAAAGCCAACAAACAAACCTGAGATGAGGCAATCTCCAAGGTCAAGGTCGACA
3334959 GGCAAAG
66 GGCAAAG
3334966 TAAGGGTAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
79 5 0.08
80 57 0.92
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.18
Consensus pattern (80 bp):
AGTCTCTAGGGTAAAAGCCAACAAACAAACCTGAGATGAGGCAATCTCCAAGGTCAAGGTCGACA
GGCAAAGGGTAGGAA
Found at i:3336569 original size:290 final size:290
Alignment explanation
Indices: 3336043--3336587 Score: 643
Period size: 290 Copynumber: 1.9 Consensus size: 290
3336033 TAAAGTTGAC
* * * * ** *
3336043 AGGCAGACTTGAGATAAGGCAGTCTCTAAAGTCAAAGCTGACAGGCAGTCTAAGGGCAAGAAAGT
1 AGGCAAACTTGAGATAAGGCAATCTCCAAAGTCAAAACTGACAGGCAAACTAAAGGCAAGAAAGT
* * * * *
3336108 CTCCAAGGACAAAGTCGACGAGCAAACTTGAGGTTAGATAGTCTCCAAGGTCAAAGCCGATAGGC
66 CTCCAAAGACAAAGTCGACGAGCAAACTTGAGGTGAGACAGTCTCCAAGGTCAAAGCCGACAGAC
* * * * * * *
3336173 AGACTGAACGTAAGAAAGTCTCTAGAGTCAAAGTCGACAAGTAGACTTGAGGTGAGGTAGTCTTC
131 AGACTAAACGTAAGAAAGTCTCAAGAGTCAAAGTAGACAAGCAGACTCGAGATGAGGTAGCCTTC
* * * ***
3336238 AAGGTCAAAGCCGACATGTAGACTTAAGATGAGGTAGTCTCCAAG-GTCAAAGGCGACAGGCAGA
196 AAGGTCAAAGCCGACAGGCAGACTTAAGATAAAAAAGTCTCC-AGTGTCAAAGGCGACAGGCAGA
3336302 GGGTAAGAAAGTCTCTAGGGTCAAAACTAAT
260 GGGTAAGAAAGTCTCTAGGGTCAAAACTAAT
* ** *
3336333 AGGCAAACTTGAGATGAGGCAATCTCCAGGGTCAAAACTGACAGGCAAACTAAAGGTAAGAAAGT
1 AGGCAAACTTGAGATAAGGCAATCTCCAAAGTCAAAACTGACAGGCAAACTAAAGGCAAGAAAGT
* * * *
3336398 CTCCAAAGTCAAAGTTGA-TAG-ATAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCCGACAG
66 CTCCAAAGACAAAGTCGACGAGCA-A-ACTTGAGGTGAGACAGTCTCCAAGGTCAAAGCCGACAG
*
3336461 ACAGACTAAACGTAAGAAAGTCTCCAAG-GTCAAAGCTAG-CAGGCAGACTCGAGATGAGGTAGC
129 ACAGACTAAACGTAAGAAAGTCT-CAAGAGTCAAAG-TAGACAAGCAGACTCGAGATGAGGTAGC
** * * *
3336524 CTTCAAGGTCAAAGTTGGCAGGCAGAC-TAAGGGTAAAAAAGTCTCCAGTGTCAAAGTCGACAGG
192 CTTCAAGGTCAAAGCCGACAGGCAGACTTAA-GATAAAAAAGTCTCCAGTGTCAAAGGCGACAGG
3336588 TAGACTTGAG
Statistics
Matches: 210, Mismatches: 39, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
288 1 0.00
289 8 0.04
290 196 0.93
291 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.18
Consensus pattern (290 bp):
AGGCAAACTTGAGATAAGGCAATCTCCAAAGTCAAAACTGACAGGCAAACTAAAGGCAAGAAAGT
CTCCAAAGACAAAGTCGACGAGCAAACTTGAGGTGAGACAGTCTCCAAGGTCAAAGCCGACAGAC
AGACTAAACGTAAGAAAGTCTCAAGAGTCAAAGTAGACAAGCAGACTCGAGATGAGGTAGCCTTC
AAGGTCAAAGCCGACAGGCAGACTTAAGATAAAAAAGTCTCCAGTGTCAAAGGCGACAGGCAGAG
GGTAAGAAAGTCTCTAGGGTCAAAACTAAT
Found at i:3337123 original size:42 final size:42
Alignment explanation
Indices: 3337011--3337145 Score: 119
Period size: 42 Copynumber: 3.2 Consensus size: 42
3337001 GACTTAAGGG
* * *
3337011 TAAGAATGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAGGG
1 TAAGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTGAGGA
* * **
3337053 TAAGAAAGTTTCCAGGGTCAAAACCGACAGGCAGACTTGA-GA
1 TAAGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGAC-TGAGGA
* ** * * * *
3337095 TGAGGTAGTCTCTAAGGTCAAAGTCGACAAGTAGACTGAGTA
1 TAAGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTGAGGA
*
3337137 AAAGAAAGT
1 TAAGAAAGT
3337146 ATATAGTGTC
Statistics
Matches: 69, Mismatches: 22, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
41 3 0.04
42 63 0.91
43 3 0.04
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (42 bp):
TAAGAAAGTCTCCAAGGTCAAAGTCGACAGGCAGACTGAGGA
Found at i:3337287 original size:246 final size:244
Alignment explanation
Indices: 3336870--3337377 Score: 642
Period size: 246 Copynumber: 2.1 Consensus size: 244
3336860 CTTTAGGGTT
* * * * * * * * * *
3336870 AAAGCTAACAAGTAGACTGTGGGAAAGAAAGTATCTAGGGTCAAAGCTGATAGGTAGACTGAATG
1 AAAGCCAACAAGTAGACTGAGGAAAAGAAAGTATATAGGGTCAAAACCGACAGGCAAACTGAAGG
* * * * * *
3336935 TAGAAAAGTCTTGAGGGTCAAACCGACAGGCAAACTTAAGGTGAGGTAGGGTCAAAGTTGATAGT
66 TAGAAAAGTCTCGAGGATCAAAACAACAAGCAAACTTAAGGTGAGGTAGGGTCAAAGTTGAAAGT
*
3337000 AGACTTAAGGGTAAGAATGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAGGGTAAGAAAG-TTT
131 AGACTTAAGGGTAAGAATGTCTCCAAGGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTTTT
* *
3337064 CCAGGGTCAAAACCGACAGGCAGACTTGAGATGAGGTAGTCTCTAAGGTC
196 CC-GGGTCAAAACCGACAAGCAGACTTGAGATGAGGCAGTCTCTAAGGTC
* * * * *
3337114 AAAGTCGACAAGTAGACTGAGTAAAAGAAAGTATATAGTGTCAAAACCGGCAGGCAAACTGAAGG
1 AAAGCCAACAAGTAGACTGAGGAAAAGAAAGTATATAGGGTCAAAACCGACAGGCAAACTGAAGG
* * *
3337179 TAGGAAAGTCTCGAGGATCAAATACAACAAGTAAACTTGAGGTGAGGTAGGGTCAAAGCTT-ACA
66 TAGAAAAGTCTCGAGGATCAAA-ACAACAAGCAAACTTAAGGTGAGGTAGGGTCAAAG-TTGA-A
* * * * *
3337243 AGTAGACTTGAGGGTAAGAATGTCTCCAGGGTCAAAGCCGATAGGGAGATTGAGGGTCAGAAAGT
128 AGTAGACTTAAGGGTAAGAATGTCTCCAAGGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGT
* * *
3337308 TTTTCGGGTCAAAGCCGACAAGCAGACTTGAGATGAGGCAGTCTCTAGGGTC
193 TTTCCGGGTCAAAACCGACAAGCAGACTTGAGATGAGGCAGTCTCTAAGGTC
*
3337360 AAAGCCAATAAGTAGACT
1 AAAGCCAACAAGTAGACT
3337378 AAGGGTAGAA
Statistics
Matches: 222, Mismatches: 38, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
244 69 0.31
245 31 0.14
246 118 0.53
247 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (244 bp):
AAAGCCAACAAGTAGACTGAGGAAAAGAAAGTATATAGGGTCAAAACCGACAGGCAAACTGAAGG
TAGAAAAGTCTCGAGGATCAAAACAACAAGCAAACTTAAGGTGAGGTAGGGTCAAAGTTGAAAGT
AGACTTAAGGGTAAGAATGTCTCCAAGGTCAAAGCCGATAGGCAGACTGAGGGTAAGAAAGTTTT
CCGGGTCAAAACCGACAAGCAGACTTGAGATGAGGCAGTCTCTAAGGTC
Found at i:3337758 original size:122 final size:122
Alignment explanation
Indices: 3337539--3337775 Score: 271
Period size: 122 Copynumber: 1.9 Consensus size: 122
3337529 TAAAGGTAAC
* * * * *
3337539 AAAGTCTGTAAGGTCAAAGCTAACAGGTAGACTTGAGGTGAGGTAGTCTCTAGGATCAAAGTCGA
1 AAAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTGAGATGAGGTAATCTCTAGGATCAAAGTCGA
* ** ** *
3337604 CAAGCAAACTTGAGATGAGGTAGTCTCCAAGGTCAAAGGCAACAGGTAGAGGGTAGG
66 CAAGCAAACTTGAGATAAGAAAACCTCCAAGGTCAAAGCCAACAGGTAGAGGGTAGG
* * * *
3337661 AAAGTCTCTAAGGTTAAAGCCAATAGGCAGACTTGAGATGAGGTAATCTCTAAGG-TCCACGTCG
1 AAAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTGAGATGAGGTAATCTCT-AGGATCAAAGTCG
* * * *
3337725 ACAGGCAAA-TTGAGGGTAAGAAAACCTCTAAGGTCAAAGCCAATAGGTAGA
65 ACAAGCAAACTTGA-GATAAGAAAACCTCCAAGGTCAAAGCCAACAGGTAGA
3337776 CTTGAGGTGA
Statistics
Matches: 94, Mismatches: 19, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
121 4 0.04
122 87 0.93
123 3 0.03
ACGTcount: A:0.36, C:0.16, G:0.28, T:0.20
Consensus pattern (122 bp):
AAAGTCTCTAAGGTCAAAGCCAACAGGCAGACTTGAGATGAGGTAATCTCTAGGATCAAAGTCGA
CAAGCAAACTTGAGATAAGAAAACCTCCAAGGTCAAAGCCAACAGGTAGAGGGTAGG
Found at i:3337914 original size:167 final size:168
Alignment explanation
Indices: 3337607--3338048 Score: 376
Period size: 167 Copynumber: 2.7 Consensus size: 168
3337597 AAGTCGACAA
* * * * * * * *
3337607 GCAAACTTGAGATGAGGTAGTCTCCAAGGTC-AAA--GGCA-ACAGGTAGAGGGTAGGAAAGTCT
1 GCAAACTTGAAATGAGGCAATCTCCAAGCTCAAAACCGACAGACAGATAGAAGGTAAGAAAGTCT
* * * * * * * * * * * *
3337668 CTAAGGTTAAAGCCAATAGGCAGACTTGAGATGAGGTAATCTCTAAGGTCC-ACGTCGACAGGCA
66 CCAAGGTCAAAGCTAACAAGCAGACTTGAGATAAGGCAGTCTCT-AGGGCCAAAGTCGATAGGTA
*** * * *
3337732 AATTGAGGGTAAGAAAACCTCTAAGGTCAAAGCCAATAG
130 AACCAAAGGTAAGAAAACCTCCAAGGTCAAAGCCAACAG
* * ** * ** *
3337771 GTAGACTTGAGGTGAGGCAATCTCCAAGGTCAAAGTCGACATACAGACT-GAAGGTAAGAAAGTC
1 GCAAACTTGAAATGAGGCAATCTCCAAGCTCAAAACCGACAGACAGA-TAGAAGGTAAGAAAGTC
* *
3337835 TCCAAGGTCAAAGC-AACAAGCAGACTTGAGATAAGGTAGTTTCTAGGGCCAAAGTCGATAGGTA
65 TCCAAGGTCAAAGCTAACAAGCAGACTTGAGATAAGGCAGTCTCTAGGGCCAAAGTCGATAGGTA
** *
3337899 AACCAAAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAG
130 AACCAAAGGTAAGAAAACCTCCAAGGTCAAAGCCAACAG
* * ** * * *
3337938 GCAAACTTGAAATGAGGCAGTCTCCAAGCTCAAAACCGATAGGTAGATAGAGGGTAAGAATGTTT
1 GCAAACTTGAAATGAGGCAATCTCCAAGCTCAAAACCGACAGACAGATAGAAGGTAAGAAAGTCT
* * *
3338003 CCAGGGTCAAAGCTGACAAGCAGACTTGAGATGAGGCAGTCTCTAG
66 CCAAGGTCAAAGCTAACAAGCAGACTTGAGATAAGGCAGTCTCTAG
3338049 AGTCAAAGCC
Statistics
Matches: 220, Mismatches: 50, Indels: 12
0.78 0.18 0.04
Matches are distributed among these distances:
164 26 0.12
165 2 0.01
166 6 0.03
167 128 0.58
168 57 0.26
169 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (168 bp):
GCAAACTTGAAATGAGGCAATCTCCAAGCTCAAAACCGACAGACAGATAGAAGGTAAGAAAGTCT
CCAAGGTCAAAGCTAACAAGCAGACTTGAGATAAGGCAGTCTCTAGGGCCAAAGTCGATAGGTAA
ACCAAAGGTAAGAAAACCTCCAAGGTCAAAGCCAACAG
Found at i:3338169 original size:42 final size:42
Alignment explanation
Indices: 3337415--3340179 Score: 662
Period size: 42 Copynumber: 66.6 Consensus size: 42
3337405 ATCAGCAGGC
* * * ** *
3337415 AGTCTCCAAGGTCAAAGCCGACAGGTAGTTTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
** * * * * * **
3337457 AGTCTCTAAAGACAAAGCTGACGGGCAAACTTAAGGTTTGACA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGA-A
* * * * * *
3337500 A-TCTCCAAGCTCAAAGTCGACAGGCAGACTAAAGGTAACAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * ** * * **
3337541 AGTCTGTAAGGTCAAAGCTAACAGGTAGACTTG-AGGTGAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * **
3337583 AGTCTCTAGGATCAAAGTCGACAAGCAAACTTG-AGATGAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
3337625 AGTCTCCAAGGTCAAAGGCAACAGGTAGA--G--GGTAGGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
3337663 AGTCTCTAAGGTTAAAGCCAATAGGCAGACTTG-AGATGAGGTA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGT-AAGAA
* * * * * * *
3337706 A-TCTCTAAGGTCCACGTCGACAGGCAAATTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
** * * * * * *
3337747 AACCTCTAAGGTCAAAGCCAATAGGTAGACTTG-AGGTGAGGCA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGT-AAGAA
* * * **
3337790 A-TCTCCAAGGTCAAAGTCGACATACAGACTGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * **
3337831 AGTCTCCAAGGTCAAAG-CAACAAGCAGACTTG-AGATAAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * **
3337872 AGTTTCTAGGGCCAAAGTCGATAGGTAAACCAAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * **
3337914 AGTCTCCAAGGTCAAAGCCGACAGGCAAACTTGAA-ATGAGGC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * *
3337956 AGTCTCCAAGCTCAAAACCGATAGGTAGA-TAGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACT-GAAGGTAAGAA
* * * * * * * **
3337998 TGTTTCCAGGGTCAAAGCTGACAAGCAGACTTG-AGATGAGGC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * *
3338040 AGTCTCTAGAGTCAAAGCCGACAAGCAGATTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * * * * ** *
3338082 CGTCGCCAAGGTCAAAGCCAACAGCCAAACTTACGGTGGGGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* *
3338124 AGTCTCTAGGGTCAAAGCTGACAGGCTGACTGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * *
3338166 AGTCTCCATGGTCAAAGCCAATAGGCAGACTTG-AGGT--G-A
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
*
3338205 AG---C-AGGGTTAAAGCCGACAGGCAGACTTGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* ** * **
3338244 AGT-TTTCAGGGTCAAAGCCGGTAGGCAGACTTG-AGGTGAGGC
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
3338286 AGTCTCCATGGTCAACGCCAAAAGGCAGACTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * **
3338328 AATCTCTAGGGTCAAAGCCGACAGGCAGACTTAAGATGAGGC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * *
3338370 AGTCTCCAAGGTCAAAGCCAATAGGTAGACTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * *
3338412 AGTCTCCT-TGGTCAAAGCCGACAGGTAAACTCAAGGTAGGAA
1 AGTCT-CTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * * * * **
3338454 AGTCTCCAGGTTTAAAGTCGATAAGAAGACTTG-AGATGAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* ** ** * *
3338496 AGT-TTTCAAAGTCAAAAACGATAGGCAGACTGAGGGTAAGAA
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * ** * * * * *
3338538 AGTCTCAAAGGTCAAAGCTAACAGGTAGACTTAAGATGATG-T
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGT-AAGAA
* * * ** *
3338580 AGTCTCTAAGGTCAAAACCGATAGAAAGACTGAGGGTAAG-A
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* ** *
3338621 AGTCTCCTA-GGTCAAAGCCGATAAACAAACATG-AGGT--G-A
1 AGTCT-CTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* ** * * **
3338660 GGT-T-T--GGTCAAAGTTGACAAGTAGACTTGGGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
3338699 TGTGTCTAGGGTTAAAGCTGACAGGTAGACTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * **
3338741 AATCT-TCAAGGTCCAAGCCGATAGGCTGACTTG-AGATAAGGC
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
3338783 AGACTCCAGGGTCAAAGCTGGCAAGCAGACTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * ** * * **
3338825 AGTCTC-CGGGCTAAAAG-TTA-A--TAGA-TG-AGGTTAGGC
1 AGTCTCTAGGG-TCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * *
3338861 AGTTTCCAGGGTAAAAGCCG--AGGCAAACTGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * **
3338901 GGTCTCTAGGGCCAAAGCCGATAGGCAGGCTTAAGGTAAGCT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * ** **
3338943 TGTCTCCAAGGTCAAAGCCGATAGGCAGACTTAAGACAAGCT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * **
3338985 AGCCTCCAGTGTCAAAGCCGATAAGCAGACT-AAGGGCAGAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAG-AA
* * * ** * * * * *
3339027 AATCTCTAAGGTTAAAATCGACTGGCAAACTTAAGGTGAGGA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * *
3339069 GGTCTAC-AGGGTCAAATCCAACACGCAGACTTG-AGGT-TGAA
1 AGTCT-CTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
** * * * *
3339110 TAGTCTCTAGGGTCAAAGCCGGTAGTCAAACTGATGGTGAGAA
1 -AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
** * * * **
3339153 AAACTCTAGGGTCAAAGCCAACAGGC-GAACTTG-AGATGAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAG-AC-TGAAGGTAAGAA
* *
3339195 AGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * ** * *
3339237 AGTTTCCAAGGTCAAAGTTGATAGGCAGACTTGAA-G-AGAGAT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTA-AGAA
* * * ** * * *
3339279 AGTTTCAAAGGTCAAATTCGACAGGTAAACTAAAGGTAA-AA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * ** * * * *
3339320 TAGTCTCCAAGGTCAAAGCTAATAGGCAAACTGAGGGTTAGAA
1 -AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * **
3339363 AGTCTCCAAGGTCAAAGCCGACAAGCAGGCTTAAGGTTAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * ** * * * *
3339405 AGTCTCCAAGGTCAAAGTTGATAGGAAAACTGAAGATAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * **
3339447 AGTCTGTAGGGTCAAAGCTGACAGGCAGACTTAAGGTGAGGC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
3339489 AGTCTCCAAGGTTAAAGCCAATAGGCAGATTAAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * *
3339531 AGTCTTTAGGGTCAAAGCCGAAAGGCAGGCTGAGGGTCAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * *
3339573 AATCTCTAAGGTCAAAGCCAACAAGCAGACTTGAA-GTGAGGCA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGT-AAGAA
* * * * * *
3339616 A-TCTCCCA-GTTCATAGCCGATAGGTAGATTGAAGGTAAGAA
1 AGTCT-CTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * *
3339657 AGTCTCCATGGTCAAAGCTGATAGGCAGACTTG-A-G-ATG--
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* *
3339695 AG---GTAGGGTCAAAGCCGACAAGCAGACCTGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGA-CTGAAGGTAAGAA
* * * * * **
3339735 AGCCTCTAGGGTCAAAGTCAACAAGCAGACTTG-AGGTGAGGC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
*** * * * *
3339777 AGTCTCTAGGGTCAAAGTTAATAGGCAGACTTG-ATGTTAGAT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * * *
3339819 TGTCTCCAAGGTCAAAGCCGACCGGCAAACTTAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * *
3339861 AGCCTCCAGGGTTAAAGCCGACAAGCTGACTGAAGGAAAAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * * * **
3339903 AGTCTCTAGGGTCAAAGGCAACAGGAAGACTTATGGTGAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * * * **
3339945 AGTCTCTACGGTCAAAGCCGACAGGTAGACTTG-AGATGAGGT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* ** * * * * * *
3339987 AGTCTCCAATGTCAAAGACGACAGGTAGACTTATGGTGAGGCA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGT-AAGAA
* * * * *
3340030 A-TCTCCAAGGTCAAAGCCAACAGGCAGATTAACAGG-AAGAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGA-AGGTAAGAA
* * * * *
3340071 AATCTCGAAGGTCAAAGCCGACAGGTAGACTTGAAGGTAAAAA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAA
* * * * * *
3340114 AGTCT-TCAAGGTCAGAGCTGATAGGTAGACTGAGGGTAAGAA
1 AGTCTCT-AGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
* * *
3340156 AGTGTCTAAGGTCAAAGCCAACAG
1 AGTCTCTAGGGTCAAAGCCGACAG
3340180 AAAAACTAAA
Statistics
Matches: 1930, Mismatches: 684, Indels: 218
0.68 0.24 0.08
Matches are distributed among these distances:
35 59 0.03
36 28 0.01
37 6 0.00
38 39 0.02
39 16 0.01
40 29 0.02
41 123 0.06
42 1472 0.76
43 157 0.08
44 1 0.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (42 bp):
AGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
Found at i:3339759 original size:43 final size:42
Alignment explanation
Indices: 3339698--3339794 Score: 122
Period size: 43 Copynumber: 2.3 Consensus size: 42
3339688 TGAGATGAGG
* *
3339698 TAGGGTCAAAGCCGACAAGCAGACCTGAAGGTAAGAAAGCCTC
1 TAGGGTCAAAGTCAACAAGCAGACCTG-AGGTAAGAAAGCCTC
* * ** *
3339741 TAGGGTCAAAGTCAACAAGCAGACTTGAGGTGAGGCAGTCTC
1 TAGGGTCAAAGTCAACAAGCAGACCTGAGGTAAGAAAGCCTC
3339783 TAGGGTCAAAGT
1 TAGGGTCAAAGT
3339795 TAATAGGCAG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 23 0.49
43 24 0.51
ACGTcount: A:0.34, C:0.20, G:0.30, T:0.16
Consensus pattern (42 bp):
TAGGGTCAAAGTCAACAAGCAGACCTGAGGTAAGAAAGCCTC
Found at i:3341659 original size:79 final size:78
Alignment explanation
Indices: 3341440--3341675 Score: 249
Period size: 79 Copynumber: 2.9 Consensus size: 78
3341430 ATATTTCCCG
* * * *
3341440 ATGAGAAATTTAATATTTTGGAGATAATAACGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTT
1 ATGAGAAA-TCAATATTTTGGAAATAA-AACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTT
* *
3341505 GGAGTATCCCCGATT
64 AGAGTATCCCCAATT
* * * * * * * *
3341520 GTGAAAAAAATCGATGA-TTAGAAAATAGAATCGGGATTGGAGTATCCCCTCAGAAATAACGGGG
1 ATG--AGAAATCAAT-ATTTTGGAAATA-AAACGGGGTTGGAGTATCCCCTCGGAAATAACGGGG
3341584 TTAGAGTATCCCCAATT
62 TTAGAGTATCCCCAATT
* **
3341601 ATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTA
1 ATGAGAAATCAATATTTTGGAAATAAA-ACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTA
3341666 GAGTATCCCC
65 GAGTATCCCC
3341676 GATGAAATAA
Statistics
Matches: 126, Mismatches: 24, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
78 3 0.02
79 58 0.46
80 2 0.02
81 57 0.45
82 6 0.05
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (78 bp):
ATGAGAAATCAATATTTTGGAAATAAAACGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTAG
AGTATCCCCAATT
Found at i:3341840 original size:51 final size:51
Alignment explanation
Indices: 3341689--3341910 Score: 237
Period size: 51 Copynumber: 4.3 Consensus size: 51
3341679 GAAATAACAA
* * * *
3341689 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTG--TTTTGGAAATAAAACCGG
* * * * *
3341742 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTAGTGTTTTGGAAATAAAACCGG
* * * *
3341794 GGTTGGAGTATCCCTGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCGA
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGG
* * * * * * *
3341845 GGTTGGAGCATCCCCGATTATGAGAAATCAATATTTTGGGAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGG
3341896 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
3341911 TCGGAGGTAA
Statistics
Matches: 140, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
51 79 0.56
52 33 0.24
53 17 0.12
54 11 0.08
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTGTTTTGGAAATAAAACCGG
Found at i:3341950 original size:28 final size:28
Alignment explanation
Indices: 3341893--3341969 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
3341883 GGAATAAAGC
*** **
3341893 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAGACAA
3341921 CGGGGTTGGAGTATCCCCGATGAGACAA
1 CGGGGTTGGAGTATCCCCGATGAGACAA
* * *
3341949 CGAGGTGGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
3341970 TATGAAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.21, C:0.21, G:0.38, T:0.21
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAGACAA
Found at i:3342016 original size:52 final size:51
Alignment explanation
Indices: 3341956--3342055 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 51
3341946 CAACGAGGTG
* * *
3341956 GGAGTATCCTCGATTAT-GAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTT
1 GGAGTATCCCCGATTATAG-AAAATTAGTG-TTTTGAAAATAAAATCGGAGTT
3342008 GGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGA
3342056 ATGAGAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
51 18 0.41
52 25 0.57
53 1 0.02
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (51 bp):
GGAGTATCCCCGATTATAGAAAATTAGTGTTTTGAAAATAAAATCGGAGTT
Found at i:3342067 original size:51 final size:52
Alignment explanation
Indices: 3341960--3342074 Score: 137
Period size: 51 Copynumber: 2.2 Consensus size: 52
3341950 GAGGTGGGAG
* * * * *
3341960 TATCCTCGATTATGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAG
1 TATCCCCGATTATGAAAAATTAGTGTTTTTGAAAATAAAATCGGAGATGGAA
3342012 TATCCCCGATTAT-AGAAAATTAGTG-TTTTGAAAATAAAATCGGA-ATGAGAA
1 TATCCCCGATTATGA-AAAATTAGTGTTTTTGAAAATAAAATCGGAGATG-GAA
*
3342063 TATCCCCAATTA
1 TATCCCCGATTA
3342075 CGGAGAATTG
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
50 2 0.04
51 32 0.58
52 21 0.38
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.32
Consensus pattern (52 bp):
TATCCCCGATTATGAAAAATTAGTGTTTTTGAAAATAAAATCGGAGATGGAA
Found at i:3344460 original size:13 final size:13
Alignment explanation
Indices: 3344442--3344467 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3344432 CAAAGAATAG
3344442 ATGTATCGATACA
1 ATGTATCGATACA
3344455 ATGTATCGATACA
1 ATGTATCGATACA
3344468 CAAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3344604 original size:21 final size:22
Alignment explanation
Indices: 3344578--3344635 Score: 102
Period size: 21 Copynumber: 2.7 Consensus size: 22
3344568 GTTGGGACCC
3344578 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACATTTGTACGAA
3344599 TGTATCGATACATTT-TACGAA
1 TGTATCGATACATTTGTACGAA
3344620 TGTATCGATACATTTG
1 TGTATCGATACATTTG
3344636 GATAATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.06
21 33 0.94
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (22 bp):
TGTATCGATACATTTGTACGAA
Found at i:3344730 original size:11 final size:10
Alignment explanation
Indices: 3344706--3344730 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
3344696 TCGACTTAAC
3344706 AAAAAGTCAT
1 AAAAAGTCAT
3344716 AAAAAGTCAT
1 AAAAAGTCAT
3344726 AAAAA
1 AAAAA
3344731 TCTAAACACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.08, G:0.08, T:0.16
Consensus pattern (10 bp):
AAAAAGTCAT
Found at i:3345539 original size:47 final size:47
Alignment explanation
Indices: 3345470--3345716 Score: 273
Period size: 55 Copynumber: 4.9 Consensus size: 47
3345460 GACTTAAAGG
*
3345470 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCACTTTGAGGA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGA
*
3345517 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT---GA--G---GA
3345572 TGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGA
1 TGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGA
3345619 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTT---GA--GG---A
* * *
3345674 TGCCACCAACTTGTGTGGGCTTCGAAAGGGGTCCTACTCTTTG
1 TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTG
3345717 GGGACTGAAA
Statistics
Matches: 175, Mismatches: 6, Indels: 33
0.82 0.03 0.15
Matches are distributed among these distances:
47 78 0.45
48 4 0.02
50 5 0.03
52 6 0.03
54 2 0.01
55 80 0.46
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (47 bp):
TGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGA
Found at i:3345602 original size:29 final size:28
Alignment explanation
Indices: 3345517--3345602 Score: 72
Period size: 26 Copynumber: 3.1 Consensus size: 28
3345507 ACTTTGAGGA
3345517 TGCCACCAACTTGTGTGGGCTTTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAGG
** * *
3345546 TGTCCTGC-TCTT-TG-GGGAC-TGAAAGG
1 TG-CCACCAACTTGTGTGGG-CTTTAAAGG
3345572 TGCCACCAACTTGTGTGGGCTTTAAGAGG
1 TGCCACCAACTTGTGTGGGCTTTAA-AGG
3345601 TG
1 TG
3345603 TCCTGCTCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
25 3 0.07
26 10 0.24
27 7 0.17
28 9 0.21
29 10 0.24
30 3 0.07
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.29
Consensus pattern (28 bp):
TGCCACCAACTTGTGTGGGCTTTAAAGG
Found at i:3345837 original size:59 final size:59
Alignment explanation
Indices: 3345619--3347490 Score: 2421
Period size: 59 Copynumber: 32.0 Consensus size: 59
3345609 TCTTTGAGGA
* **
3345619 TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
* * * *
3345674 TGCCACCAACTTGTGTGGGC-TT---CG-AAAGGGGTCCTACTCTTTGGGGACTGAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* *
3345729 TGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * * *
3345789 TGCCACCAACTCGGGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
*
3345848 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTACTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
*
3345907 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
*
3345966 TTCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGT-CTCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT-GCTCTTTGAGGACTGAAGG
* *
3346025 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGATTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
*
3346084 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * *
3346143 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCATCCCGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
**
3346202 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
*
3346262 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTAGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
* **
3346322 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCTGCTCTTTGAGGACTGGAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
*
3346382 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTAGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
*
3346443 TGCCACCAACTTGTGTGGGCTTT-----AAAAGGTGTCCTGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * **
3346497 TGCCACCAACTTATGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGATTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* * * *
3346557 TGCCACCAACTTGTGTGGGCTTTAAATGGAGAAGGCGTCCTGCTATTTGAGGACAGGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAA-AGAAAAGGCGTCCTGCTCTTTGAGGAC--TGAAGG
* *
3346618 TGCCACCAAGTTGTGTGGGCTTT-----AAAAGGTGTCCTGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* *
3346672 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTATTTGAGGACTGGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
*
3346733 TGCCACCAACTTGTGTGGGCTTT-----AAAAGGTGTCCTGCTCTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* **
3346787 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGAAAAA
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTG-AAGG
* *
3346847 TGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCCTGCTCTTTGAGGACTAGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
* *
3346908 TGCCACTAACTTGTGTGGGCTTT-----AAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* *
3346962 TGCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTTTTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* *
3347022 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCCTTGAGGACTGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* *
3347081 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCTTTGAGGACTGGAAAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
*
3347141 TGCCACTAACTTGTGTGGGCTTT-----AAAAGGCGTCCTGCTCTTTGAGGACTAGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
* * *
3347196 TGCTACCAACTTGTGTAGGCTTTAAAAAGAGAAGGCGTCCTGCTCTTTGAGGACTGGGAA-G
1 TGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
* *
3347257 TGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCTTGCTCTTTGAGGACTAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
*
3347311 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAGGTGTCCTGCTCTTTGAGGACTGGGAA-G
1 TGCCACCAACTTGTGTGGGCTTTAAAA-G--AAAAGGCGTCCTGCTCTTTGAGGACT--GAAGG
*
3347374 TGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCCTGCTCTTTGAGGACTAAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
* * *
3347428 TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAAGTGTCCTGCTCTTTAAGGACTGGAAGG
1 TGCCACCAACTTGTGTGGGCTTTAAAA-G--AAAAGGCGTCCTGCTCTTTGAGGACT-GAAGG
3347491 GCTAAAAGAG
Statistics
Matches: 1625, Mismatches: 112, Indels: 152
0.86 0.06 0.08
Matches are distributed among these distances:
53 15 0.01
54 143 0.09
55 253 0.16
56 6 0.00
58 1 0.00
59 556 0.34
60 322 0.20
61 239 0.15
62 58 0.04
63 30 0.02
64 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (59 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGGACTGAAGG
Found at i:3345906 original size:118 final size:118
Alignment explanation
Indices: 3345391--3347490 Score: 2531
Period size: 118 Copynumber: 18.2 Consensus size: 118
3345381 ATAAAGTGTA
* * *
3345391 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT----G-AAAGGTGTCCTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* *
3345451 CTCTTTGAGGACTTAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
65 CTCTTTGAGGAC-TGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
3345501 TCCTGCACTTTGA-G---G-A--TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
* *
3345554 TCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTG
66 TCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
3345603 TCCTGCTCTTTGA-G---G-A--TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
** * *
3345656 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGC-TT---CG-AAAGGGG
66 TCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * * *
3345705 TCCTACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCT
* * *
3345770 GCTCTTTGAGGACTGAAGGTGCCACCAACTCGGGTGGGCTTTAAAAGAAAAGGCA
64 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
3345825 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTAC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
3345890 TCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
66 TCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
3345943 TCCCGCTCTTTGAGGACTGAAGGTTCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGT-CTCG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT-G
3346007 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
65 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
3346061 TCCCGCTCTTTGAGGATTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
* *
3346126 TCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCA
66 TCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
3346179 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
**
3346244 TCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
66 TCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* *
3346298 TCCCGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCT
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
** *
3346362 GCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
64 GCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
*
3346419 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGTGTCCT
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
*
3346478 GCTCTTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAGGCG
64 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* ** * *
3346533 TCCTGCTCTTTGAGGATTGAAAAATGCCACCAACTTGTGTGGGCTTTAAATGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAA-AGAAAAGGCGTCCT
* * * *
3346598 GCTATTTGAGGACAGGGAA-GTGCCACCAAGTTGTGTGGGCTTT-----AAAAGGTG
64 GCTCTTTGAGGAC--TGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
3346649 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTG
* *
3346714 CTATTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGTG
65 CTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
*
3346764 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
** * *
3346829 TCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
66 TCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
*
3346884 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACTAACTTGTGTGGGCTTT-----AAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
* *
3346943 GCTCTTTGAGGACTAAAGGTGCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCG
64 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCG
* *
3346999 TCCTGCTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGC
1 TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
*
3347064 TCCTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
66 TCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
* * *
3347117 TCCCGCTCTTTGAGGACTGGAAAGTGCCACTAACTTGTGTGGGCTTT-----AAAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTG
* * *
3347177 CTCTTTGAGGACTAGGAA-GTGCTACCAACTTGTGTAGGCTTTAAAAAGAGAAGGCG
65 CTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCG
*
3347233 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCTT
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
* *
3347292 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAGGTG
64 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-G--AAAAGGCG
3347350 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT
* * *
3347409 GCTCTTTGAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAAGTG
64 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-G--AAAAGGCG
*
3347467 TCCTGCTCTTTAAGGACTGGAAGG
1 TCCTGCTCTTTGAGGACT-GAAGG
3347491 GCTAAAAGAG
Statistics
Matches: 1814, Mismatches: 108, Indels: 129
0.88 0.05 0.06
Matches are distributed among these distances:
100 1 0.00
101 3 0.00
102 181 0.10
103 2 0.00
104 1 0.00
106 1 0.00
108 1 0.00
109 1 0.00
110 35 0.02
112 2 0.00
113 7 0.00
114 148 0.08
115 287 0.16
116 182 0.10
117 145 0.08
118 390 0.21
119 164 0.09
120 155 0.09
121 102 0.06
122 6 0.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (118 bp):
TCCTGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
TCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
Found at i:3346559 original size:175 final size:173
Alignment explanation
Indices: 3345391--3347490 Score: 2406
Period size: 175 Copynumber: 12.1 Consensus size: 173
3345381 ATAAAGTGTA
** * * *
3345391 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-GAAAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCT
* * *
3345455 TTGAGGACTTAAAGGTGCCACCAACTTGTGTGGGCTTT--AAG---AGGTGTCCTGCACTTTGA-
66 TTGAGGAC-TGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAG
*
3345514 G---G--A-TGCCACCAACTTGTGTGGGCTTT----GAAAGGTG
130 GACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCG
* * * *
3345548 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCT
*
3345612 TTGA-G---G-A--TGCCACCAACTTGTGTGGGCTTT----G-AAAGGTGTCCTGCTCTTTGAGG
66 TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGG
* * *
3345665 ACTGGAAAATGCCACCAACTTGTGTGGGC-TT---CGAAAGGGG
131 ACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCG
* * * * *
3345705 TCCTACTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT----A-AAAAGGCGTCCT
* * * *
3345770 GCTCTTTGAGGACTGAAGGTGCCACCAACTCGGGTGGGCTTTAAAAGAAAAGGCATCCCGCTCTT
61 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTT
*
3345835 TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
126 TGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAGGCG
* *
3345884 TCCTACTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT---A-AAAAGGCGTCCTG
*
3345948 CTCTTTGAGGACTGAAGGTTCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGT-CTCGCTCTT
62 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCT-GCTCTT
*
3346012 TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
126 TGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAGGCG
* * *
3346061 TCCCGCTCTTTGAGGA-TTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT---A-AAAAGGCGTCCTG
* * *
3346125 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCATCCCGCTCTTT
62 CTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTT
*
3346190 GAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
127 GAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAGGCG
** *
3346238 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT---A-AAAAGGCGTCCTG
*
3346303 CTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAAGCGTCCTGCTCT
62 CTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCT
*
3346367 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
125 TTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GA-AAGGCG
*
3346419 TCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAGGTGTCCTGCTC
1 TCCTGCTCTTTGAGGACT-GGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTC
*
3346482 TTTGAGGACTGAAGGTGCCACCAACTTATGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAG
65 TTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAG
* * *
3346547 GATTGAAAAATGCCACCAACTTGTGTGGGCTTTAAATGGAGAAGGCG
130 GACTG-AAAGTGCCACCAACTTGTGTGGGCTTTAAA-AGA-AAGGCG
* * * *
3346594 TCCTGCTATTTGAGGACAGGGAA-GTGCCACCAAGTTGTGTGGGCTTT-AAAAGGTGTCCTGCTC
1 TCCTGCTCTTTGAGGAC-TGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTC
* *
3346657 TTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTATTTGA
65 TTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCTTTGA
* *
3346722 GGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---A-AAAGGTG
129 GGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCG
*
3346764 TCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCG
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT---A-AAAAGGCGTCCTG
** * *
3346828 CTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTGTCCTGCTCT
62 CTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAA-GAAAAGGCGTCCTGCTCT
* *
3346893 TTGAGGACTAGGAAGTGCCACTAACTTGTGTGGGCTTT---A-AAAGGCG
125 TTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCG
* *
3346939 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTCTGTGGGCTTTAAAAGGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT---A--AAAAGGCGTCCT
* * *
3347003 GCTTTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCCGCTCCT
61 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTT
*
3347068 TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
126 TGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG-AAAGGCG
* * *
3347117 TCCCGCTCTTTGAGGACTGGAAAGTGCCACTAACTTGTGTGGGCTTT-AAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCT
* * *
3347181 TTGAGGACTAGGAA-GTGCTACCAACTTGTGTAGGCTTTAAAAAGAGAAGGCGTCCTGCTCTTTG
66 TTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGAAAAGGCGTCCTGCTCTTTG
*
3347245 AGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTT---A-AAAGGCG
128 AGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCG
* * *
3347288 TCTTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAGGTGTC
1 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-------AAAAAGGCGTC
3347352 CTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTT-----AAAAGGCGTCCTGC
59 CTGCTCTTTGAGGACT--GAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGC
* *
3347411 TCTTTGAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAAAAGTG
122 TCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAA-G---AAAGGCG
*
3347467 TCCTGCTCTTTAAGGACTGGAAGG
1 TCCTGCTCTTTGAGGACTGGAAGG
3347491 GCTAAAAGAG
Statistics
Matches: 1739, Mismatches: 118, Indels: 149
0.87 0.06 0.07
Matches are distributed among these distances:
147 1 0.00
149 40 0.02
150 1 0.00
151 1 0.00
154 1 0.00
156 4 0.00
157 136 0.08
163 17 0.01
164 1 0.00
167 1 0.00
168 4 0.00
169 23 0.01
170 69 0.04
171 48 0.03
172 25 0.01
173 51 0.03
174 99 0.06
175 412 0.24
176 128 0.07
177 304 0.17
178 162 0.09
179 121 0.07
180 38 0.02
181 48 0.03
182 4 0.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (173 bp):
TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGGCGTCCTGCTCT
TTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCGTCCTGCTCTTTGAGG
ACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCG
Found at i:3353783 original size:42 final size:42
Alignment explanation
Indices: 3353748--3354226 Score: 180
Period size: 42 Copynumber: 11.5 Consensus size: 42
3353738 GTCTCTAGGC
* * * *
3353748 TCAAAGCCGATAGGCAGACTTGAGGGAAGGCAGTCTCCAATG
1 TCAAAGCCAACAGGCAGACTTGAGGGAAGGAAGTCTCCAAGG
* * * * * *
3353790 TCAAGGCCGACAGGCAGACTAG-GGGTAGGAAAGTCACCAGGG
1 TCAAAGCCAACAGGCAGACTTGAGGGAAGG-AAGTCTCCAAGG
* * * *
3353832 TCAAAGCCAACAGGCACACTTAAGGTAAGGTAGTCTCCAAGG
1 TCAAAGCCAACAGGCAGACTTGAGGGAAGGAAGTCTCCAAGG
* * *
3353874 TCAAAGCCAATAGGCAAACTT-AGGGTAA-GAAGGTCTACC-GGG
1 TCAAAGCCAACAGGCAGACTTGAGGG-AAGGAA-GTCT-CCAAGG
** *** *
3353916 T-TGAG--GTTAGGCAGACTTGAGGAGAA-GCAGTCTCC-AGG
1 TCAAAGCCAACAGGCAGACTTGAGG-GAAGGAAGTCTCCAAGG
* * **
3353954 TTCAAAGCCGACAGGTAGAC-TGAGGGTAAAAAAGTCT-CAAGGG
1 -TCAAAGCCAACAGGCAGACTTGAGGG-AAGGAAGTCTCCAA-GG
**** * * * ** * *
3353997 TCAAAATTGACATGTAGACTTGAGATGAA-GTTGTCTCTATA-A
1 TCAAAGCCAACAGGCAGACTTGAG-GGAAGGAAGTCTCCA-AGG
* * * * *
3354039 TCAAAGCCGACAGGCAGAC-TGAGGGCAGAAAAGTATCTAAGG
1 TCAAAGCCAACAGGCAGACTTGAGGGAAG-GAAGTCTCCAAGG
* ** *
3354081 TCAAAGCCAACAAGCAGACTTGAAATG-AGGCAGTCTCCAAGG
1 TCAAAGCCAACAGGCAGACTTG-AGGGAAGGAAGTCTCCAAGG
* ** *
3354123 TCAAAGCCAACAGGCAGAC-TAAGGGTAAAAAAGACTCCAAGG
1 TCAAAGCCAACAGGCAGACTTGAGGG-AAGGAAGTCTCCAAGG
** * * * ***
3354165 TCAAAGCTGACAGGTAGACTTGAGGTAAGGTAGTCTCTGGGG
1 TCAAAGCCAACAGGCAGACTTGAGGGAAGGAAGTCTCCAAGG
* *
3354207 GCAAAGCCGACAGGCAGACT
1 TCAAAGCCAACAGGCAGACT
3354227 GAAGGTAAGA
Statistics
Matches: 320, Mismatches: 90, Indels: 54
0.69 0.19 0.12
Matches are distributed among these distances:
38 4 0.01
39 15 0.05
40 14 0.04
41 28 0.09
42 231 0.72
43 24 0.08
44 4 0.01
ACGTcount: A:0.35, C:0.19, G:0.29, T:0.17
Consensus pattern (42 bp):
TCAAAGCCAACAGGCAGACTTGAGGGAAGGAAGTCTCCAAGG
Found at i:3353847 original size:84 final size:84
Alignment explanation
Indices: 3353695--3354226 Score: 316
Period size: 84 Copynumber: 6.4 Consensus size: 84
3353685 GAGGTGAGGT
* * * * * ** * * * *
3353695 AGTCGCCAAGGTCAAAGACGATAGACAAACTAAAGGTAAAAAAGTCTCTAGGCTCAAAGCCGATA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGGGGTAAAAAAGTCACCAGGGTCAAAGCCGACA
3353760 GGCAGACTTGAGGGAAGGC
66 GGCAGACTTGAGGGAAGGC
* * ** *
3353779 AGTCTCCAATGTCAAGGCCGACAGGCAGACTAGGGGTAGGAAAGTCACCAGGGTCAAAGCCAACA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGGGGTAAAAAAGTCACCAGGGTCAAAGCCGACA
* * * *
3353844 GGCACACTTAAGGTAAGGT
66 GGCAGACTTGAGGGAAGGC
* * * * * ** *
3353863 AGTCTCCAAGGTCAAAGCCAATAGGCAAACTTA-GGGTAAGAAGGTCTACC-GGGT-TGAG--GT
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TAGGGGTAAAAAAGTC-ACCAGGGTCAAAGCCGA
*
3353923 TAGGCAGACTTGAGGAGAA-GC
64 CAGGCAGACTTGAGG-GAAGGC
* * * ***
3353944 AGTCTCC-AGGTTCAAAGCCGACAGGTAGACT-GAGGGTAAAAAAGTCTCAAGGGTCAAAATTGA
1 AGTCTCCAAGG-TCAAAGCCGACAGGCAGACTAG-GGGTAAAAAAGTCACCAGGGTCAAAGCCGA
* * * *
3354007 CATGTAGACTTGAGATGAA-GT
64 CAGGCAGACTTGAG-GGAAGGC
* * * * * * * *
3354028 TGTCTCTATA-ATCAAAGCCGACAGGCAGACT-GAGGGCAGAAAAGT-ATCTAAGGTCAAAGCCA
1 AGTCTCCA-AGGTCAAAGCCGACAGGCAGACTAG-GGGTAAAAAAGTCA-CCAGGGTCAAAGCCG
* **
3354090 ACAAGCAGACTTGAAATG-AGGC
63 ACAGGCAGACTTG-AGGGAAGGC
* * * * * *
3354112 AGTCTCCAAGGTCAAAGCCAACAGGCAGACTAAGGGTAAAAAAGACTCCAAGGTCAAAGCTGACA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGGGGTAAAAAAGTCACCAGGGTCAAAGCCGACA
* * *
3354177 GGTAGACTTGAGGTAAGGT
66 GGCAGACTTGAGGGAAGGC
*** *
3354196 AGTCTCTGGGGGCAAAGCCGACAGGCAGACT
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACT
3354227 GAAGGTAAGA
Statistics
Matches: 335, Mismatches: 93, Indels: 40
0.72 0.20 0.09
Matches are distributed among these distances:
80 5 0.01
81 50 0.15
82 3 0.01
83 5 0.01
84 265 0.79
85 6 0.02
86 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.29, T:0.17
Consensus pattern (84 bp):
AGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGGGGTAAAAAAGTCACCAGGGTCAAAGCCGACA
GGCAGACTTGAGGGAAGGC
Found at i:3354234 original size:84 final size:84
Alignment explanation
Indices: 3353955--3354271 Score: 266
Period size: 84 Copynumber: 3.8 Consensus size: 84
3353945 GTCTCCAGGT
* * * ** *
3353955 TCAAAGCCGACAGGTAGACTGAGGGTAAAAAAGTCT-CAAGGGTCAAAATTGACATGTAGACTTG
1 TCAAAGCCGACAGGCAGACTGAAGGTAAAAAAGACTCCAA-GGTCAAAGCTGACAGGTAGACTTG
* *
3354019 AGATGAA-GTTGTCTCTATA-A
65 AGAT-AAGGTAGTCTCTA-AGG
* * * * ** * *
3354039 TCAAAGCCGACAGGCAGACTGAGGGCAGAAAAGTA-TCTAAGGTCAAAGCCAACAAGCAGACTTG
1 TCAAAGCCGACAGGCAGACTGAAGGTAAAAAAG-ACTCCAAGGTCAAAGCTGACAGGTAGACTTG
* * * *
3354103 AAATGAGGCAGTCTCCAAGG
65 AGATAAGGTAGTCTCTAAGG
*
3354123 TCAAAGCCAACAGGCAGACT-AAGGGTAAAAAAGACTCCAAGGTCAAAGCTGACAGGTAGACTTG
1 TCAAAGCCGACAGGCAGACTGAA-GGTAAAAAAGACTCCAAGGTCAAAGCTGACAGGTAGACTTG
* **
3354187 AGGTAAGGTAGTCTCTGGGG
65 AGATAAGGTAGTCTCTAAGG
* * * * * * * *
3354207 GCAAAGCCGACAGGCAGACTGAAGGTAAGAAAGCCTCTAGGGTCATAGTTGATAGGTAGACTTGA
1 TCAAAGCCGACAGGCAGACTGAAGGTAAAAAAGACTCCAAGGTCAAAGCTGACAGGTAGACTTGA
3354272 AGTGTCAATT
Statistics
Matches: 184, Mismatches: 42, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
83 4 0.02
84 176 0.96
85 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (84 bp):
TCAAAGCCGACAGGCAGACTGAAGGTAAAAAAGACTCCAAGGTCAAAGCTGACAGGTAGACTTGA
GATAAGGTAGTCTCTAAGG
Found at i:3354272 original size:168 final size:168
Alignment explanation
Indices: 3353942--3354251 Score: 385
Period size: 168 Copynumber: 1.8 Consensus size: 168
3353932 TTGAGGAGAA
* * * * *
3353942 GCAGTCTCCAGGTTCAAAGCCGACAGGTAGACTGAGGGTAAAAAAGTCTCAAGGGTCAAAATTGA
1 GCAGTCTCCAGGTTCAAAGCCAACAGGCAGACTAAGGGTAAAAAAGACTCAAGGGTCAAAACTGA
* * * * *
3354007 CATGTAGACTTGAGATGAAGTTGTCTCTATAATCAAAGCCGACAGGCAGACTGAGGGCAGAAAAG
66 CAGGTAGACTTGAGATGAAGTAGTCTCTAGAAGCAAAGCCGACAGGCAGACTGAGGGAAGAAAAG
*
3354072 TATCTAAGGTCAAAGCCAACAAGCAGACTTGAAATGAG
131 CATCTAAGGTCAAAGCCAACAAGCAGACTTGAAATGAG
*
3354110 GCAGTCTCCAAGG-TCAAAGCCAACAGGCAGACTAAGGGTAAAAAAGACTCCAA-GGTCAAAGCT
1 GCAGTCTCC-AGGTTCAAAGCCAACAGGCAGACTAAGGGTAAAAAAGACT-CAAGGGTCAAAACT
* * ** *
3354173 GACAGGTAGACTTGAGGT-AAGGTAGTCTCTGGGGGCAAAGCCGACAGGCAGACTGAAGGTAAG-
64 GACAGGTAGACTTGAGATGAA-GTAGTCTCTAGAAGCAAAGCCGACAGGCAGACTG-AGGGAAGA
* *
3354236 AAAGCCTCTAGGGTCA
127 AAAGCATCTAAGGTCA
3354252 TAGTTGATAG
Statistics
Matches: 119, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
167 2 0.02
168 106 0.89
169 11 0.09
ACGTcount: A:0.36, C:0.19, G:0.28, T:0.17
Consensus pattern (168 bp):
GCAGTCTCCAGGTTCAAAGCCAACAGGCAGACTAAGGGTAAAAAAGACTCAAGGGTCAAAACTGA
CAGGTAGACTTGAGATGAAGTAGTCTCTAGAAGCAAAGCCGACAGGCAGACTGAGGGAAGAAAAG
CATCTAAGGTCAAAGCCAACAAGCAGACTTGAAATGAG
Found at i:3355459 original size:13 final size:13
Alignment explanation
Indices: 3355441--3355467 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3355431 AAATTTCCCA
3355441 AATGTATCGATAC
1 AATGTATCGATAC
3355454 AATGTATCGATAC
1 AATGTATCGATAC
3355467 A
1 A
3355468 TTTCCTTGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:3355523 original size:19 final size:19
Alignment explanation
Indices: 3355499--3355561 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
3355489 AGTGATACAT
3355499 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
3355518 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
3355531 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
3355550 TGTATCGATACA
1 TGTATCGATACA
3355562 GTTACTTGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
14 1 0.03
16 6 0.16
18 1 0.03
19 21 0.55
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:3355533 original size:32 final size:32
Alignment explanation
Indices: 3355492--3355561 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
3355482 GCTTCATAGT
3355492 GATACATTGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAACACTTATGTATC
3355524 GATACATTGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAACACTTATGTATC
3355556 GATACA
1 GATACA
3355562 GTTACTTGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.33
Consensus pattern (32 bp):
GATACATTGTATCGATACAACACTTATGTATC
Found at i:3355536 original size:13 final size:13
Alignment explanation
Indices: 3355518--3355542 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3355508 ACAACACTTA
3355518 TGTATCGATACAT
1 TGTATCGATACAT
3355531 TGTATCGATACA
1 TGTATCGATACA
3355543 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3355965 original size:42 final size:42
Alignment explanation
Indices: 3355917--3355998 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 42
3355907 AGGGTATGAA
*
3355917 AGTCTCCAAGGTAAAAATCGACAAGCAAACTTGAGGTGAGAC
1 AGTCTCCAAGGTAAAAATCGACAAGCAAACTTAAGGTGAGAC
* * * *
3355959 AGTCTCCAAGGTCAAAGTCGACAGGCAGACTTAAGGTGAG
1 AGTCTCCAAGGTAAAAATCGACAAGCAAACTTAAGGTGAG
3355999 GCAAGGTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.37, C:0.20, G:0.27, T:0.17
Consensus pattern (42 bp):
AGTCTCCAAGGTAAAAATCGACAAGCAAACTTAAGGTGAGAC
Found at i:3356079 original size:78 final size:77
Alignment explanation
Indices: 3355923--3356079 Score: 181
Period size: 78 Copynumber: 2.0 Consensus size: 77
3355913 TGAAAGTCTC
* * * *
3355923 CAAGGTAAAAATCGACAAGCAAACTTGAGGTGAGACAGTCTCCAAGGTCAAAGTCGACAGGCAGA
1 CAAGGTAAAAATCGACAAGCAAACTTGAGGTAAGAAAGTCACCAAGGTCAAAGTCGACAAGCAGA
*
3355988 CTTAAGGTGAGG
66 CTTAAGGTAAGG
* * * ** *
3356000 CAAGGTTAAAGTCGACAGGCAAACTTGAAGGTAAGAAAGTCACCTGGGTCAAA-TCCGACAAGTA
1 CAAGGTAAAAATCGACAAGCAAACTTG-AGGTAAGAAAGTCACCAAGGTCAAAGT-CGACAAGCA
*
3356064 GACTTGAGGTAAGG
64 GACTTAAGGTAAGG
3356078 CA
1 CA
3356080 GTCTCCAAGG
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
77 25 0.38
78 41 0.62
ACGTcount: A:0.38, C:0.18, G:0.28, T:0.17
Consensus pattern (77 bp):
CAAGGTAAAAATCGACAAGCAAACTTGAGGTAAGAAAGTCACCAAGGTCAAAGTCGACAAGCAGA
CTTAAGGTAAGG
Found at i:3356127 original size:42 final size:42
Alignment explanation
Indices: 3356081--3356181 Score: 96
Period size: 42 Copynumber: 2.4 Consensus size: 42
3356071 GGTAAGGCAG
*
3356081 TCTCCAAG-GTCAACGCCAAAAGGCAGACTGAGGGTAAGAAAA
1 TCTCC-AGTGTCAAAGCCAAAAGGCAGACTGAGGGTAAGAAAA
* * * * * *
3356123 TCTCCAGTGTTAAAGTCGACAGGCAGATTGAGGGTAAGAAAG
1 TCTCCAGTGTCAAAGCCAAAAGGCAGACTGAGGGTAAGAAAA
* * *
3356165 TCTTCGGGGTCAAAGCC
1 TCTCCAGTGTCAAAGCC
3356182 GACTGGGGAC
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
41 2 0.04
42 44 0.96
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.18
Consensus pattern (42 bp):
TCTCCAGTGTCAAAGCCAAAAGGCAGACTGAGGGTAAGAAAA
Found at i:3356242 original size:125 final size:127
Alignment explanation
Indices: 3356004--3356246 Score: 292
Period size: 125 Copynumber: 1.9 Consensus size: 127
3355994 GTGAGGCAAG
* * *
3356004 GTTAAAGTCGACAGGCAAACTTGAAGGTAAGAAAGTCACCTGGGTCAAATCCGACAAGTAGACTT
1 GTTAAAGTCGACAGGCAAACTTGAAGGTAAGAAAGTCACCGGGGTCAAAGCCGACAAGGAGACTT
* * * * *
3356069 GAGGTAAGGCAGTCTCCAAGGTCAACGCCAAAAGGCAGACTGAGGGTAAGAAAATCTCCAGT
66 GAGATAAGGCAATCTCCAAGGTCAAAGCCAAAAGGCAGACTAAAGGTAAGAAAATCTCCAGT
* * ** * *
3356131 GTTAAAGTCGACAGGCAGA-TTGAGGGTAAGAAAGTCTTCGGGGTCAAAGCCGAC-TGGGGACTT
1 GTTAAAGTCGACAGGCAAACTTGAAGGTAAGAAAGTCACCGGGGTCAAAGCCGACAAGGAGACTT
** * * * *
3356194 GAGATGTGGCAATCTCTAGGGTCAAAGCCGATAGGCAGACTAAAGGTAAGAAA
66 GAGATAAGGCAATCTCCAAGGTCAAAGCCAAAAGGCAGACTAAAGGTAAGAAA
3356247 GTTTCTAGGG
Statistics
Matches: 96, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
125 48 0.50
126 30 0.31
127 18 0.19
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.18
Consensus pattern (127 bp):
GTTAAAGTCGACAGGCAAACTTGAAGGTAAGAAAGTCACCGGGGTCAAAGCCGACAAGGAGACTT
GAGATAAGGCAATCTCCAAGGTCAAAGCCAAAAGGCAGACTAAAGGTAAGAAAATCTCCAGT
Found at i:3356374 original size:42 final size:42
Alignment explanation
Indices: 3356171--3379498 Score: 2198
Period size: 42 Copynumber: 557.5 Consensus size: 42
3356161 AAAGTCTTCG
* * * *
3356171 GGGTCAAAGCCGACT-GG-GGACTTGAGATGTGGCAATCTCTA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * ** *
3356212 GGGTCAAAGCCGATAGGCAGACTAAAGGTAAGAAAGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3356254 GGGTC--AGCCGACAGGCATACTTGAGGTGAGGCAGTCGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * * *** *
3356294 AGGTCAAAGACGATAAACAAAC-TAAGGGTAACAAAGTCTCTG
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
*
3356336 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * ** *
3356378 ATGTCAAAGCCGACAGGCAGAC-TAAGGGTTG-GAAAGTCACTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GG-TGAGGCAGTCTCTA
* * * * * ** * * *
3356420 GGGTTAAAGCCAACAGGAACACTCAAGGTAAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *** *
3356462 AGGTCAAAGCCGATCGGCAAACTT-AGG-GTAAAAAGGTCTAC-C
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCT-CTA
** * * *
3356504 GGGT-TTAG--GTTAAGCAGACTTGAGGAGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ***
3356543 GGGTCAAAGCCAATAGGTAGAC-TGAGGGTAAAAAAGTCT-TAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCT-A
* * * ** * * **
3356585 GGGTCAAAGTCGACATGTGGACTTAAGATGAGGTTGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
*** * * ** *
3356627 CAATCAAAGCCGACAGGCAGA-TTGAGGGTAAGAAAGTCTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * *
3356669 GGGTTAAAGCCAACAAGCAGACTTGAGATGAGGTTA-TCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGG-CAGTCTCTA
*** * * ** * * *
3356711 CAATCAAAGCTGACAGATAGA-TTGAGG-GTAGGAAAGCCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* ** * * * **
3356753 AGGTCAAAGCTAACAAGCAGACTTGAGATGAGGCAGTCTCCC
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * ** *
3356795 GGGTCAAAGCCGGCAGGCATAC-TAACGGTAAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * *
3356837 AGGTCAAAGCCGACAGGCAGACTTGAGGTAAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * **
3356879 AGGTCAAAGCCGACAGGCACAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
** * ** * * *
3356921 GGGTCATTGTCGGCAGGCAGACTTAAGGTGAGGTAGTCTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *
3356963 GGATCAAAGATGATAGGTAGAC-GGAAGGT-AGGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGG-CAGTCTCTA
* * * *
3357005 GGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCAGTTTGTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * **
3357047 GTGTCAAAGCCGACAGGCAGAC-TGAGG-GCAAGAAAGTCT-TAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG--AGGCAGTCTCT-A
* * * * * *
3357089 GGGTCAAAGTCGACAAGCAGACATAAGGTTAGAG-AGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAG-GCAGTCTCTA
* * * * * * *
3357131 GGGTCAAAGTCCGCAT-GTATCAATACATTGACGTGAGGTATTCGCCA
1 GGGTCAAAG-CCG-ATAG--GC-AGAC-TTGAGGTGAGGCAGTCTCTA
* * * * * ***
3357178 AGGTCAAAGACGATAGACAAAC-TGAGGGTAACAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * *
3357220 AGGTCAAAGTCGATAAGCAGACTTGAGGTGAGGTAGCCTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * *
3357262 GGGTCAAAGATGACAGGTAGA-TTGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
*
3357304 GGGTCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3357346 GTGTCAAAGCTGGTAGGCAAAC-TGAGGGTAAGAAAGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCT-A
* * **
3357388 AGGTCAAAGCCGACAGGCAGAC-TGAGG-GCAAGAAAGTCT-TAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG--AGGCAGTCTCT-A
* * * * *
3357430 GGGTCAAAGTCGACAGGCAAACATGAGGTTG-GAG-AGTCTCTT
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGAG-GCAGTCTCTA
* * * * *** *
3357472 GGGTCAAAGTCGACAGGCAGACTTAAGGTAAAAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3357514 GGGTCAAAGCCAATAAGAAGACTTGAGGTGAGG-TGTTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAG-TCTCTA
* * * * *
3357556 GGGTCAAAACTGATAGGCAGACTTAAGATGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * ** *
3357598 GTGTCAAAATCGACAGG-AGAC-TAAGG-GTAGAAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AG-GCAGTCTCTA
* * * *
3357639 GGGTCAAAGCCAATTA-GCAGACTTGAGATGTGGCAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * *
3357681 AGGTCAAAGCCAACAGGCAGAC-TGAAGGTAAGAAAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
** * * ** * * * *
3357723 ATGTCATAGCCGACAGATAGACTTAAGGTAAGGTAGT-TGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * * * *
3357765 AGGCCAAAGACGACAGGTAGAC-TGAGG-GTAGGAAAGCCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * *
3357807 GGGTTAAAGTCGACAGGCAGACTTGAGGTGAAGCAGAT-TTTG
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAG-TCTCTA
* * ** *
3357849 GGGTCAAAGCCGATAGGCAGA-ATGATGGTAAGAAAATCT-TA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * * *
3357890 GGATCAAAGCCAACT-GTCACACTTGAGATGAAGTAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * *** *
3357932 GGGCCAAAGTTGATAGGCAGA-GTAAGGATGAAAAAGTTTC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * * * * * *
3357973 AGGTCAAAGTCAAAAAGCAAACTTGAGGTAAGGCAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** * * *** * *
3358015 TGGTCAAAGCAGACAAACAAAC-TGAGGGTAAAAAAGTCGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * * * ** *
3358057 AGGTCAAAGCTAAAAGGGAAACTTGAGACGAGACAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * ** *
3358099 GGGTCAAAGCCGACAGGCAGGCTAAAGGTAAGAAAGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * *
3358141 GGGGT-AAAGCCGACAGGCAGACTTGA-GTTA---AG---GTA
1 -GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * *
3358176 AGGTCAAAACCGATAGGTAGACTTGAGGGTAAGAAAGTTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * * * * **
3358219 GGGTCAAAGCTGGCAAGTAGATTTCAGGTGAGATAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3358261 GGGTCAAAGTCGACAGGGAGA-TTAAGTGTCAGAAATTC-CTC
1 GGGTCAAAGCCGATAGGCAGACTTGAG-GTGAGGCAGTCTCTA
* * * * *
3358302 GGTGTCAAAGCCGACTA-GTAGACTTAAGATTAGGTAGTCTCCTA
1 GG-GTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * ** * *
3358346 -GGTCAAAGCCAACAGGTAGAC-TGAAGGTAAGAAAAT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCT-A
* * * * ** *
3358387 AGGTCAAAGCCAATAGGCAGACTTGTGATGAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3358429 AGGTCAAAGCC-AGCAGGCAGACTTGATGCT-AGACAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * ** * *
3358471 AGGTCAAAGCCGATAGGCAGACTT-AGGGTAAGAAAGCCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * ** * *
3358513 GAGTCAAAGCTGACAAGCAGAC-TAATGGTAAGAAAGTATATA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * *
3358555 GGGTCAAAGCTGACAGACAAACTTAAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *
3358597 GGGTCAAAGTCGGCAAGTAGACTTGAGATAAGGCAGTC-CTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTC-TA
* * * * ** *
3358639 GTGTCAAAGTCGACAGGCAGAC-TAACGGT-ATGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGA-GGCAGTCTCTA
* * * * * *
3358681 AGGTCAAAACCGACAAGCAGAATTGAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3358723 AGGTCAAAGTCGACAAGCAGACTTGAGGT-A---AG---GTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** * *
3358758 GGGTCAAAGTCGACT-GGCAAACTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGA-TAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * *
3358801 GGGTCAAAGCCGACAAGTAGACTTGAGGTAAGGCAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *** * ** * *
3358843 AGGTCAACGCCAAGAAATAGAC-TAAGG-GAAAGAAAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG--AGGCAGTCTCTA
* * ** *
3358885 GTGTCAAAGCCGATAGGCAGAC-TAAGG-GTAGAAAAGTCT-TCG
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AG-GCAGTCTCT-A
** * *
3358927 GGGTCAAAGCCGACT-GGCAGACTTGAGACGTGGCAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3358969 AGGTCAAAGTCGATATGCAGACTTAAGGT-AAGAATATTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCA-GTCTCTA
* * * * * * * *
3359011 TGGTCATAGTCGACAAGCATACTTGAGGTGAAGTAGT-TCATCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTC-T-A
*** ** * * * *** *
3359054 AACTCAAAGATGATAGACAAAC-TGAGGGTAACAAAGTCTATA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * *
3359096 GGGTCAAAGTTGATAGGCAGACTTGAGGTGAGGTAGTCTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** ** *
3359138 GGGTCAAAGATGATAGGCAGACTAAAGGT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGG-CAGTCTCTA
**
3359180 GGGTCAAAGTTGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * ** *
3359222 GTGTCAAAGCTAATAGGCAAAC-TGAGGGTAAGAAAGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCT-A
* * * * ** *
3359264 AGGTCAAAGTCGACAGGCAAAC-TGAGG-GCAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG--AGGCAGTCTCTA
* * * * * *** *
3359306 AGCTTAAAGTCGACAGGCAGACAAAAGGTTAGAG-AGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAG-GCAGTCTCTA
* * * *** *
3359348 GGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAAAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * *
3359390 GGGTCAAAGCCGACAAGAATACTTGAGGTGAGG-TGCTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAG-TCTCTA
*** * * *
3359432 GGGTCAAAATTGACAGGCAGACTTAAGATGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3359474 GTGTCAAAACTGAAAGG-AGAC-TAAGG-GTAGAAAAGTCT-TCG
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AG-GCAGTCTCT-A
* * * *
3359515 GGGTCAAAGCCAATTA-GCAGACTTGAGTTGTGGCAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3359557 AGGTCAAAGCCAACAGGCAGAC-TGAAGGTAAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * ** * * * *
3359599 GTGTCATAGCTAACAGACAGACTTGAGGTGAGGTAGT-TGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * * * * *
3359641 AGGTCAAAGACAACAAGTAGAC-TGAGGAT-AGGAAAGCCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGAGG-CAGTCTCTA
* * * * *
3359683 GGGTCAAAGCCAATTGGCAGACTTGAGATGAAGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *** * * *
3359725 AGGTCAAAGCTGATAGGTAGA-GTAAGGGTGAAAAACTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3359767 AGGTCAAAGTCAAAAAGCAAACTTGAGGTAAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * ** * *
3359809 TGGTCGAAGCAGACAAACAGAC-TGAGGGTAAGAAAGTCGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * ** *
3359851 AGGTCAAAGCTGACAGGGAAACTTGAGACGAGGCAGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * **
3359893 AGGTCAAAGCCGACAGGCAGAC-CGATGGTGAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * *
3359935 GGGGCAAAGCCGACAAGCAAACTTGAGTTGA---AG----TA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3359970 GGGTCAAAACTGATAGGTAGTCTTGAGGGTAAGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * *
3360013 GGGTCAAAGCCGGTAAGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3360055 GGGTCCAAGTCGGTAGGCAGA-TTGAGTATAAGAAATTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAG-GTGAGGCAGTCTCTA
* * * * * * *
3360097 GTGTCAAAGCCAATAAGTAGACTTGAGATGAGGCAGTCGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3360139 GGGTCAAAGCCAACAGGCAGAC-TGAAGGT-AAGAAAACTTCGA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTC-TCTA
** * * * *
3360181 ATGTCAAAGCCAATAGGCAGACTTGAGATGAGACAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3360223 AGGTCAAAACCAACAAGCAGACTTGATGCT-AGACAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * ** *
3360265 AGGTCAAAGCCGATAAGAAGACTT-AGGGTAAGAAAG-CTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTC-TCTA
* * * ** * ** * *
3360307 GGGTCAAAGCTGACAAGCAGACTAAAGGTAAGAAAGTATGTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3360349 GGGTTAAAGCCGATAGGCAAACTTAAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * * *
3360391 GGTTCAAAGTCGGCAGGTAGACTTGAGATAAGGCAGTGT-TA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * ** * * * ** *
3360432 CATGTTAAAGTTGACAAGCAGAC-TAAGG-GTATGAAAGTCTCCA
1 -GGGTCAAAGCCGATAGGCAGACTTGAGGTG-A-GGCAGTCTCTA
* * * * * *
3360475 AGGTCAAAACCGACAAGCAGAATTGAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3360517 AGGTGAAAGTCGACAAGTAGACTTTAGGTGA-G--G---C-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3360552 GGGTCAAAGTCGACAGGAAAACTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * *
3360595 GGGTCAAAGCTGACAGGTAGACTTGAGGTAAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *** * *
3360637 AGGTCATAGCCGACAGACAAACTT-AGGGTAAAAAATTCGCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * *
3360679 GGGTCAAAGCCGACAGGTAGACTTGAGGTAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* *** * ** *
3360721 AGGTCAAAGCCGATAGGCAGACCAAAGGTAAGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3360763 GGGTCATAGTCGACAGGCAGACTTGAGATAAGGCAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3360805 GTGTCAAAGTCGACAGGTAGAC-TGAGG-GTATGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-A-GGCAGTCTCTA
* * * * * * *
3360847 AGGTCAAAACTGACAAGCAGAATTGAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3360889 AGGTCAAAGTCAATAAGCAGACTTGAGGTGA-G--G---C-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** *
3360924 GGGTCAAAGTCGATAGGCAAACTTGAAGGTAAGAAAGTCACTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* ** * * * *
3360967 GGGTCAAAGCCGACAGGTGGACTTAATGTAAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *** *
3361009 AGGTCATAGCCGGTAGGCAGACTT-AGGGTAAAAAATTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * *
3361051 GGGTCAAAGCCGAGAAGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *** *
3361093 GGGTCATAA-CTGACAAGTATG-C-TGAGGGTAATAAAGTCTCCA
1 GGGTCA-AAGCCGATAGGCA-GACTTGA-GGTGAGGCAGTCTCTA
* * * * * *
3361135 AGGTCAAAGCTGACAGGCAGACTTGAGATAAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3361177 AGGTCAAAGCTGACAAGCAGAC-TGA-GTGTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * *
3361219 GGGTCAAAGCCAACAGGTAGACTTGAGATGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *** *
3361261 GAGTCAAAGCTGACAGGCATA-TTAAGG-GTAAAAATGTCTCCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCT-CTA
* ** ** * **
3361304 -AGTCAAAGTTGATAGGCAGACTAAAGGTTCA-ATAGTCTAC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGAGGCAGTCT-CTA
* * * ** * **
3361345 CGGTAAAAGTCGACT-GGTTGAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGA-TAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * *
3361387 TGGTCAAAGCTGACAAGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3361429 GGGACAAAGCCGACAAGCAGACTTGAGATAAGGCAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * **
3361471 ATGTCAAAGCCTACAGGTAGAC-TGAGGAT-ACGAAAGTCT-TCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGA-GGCAGTCTCT-A
* * * *
3361513 AGGTCAAAACTGACAGGCAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3361555 AGGTCAAAGTCGACAGGTAGACTTGAGGTGA-G--G---C-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * *
3361590 GGGTCAAAGCCGACAGGCAAATTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * *
3361633 GGGTCAAAGCCGACAGGCGGACTTGAGAG-GAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAG-GTGAGGCAGTCTCTA
* ** * * *** * *
3361675 AGGTCAAAATCGACTA-GCAAACTT-AGGGTAAAAAATTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * **
3361717 AGGTCAAAGCTGACGGGCAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *** * *
3361759 GGATTAAAGCTGATCA-GCA-AGC-TGAGGGTAATAAAGTCACCA
1 GGGTCAAAGCCGAT-AGGCAGA-CTTGA-GGTGAGGCAGTCTCTA
* * * * * *
3361801 TGGTTAAAGCTGATAGGTAGATTTGAGATGAGGCAGTCAT-TA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTC-TCTA
* * *
3361843 GGGTTAAAGTCGACAGGCAGAC-TGAGG-GTA-GCAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGC--AGTCTCTA
* * * * ** * *
3361885 GGGTCAAAGCCAACAGGTAGACTTGAGGTTAGATAAT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * * * **
3361927 AGGTTAAAGCTGACAGGTAGAC-TAAGGGTTAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * *
3361969 GGGTCAAAGCAAACAAGCACACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *** * *
3362011 AGGTCAATGCTGATAAAG-AAACTTGAAGGTTAAAAAGTCACCA
1 GGGTCAAAGCCGAT-AGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * *
3362054 GGGTCAAAGCTGACAGTCACACTTGAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3362096 AGGTCAAAGCGGACAAGTAGACTT-AGG-GTAAGAAGGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * * * *
3362138 AGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3362180 GGGTCAAAACCG-TCATGTAGAC-TAAGGATGAGAAAGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * *
3362222 GGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * *
3362264 CGATCAAAGCTAACAGACAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * ** * * * * * *
3362306 AGGTAAAAGCTAAAAAGCAAACTTTAGATGAGGCGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3362348 AGGTCAAAGCTGACAGGCAAAC-TGAGGGTAAGAAAATCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3362390 AGGTCAAAGTCGACAGGCAGACATGAGATAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *** *
3362432 AGGTCAAAGCCGAGAGGTATAC-CGAAGGTAAAAAAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * ** * * ***
3362474 GGGTCATAGTCGACGGGCAGACTTTAGGTGAGGTAGTCGGGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * ** *
3362516 GGGTTAAAGATGACAGGTAGA-TTGAAGGTAAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* ** * **
3362558 AGGTCAAAGCTAACA-GCAGACTTGAGGTGAGGTTGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *** * *
3362599 AGGTCAAAGCTGACAAGCAGAC-TAAGGGTAATAAAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * * * *
3362641 AGGTCAAAGCTTACAGGTAGACTTGAGATGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * **
3362683 AGGTCAAAGCCGACAGGCAGA-GTGAGG-GTAGAAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AG-GCAGTCTCTA
* * * * * * *
3362725 GTGAT-AAAGCCAACAGGCAGACTTAAGGTTAGACAGTCTTTA
1 G-GGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * ** * **
3362767 GGGTCAAAGCTGATAGATACACTAAAGGTTAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3362809 TGGTCAAAGTCGATAGACAGACTTGAGGTGGGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *** * *
3362851 AGGTCAATGCCGACAAGCAAACTTGAAGTAAAAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3362893 AGGTCAAAGACGATAGTCACACTTGAGGGGAAGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * ** *
3362935 AGGTCAAAGCCGACAGTTAGA-TTTAGG-GTA-AAAGGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCT-A
* * * * ** * *
3362976 GGGTCAAAGCCGACAGGTAGACTTAAGGTCAAGTAATTTTCT-
1 GGGTCAAAGCCGATAGGCAGACTTGAGGT-GAGGCAGTCTCTA
* * * * *** *
3363018 TGGTCAAAGCC-ATCACGCAGAC-TAAGGATAAAAAAGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * * **
3363060 GGGTTAAAGCTGATAGGTC-GATTTGAGATGAGATAGTCTCTA
1 GGGTCAAAGCCGATAGG-CAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3363102 TGATCAAAGCTGATAGACAGA-TTGAGG-GTAGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * * *
3363144 AGGTCAAAGCCAAAAGGCAAACTTTAGATGAGACAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ** *
3363186 AGGTCAAAGCTGACAGGTAGAC-TAAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3363228 AGGTCAAAGTCGACAGGTAGACTTGAGGTAAGGTAGTTTC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3363269 AGGTCAAAGCCGACAAGTAGACTT-AGG-GTAAGAAGGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * * * * *
3363311 AGGTCAAAGCCAAGAGGCAGACATAAGGTGAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *** *
3363353 AGGTCAAAGCCG-TCACGTAGAC-TAAGGAT-AAAAATGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCA-GTCTCTA
* * * * * * *
3363395 GGGTCAAAGCTGACAAGCATACTTGAGATGAGGTAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * ** *
3363437 CGATCAAAGCTGACAGACAAAC-TGAGGGTAAGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * ** * * * *
3363479 AGGTAAAAGCTAAAAAGCAAACTTGAGATGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3363521 TGGTCAAAGCTGACAGGCAGAC-TAAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3363563 AGGTCAAAGTCGATAGGTAGACTTGAGGTAAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** * ** * *
3363605 AGGTCAAAGCCAACAGGCAGACTAAAGGTAAGAAAGTTTCTT
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3363647 CGGTCATAA-TCGACAAGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCA-AAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3363689 GGGTTAAAGACGACT-GGTAGA-TTGAGG-GTAGGAAAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * *
3363731 AGGTTAAAGCCGACAGGTAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *** *
3363773 GGGTCAAAGCTGACCGGTAGGC-TGAGGGTAATAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * * *
3363815 GGGCCAAAGCTGACAGGTAGACTTGAGATCAAGCAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* *
3363857 GGGTCAAAGCTGATAGGCAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * * *
3363899 GGGTCAAAGCCAATAGGCAGACATGAGGTTAGACAATTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ** *
3363941 GGGTCTAAGCTGACAGGTAGAC-TAAGCGTTAGAAAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAG-GTGAGGCAGTCTCTA
* ** * *
3363983 AGGTCAAAGTTGATAGGCAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ** *
3364025 AGGTCAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCAT-GA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTC-TCTA
* * * * * * *
3364068 GGGTCAAAGTCGACAGTCACACGTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3364110 AGGTCGAAGCCAACAAGAAGACTTTG-GGT-AAGAAGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGAC-TTGAGGTGAGGCA-GTCTCTA
* * * * * *
3364152 AGGTCAAAGTCGATAGGCAAACTTGAGGTGAAGCCGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** *
3364194 GGGTCAAAGCCGTCATA--CAGAC-TAAGGATAAGAAAGTCTCCA
1 GGGTCAAAGCCG--ATAGGCAGACTTGAGG-TGAGGCAGTCTCTA
** * ** * * *
3364236 GGGTCAAAGTTGACAGGCAGACTTGATATAAGGTAGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * * *
3364278 CGATCAAAGTTGATAGGTAGA-TTGAAGGT-AGGAAAGTCCCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGG-CAGTCTCTA
* * * * * * * * *
3364320 AGGTCTAAGCCAAAAAGTAGACTTGAGATGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *** *
3364362 AGGTCAAAGCTGATAGGTAGA-TTGAGGGTAAAAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * ** * *
3364404 AGATCAAAGCCGACAGGCAGACTTGAGGAAAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** ** ** *
3364446 AGGTTAAAGCCGACAGGCAGACTAAAGGCAAGAAAGTCTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTC-TCTA
* * * *
3364489 -GGTCATAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *
3364530 GGGTTAAAGATGACAAGCAGAC-TAAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * *
3364572 AGGTCAAAGCCGATAGACAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * *** *
3364614 GTGTTAAAGCCGACT-GGTAAACTAAAGGTAAAATAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * * ** **
3364656 AGATGAAAGCCGACACGTAAAC-TGAGGGTAAGAAAGTCTAAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
*** * * * *
3364698 GGGTCAAAGTAAATAGGCAGACTTAAAGTTAGACAGTCTAC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * **
3364740 GGGTCAAAGTCGATAGGCAGA-TTGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * *
3364782 CGGTCAAAGCTGACAAGTAGACTTGAGGTGAGGTAGTCTATA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3364824 GGGTCAAAACTGATAGGCAGGCATGAGATAAGGCAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * *
3364866 TTGTCAAAGCCGATAGGCAGA-TTAAGG-GTAGGAAAGTCTTTG
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * *
3364908 GGGTCAGAGCCGACT-GGCAGACTTGAGATGAGGCAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3364950 AGGTCAAATCCGACAGGCAAACTTGAGGTTAGGTAGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3364992 GGGTTAAAACCGATAGACAGGC-TGATGGTAAGAAAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * * *
3365034 AGGTCAAAGCCAACAAGCAGACTTAAGATGCGGCAGCCT-TGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * ** **
3365076 GGGTCAAAGTCGACCA-GCACAC-TAAGGGTAAGAAAGTCTAAA
1 GGGTCAAAGCCGA-TAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * *** * * * * *
3365118 AGGTTAAAGTAAACAGGCAGACTTAAGGTTAGACAGTCTATA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * **
3365160 GGGTCAAAGTCGACAAGTAGAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * *
3365202 CGGTCAAAGCTGACAAGTAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3365244 GAGTCAAAGCCGACAAGCAGACTTGAGATAAAGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * ***
3365286 ATGTCAAAGTCGACT-GACAGAC-TGAGG-GTACAAAAGTCT-TCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTG-A-GGCAGTCTCT-A
* * *
3365328 AGGTCAAAACTGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3365370 AGGTCAAAGTCGACAGGCAGACTTGAGGCGA-G--G---C-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * * ** *
3365405 GGGTTAAAGCCAAAAAGTAAATTTGAAGGTAAGAAAGTCACTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* *
3365448 GGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * *** * *
3365490 AGGTCAAAATCGACT-GGCAAACTT-AGGGTAAAAAATTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * *
3365532 ATGTCAAAGCTGA-CGGACAGACTTGAGGTGAGGCAGTCTGTA
1 GGGTCAAAGCCGATAGG-CAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *** * *
3365574 GGATTAAAGCTGACAGGCAGGC-TGAGGGTAATAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * * *
3365616 TGGTCAAAGCTAATAGGCAGATTTGAGATGAGGCAGT-TAATA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * *
3365658 -GGTTAAAGTCGACAGGCAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * ** *
3365699 GGGTTAAAGCCAACAGGCAGACTTGAGGTTAGATAGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * * ** *
3365741 GGGTTAAAGCTGATAAGTATA-TTGAGGGTTAGAAAGTCTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * *
3365783 GGGTCAAAGCAAACAGGCAAACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *** * *
3365825 AGGTCAATGCTGATAAAG-AAACTTGAAGGTAAAAAAGTCACCA
1 GGGTCAAAGCCGAT-AGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * *
3365868 GGGTCAAAGCCGACAGTCACACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3365910 AGGTCAAAGCTGACAGGTAGACTTAAGGT-AAGAAGGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCA-GTCTCTA
* * * * *
3365952 GGGTCAAAGCCAAGAGGCAAACTTGAGG-GAGGTAGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * ** *
3365993 GGGTCAAAACCG-TCTTGTAGAC-TAAGGATGAGAAAGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * * *
3366035 GGGTCAAAGCTGACAGGCAGACTTGAGATGAGGTAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3366077 CGTTCAAAGCTGAGAGACAGAC-TGAGG-GTAGGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
** * ** * * * *
3366119 ACGTAAAAGCTAAAAAGCAAACTTGAGATGAGGCAGTCT-TCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * * ** *
3366161 AGGTCAAAGCTGACAGGCAAAC-TCAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3366203 AGGTCAAAGTCGACAGGCAGGCATGAGGTAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *** *
3366245 AGGTCAAAGCCGAGAGGCATAC-CGAAGGTAAAAAAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * ** * ***
3366287 GGGTCATAGTCGACGGGCAGACTTGAGGTGAGGTAGTCGGGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *
3366329 GGGTTAAAGATGACAGGTAGA-TTGAAGGT-AGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGG-CAGTCTCTA
* * * * * *** *
3366371 GGGTCAAA-CGTGACAGGCAGGC-TAAGGGTAATAAAGTCTCCA
1 GGGTCAAAGC-CGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * *
3366413 GGGTCAAAGCTTACAGGCAGACTTGAGATGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3366455 AGGTCAAAGCTGACAGGAAGA-GTGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * *
3366497 GTGTCAAAGCCAACAGGCAGACTTAAGGTTAGAG-AGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAG-GCAGTCTCTA
* ** ** * **
3366539 GGGTCAAAGCTGATAGATAGACTAAAGGTTAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * *
3366581 TGGTCAAAGTCGATAAACAGACTTGAGGTGGGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * * * * *** * *
3366623 AGGTCAATGTTGACAAGCAAACTTGAAGTAATAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3366665 AGGTCAAAGCCGACAGTCACACTTCAGGGGAAGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** * * *
3366707 AGGTCAAAGTCGACAGTTAGA-TTTAGGATAAAAGGC--TTTC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-T--GAGGCAGTCTCTA
** * * * * * *
3366748 GGGTCAAAATCGACAGGCAGACTTCAGGTCAAGCAAT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * *** *
3366790 GGGTCAAAGGC-ATCACGCGGAC-TAAGGATAAAAAAGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * * **
3366832 GGGTTAAAGCTGATAGGTAGACTTGAGATGAGATAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** * *
3366874 TGATCAAAGCTGATAAACAGAC-TGAGG-GTAGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * * * *
3366916 AGGTCGAAGCCAAAAAGCAGACTTTAGATGAGACAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3366958 AGGTCAAAGCTGACAGGCAGAC-TGAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * * * * * *
3367000 AAGTTAAAGTCGACAGGTAGACTTGAGGTAAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ***
3367042 AGGTCAAAGCCGACAAGTAGACTT-AGG-GTAAAAAGGTCT-TCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCT-A
* * * * * *
3367084 GGGTCAAAGCCAAGAGGCAGACTTAAGGTGAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* *** ** * * *
3367126 AGGTCAAAGCCG-TCACATAGAC-CAAGGAT-AAGAATGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCA-GTCTCTA
* * * * * *
3367168 GGGTCAAAGCCGACAAGTAGACTTGAGATGAGGTAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3367210 CGATCAAAGCTGACAGACAGAC-TGAGG-GTAGGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * ** * * * * * *
3367252 AGGTAAAAGCTAAAAAGCAAACTTGAGATGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** *
3367294 AGGTCAAAGCTGATAGGCAGAC-TGAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * * * * * *
3367336 AAGTCAAAGTCGACACGTAGACTTGAGGTAAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** * ** * *
3367378 AGGTCAAAGTCGACAGGCAGACTAAAGGTAAGAAAGTTTCTT
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3367420 CGGTCATAA-TCGACAAGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCA-AAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3367462 GGGTTAAAGACGATAGGTAGA-TTGAGG-GTAGGAAACTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * *
3367504 AGGTTAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * * *
3367546 AGGTCAAAGCTGACAAGTAGACTTGAGATCAAGCAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * *
3367588 AGGTCAAAGCTGATAGGCAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * * * *
3367630 GGGTCAAAGCCAACAGGCAGACATGAGGTTAGACAATTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * * ** *
3367672 GGGTCAAAGCTAACAGGTAGAC-TAAGGGTTAGAAAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * *
3367714 GGGTCAAAGTTGATAGGTAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ** * *
3367756 AGGTCAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * * *
3367799 GGGTCAAAGTCGACAGTCACACGTAAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3367841 AGGTCGAAGCCAACAAGAAGACTTCG-GGT-AAGAAGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTT-GAGGTGAGGCA-GTCTCTA
* * * * *
3367883 AGGTCAAAGTCAATAGGCAGACTTGAGGTGAGGCCGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** *
3367925 GGGTCAAAGCCGTCATA--CAGA-ATAAGGATAAGAAAGTCTCCA
1 GGGTCAAAGCCG--ATAGGCAGACTTGAGG-TGAGGCAGTCTCTA
** * * * * *
3367967 GGGTCAAAGTTGACAAGCAGACTTGCGATGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * * *
3368009 CGATCAAAGTTGATAGACAGAC-TGAAGGT-AGGAAAGTCCCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGG-CAGTCTCTA
* * * * * * * * *
3368051 AGGTCTAAGCCAAAAAGTAGACTTGAGATGAGGGAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3368093 AGGTCAAAACTGACAGGCAGA-TTGAGGGTAAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3368135 AGATCAAAGCTGACAGGCAGACTTGAGGTAAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** ** ** *
3368177 AGGTTAAAGCCGACAGGCAGACTAAAGGCAAGAAAGTCTCTT
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3368219 GGGTCATAGCCGACAGGCAGACTTGAAGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * *
3368261 GGGTTAAAGATGACAAGCAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * *
3368303 AGGTCAAAGCCGATAGACAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *** *
3368345 GTGTCAAAGCCGACAGTCAAAC-TGAAGGTAAAAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * * * ** **
3368387 AGATGAAAGCCGACAAGCAAAC-TAAGGGTAAGAAAGTCTAAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
*** ** * * * *
3368429 GGGTCAAAGTAAACGGGCAGACTTAAAGTTAGACAGTCTAC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * ** * **
3368471 AGGCCAAAGTCGACAGGCAGACTCAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3368513 TGGTCAAAGCTGACATGCAGACTTGAGGTGAGGCAGTCTATA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3368555 GGGTCAAAACAGATAGGCAGACTTGAGATAAGGCAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * ** *
3368597 TTGTCAAAGCCGATAGGCAGAC-TAAGGGTCG-GAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGT-GAGGCAGTCTCTA
* * * * *
3368639 GGGTCAGAGCCGACTA-GCAGACATGAGATGACGCAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3368681 TGGTCAAATCCGACAGGCAAACTTGAGGTTAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * *** * *
3368723 GGGTGAAAGCCGATAGGCAGGA--TGATGGTAATAAAATCTCCA
1 GGGTCAAAGCCGATAGGCA-GACTTGA-GGTGAGGCAGTCTCTA
* * * * * * * *
3368765 GGGTCAAAGCCAACAAGCAGACTTAAGATGCGGTAGCCT-TGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * ** **
3368807 GGGTCAAAGTCAACCA-GCACACTATG-GGTAAGAAAGTCTAAA
1 GGGTCAAAGCCGA-TAGGCAGACT-TGAGGTGAGGCAGTCTCTA
* *** * * * * * *
3368849 GGGTTAAAGTAAACAGGTAGACTTAAGGTTAGACAATCTAC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
** * * * **
3368891 GGGTCAAAGTTGACAGGTAGAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * *
3368933 TGGTCAAAGCTGACAAGCAGACTTGAAGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3368975 GGGTCTAAGCCGATAGGCAGACTTGAGATAAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * ***
3369017 ATGTCAAAGTCGACT-GGCAGAC-TGAGAGT-ACAAAAGTCT-TAA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAG-GTGA-GGCAGTCTCT-A
* * * *
3369059 AGGTCAAAACTGATAAGCAGACTTGAGGTGAGGCTA-TCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGC-AGTCTCTA
* * * * *
3369101 AGGTCAAAGTCAACAGGCAAACTTGAGGTGA-G--G----TA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * ** * *
3369136 GGGTTAAAGCCGAAAAGCAAATTTCAAGGTAAGAAAGTCCCCA
1 GGGTCAAAGCCGATAGGCAGACTT-GAGGTGAGGCAGTCTCTA
* * * * *
3369179 AGGTCAAAGCCGACAGGCAAACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *** * *
3369221 AGGTCAAAATCAATAGGCACACTT-AGGGTAAAAAATTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * *
3369263 AGGTCAAAGCCGACGGGCAGACTTGAGGTGAAGCAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *** *
3369305 AGATTAAAGCTGACAGGCAGGC-TGAGGGTAATAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *** *
3369347 TGGTTAAAACTGACAGGCAGATTTGAGAAAAGGTAGTCAT-TA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTC-TCTA
* ** * * * *
3369389 GGGTTAAAGTTGACAGACAGAC-TAAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * *
3369431 GGGTCAAAGCCAACAGGCAGACTTGAGGTTAGACAGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * ** * * * **
3369473 GGGTTAACGTTGACAGGTAGA-TTGAGGGTTAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * *
3369515 GGGTCAAAGCCAGCA-A-GTAAACTTGAGGTGAGGTAGTCT-TC
1 GGGTCAAAGCC-G-ATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * *
3369556 GAGGTCAATGCCGACAAGG-AAACTTGAAGGTAAGAAAGTCACCA
1 G-GGTCAAAGCCGA-TAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * *
3369600 AGGTCAAAGCCGATAGTCACAGTTAAGGTGAGGCAGTAT-TCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * * * *
3369642 AGGTCAAAGCCAACAAGTAGACTT-AGG-GTAAGAAGGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * * * *
3369684 AGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGGTAGTTTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** *
3369726 GGGTCAAAGCCG-TCACGTAGAC-TAAGGATGAGAAAGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * * * *
3369768 GGGTCAAAGTCGACAAGTAGACTTGAGATGAGGTAGTC-CTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTC-TA
* * ** * * * *
3369810 TGATCAAAGTTGAAAGACAAAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * * * *
3369852 AGGT-AAAACCTAAAAAGCAAACTTGAGATGAGGCAGTCTCCA
1 GGGTCAAAGCC-GATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3369894 AGGTCAAAGCTGATAGGCAGAC-TAAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3369936 AGGTCAAAGTCGATAGGTAGACTTGAGGTAAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * *
3369978 AGGTCAAAGGCGACAAGTGGACTT-AGG-GTAAGAAGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * * *
3370020 GGGTCAAAGGCAAGAGGCAGACTTGAGGTGAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3370062 AGGTCAAAGCCG-TCACGTAGAC-TAAGGAT-AAGAATGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCA-GTCTCTA
* * * * * ** *
3370104 GGGTCAAAGCTGACAGGTAGAC-TAAGGGTTAGAAAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * *
3370146 GGGTCAATGTTGATAGGCAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3370188 AGGT-AAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAA-GCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * *
3370231 AGGTCAAAGTCGATAGTCACACGTGAGGTGAGGTAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3370273 AGGTCGAAGCCAACAAGAAGACTTCG-GGT-AAGAAGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTT-GAGGTGAGGCA-GTCTCTA
* * * * *
3370315 AGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCCGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** *
3370357 GGGTCAAAGCCGTCATA--CAGAC-TAAGGATAAGAAAGTCTCCA
1 GGGTCAAAGCCG--ATAGGCAGACTTGAGG-TGAGGCAGTCTCTA
** * ** *
3370399 GGGTCAAAGTTGACAGGCAGACTTGATATGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * * * *
3370441 CGATCAAAGTTGATAGACAAAC-TGAAGGT-AGGAAAGTCCCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGG-CAGTCTCTA
* * * * * * * * **
3370483 AGGTCTAAGCCAAAAAGTAGACTTAAGAT-ACGGCAACCT-TGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGA-GGCAGTCTCT-A
* * * * * ** **
3370525 GGGTCAAAGTCGACCA-GCACACTAG-GGTAAGAAAGTCTAAA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * **
3370566 GGGTTAAAGTCAACAGGCAGACTTAAGGTTAGATAGTCTAC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * ** *
3370608 GGGTCAAAGTCGACAGGTAGAC-TGAAGGTAAGAAAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * * *
3370650 TGGTCAAAGCTGACAAGCAGGCTTAAAGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3370692 GGGTCAAAGCCGACAAGCAAACTTGAGATAAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * ***
3370734 ATGTCAAAGCCAACT-GGCAGAC-TGAGG-GTACAAAAGTCT-TCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTG-A-GGCAGTCTCT-A
** * *
3370776 ACGTCAAAACTGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* *
3370818 AGGTCAAAGTCGATAGGCAGACTTGAGGTGA-G--G---C-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * *
3370853 GGGTCAAAGCCGAAAGGCAAATTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * *
3370896 AGGTCATAGCCGATAGGCAAACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* *** * * *** * *
3370938 AGGTCAAAATTGATAGGTAGACTT-AGGGTAAAAAATTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * *
3370980 AGGTCAAAGCCGACGGGCAGACTTGAGGTGAGGCAGTATTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *** *
3371022 GGATTAAAGCTGACAGGCA-AGC-TGAGGGTAATAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGA-CTTGA-GGTGAGGCAGTCTCTA
* ** * * * **
3371064 GGGTCAAAACTAACAGGCAAATTTGAGAAGAGGCAGTCAT-TA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTC-TCTA
* *** ** * *
3371106 GGGTTAAAATTGGCAAGCAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * *
3371148 GGGTCAAAGCCAACAGGTAGACTTGAGGTTAGACAGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * * * **
3371190 GGGTTAAAGCTGACAGGTAGAC-TAAGGGTTAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * * *
3371232 GGGTCAAAGCTAACAAGCAAACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3371274 AGGTCAATGCCGACAAGG-AAACTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGA-TAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * *
3371317 GAGTCAAAGCTGACAGTCACACTTGAGGTGAGGTAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * * * *
3371359 AGATCGAAGCCAACAAGTAGACTT-AGG-GTAAGAAGGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * ** *
3371401 GGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGATAGTTTTCT-
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAG-TCTCTA
* * * * * ** *
3371443 GTGTTAGAGCC-ATCACGCAGAC-TAAGGATGAGAAAGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * * * *
3371485 GGGTCAAAGTCGACAGGCAGACTTGCGATGAGGTAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3371527 CGATCAAAGCTGAAAGATAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * ** * * * * * *
3371569 TGGTAAAAGCTAAAAAGCAAACTTGAGATGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3371611 AGGTTAAAGCTGACAGGCAGAC-TGAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * *
3371653 AGGTCAAAGCCGACAAGCAGACTTGAGGTAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ***
3371695 AGGTTAAAGCC-ATTAGGCAGAC-CGAAGGTAAAAAAGTCTCTA
1 GGGTCAAAGCCGA-TAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * ** * *
3371737 GGGTCATAGTCAACGGGCAGACTTGAGGTGAGGTAGTTTGC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * ** * * * * ** * *
3371779 AGGTTAAAGATGACAAGTAGA-TTGAAGGTAAGAAAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * *
3371821 GGGTTAAAGCTGACAGGCAGACTTTAGGTGACGCTGGCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ***
3371863 AGGTCAAAGCTGACAGGTAAAC-TGAGGGTAATAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * * * *
3371905 GGGTCAAAGCTTACAAAG-AGACTTGAGATGATGTAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * ** *
3371947 AGGTCAAAGCCGACGGGCAGA-GTGAGGGTTG-GAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GG-TGAGGCAGTCTCTA
* * * * * * * *
3371989 GTGTCAAAGCCAACAGGCAAACTGGAGGTTAGACAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** ** * ** * **
3372031 GGGTCAAATCTTATAGATAGAATAAAGGTTAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3372073 TGGTCAAAGCCGATAGGCAGACTTGAGGTGGGGTAGCCTCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * * * ** * *
3372116 -GGTCAATGCTGACAAGCAAACTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * *
3372158 AGGTCAAAGCTGATAGTCACACTTGAGGGGAAGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * ** * ** * *
3372200 ATGTCAAATCTGATAGTTAGA-TTTAGG-GTA-AAAGGTTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * * * * * *
3372241 GGGTCAAAACTGACAGGCCGACTTGAGGTCAAGCAATTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * ** * * *** * *
3372283 AAGTCAAAGCTG-TCACACAGAC-TAAGGATAATAAAATCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * **
3372325 GGGTCAAAGCCAATAGGTAGACTTGAGATGAGATAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3372367 CGATCAAAGCTGATAGACAGAC-TGAGGGTAAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * * *
3372409 AGGTCAAAGCCAAAATGCAGACTTCAGATGAGGCAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * ** *
3372451 AGGTCAAAGCTAACAGGCAGAC-TGAGGGTAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * * * *
3372493 AGGTCAAAGTCGACAGGTAGAGTTGAGGTAAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** * * *
3372535 AGGTCAAAGGCGACAAGTGGACTT-AGG-GTAAGAAGGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * *
3372577 GGGTCAAAGCC-AGGAGGCAGACTTGAGGTGAGGTAGTTTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3372619 AGGTTAAAGCCG-TCATGTAGAC-TAAGGAT-AAGAATGTCTCAA
1 GGGTCAAAGCCGAT-AGGCAGACTTGAGG-TGAGGCA-GTCTCTA
** * * * * * *** *
3372661 TTGTCAAAGCTGACAGGTAGAC-TAAGGGTTAAAAAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * * *
3372703 GGGTCAATGTTGATAGGTAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** **
3372745 AGGTCAATGCCGACAAGCAAACTTGAAGGCAAGAAAGTCATC-A
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTC-TCTA
** * * * * * *
3372788 GGGTCAAAATCGATAGTCACACGTGAGGTGAGGTACTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3372830 AGGTCGAAGCCAACAAGAAGACTT-AGG-GTAAGAAGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * * * *
3372872 AGGTCAAAGTCGATGGGTAGACTTGAGGTGAGGCCGTTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** *
3372914 GGGTCAAAGCCGTCATA--CAGAC-TAAGGATAAGAAAGTCTCCA
1 GGGTCAAAGCCG--ATAGGCAGACTTGAGG-TGAGGCAGTCTCTA
* ** * * ** *
3372956 AGGTCAAAGTTGACAGGCGGACTTGATATGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * * * * *
3372998 AGATCAAAGTTGATAGACAAAC-TGATGGT-AGGAAATTCCCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGG-CAGTCTCTA
* * * * * * * * *
3373040 AGGTCTAAGCCAAAAAGTAGACTTAAGATGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * **
3373082 AGGTCAAAGCTGACAGGCAGAC-TGAGGGTAAGAAAGTCT-TAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCT-A
* * * * * * * * *
3373124 AGGTCAAAGTCAACAGGTAGACTTGAGGTAAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ** * *
3373166 AGGTCAAAGCCGACAAGCAAACTAT-TGGTAAGAAAGTTTCTT
1 GGGTCAAAGCCGATAGGCAGACT-TGAGGTGAGGCAGTCTCTA
* ** * * * *
3373208 CGGTCATGGTCGACAAGCAGATTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3373250 GGGTTAAAGACGACAGGTAGA-TTAAGG-GTAGGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
** *
3373292 AAGTCAAAGCCGATAGGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *** *
3373334 GGGTCAAAGCTGACAGGTAGGC-TGAGGGTAATAAATTCTGC-A
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCT-CTA
* * * * * * * *
3373376 AGGTCAAAGCTGACAGGTAGACTTGAGATCAAGCAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * *
3373418 GGGTCAAAGCTGATAGGTAGAC-TGAGG-GTAGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * * * *
3373460 GGATCAAAGCCAACAGGCAGACATGAGGTTAGACAATCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *** * * ** *
3373502 GGGTCAAAACTGACAGGTTTAC-TAAGGGTTAGAAAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * *
3373544 GGGTCAAAGTTGACATGCAGACTTGAGGTGAGGCAGCCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ** * *
3373586 AGGTCAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * ** *
3373629 GGGTCAAAGTCGACAGTCACG-CGTGAGGTGAGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCA-GACTTGAGGTGAGGCAGTCTCTA
** * * * * * * * *
3373671 AAGTCGAAGCCAACAAGTAAACTT-AGG-GTAAGAAGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * *
3373713 GGGTCAAAGTCGATAGGCAGACTTGAGGTAAGGCCGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * ** * * **
3373755 ACGTCAAATCCGGCATA--TAAACTAAAGATAAGAAAGTCTCTA
1 GGGTCAAAGCC-G-ATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *
3373797 AGGTCAAAGTTGACAGACAGACTTGAGATGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * * *
3373839 CGATCAAAGTTGATAGACAGAC-TGAAGGT-AGGAAAGTCCCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGG-CAGTCTCTA
* * * * * * * * *
3373881 AGGTCTAAGCCAAAAAGTAGACTTGAGATGATGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3373923 AGATCAAAGCCGACAAGCAGACTTGAGGTAAGGTAGTCACTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3373965 AGGTCAAAGCCAACAGGTAGACTTGAGGTAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * ** ** ** *
3374007 AGGTCAAAGTTGACAGGCGGACTAAAGGCAAGAAAGTCTCTT
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3374049 GGGTCATAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * ** *
3374091 GGGTTAAAGATGAGAAGCAGACTT-AGG-GTAGAAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AG-GCAGTCTCTA
* * * *
3374133 AGGTTAAAGCCGATAGACAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * * ***
3374175 GTGTGAAAGACGACAGGCAAACTAAAAG-AAAAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * ** **
3374216 GGATGAAAGTCGACAAGCAAAC-TGAGGGTAAGAAAGTCTAAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
*** * * * * *
3374258 GGGTCAAAGTAAACAGGCAGACTTAAGGTTAGACTGTCTAC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * **
3374300 GGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * *
3374342 CGGTCAAAACTGACAAGCAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3374384 AGGTCAAAACTGATAGGCAGACTTGAGATGAGGTAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * * * * *
3374426 ATGTCAAAGTCGACAGGTAGAC-TAAGG-GTAGGAAAGTCTTTG
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * *
3374468 GGGTCAGAGCCGACT-GGCAGACTTGAGATGAGGCAATCTCAA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3374510 TGGTCAAATCCGACAGGCAAACTTGAGGTTAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *** * *
3374552 GAGTTAAAGCTGACAAGCAGGC-TGATGGTAACAAAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* ** * * * * * *
3374594 GGGTCAGAGCAAACAAGCAGACTTAAGATGCGGCAGCCT-TGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* * * * ** * *
3374636 GGGTCAAAGTCGACCA-GCACAC-TGAAGGTAAGAAAGTTTCAA
1 GGGTCAAAGCCGA-TAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * ** * * **
3374678 AGGTCAAAGCCGACAGATAAACTTGACGTGAGGTGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * ** *
3374720 AGGTCAAAGCCGACAGGCAGACTAAAGGTAAGAAAGCCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** ** *
3374762 GGGTTAAAGCCGATAAGCAAACTTGAGGTTCGATAGTCT-TCG
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
* ** ** * *
3374804 GGGTTAAAGTTGATAGGCAGAC-TGATGGT-AGAAAACTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAG-GCAGTCTCTA
* * ** * * * * *
3374846 AGGTCAAAGCTGACCGACAGACTTGAGGTTAGGTAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** ** * *** *
3374888 AGGTTAAAGCC-A-AGGCAAACTAAACTTAAAAAAGTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3374928 GGGTCAAAGCTGACT-GGCAGGCTTAAAGTGAGGTAGTTTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * **
3374970 GGGTCAAAGCCGACAGGTAGACTTGAGACGAGGCAGTCTCTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTC-TA
* * * * *
3375013 -TGTCAAAGCCGACAAGCAGAC-TGAGG-GTAGGAAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCAGTCTCTA
* * ** * * * *
3375053 AGGTTAAAATCGACAGGCAAACTTGAGATGAGGCAGTCTAC-G
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
** *
3375095 GGGTCAAATTCGATAGGCAGACTTGAGGTTG-GGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * ** *
3375137 GGGTCAAAGCTAGA-AGGCAGAC-TAATGGTAAGAAAATCTCTA
1 GGGTCAAAGC-CGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * *
3375179 GGGTCAAAGCCAACAAGTAGACTTGAGATGAGGTAGTCTCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * ** * *** *
3375222 -GGTCAATGCAGACAAGCAGACTCAAGGTAATAAAGT-TACCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * * * * *
3375263 AGGACAAAGCCGACAAGCAAACTAGA-G-GAGACAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * ** * *** *
3375303 AGGTCAAAGTTGACAAGCAGACTAAAGGTAAAAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * **
3375345 GGGTCAAAGTCGATAGGCA-AATTGAGGGTTAGAAAGTCT-TCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCT-A
** * * * *
3375387 AAGTCAGTA-CCGACAGGCAGACTTGAGATGAGGCAATCTAC-A
1 GGGTCA-AAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * ** ** *
3375429 TGGTCAAAGCCGATAAGCAAAC-TGAGGGTAAGAAAACCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3375471 GGTTTAAGGCCAACAGGCAGACTTGAGGTTAGACAGTCT-TCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-A
** * * * * * *** *
3375513 GGGTCAAAGCTAACAGGTAGACTAGGGGTAAAAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *
3375555 GGGTCAAAGCCGACAGACAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * *
3375597 AGGTCAATGCCAATAGGCAGACTTGAATGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * *
3375640 TGGCCAAA-CCTGACAGTCACACTTGAGGTGAGGCATTCTCAA
1 GGGTCAAAGCC-GATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3375682 AGGTTAAAGCTGATAGGTAGACTT-AGG-GTAAGAAGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCTCTA
* * * * *
3375724 GGATCAAAGCCGATAGGTAGACTTGAGGTGAGGCAATTTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * *** *
3375766 GGGTCAAAGCCGACAGAG-AGAC-TGAGGGTAAAAAAGTCTCGA
1 GGGTCAAAGCCGATAG-GCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * *
3375808 GGGTCAAAGCCGACT-GGCAGGCTTAAGATAAGGTAGTCTTTA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * **
3375850 GCATCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTCCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCT-CTA
* * * * *
3375893 -GGTCAAAGCCAGA-AAGCAGGCTTGAGATAAGGCAGTCTCCA
1 GGGTCAAAGCC-GATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * **
3375934 AGGTCAAAGTTGACAGGCAAAC-TGAGGGTAAGAAAGTCT-TGA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCT-A
* * * *
3375976 AGGTCAAAGCCGACAGGCAGACTTGAGGTAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * **
3376018 GGGTCAAAGCCGACAAAG-AGAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGA-TAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * *
3376060 GGGTCATAGCCGACAGGTAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * *
3376102 GGGTTAAAGATGATAGGTAGAC-TGAGG-GTAGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* *
3376144 GGGTCAAAGCCGATAAGTAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** *** ** *
3376186 GTGTCAAAGCCGATAGGCAGACTAAAGAAAAGAAAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * *
3376228 GGGTCAAAGTAGATAGGCAGACTTGAGGTTAGACAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * **
3376270 AGGTCCAAGTCGATAGGCAGAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * *
3376312 CGGTCAAAGCCGACAAGCAGACTTGAGGTGAAGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3376354 GGGTCAAA-CTGATGGGCAGACTTGAGATAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * *
3376395 GTCTCAAAGCCGATAGGCAGAC-TAAGG-GTAGGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
** * * * *
3376437 GGGTCAAAGCCGGCAGGCAAACTTGAGATCAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *** * *
3376479 AGGTCAAAGCTGACAGCCAGAC-TGAGG-GCAAAAAAGTTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG--AGGCAGTCTCTA
* * * * *
3376521 AGGTTAAAGCCGACAGGCAGACTTGAGGTAAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3376563 GGGTCAAAGTCGACAGACAGACTTGAGGGGTGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3376605 GTGACAAAGCTGACAAGCAGA-TTGAAGGT-AGGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGG-CAGTCTCTA
* * *
3376647 TGGTCAAAACCGATAGGCAGACTT-AGGATGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGAGGCAGTCTCTA
* * * * * **
3376689 GGGTCAAATCTGGTTGGCAGACTTGAGGTTAGGTGGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * *
3376731 AGGTCAAAGCCGATAGGCAGA-TTGATGGTAAGAAAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * *
3376773 GGCTCAAAACC-AGTAGGCAGACTTGAGATGAGGAAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3376815 GGGTCAAAGCCAACAAGCAGAC-TGAGGGTAAGAAAGT-TTTCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCT-A
* ** * *
3376857 AGGTCAAAGTTGATAGGCAAACTTGAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** * ** *
3376899 AGGTCAAAGTCGATAGGTAGACTAAAGGTAAGATAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** *
3376941 AGGTCAAAGCCGACAGGCAGACTTGAGGTTTGGTCA-TCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGG-CAGTCTCTA
* * * * *** * *
3376983 AGGTTAAAGCCGATAGGCAGAC-TAAGGGTAAAAAACTTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3377025 GGGTCAAAGCTGACAGGCAGACTTGAGGTTAAGTAGTCGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** *
3377067 GGCTCAAAGCCG--AGGCAAACTAAAGGTGA-GAACGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCA-GTCTCTA
* * * ** * *
3377107 GGGTCAAAGCCTATAGGCAGACCTAAGACGAGACAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * *
3377149 GTGTCAAAGTCGACAAGCAGAC-TGAGG-GTAGGAAATCTATA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCAGTCTCTA
** * ** * * * *
3377190 ACGTTAAAAACGACAAGCAAACTTGAGATGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
**** * ** *
3377232 GGGTCCAATTTGGCT-GGCAGACTTGAGGTTTGGTAGTCTCTA
1 GGGT-CAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** *
3377274 GGGTCAAAGCTGACAGGTAGAC-TAATGGTAAGAAAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * *
3377316 GGGTCAAAGCCAATAGGAAGACTTGAGATGAGGTAGTCTCTT
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *** * *
3377358 GGGTTAAAGCCGACAAGCAGAC-TGAGGGTAAAAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * ** *** *
3377400 GGGTCAAAGCTGACAAGG-AAACTTAAGACGATATAGTCTCCA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * **
3377442 GGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* *
3377484 GGGGCAAAGCCGATAGGCAGACTTGAGTTGA-G--G----TA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * ** *
3377519 AGGTTAAAACCGATAGGTAAACTTGAGGGTTAGAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
** * * * *
3377562 GGGTCAAATTCGGTAAGTAGACTTGAGGTGAGGTAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * ** * *
3377604 GGGTCAAAGTTGATAGGCAGA-TTGAGTGTAAGAAATTCT-TC
1 GGGTCAAAGCCGATAGGCAGACTTGAG-GTGAGGCAGTCTCTA
* * * * * *
3377645 GGTGTCAAAGCAGACAAGTAGACTTGAGATGAGGCAGTCTCCA
1 GG-GTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * ** * * *
3377688 AGGTCAAAGCCAACAGGCTGA-TTGAAGGTAAGAAAATTTCCA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* ** * * * * *
3377730 AGGTCAAAGCTAATAGGTAGACTTAAGATGAGACAGTCTCCAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
* * * * * *
3377773 GGTTC-AAGCCAATAGGCAGACTTGATGCTTTA--TAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-G-GTGAGGCAGTCTCTA
* ** * * ** * *
3377814 AGGTCAAAGCTAATAGGTAGACTT-AGCGTAAGAAAGCCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTGAG-GTGAGGCAGTCTCTA
* * ** * ** * ** * *
3377856 GGGTCAAAGCTGACAAACAAACTAAAGGTAAGAAAGTATATA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * * * *
3377898 AGGTCAAAGCCGACAGACAAACATCAGGTGAGGTAGTCTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * * *
3377940 GGGTCAAAGTCGACAGGTAGACTTGAGAT-ATGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGA-GGCAGTCTCTA
* * ** *
3377982 GTGTCAAAGTCGATAGGCAGAC-TGAGG-GTATGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-A-GGCAGTCTCTA
* * * * * *
3378024 GGGTTAAAACGGATAAGCAGACTTGAGGTGAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** *
3378066 TGGTCAAAGTTGACAGGCAGACTTGAGGTGA-G--G---C-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3378101 GGGTCAAAGTCGACAGGCAAACTTGAAGGTAAGAAAGTCACTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * *
3378144 GGGTCAAAGCCGA-GGGTAGACTTGAGGTAAGACAATCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3378185 AGGTCAACGCCAAAAGGCAGAC-TGAGG-GCAAGAAAATCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG--AGGCAGTCTCTA
* * * * * * *
3378227 GTGTCAAAGTCGACAGGAAGA-TTAAGGAT-AGGATAGTCT-TCG
1 GGGTCAAAGCCGATAGGCAGACTTGAGG-TGAGG-CAGTCTCT-A
* * *
3378269 GGGTCAAAACCGACTA-GCAGACTTGAGATGTGGCAGTCTCTA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * ** * *
3378311 GGGTCAAAGCTGATAGGCAGA-TTGAAGGTAAGAAAATTTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * *
3378353 GGGTCATAGCCGA-CGGTC-GTACTTGAGGTGAGGTAGTCACCA
1 GGGTCAAAGCCGATAGG-CAG-ACTTGAGGTGAGGCAGTCTCTA
* * * * * ***
3378395 AGGTCAAAGACGATAGACAAAC-TGAGGGTAACAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
*
3378437 GGGTCAAACCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * ** * *
3378479 ATGTTAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCACCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * * *
3378521 GGGTCAAAGCCGACAAGCACACTTAAGGTAAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * ** *
3378563 AGGTCAACGCCGATAGGCAAACTT-AGGGTAAGAAAGTCTGC-C
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCT-CTA
** * ** * *
3378605 GGGT-TGAG--GTTAAACAGACTTGAGGAGAGGCCGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * *** * *
3378644 GGGTCTAAGCCGACCGGTAAAC-TGACGGTAAAAAAGTTTCAA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * * * **
3378686 GGGTCAAAGCCAACATGCAGACTTAAGATGAGGTTGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
*** * * *** *
3378728 CAATCAAAGCCGATAAGCAGAC-TGAAGGTAAAAAAGTCTTTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
* * * * * * * *
3378770 GGATCATAGTCGACAGGTAGACTTGAGGTGACGTAGT-TGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCT-CTA
** * *
3378812 GGGTCAAAGATGACT-GGCAGAC-TGAGG-GTAGGAAAGTTTCTA
1 GGGTCAAAGCCGA-TAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * ** * *
3378854 GGGTCAAAGCCGACAGGCAGGCATGGGGTGAGGCAACCACCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
** * * * *
3378896 ATGTCAAAGCTGATAGGCAGA-TTGAGG-GTAGGAAAGTCGCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * * * * *
3378938 GGGTCAAAACCAATAAGCACACTTAAGGTGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3378980 AGGTCAAAGTCGATAGGCAAACTT-AGG-GTAAGAAGGTCTGC-A
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGGCA-GTCT-CTA
* * * * * *
3379022 AGGTTAAAGCCGATAGGCAGGCTTAAGGAGAGGCAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * *** * *
3379064 AGGTCAAAGCTGATAGGCAGAC-TGAGGGTAAAAAAATCTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGGCAGTCTCTA
* * * *
3379106 GGGTTAAAGTCGACAGGCAGACTTGAGATGA-GCTTA-TCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGC--AGTCTCTA
*** * * *
3379148 CAATCAAAGCCGACAGGCAGAC-TGAGGGTG-GGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGA-GGTGAGG-CAGTCTCTA
* * * * * * *
3379190 AGGTCAAAGCCAACAAGCAGACTTGAGATGAGGTAGTCTCTC
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * ** *
3379232 GAGTCAAA-CTTGATAGGCTA-A----AGGTAAGAAAGTCTCCA
1 GGGTCAAAGC-CGATAGGC-AGACTTGAGGTGAGGCAGTCTCTA
* * * * *
3379270 AGGTCAAAGCCGATAGACAGACTTGAGGTAAGGTAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * * * **
3379312 AGGTCAAAGCCGATAGGCACAC-TGAATGTAAGAAAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTG-AGGTGAGGCAGTCTCTA
** * * * *
3379354 GGGTCATTGTCGATAGGCAGACTTGAGGTGAAGTAGTCTCGA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* ** * * * * *
3379396 GGGTTAAAGATGACAAGCAGAC-TAAGG-GTAGGAAAGTCTCCA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTG-AGG-CAGTCTCTA
* * *
3379438 AGGTCAAAGTCGATAGGCAGACTAGAGGTGAGGCAGTCTCTA
1 GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
* * *
3379480 GAGTCAAAGCTGACAGGCA
1 GGGTCAAAGCCGATAGGCA
3379499 AACTAAGGGT
Statistics
Matches: 16588, Mismatches: 5595, Indels: 2207
0.68 0.23 0.09
Matches are distributed among these distances:
34 3 0.00
35 226 0.01
36 50 0.00
37 5 0.00
38 30 0.00
39 66 0.00
40 221 0.01
41 1365 0.08
42 13049 0.79
43 1464 0.09
44 79 0.00
45 4 0.00
46 7 0.00
47 19 0.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (42 bp):
GGGTCAAAGCCGATAGGCAGACTTGAGGTGAGGCAGTCTCTA
Found at i:3356402 original size:84 final size:84
Alignment explanation
Indices: 3356134--3380298 Score: 2756
Period size: 84 Copynumber: 288.7 Consensus size: 84
3356124 CTCCAGTGTT
* * * * * *
3356134 AAAGTCGACAGGCAGATTGAGGGTAAGAAAGTCT-TCGGGGTCAAAGCCGACTGG-GGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
* * * * *
3356197 ATGTGGCAATCTCTAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * *
3356217 AAAGCCGATAGGCAGACTAAAGGTAAGAAAGTTTCTAGGGTC--AGCCGACAGGCATACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3356280 TGAGGCAGTCGCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * ** * * * *
3356299 AAAGACGATAAACAAACTAAGGGTAACAAAGTCTCTGGGGTCAAAGCCGATAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3356364 TGAGGCAGTCTCCAATGTC
66 TGAGGCAGTCTCCAAGGTC
** * * * * * **
3356383 AAAGCCGACAGGCAGACTAAGGGTTGGAAAGTCACTAGGGTTAAAGCCAACAGGAACACTCAAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3356448 TAAGGTAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * ** ** *
3356467 AAAGCCGATC-GGCAAACTTAGGGTAA-AAAGGTCTAC-CGGGT-TTAG--GTTAAGCAGACTTG
1 AAAGCCGA-CAGGCAGACTAAGGGTAAGAAA-GTCT-CTAGGGTCAAAGCCGACAGGCAGACTTG
* * *
3356526 AGGAGAGGCAGTCTCTAGGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * * * * ** *
3356548 AAAGCCAATAGGTAGACTGAGGGTAAAAAAGTCT-TAAGGGTCAAAGTCGACATGTGGACTTAAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
* **
3356612 ATGAGGTTGTCTCTACAA--TC
65 GTGAGGCAGTCTC--CAAGGTC
* * * * * * *
3356632 AAAGCCGACAGGCAGATTGAGGGTAAGAAAGTCTCGAGGGTTAAAGCCAACAAGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3356697 TGAGGTTA-TCTCTACAA--TC
66 TGAGG-CAGTCTC--CAAGGTC
* ** * * * * * * ** * *
3356716 AAAGCTGACAGATAGATTGAGGGTAGGAAAGCCTCCAAGGTCAAAGCTAACAAGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
**
3356781 TGAGGCAGTCTCCCGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * *
3356800 AAAGCCGGCAGGCATACTAACGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3356865 TAAGGTAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* ** * * *
3356884 AAAGCCGACAGGCACACTGAA-GGTAAGAAAGTCTCTAGGGTCATTGTCGGCAGGCAGACTTAAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3356948 GTGAGGTAGTCT-CGAGGATC
65 GTGAGGCAGTCTCCAAGG-TC
** * * * * * * * *
3356968 AAAGATGATAGGTAGACGGAA-GGTAGGAAAGTCTTTAGGGTCAAAGTCGATAGGCAAACTTGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
***
3357032 GTGAGGCAGT-TTGTAGTGTC
65 GTGAGGCAGTCTCCAAG-GTC
* * * * * *
3357052 AAAGCCGACAGGCAGACTGAGGGCAAGAAAGTCT-TAAGGGTCAAAGTCGACAAGCAGACATAAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3357116 GTTAGAG-AGTCTCTAGGGTC
65 GTGAG-GCAGTCTCCAAGGTC
* * * * * * ** * * * * * * * *
3357136 AAAGTCCG-CATGTATCAATACATTGACGTGAGGTATTCGCCAAGGTCAAAGACGATAGACAAAC
1 AAAG-CCGACAGGCA-GACTA-A--G-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGAC
* *** *
3357200 -TGAGGGTAACAAAGTCTCTAAGGTC
60 TTGA-GGTGAGGCAGTCTCCAAGGTC
* * * * * ** * * ** *
3357225 AAAGTCGATAAGCAGACT-TGAGGTGAGGTAGCCTCGAGGGTCAAAGATGACAGGTAGA-TTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3357288 G-GTAGGAAAGTCTCTAGGGTC
65 GTG-AGG-CAGTCTCCAAGGTC
* * * * ** * * ** *
3357309 AAAGTCGATAGGCAGACT-TGAGGTGAGGCAGTCTCTAGTGTCAAAGCTGGTAGGCAAAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** * *
3357372 GGTAAGAAAGTTTTCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * *
3357393 AAAGCCGACAGGCAGACTGAGGGCAAGAAAGTCT-TAAGGGTCAAAGTCGACAGGCAAACATGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
***
3357457 GTTG-GAG-AGTCTCTTGGGTC
65 G-TGAG-GCAGTCTCCAAGGTC
* * * * * * *
3357477 AAAGTCGACAGGCAGACTTAA-GGTAAAAAAGTCTTTAGGGTCAAAGCCAATAAGAAGACTTGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** *
3357541 GTGAGG-TGTTCTTTAGGGTC
65 GTGAGGCAG-TCTCCAAGGTC
* * * * * ** * ** *
3357561 AAAACTGATAGGCAGACTTAA-GATGAGGTAGTCTCTAGTGTCAAAATCGACAGG-AGAC-TAAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
** ** *
3357623 G-GTAGAAAAGTCTTTAGGGTC
65 GTG-AG-GCAGTCTCCAAGGTC
* * * * ** * * *
3357644 AAAGCCAATTA-GCAGACTTGAGATGT--GGCAGTCTCCAAGGTCAAAGCCAACAGGCAGAC-TG
1 AAAGCCGA-CAGGCAGAC-TAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG
* ** * *
3357705 AAGGTAAGAAAGTTTCCAATGTC
63 -AGGTGAGGCAGTCTCCAAGGTC
* ** ** * * * * *
3357728 ATAGCCGACAGATAGACTTAA-GGTAAGGTAGT-TGCCAAGGCCAAAGACGACAGGTAGAC-TGA
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTGA
* * * * *
3357790 GG-GTAGGAAAGCCTCTAGGGTT
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * * * * *
3357812 AAAGTCGACAGGCAGACT-TGAGGTGAAG-CAGAT-TTTGGGGTCAAAGCCGATAGGCAGA-ATG
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAG-TCTCTAGGGTCAAAGCCGACAGGCAGACTTG
* ** * *
3357873 ATGGTAAGAAAATCT--TAGGATC
63 A-GGTGAGGCAGTCTCCAAGG-TC
* * * * * * * * * ** * * *
3357895 AAAGCCAACTGTCACACT-TGAGATGAAG-TAGTCTCCAGGGCCAAAGTTGATAGGCAGA-GTAA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
*** *
3357957 GGATGAAAAAGT-TTCAAGGTC
64 GG-TGAGGCAGTCTCCAAGGTC
* * * * * * ** * * * ** *
3357978 AAAGTCAAAAAGCAAACT-TGAGGTAAGGCAGTCTTTATGGTCAAAGCAGACAAACAAAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** *
3358041 GGTAAAAAAGTCGCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * * * * * * * **
3358062 AAAGCTAAAAGGGAAACT-TGAG-ACGAGACAGTCTCTAGGGTCAAAGCCGACAGGCAGGCTAAA
1 AAAGCCGACAGGCAGACTAAGGGTA--AGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** * * *
3358125 GGTAAGAAAGTTTCTAGGGGT-
64 GGTGAGGCAGTCTCCA-AGGTC
* * * * * *
3358146 AAAGCCGACAGGCAGACT-TGAGTTAAG---G----TAAGGTCAAAACCGATAGGTAGACTTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** * ** *
3358203 GGTAAGAAAGTTTTTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * * * * *
3358224 AAAGCTGGCAAGTAGATTTCA-GGTGAGATAGTCTCTAGGGTCAAAGTCGACAGGGAGA-TTAAG
1 AAAGCCGACAGGCAGA-CTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * **
3358287 TGTCA-GAAAT-TCCTCGGTGTC
65 -GTGAGGCAGTCTCC-AAG-GTC
* * * ** * *
3358308 AAAGCCGACTA-GTAGACTTAA-GATTAGGTAGTCTCCTA-GGTCAAAGCCAACAGGTAGAC-TG
1 AAAGCCGAC-AGGCAGAC-TAAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTG
* ** * * *
3358369 AAGGTAAGAAAATTTTCAAGGTC
63 -AGGTGAGGCAGTCTCCAAGGTC
* * * * * * *
3358392 AAAGCCAATAGGCAGACT-TGTGATGAGAAAGTCTCCAAGGTCAAAGCC-AGCAGGCAGACTTGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGACTTGA
* *
3358455 TGCT-AGACAGTCTCCAAGGTC
64 -GGTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3358476 AAAGCCGATAGGCAGACTTAGGGTAAGAAAGCCTTTAGAGTCAAAGCTGACAAGCAGAC-TAATG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-G
* ** * ** *
3358540 GTAAGAAAGTATATAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * ** * * * *
3358560 AAAGCTGACAGACAAACTTAA-GGTGAGGTAGTCTCTAGGGTCAAAGTCGGCAAGTAGACTTGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * **
3358624 ATAAGGCAGTC-CTTAGTGTC
65 GTGAGGCAGTCTCCAAG-GTC
* * * * * * * *
3358644 AAAGTCGACAGGCAGACTAACGGTATGAAAGTCTCCAAGGTCAAAACCGACAAGCAGAATTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
3358709 TGAGGCAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * *
3358728 AAAGTCGACAAGCAGACT-TGAGGTAAG---G----TAGGGTCAAAGTCGACTGGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * *
3358785 GGTAAGAAAGTCACCAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * * * *** *
3358806 AAAGCCGACAAGTAGACT-TGAGGTAAGGCAA-TCTCCAAGGTCAACGCCAAGAAATAGAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGTAA-GAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
** *
3358868 GG-GAAAGAAAATCTCC-AGTGTC
64 GGTG--AGGCAGTCTCCAAG-GTC
* * *
3358890 AAAGCCGATAGGCAGACTAAGGGT-AGAAAAGTCT-TCGGGGTCAAAGCCGACTGGCAGACTTGA
1 AAAGCCGACAGGCAGACTAAGGGTAAG-AAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGA
** *
3358953 GACGTGGCAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3358974 AAAGTCGATATGCAGACTTAA-GGTAAGAATA-TTTCTATGGTCATAGTCGACAAGCATACTTGA
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAA-AGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * **
3359037 GGTGAAGTAGT-TCATCAAACTC
64 GGTGAGGCAGTCTC--CAAGGTC
** * * * * * * ** *
3359059 AAAGATGATAGACAAACTGAGGGTAACAAAGTCTATAGGGTCAAAGTTGATAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3359124 TGAGGTAGTCTCGAGGGTC
66 TGAGGCAGTCTCCAAGGTC
** * * * ** *
3359143 AAAGATGATAGGCAGACTAAAGGTAGGAAAGTCTCTAGGGTCAAAGTTGATAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3359208 TGAGGCAGTCT-CTAGTGTC
66 TGAGGCAGTCTCCAAG-GTC
** * * * * * * *
3359227 AAAGCTAATAGGCAAACTGAGGGTAAGAAAGT-TTTCAAGGTCAAAGTCGACAGGCAAAC-TGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
** * * *
3359290 G-GCAAGAAAGTCTCAAAGCTT
65 GTG--AGGCAGTCTCCAAGGTC
* * * * * *
3359311 AAAGTCGACAGGCAGACAAAAGGTTAGAGAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-AG
* *** ** *
3359375 GTAAAAAAGTCTTTAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * ** *** *
3359395 AAAGCCGACAAGAATACT-TGAGGTGAG-GTGCTCTCTAGGGTCAAAATTGACAGGCAGACTTAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAG-TCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* *
3359458 GATGAGGCAGTCT-CTAGTGTC
64 GGTGAGGCAGTCTCCAAG-GTC
* * * * * *
3359479 AAAACTGAAAGG-AGACTAAGGGT-AGAAAAGTCT-TCGGGGTCAAAGCCAATTA-GCAGACTTG
1 AAAGCCGACAGGCAGACTAAGGGTAAG-AAAGTCTCT-AGGGTCAAAGCCGA-CAGGCAGACTTG
* *
3359540 AGTTGTGGCAGTCTCCAAGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * ** *
3359562 AAAGCCAACAGGCAGACTGAA-GGTAAGAAAGTCTCCAGTGTCATAGCTAACAGACAGACTTGAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
*
3359626 GTGAGGTAGT-TGCCAAGGTC
65 GTGAGGCAGTCT-CCAAGGTC
* * * * * * * * * ** *
3359646 AAAGACAACAAGTAGACTGAGGATAGGAAAGCCTCTAGGGTCAAAGCCAATTGGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3359711 TGAAGCAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * * * * *
3359730 AAAGCTGATAGGTAGAGTAAGGGTGAA-AAACTTTCCAAGGTCAAAGTCAAAAAGCAAACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3359794 GTAAGGCAGTCTCTATGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * ** * * * * * * * *
3359814 GAAGCAGACAAACAGACTGAGGGTAAGAAAGTCGCCAAGGTCAAAGCTGACAGGGAAACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3359879 CGAGGCAGTTTTCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
** * * * * * *
3359898 AAAGCCGACAGGCAGACCGATGGTGAGAAAGTCTCTAGGGGCAAAGCCGACAAGCAAACTTGAGT
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3359963 TGA---AG--T--AGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * ** *
3359975 AAAACTGATAGGTAGTCTTGAGGGTAAGAAAGTCTTTAGGGTCAAAGCCGGTAAGCAGACTTGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3360040 GTGAGGTAGTCTCTAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * ** * * ** * * * * * * * *
3360060 CAAGTCGGTAGGCAGATTGAGTATAAGAAATTCTCCAGTGTCAAAGCCAATAAGTAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3360125 TGAGGCAGTCGCCAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * ** * *
3360144 AAAGCCAACAGGCAGACTGAA-GGTAAGAAA-ACTTCGAATGTCAAAGCCAATAGGCAGACTTGA
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTC-TCTAGGGTCAAAGCCGACAGGCAGACTTGA
* *
3360207 GATGAGACAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * * * * * *
3360228 AAAACCAACAAGCAGACTTGATGCT-AGACAGTCTCCAAGGTCAAAGCCGATAAGAAGACTT-AG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** ** *
3360291 GGTAAGAAAG-CTTTTAGGGTC
64 GGTGAGGCAGTC-TCCAAGGTC
* * * * * * * * *
3360312 AAAGCTGACAAGCAGACTAAAGGTAAGAAAGTATGTAGGGTTAAAGCCGATAGGCAAACTTAAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3360377 TGAGGTAGTCT-CTAGGTTC
66 TGAGGCAGTCTCCAAGG-TC
* * * * * ** * ** * ** * *
3360396 AAAGTCGGCAGGTAGACT-TGAGATAAGGCAGTGT-TACATGTTAAAGTTGACAAGCAGAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTA-GGGTCAAAGCCGACAGGCAGACTTGA
**
3360458 GG-GTATGAAAGTCTCCAAGGTC
64 GGTG-A-GGCAGTCTCCAAGGTC
* * * * * ** * * * * * * *
3360480 AAAACCGACAAGCAGAAT-TGAGGTGAGGCAGTCTCCAAGGTGAAAGTCGACAAGTAGACTTTAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
3360544 GTGAGGCAG-------GGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * *
3360557 AAAGTCGACAGGAAAACTTGAA-GGTAAGAAAGTCACCAGGGTCAAAGCTGACAGGTAGACTTGA
1 AAAGCCGACAGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
*
3360621 GGTAAGGCAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3360642 ATAGCCGACAGACAAACTTAGGGTAAAAAATTCGCTAGGGTCAAAGCCGACAGGTAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3360707 TAAGGTAGTCTCTAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * *
3360726 AAAGCCGATAGGCAGACCAAAGGTAAGAAAGTCTTTAGGGTCATAGTCGACAGGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* **
3360791 TAAGGCAGTCT-TTAGTGTC
66 TGAGGCAGTCTCCAAG-GTC
* * * * * * * * * *
3360810 AAAGTCGACAGGTAGACTGAGGGTATGAAAGTCTCCAAGGTCAAAACTGACAAGCAGAATTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
3360875 TGAGGCAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3360894 AAAGTCAATAAGCAGACT-TGAGGT--G--AG--GC-AGGGTCAAAGTCGATAGGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * * *
3360951 GGTAAGAAAGTCACTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * ** * * * **
3360972 AAAGCCGACAGGTGGACTTAA-TGTAAGGCAGTCTCCAAGGTCATAGCCGGTAGGCAGACTT-AG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** * * *
3361035 GGTAAAAAATTCTCTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * *
3361056 AAAGCCGAGAAGCAGACT-TGAGGTGAGGTAGTCTCTAGGGTCATAA-CTGACAAGTATG-C-TG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCA-AAGCCGACAGGCA-GACTTG
* ***
3361117 AGGGTAATAAAGTCTCCAAGGTC
63 A-GGTGAGGCAGTCTCCAAGGTC
* * * ** * * * *
3361140 AAAGCTGACAGGCAGACT-TGAGATAAGGCAGTCTCCAAGGTCAAAGCTGACAAGCAGAC-TGA-
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3361202 GTGTAGGAAAGTCTCTAGGGTC
65 GTG-AGG-CAGTCTCCAAGGTC
* * * * * ** * * * *
3361224 AAAGCCAACAGGTAGACT-TGAGATGAGGCAGTCTCTAGAGTCAAAGCTGACAGGCATA-TTAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
***
3361287 G-GTAAAAATGTCTCCCAA-GTC
65 GTG-AGGCA-GTCT-CCAAGGTC
** * * * * * * * * **
3361308 AAAGTTGATAGGCAGACTAAAGGTTCA-ATAGTCTAC-ACGGTAAAAGTCGACTGGTTGAC-TGA
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTG-
* ** * *
3361370 AGGTAAGAAAGTCTCTATGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * ** * *
3361392 AAAGCTGACAAGCAGACT-TGAGGTGAGGTAGTCTCTAGGGACAAAGCCGACAAGCAGACTTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * *
3361456 ATAAGGCAGTTTCCAATGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3361476 AAAGCCTACAGGTAGACTGAGGATACGAAAGTCT-TCAAGGTCAAAACTGACAGGCAGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
*
3361540 GTGAGGCAGTCTCTAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * *
3361560 AAAGTCGACAGGTAGACT-TGAGGT--G--AG--GC-AGGGTCAAAGCCGACAGGCAAATTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * *
3361617 GGTAAGAAAGTCACCAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * ** * * ** *
3361638 AAAGCCGACAGGCGGACTTGAGAGG--AGGCAGTCTCCAAGGTCAAAATCGACTA-GCAAACTT-
1 AAAGCCGACAGGCAGAC-TAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGAC-AGGCAGACTTG
* *** *
3361699 AGGGTAAAAAATTCTCCAAGGTC
63 A-GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * *
3361722 AAAGCTGACGGGCAGACT-TGAGGTGAGGCAGTCTCTAGGATTAAAGCTGATCA-GCA-AGC-TG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGA-CTTG
* *** * * *
3361783 AGGGTAATAAAGTCACCATGGTT
63 A-GGTGAGGCAGTCTCCAAGGTC
* * * ** * * ** * *
3361806 AAAGCTGATAGGTAGA-TTTGAGATGAGGCAGTCAT-TAGGGTTAAAGTCGACAGGCAGAC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTC-TCTAGGGTCAAAGCCGACAGGCAGACTTGA
* *
3361868 GG-GTA-GCAAAGTCTCTAGGGTC
64 GGTG-AGGC--AGTCTCCAAGGTC
* * * * * * * * * * *
3361890 AAAGCCAACAGGTAGACT-TGAGGTTAGATAATTTTC-AAGGTTAAAGCTGACAGGTAGAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGA-AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** * *
3361952 GGGTTAGAAAGTCTCTAGGGTC
64 -GGTGAGGCAGTCTCCAAGGTC
** * * * * ** * * * * * *
3361974 AAAGCAAACAAGCACACT-TGAGGTGAGGTAGTCTCTAAGGTCAATGCTGATAAAG-AAACTTGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGACTTG-
* *** * *
3362037 AGGTTAAAAAGTCACCAGGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * * ** * * * * *
3362059 AAAGCTGACAGTCACACT-TGAGGTGAGGCAGTCTCCAAGGTCAAAGCGGACAAGTAGACTT-AG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3362122 G-GTAAGAAGGTCTCCAAGGTC
65 GTG-AGGCA-GTCTCCAAGGTC
* * * * * ** * * * * * * *
3362143 AAAGCCAAGAGGCAAACT-TGAGGTGAGGTAGTTTCCAGGGTCAAAACCGTCATGTAGAC-TAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
**
3362206 GATGAGAAAGTCT-CAAGGGTC
65 G-TGAGGCAGTCTCCAA-GGTC
* * * ** * * * ** *
3362227 AAAGCCGACAGGCAGACT-TGAGATGAGGTAGTCCCTACGATCAAAGCTAACAGACAGAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3362290 G-GTAGGAAAGTCTCTAAGGTA
65 GTG-AGG-CAGTCTCCAAGGTC
** * * * * * * *** * * *
3362311 AAAGCTAAAAAGCAAACTTTA-GATGAGGCGGTCTCTAAGGTCAAAGCTGACAGGCAAAC-TGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** * *
3362374 GGTAAGAAAATCTCAAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * ** * * * * *
3362395 AAAGTCGACAGGCAGAC-ATGAGATAAGGTAGTCTCTAAGGTCAAAGCCGAGAGGTATAC-CGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* *** * * *
3362458 GGTAAAAAAATCTCTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * ** *** * ** *
3362479 ATAGTCGACGGGCAGACTTTA-GGTGAGGTAGTCGGGAGGGTTAAAGATGACAGGTAGA-TTGAA
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* **
3362542 GGTAAGAAAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * * *** * * * *
3362563 AAAGCTAACA-GCAGACT-TGAGGTGAGGTTGTCTCTAAGGTCAAAGCTGACAAGCAGAC-TAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** *
3362625 GGTAATAAAGTTTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * * * * ** * *
3362646 AAAGCTTACAGGTAGACT-TGAGATGAGGTAGTCTCTAAGGTCAAAGCCGACAGGCAGA-GTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
** *
3362709 G-GTAGAAAAGTCT-CTAGTGAT-
65 GTG-AG-GCAGTCTCCAAG-G-TC
* * * * * * ** * **
3362730 AAAGCCAACAGGCAGACTTAA-GGTTAGACAGTCTTTAGGGTCAAAGCTGATAGATACACTAAAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** * *
3362794 GTTAGAAAGTCTCTATGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * ** ** * * * * * *
3362814 AAAGTCGATAGACAGACT-TGAGGTGGGGTAGTCTCCAAGGTCAATGCCGACAAGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *** *
3362878 GTAAAAAAGTCACCAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * * ** *
3362898 AAAGACGATAGTCACACTTGAGGGGAAG-CAGTCTCCAAGGTCAAAGCCGACAGTTAGA-TTTAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
** * * *
3362961 G-GTA-AAAGGTTTTCAGGGTC
65 GTG-AGGCA-GTCTCCAAGGTC
* * * * * * *
3362981 AAAGCCGACAGGTAGACTTAA-GGTCAAGTAATTTTCT-TGGTCAAAGCC-ATCACGCAGAC-TA
1 AAAGCCGACAGGCAGAC-TAAGGGT-AAGAAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGACTTG
* *** *
3363042 AGGATAAAAAAGTCT-CAAGGGTT
63 AGG-TGAGGCAGTCTCCAA-GGTC
* * ** * * * * * * * *
3363065 AAAGCTGATAGGTC-GA-TTTGAGATGAGATAGTCTCTATGATCAAAGCTGATAGACAGA-TTGA
1 AAAGCCGACAGG-CAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
*
3363127 GG-GTAGGAAAGTCTCCAAGGTC
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * * * * * * * * *
3363149 AAAGCCAAAAGGCAAACTTTA-GATGAGACAGTCTCTAAGGTCAAAGCTGACAGGTAGAC-TAAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** *
3363212 GGTAAGAAAGTCTCAAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * ** * * * *
3363233 AAAGTCGACAGGTAGACT-TGAGGTAAGGTAGTTTC-AAGGTCAAAGCCGACAAGTAGACTT-AG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3363295 G-GTAAGAAGGTCTCCAAGGTC
65 GTG-AGGCA-GTCTCCAAGGTC
* * * ** * * * * * * *
3363316 AAAGCCAAGAGGCAGACATAA-GGTGAGGTAGTTTCCAAGGTCAAAGCCGTCACGTAGAC-TAAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
***
3363379 GAT-AAAAATGTCT-CAAGGGTC
65 G-TGAGGCA-GTCTCCAA-GGTC
* * * * * * ** * * * * * *
3363400 AAAGCTGACAAGCATACT-TGAGATGAGGTAGTCCCTACGATCAAAGCTGACAGACAAAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** ** *
3363463 GGTAAGAAAGTCTTTAAGGTA
64 GGTGAGGCAGTCTCCAAGGTC
** * * * * * * ** * * *
3363484 AAAGCTAAAAAGCAAACT-TGAGATGAGGCAGTCTCTATGGTCAAAGCTGACAGGCAGAC-TAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** *
3363547 GGTAAGAAAGTCTCAAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * * **
3363568 AAAGTCGATAGGTAGACT-TGAGGTAAGGTAGTTTCCAAGGTCAAAGCCAACAGGCAGACTAAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** * ***
3363632 GTAAGAAAGTTTCTTCGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * ** * * * *
3363652 ATAA-TCGACAAGCAGACT-TGAGGTGAGGTAGTCTCTAGGGTTAAAGACGACTGGTAGA-TTGA
1 A-AAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* *
3363714 GG-GTAGGAAAGTCTCCAAGGTT
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * ** * * * *
3363736 AAAGCCGACAGGTAGACT-TGAGGTGAGGTAGTCTCTAGGGTCAAAGCTGACCGGTAGGC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** *
3363799 GGTAATAAAGTCT-CAAGGGCC
64 GGTGAGGCAGTCTCCAA-GGTC
* * * * * * *
3363820 AAAGCTGACAGGTAGACT-TGAGATCAAGCAA-TCTCTAGGGTCAAAGCTGATAGGCAGAC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3363882 GG-GTAGGAAAGTCTCTAGGGTC
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * * * * * * * *
3363904 AAAGCCAATAGGCAGAC-ATGAGGTTAGACAA-TTTTTAGGGTCTAAGCTGACAGGTAGAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGA-AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* **
3363966 GCGTTAGAAAGTC-CCTAAGGTC
64 G-GTGAGGCAGTCTCC-AAGGTC
** * * * ** * * * * *
3363988 AAAGTTGATAGGCAGACT-TGAGGTGAGGTAGTCTCCAAGGTCAATGCCGACAAGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * *
3364052 GGTAAGAAAGTCAT-GAGGGTC
64 GGTGAGGCAGTC-TCCAAGGTC
* * * * * ** * * * * * *
3364073 AAAGTCGACAGTCACACGTGA-GGTGAGGTAGTCTCCAAGGTCGAAGCCAACAAGAAGACTTTG-
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGAC-TTGA
* * *
3364136 GGT-AAGAAGGTCTCTAAGGTC
64 GGTGAGGCA-GTCTCCAAGGTC
* * * * ** * * ** *
3364157 AAAGTCGATAGGCAAACT-TGAGGTGAAG-CCGTTTCTAGGGTCAAAGCCGTCATACAGAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** *
3364219 GGATAAGAAAGTCTCCAGGGTC
64 GG-TGAGGCAGTCTCCAAGGTC
** * ** ** * * * ** * *
3364241 AAAGTTGACAGGCAGACT-TGATATAAGGTAGTTTCTACGATCAAAGTTGATAGGTAGA-TTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* *
3364304 GGT-AGGAAAGTCCCCAAGGTC
64 GGTGAGG-CAGTCTCCAAGGTC
* * * * * * * * ** * * * * *
3364325 TAAGCCAAAAAGTAGACT-TGAGATGAGGTAGTCTCCAAGGTCAAAGCTGATAGGTAGA-TTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** *
3364388 GGTAAAAAAGTCTCCAAGATC
64 GGTGAGGCAGTCTCCAAGGTC
* * ** * * * **
3364409 AAAGCCGACAGGCAGACT-TGAGGAAAGGTAGTCTCCAAGGTTAAAGCCGACAGGCAGACTAAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
** ** ***
3364473 GCAAGAAAGTCTTTTAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * ** * * ** * *
3364493 ATAGCCGACAGGCAGACT-TGAGGTGAGGTAGTCTCCAGGGTTAAAGATGACAAGCAGAC-TAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3364556 G-GTAGGAAAGTCTCTAAGGTC
65 GTG-AGG-CAGTCTCCAAGGTC
* * * * ** * * * * * **
3364577 AAAGCCGATAGACAGACT-TGAGGTGAGGTAGTCTCTAGTGTTAAAGCCGACTGGTAAACTAAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *** * *
3364641 GTAAAATAGTCTCCAAGATG
65 GTGAGGCAGTCTCCAAGGTC
* * * * ** *** * * *
3364661 AAAGCCGACACGTAAACTGAGGGTAAGAAAGTCTAAAGGGTCAAAGTAAATAGGCAGACTTAAAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3364726 TTAGACAGTCTACAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * *
3364745 AAAGTCGATAGGCAGATTGAA-GGTAAGAAAGTCTCTACGGTCAAAGCTGACAAGTAGACTTGAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** *
3364809 GTGAGGTAGTCTATAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * ** * *
3364829 AAAACTGATAGGCAGGC-ATGAGATAAGGCAA-TCTCCATTGTCAAAGCCGATAGGCAGA-TTAA
1 AAAGCCGACAGGCAGACTAAG-GGTAA-GAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ****
3364891 GG-GTAGGAAAGTCTTTGGGGTC
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * * * ** * * * *
3364913 AGAGCCGACTGGCAGACT-TGAGATGAGGCAGTCTCCAAGGTCAAATCCGACAGGCAAACTTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * * * *
3364977 GTTAGGTAGTTTCTAGGGTT
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * * * * * *
3364997 AAAACCGATAGACAGGCTGATGGTAAGAAAATCTCCAAGGTCAAAGCCAACAAGCAGACTTAAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * ** *
3365062 TGCGGCAGCCTTGAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * ** * * *** *
3365081 AAAGTCGACCA-GCACACTAAGGGTAAGAAAGTCTAAAAGGTTAAAGTAAACAGGCAGACTTAAG
1 AAAGCCGA-CAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * ** *
3365145 GTTAGACAGTCTATAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * *
3365165 AAAGTCGACAAGTAGACTGAA-GGTAAGAAAGTCTCTACGGTCAAAGCTGACAAGTAGACTTGAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3365229 GTGAGGTAGTCT-CTAGAGTC
65 GTGAGGCAGTCTCCAAG-GTC
* * * * * ** * * *
3365249 AAAGCCGACAAGCAGACT-TGAGATAA-AGCAGTCTCCAATGTCAAAGTCGACTGACAGAC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGA-AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
*** *
3365311 GG-GTACAAAAGTCTTCAAGGTC
64 GGTG-A-GGCAGTCTCCAAGGTC
* * * * * ** * *
3365333 AAAACTGATAGGCAGACT-TGAGGTGAGGCAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3365397 GCGAGGCAG-------GGTT
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * *
3365410 AAAGCCAAAAAGTAAATTTGAA-GGTAAGAAAGTCACTAGGGTCAAAGCCGACAGGCAGACTTGA
1 AAAGCCGACAGGCAGA-CT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
3365474 GGTGAGGCAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * * * * * * ** *
3365495 AAAATCGACTGGCAAACTTAGGGTAAAAAATTCTCCAATGTCAAAGCTGAC-GGACAGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGG-CAGACTTGAG
** *
3365559 GTGAGGCAGTCT-GTAGGATT
65 GTGAGGCAGTCTCCAAGG-TC
* * * * * * * ** * * *
3365579 AAAGCTGACAGGCAGGCTGAGGGTAATAAAGTCACCATGGTCAAAGCTAATAGGCAGATTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3365644 TGAGGCAGT-T-AATAGGTT
66 TGAGGCAGTCTCCA-AGGTC
* * * * *
3365662 AAAGTCGACAGGCAGACTGAGGGTAGGAAAGTCTCTAGGGTTAAAGCCAACAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* ** * * * *
3365727 TTAGATAGTTTTCAGGGTT
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * ** *
3365746 AAAGCTGATAAGTATATTGAGGGTTAGAAAGTCTCGAGGGTCAAAGCAAACAGGCAAACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3365811 TGAGGTAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * *
3365830 AATGCTGATAAAG-AAACTTGAA-GGTAAAAAAGTCACCAGGGTCAAAGCCGACAGTCACACTTG
1 AAAGCCGA-CAGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG
*
3365893 AGGTGAGGCAGTCTCTAAGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * * * *
3365915 AAAGCTGACAGGTAGACTTAA-GGTAAGAAGGTCTCCAGGGTCAAAGCCAAGAGGCAAACTTGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * *
3365979 G-GAGGTAGTTTCTAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * ** * * * * * *
3365998 AAAACCGTCTTGTAGACTAAGGATGAGAAAGTCTCAAGGGTCAAAGCTGACAGGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3366063 TGAGGTAGTC-CCTACGTTC
66 TGAGGCAGTCTCC-AAGGTC
* * * * * * ** * ** * * * *
3366082 AAAGCTGAGAGACAGACTGAGGGTAGGAAAGTCTTTAACGTAAAAGCTAAAAAGCAAACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3366147 TGAGGCAGTCTTCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * *
3366166 AAAGCTGACAGGCAAACTCAGGGTAAGAAAGTCTCAAAGGTCAAAGTCGACAGGCAGGCATGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3366231 TAAGGTAGTCTCTAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * *
3366250 AAAGCCGAGAGGCATACCGAA-GGTAAAAAAATCTCTAGGGTCATAGTCGACGGGCAGACTTGAG
1 AAAGCCGACAGGCAGA-CTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *** * *
3366314 GTGAGGTAGTCGGGAGGGTT
65 GTGAGGCAGTCTCCAAGGTC
** * * * * * * *
3366334 AAAGATGACAGGTAGATTGAA-GGTAGGAAAGTCTCCAGGGTCAAA-CGTGACAGGCAGGC-TAA
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGC-CGACAGGCAGACTTGA
* *** *
3366396 GGGTAATAAAGTCTCCAGGGTC
64 -GGTGAGGCAGTCTCCAAGGTC
** * * * ** * * * * *
3366418 AAAGCTTACAGGCAGACT-TGAGATGAGGTAGTCTCCAAGGTCAAAGCTGACAGGAAGA-GTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3366481 G-GTAGGAAAGTCT-CTAGTGTC
65 GTG-AGG-CAGTCTCCAAG-GTC
* * * * * * ** **
3366502 AAAGCCAACAGGCAGACTTAA-GGTTAGAGAGTCTTTAGGGTCAAAGCTGATAGATAGACTAAAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** * *
3366566 GTTAGAAAGTCTCTATGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * ** * ** ** * * * ** * * *
3366586 AAAGTCGATAAACAGACT-TGAGGTGGGGTAGTCTCCAAGGTCAATGTTGACAAGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *** *
3366650 GTAATAAAGTCACCAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * ** *
3366670 AAAGCCGACAGTCACACTTCAGGGGAAG-CAGTCTCCAAGGTCAAAGTCGACAGTTAGA-TTTAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3366733 GATAAAAGGC--T-TTCAGGGTC
65 G-T--GAGGCAGTCTCCAAGGTC
** * * * * * * * *
3366753 AAAATCGACAGGCAGACTTCA-GGTCAAGCAATTTTC-AGGGTCAAAGGC-ATCACGCGGAC-TA
1 AAAGCCGACAGGCAGAC-TAAGGGT-AAGAAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGACTTG
* *** *
3366814 AGGATAAAAAAGTCT-CAAGGGTT
63 AGG-TGAGGCAGTCTCCAA-GGTC
* * * * * * * * * * * **
3366837 AAAGCTGATAGGTAGACT-TGAGATGAGATAGTCTCTATGATCAAAGCTGATAAACAGAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
*
3366900 G-GTAGGAAAGTCTCCAAGGTC
65 GTG-AGG-CAGTCTCCAAGGTC
* * * * * * * * * *
3366921 GAAGCCAAAAAGCAGACTTTA-GATGAGACAGTCTCTAAGGTCAAAGCTGACAGGCAGAC-TGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** * * *
3366984 GGTAAGAAAGTCTCAAAAGTT
64 GGTGAGGCAGTCTCCAAGGTC
* * * ** * * * * *
3367005 AAAGTCGACAGGTAGACT-TGAGGTAAGGTAGTTTCCAAGGTCAAAGCCGACAAGTAGACTT-AG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
*** * *
3367068 G-GTAAAAAGGTCTTCAGGGTC
65 GTG-AGGCA-GTCTCCAAGGTC
* * * ** * * * * *** **
3367089 AAAGCCAAGAGGCAGACTTAA-GGTGAGGTAGTTTCCAAGGTCAAAGCCGTCACATAGAC-CAAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3367152 GAT-AAGAATGTCT-CAAGGGTC
65 G-TGAGGCA-GTCTCCAA-GGTC
* * * * * ** * * * * *
3367173 AAAGCCGACAAGTAGACT-TGAGATGAGGTAGTCCCTACGATCAAAGCTGACAGACAGAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** *
3367236 G-GTAGGAAAGTCTTTAAGGTA
65 GTG-AGG-CAGTCTCCAAGGTC
** * * * * * * ** * * * *
3367257 AAAGCTAAAAAGCAAACT-TGAGATGAGGTAGTCTCCAAGGTCAAAGCTGATAGGCAGAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** * *
3367320 GGTAAGAAAGTCTCAAAAGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * * **
3367341 AAAGTCGACACGTAGACT-TGAGGTAAGGTAGTTTCCAAGGTCAAAGTCGACAGGCAGACTAAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** * ***
3367405 GTAAGAAAGTTTCTTCGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * ** * * * *
3367425 ATAA-TCGACAAGCAGACT-TGAGGTGAGGTAGTCTCTAGGGTTAAAGACGATAGGTAGA-TTGA
1 A-AAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3367487 GG-GTAGGAAACTCTCCAAGGTT
64 GGTG-AGG-CAGTCTCCAAGGTC
* * ** * * * *
3367509 AAAGCCGACAGGCAGACT-TGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGACAAGTAGACTTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * * *
3367573 ATCAAGCAATCTCTAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * *
3367593 AAAGCTGATAGGCAGACTGAGGGTAGGAAAGTCTCTAGGGTCAAAGCCAACAGGCAGACATGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * * ** *
3367658 TTAGACAATTTTTAGGGTC
66 TGAGGCAGTCTCCAAGGTC
** * * * ** * *
3367677 AAAGCTAACAGGTAGACTAAGGGTTAGAAAGTCCCTAGGGTCAAAGTTGATAGGTAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3367742 TGAGGTAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * *
3367761 AATGCCGACAAGCAAACTTGAA-GGTAAGAAAGTCACCAGGGTCAAAGTCGACAGTCACACGTAA
1 AAAGCCGACAGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
*
3367825 GGTGAGGTAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * * *
3367846 GAAGCCAACAAGAAGACTTCGGGTAAGAAGGTCTCTAAGGTCAAAGTCAATAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3367911 TGAGGCCGTTTCTAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* ** * * * ** * * *
3367930 AAAGCCGTCATACAGAATAAGGATAAGAAAGTCTCCAGGGTCAAAGTTGACAAGCAGACTTGCGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3367995 TGAGGTAGTCTCTACGATC
66 TGAGGCAGTCTCCAAGGTC
** * * * * * * * * * * *
3368014 AAAGTTGATAGACAGACTGAA-GGTAGGAAAGTCCCCAAGGTCTAAGCCAAAAAGTAGACTTGAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3368078 ATGAGGGAGTCTCCAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3368098 AAAACTGACAGGCAGATTGAGGGTAAGAAAGTCTCCAAGATCAAAGCTGACAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3368163 TAAGGTAGTCTCCAAGGTT
66 TGAGGCAGTCTCCAAGGTC
* * * * *
3368182 AAAGCCGACAGGCAGACTAAAGGCAAGAAAGTCTCTTGGGTCATAGCCGACAGGCAGACTTGAAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3368247 TGAGGTAGTCTCCAGGGTT
66 TGAGGCAGTCTCCAAGGTC
** * * * * * *
3368266 AAAGATGACAAGCAGACTGAGGGTAGGAAAGTCTCTAAGGTCAAAGCCGATAGACAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3368331 TGAGGTAGTCT-CTAGTGTC
66 TGAGGCAGTCTCCAAG-GTC
* * * * * * * * * *
3368350 AAAGCCGACAGTCAAACTGAA-GGTAAAAAAGTCTCCAAGATGAAAGCCGACAAGCAAAC-TAAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** *
3368413 GGTAAGAAAGTCT-AAAGGGTC
64 GGTGAGGCAGTCTCCAA-GGTC
*** * * * * * * * **
3368434 AAAGTAAACGGGCAGACTTAA-AGTTAGACAGTCTAC-AAGGCCAAAGTCGACAGGCAGACTCAA
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** * *
3368497 GGTAAGAAAGTCTCTATGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * *
3368518 AAAGCTGACATGCAGACT-TGAGGTGAGGCAGTCTATAGGGTCAAAACAGATAGGCAGACTTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * * **
3368582 ATAAGGCAATCTCTATTGTC
65 GTGAGGCAGTCTCCAAGGTC
* ** * * *
3368602 AAAGCCGATAGGCAGACTAAGGGTCGGAAAGTCTTTAGGGTCAGAGCCGACTA-GCAGACATGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGAC-AGGCAGACTTGAG
* * *
3368666 ATGACGCAGTCTCCATGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * ** * *
3368686 AAATCCGACAGGCAAACT-TGAGGTTAGGTAGTCTCTAGGGTGAAAGCCGATAGGCAGGA--TGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCA-GACTTGA
* *** * *
3368748 TGGTAATAAAATCTCCAGGGTC
64 -GGTGAGGCAGTCTCCAAGGTC
* * * ** ** * * * *
3368770 AAAGCCAACAAGCAGACTTAA-GATGCGGTAGCCT-TGAGGGTCAAAGTCAACCA-GCACACTAT
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGA-CAGGCAGACT-T
* ** * *
3368832 G-GGTAAGAAAGTCT-AAAGGGTT
62 GAGGTGAGGCAGTCTCCAA-GGTC
*** * * ** *
3368854 AAAGTAAACAGGTAGACTTAA-GGTTAGACAA-TCTAC-AGGGTCAAAGTTGACAGGTAGAC-TG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGA-AAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTG
* ** * *
3368915 AAGGTAAGAAAGTCTCTATGGTC
63 -AGGTGAGGCAGTCTCCAAGGTC
* * * ** * *
3368938 AAAGCTGACAAGCAGACTTGAA--GTGAGGTAGTCTCTAGGGTCTAAGCCGATAGGCAGACTTGA
1 AAAGCCGACAGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3369001 GATAAGGCAGTCTCCAATGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3369022 AAAGTCGACTGGCAGACTGAGAGTACA-AAAGTCT-TAAAGGTCAAAACTGATAAGCAGACTTGA
1 AAAGCCGACAGGCAGACTAAGGGTA-AGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGA
*
3369085 GGTGAGGCTA-TCTCTAAGGTC
64 GGTGAGGC-AGTCTCCAAGGTC
* * * * * * * * * * *
3369106 AAAGTCAACAGGCAAACT-TGAGGT--G--AG---GTAGGGTTAAAGCCGAAAAGCAAATTTCAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTT-GA
* ** *
3369163 GGTAAGAAAGTCCCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * ** * * ** * * *
3369184 AAAGCCGACAGGCAAACT-TGAGGTGAGGTAGTCTCCAAGGTCAAAATCAATAGGCACACTT-AG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** *
3369247 GGTAAAAAATTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3369268 AAAGCCGACGGGCAGACT-TGAGGTGAAG-CAGTCTTTAAGATTAAAGCTGACAGGCAGGC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* *** * *
3369330 GGGTAATAAAGTCTCCATGGTT
64 -GGTGAGGCAGTCTCCAAGGTC
* * ** ** ** * ** * *
3369352 AAAACTGACAGGCAGA-TTTGAGAAAAGGTAGTCAT-TAGGGTTAAAGTTGACAGACAGAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTC-TCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3369414 GG-GTAGGAAAGTCTCTAGGGTC
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * * * * * ** *
3369436 AAAGCCAACAGGCAGACT-TGAGGTTAGACAGT-TTTCAGGGTTAACGTTGACAGGTAGA-TTGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGA
* ** * *
3369498 GGGTTAGAAAGTCTCTAGGGTC
64 -GGTGAGGCAGTCTCCAAGGTC
* * * * * ** * * *
3369520 AAAGCC-AGCAAGTAAACT-TGAGGTGAGGTAGTCT-TCGAGGTCAATGCCGACAAGG-AAACTT
1 AAAGCCGA-CAGGCAGACTAAG-GGTAAGAAAGTCTCTAG-GGTCAAAGCCGAC-AGGCAGACTT
* ** *
3369581 GAAGGTAAGAAAGTCACCAAGGTC
62 G-AGGTGAGGCAGTCTCCAAGGTC
* * * * * ** * * * * *
3369605 AAAGCCGATAGTCACAGTTAA-GGTGAGGCAGTAT-TCAAGGTCAAAGCCAACAAGTAGACTT-A
1 AAAGCCGACAGGCAGA-CTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGA
* *
3369667 GG-GTAAGAAGGTCTCCAAGGTC
64 GGTG-AGGCA-GTCTCCAAGGTC
* * * * * ** * * * * * *
3369689 AAAGCCAAGAGGCAAACT-TGAGGTGAGGTAGTTTCGAGGGTCAAAGCCGTCACGTAGAC-TAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
**
3369752 GATGAGAAAGTCT-CAAGGGTC
65 G-TGAGGCAGTCTCCAA-GGTC
* * * * * * ** * * ** * * *
3369773 AAAGTCGACAAGTAGACT-TGAGATGAGGTAGTC-CTTATGATCAAAGTTGAAAGACAAAC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTC-TAGGGTCAAAGCCGACAGGCAGACTTGA
* *
3369835 GG-GTAGGAAAGTCTCTAAGGT-
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * * * * * * ** * * * * *
3369856 AAAACCTAAAAAGCAAACT-TGAGATGAGGCAGTCTCCAAGGTCAAAGCTGATAGGCAGAC-TAA
1 AAAGCC-GACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** *
3369919 GGGTAAGAAAGTCTCAAAGGTC
64 -GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * * * **
3369941 AAAGTCGATAGGTAGACT-TGAGGTAAGGTAGTTTCCAAGGTCAAAGGCGACAAGTGGACTT-AG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * *
3370004 G-GTAAGAAGGTCTCTAGGGTC
65 GTG-AGGCA-GTCTCCAAGGTC
* * * * * ** * * * * * * *
3370025 AAAGGCAAGAGGCAGACT-TGAGGTGAGGTAGTTTCCAAGGTCAAAGCCGTCACGTAGAC-TAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3370088 GAT-AAGAATGTCT-CAAGGGTC
65 G-TGAGGCA-GTCTCCAA-GGTC
* * * * * ** *
3370109 AAAGCTGACAGGTAGACTAAGGGTTAGAAAGTCCCTAGGGTCAATGTTGATAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3370174 TGAGGTAGTCTCCAAGGT-
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * *
3370192 AAATGCCGACAAGCAAACTTGAA-GGTAAGAAAGTCACCAAGGTCAAAGTCGATAGTCACACGTG
1 AAA-GCCGACAGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG
* *
3370256 AGGTGAGGTAGTCTCAAAGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * * *
3370278 GAAGCCAACAAGAAGACTTCGGGTAAGAAGGTCTCTAAGGTCAAAGTCGATAGGCAAACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3370343 TGAGGCCGTTTCTAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* ** * * ** **
3370362 AAAGCCGTCATACAGACTAAGGATAAGAAAGTCTCCAGGGTCAAAGTTGACAGGCAGACTTGATA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3370427 TGAGGTAGTCTCTACGATC
66 TGAGGCAGTCTCCAAGGTC
** * * * * * * * * * * * * *
3370446 AAAGTTGATAGACAAACTGAA-GGTAGGAAAGTCCCCAAGGTCTAAGCCAAAAAGTAGACTTAAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** ** *
3370510 AT-ACGGCAACCTTGAGGGTC
65 GTGA-GGCAGTCTCCAAGGTC
* * ** * * * *
3370530 AAAGTCGACCA-GCACACT-AGGGTAAGAAAGTCTAAAGGGTTAAAGTCAACAGGCAGACTTAAG
1 AAAGCCGA-CAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** * *
3370593 GTTAGATAGTCTACAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3370613 AAAGTCGACAGGTAGACTGAA-GGTAAGAAAATCTCTATGGTCAAAGCTGACAAGCAGGCTTAAA
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3370677 GTGAGGTAGTCTCTAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * ** * ** * *
3370697 AAAGCCGACAAGCAAACT-TGAGATAAGGTAGTCTCCAATGTCAAAGCCAACTGGCAGAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
*** * *
3370760 G-GTACAAAAGTCTTCAACGTC
65 GTG-A-GGCAGTCTCCAAGGTC
* * * * * ** * * *
3370781 AAAACTGATAGGCAGACT-TGAGGTGAGGCAGTCTCTAAGGTCAAAGTCGATAGGCAGACTTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
3370845 GTGAGGCAG-------GGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3370858 AAAGCCGAAAGGCAAATTTGAA-GGTAAGAAAGTCACCAAGGTCATAGCCGATAGGCAAACTTGA
1 AAAGCCGACAGGCAGA-CT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
*
3370922 GGTGAGGTAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
*** * * * * * * * *
3370943 AAAATTGATAGGTAGACTTAGGGTAAAAAATTCTCAAAGGTCAAAGCCGACGGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* ** *
3371008 TGAGGCAGTAT-TTAGGATT
66 TGAGGCAGTCTCCAAGG-TC
* * * * * ** * *
3371027 AAAGCTGACAGGCA-AGCTGAGGGTAATAAAGTCTCCAGGGTCAAAACTAACAGGCAAATTTGAG
1 AAAGCCGACAGGCAGA-CTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
** * * *
3371091 AAGAGGCAGTCAT-TAGGGTT
65 GTGAGGCAGTC-TCCAAGGTC
*** * * * * * *
3371111 AAAATTGGCAAGCAGACTGAGGGTAGGAAAGTCTCTAGGGTCAAAGCCAACAGGTAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * * * *
3371176 TTAGACAGTTTTCAGGGTT
66 TGAGGCAGTCTCCAAGGTC
* * * ** * *
3371195 AAAGCTGACAGGTAGACTAAGGGTTAGAAAGTCTCTAGGGTCAAAGCTAACAAGCAAACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3371260 TGAGGTAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * *
3371279 AATGCCGACAAGG-AAACTTGAA-GGTAAGAAAGTCACCAGAGTCAAAGCTGACAGTCACACTTG
1 AAAGCCGAC-AGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG
* ** *
3371342 AGGTGAGGTAGTCTTTAAGATC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * * * * * * *
3371364 GAAGCCAACAAGTAGACTTAGGGTAAGAAGGTCTCCAGGGTCAAAGCCAAGAGGCAAACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
** * * * *
3371429 TGAGATAGTTTTC-TGTGTT
66 TGAGGCAGTCTCCAAG-GTC
* * * * * * *
3371448 AGAGCC-ATCACGCAGACTAAGGATGAGAAAGTCTCAAGGGTCAAAGTCGACAGGCAGACTTGCG
1 AAAGCCGA-CAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * *
3371512 ATGAGGTAGTC-CCTACGATC
65 GTGAGGCAGTCTCC-AAGGTC
* * ** * * * * ** * * * *
3371532 AAAGCTGAAAGATAGACTGAGGGTAGGAAAGTCTCTATGGTAAAAGCTAAAAAGCAAACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3371597 TGAGGTAGTCTCCAAGGTT
66 TGAGGCAGTCTCCAAGGTC
* * * * *
3371616 AAAGCTGACAGGCAGACTGAGGGTAAGAAAGTCTCAAAGGTCAAAGCCGACAAGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3371681 TAAGGTAGTCTCTAAGGTT
66 TGAGGCAGTCTCCAAGGTC
* * * * * * *
3371700 AAAGCC-ATTAGGCAGACCGAA-GGTAAAAAAGTCTCTAGGGTCATAGTCAACGGGCAGACTTGA
1 AAAGCCGA-CAGGCAGA-CTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * * *
3371763 GGTGAGGTAGTTTGCAAGGTT
64 GGTGAGGCAGTCTCCAAGGTC
** * * * * * * * *
3371784 AAAGATGACAAGTAGATTGAA-GGTAAGAAAGTTTCCAGGGTTAAAGCTGACAGGCAGACTTTAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * *
3371848 GTGACGCTGGCTCTAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * ** *
3371868 AAAGCTGACAGGTAAACTGAGGGTAATAAAGTCTCTAGGGTCAAAGCTTACAAAG-AGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGAC-AGGCAGACTTGAG
* * *
3371932 ATGATGTAGTCTCCAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * ** * * * * *
3371952 AAAGCCGACGGGCAGAGTGAGGGTTGGAAAGTCTTTAGTGTCAAAGCCAACAGGCAAACTGGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * ** *
3372017 TTAGACAGTCTTTAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* ** * ** * * * * *
3372036 AAATCTTATAGATAGAATAAAGGTTAGAAAGTCTCTATGGTCAAAGCCGATAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3372101 TGGGGTAGCCTCCTAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * * *
3372120 AATGCTGACAAGCAAACTTGAA-GGTAAGAAAGTCACCAAGGTCAAAGCTGATAGTCACACTTGA
1 AAAGCCGACAGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3372184 GGGGAAGCAGTCTCCAATGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * ** * * * * * * * *
3372205 AAATCTGATAGTTAGATTTAGGGTAA-AAGGTTTTTAGGGTCAAAACTGACAGGCCGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * * *
3372269 TCAAGCAATTTCCAAAGTC
66 TGAGGCAGTCTCCAAGGTC
* * ** * * * * * * * *
3372288 AAAGCTGTCACACAGACTAAGGATAATAAAATCTCAAGGGTCAAAGCCAATAGGTAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
** * * *
3372353 TGAGATAGTCTCTACGATC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * * *
3372372 AAAGCTGATAGACAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCAAAATGCAGACTTCAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3372437 TGAGGCAGTTTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
** * * * * * *
3372456 AAAGCTAACAGGCAGACTGAGGGTAAGAAAGTCTCAAAGGTCAAAGTCGACAGGTAGAGTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3372521 TAAGGTAGTTTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * ** * * * *
3372540 AAAGGCGACAAGTGGACTTAGGGTAAGAAGGTCTCCAGGGTCAAAGCC-AGGAGGCAGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGACTTGAG
* * *
3372604 GTGAGGTAGTTTCCAAGGTT
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * ** * * *
3372624 AAAGCCGTCATGTAGACTAAGGATAAGAATGTCTCAATTGTCAAAGCTGACAGGTAGAC-TAAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-G
* *** *
3372688 GTTAAAAAGTC-CCTAGGGTC
65 GTGAGGCAGTCTCC-AAGGTC
* ** * * * * ** * * * * *
3372708 AATGTTGATAGGTAGACT-TGAGGTGAGGTAGTCTCCAAGGTCAATGCCGACAAGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
** ** *
3372772 GGCAAGAAAGTCAT-CAGGGTC
64 GGTGAGGCAGTC-TCCAAGGTC
** * * * * * ** * * * * * * *
3372793 AAAATCGATAGTCACACGTGA-GGTGAGGTACTCTCAAAGGTCGAAGCCAACAAGAAGACTT-AG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3372856 G-GTAAGAAGGTCTCTAAGGTC
65 GTG-AGGCA-GTCTCCAAGGTC
* ** * * * *** * * * ** *
3372877 AAAGTCGATGGGTAGACT-TGAGGTGAGGCCGTTTTTAGGGTCAAAGCCGTCATACAGAC-TAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* **
3372940 GATAAGAAAGTCTCCAAGGTC
65 G-TGAGGCAGTCTCCAAGGTC
** * * * ** * * ** * * *
3372961 AAAGTTGACAGGCGGACT--TGATATGAGGTAGTCTCTAAGATCAAAGTTGATAGACAAAC-TGA
1 AAAGCCGACAGGCAGACTAAGGGTA--AGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3373023 TGGT-AGGAAATTCCCCAAGGTC
64 -GGTGAGG-CAGTCTCCAAGGTC
* * * * * * * ** * * *
3373045 TAAGCCAAAAAGTAGACTTAA-GATGAGGCAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** **
3373108 GGTAAGAAAGTCTTAAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * * * *
3373129 AAAGTCAACAGGTAGACT-TGAGGTAAGGTAGTTTCCAAGGTCAAAGCCGACAAGCAAACTAT-T
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACT-TGA
* ** * ***
3373192 GGTAAGAAAGTTTCTTCGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * * ** * ** * * * *
3373213 ATGGTCGACAAGCAGA-TTTGAGGTGAGGCAGTCTCTAGGGTTAAAGACGACAGGTAGA-TTAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3373276 G-GTAGGAAAGTCTCAAAAGTC
65 GTG-AGG-CAGTCTCCAAGGTC
* * * ** * * *
3373297 AAAGCCGATAGGCAGACT-TGAGGTGAGGTAGTCTCTAGGGTCAAAGCTGACAGGTAGGC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** * *
3373360 GGTAATAAATTCTGCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3373381 AAAGCTGACAGGTAGACT-TGAGATCAAGCAA-TCTCTAGGGTCAAAGCTGATAGGTAGAC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* *
3373443 GG-GTAGGAAAGTCT-CTAGGATC
64 GGTG-AGG-CAGTCTCCAAGG-TC
* * * * * * *** *
3373465 AAAGCCAACAGGCAGAC-ATGAGGTTAGACAA-TCTTTAGGGTCAAAACTGACAGGTTTAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGA-AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** *
3373527 GGGTTAGAAAGTC-CCTAGGGTC
64 -GGTGAGGCAGTCTCC-AAGGTC
** * * * ** * * * * * *
3373549 AAAGTTGACATGCAGACT-TGAGGTGAGGCAGCCTCCAAGGTCAATGCCGACAAGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * *
3373613 GGTAAGAAAGTCACCAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * ** * * * * *
3373634 AAAGTCGACAGTCACG-CGTGA-GGTGAGAAAGTCTCCAAAGTCGAAGCCAACAAGTAAACTT-A
1 AAAGCCGACAGGCA-GAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * * *
3373696 GG-GTAAGAAGGTCTCTAGGGTC
64 GGTG-AGGCA-GTCTCCAAGGTC
* * * *** * * ** * * *** * **
3373718 AAAGTCGATAGGCAGACT-TGAGGTAAGGCCGTTTCCAACGTCAAATCCGGCATATAAACTAAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * ** *
3373782 ATAAGAAAGTCTCTAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
** * * * * ** * * ** * *
3373802 AAAGTTGACAGACAGACT-TGAGATGAGGTAGTCTCTACGATCAAAGTTGATAGACAGAC-TGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
*
3373865 GGT-AGGAAAGTC-CCTAAGGTC
64 GGTGAGG-CAGTCTCC-AAGGTC
* * * * * * * * * * * * *
3373886 TAAGCCAAAAAGTAGACT-TGAG-ATGATGCAGTCTCCAAGATCAAAGCCGACAAGCAGACTTGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGA--AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * * *
3373949 GGTAAGGTAGTCACTAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * ** * ** * **
3373970 AAAGCCAACAGGTAGACT-TGAGGTAAGGTAGTCTCTAAGGTCAAAGTTGACAGGCGGACTAAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
** ** ***
3374034 GCAAGAAAGTCTCTTGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * ** * * ** * *
3374054 ATAGCCGACAGGCAGACT-TGAGGTGAGGTAGTCTCCAGGGTTAAAGATGAGAAGCAGACTT-AG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
** *
3374117 G-GTAGAAAAGTCTCCAAGGTT
65 GTG-AG-GCAGTCTCCAAGGTC
* * * * ** * * * * ** *
3374138 AAAGCCGATAGACAGACT-TGAGGTGAGGTAGTCTCTAGTGTGAAAGACGACAGGCAAACTAAAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *** * *
3374202 G-AAAAAAGTCT-CTAGGATG
65 GTGAGGCAGTCTCCAAGG-TC
* * * * ** *** *
3374221 AAAGTCGACAAGCAAACTGAGGGTAAGAAAGTCTAAAGGGTCAAAGTAAACAGGCAGACTTAAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * * *
3374286 TTAGACTGTCTACAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * *
3374305 AAAGTCGACAGGCAGACTGAA-GGTAAGAAAGTCTCTACGGTCAAAACTGACAAGCAGACTTGAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3374369 GTGAGGTAGTCTCTAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * ** * * *
3374389 AAAACTGATAGGCAGACT-TGAGATGAGGTAA-TCTCCAATGTCAAAGTCGACAGGTAGAC-TAA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ****
3374451 GG-GTAGGAAAGTCTTTGGGGTC
64 GGTG-AGG-CAGTCTCCAAGGTC
* * * * * * * * * *
3374473 AGAGCCGACTGGCAGACT-TGAGATGAGGCAA-TCTCAATGGTCAAATCCGACAGGCAAACTTGA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * * *
3374536 GGTTAGGTAGTCT-CTAGAGTT
64 GGTGAGGCAGTCTCCAAG-GTC
* * * * * * * * * ** * * *
3374557 AAAGCTGACAAGCAGGCTGATGGTAACAAAATCTCCAGGGTCAGAGCAAACAAGCAGACTTAAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * ** *
3374622 TGCGGCAGCCTTGAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * ** *
3374641 AAAGTCGACCA-GCACACTGAA-GGTAAGAAAGTTTCAAAGGTCAAAGCCGACAGATAAACTTGA
1 AAAGCCGA-CAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** *
3374704 CGTGAGGTGGTCTCTAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * *
3374725 AAAGCCGACAGGCAGACTAAAGGTAAGAAAGCCTCTAGGGTTAAAGCCGATAAGCAAACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
** ** * ** *
3374790 TTCGATAGTCTTCGGGGTT
66 TGAGGCAGTCTCCAAGGTC
** * * * * * * * * *
3374809 AAAGTTGATAGGCAGACTGATGGT-AGAAAACTCTCCAAGGTCAAAGCTGACCGACAGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAG-AAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * *
3374873 GTTAGGTAGTTTCCAAGGTT
65 GTGAGGCAGTCTCCAAGGTC
* *** * * * * * * *
3374893 AAAGCC-A-AGGCAAACTAAACTTAAAAAAGTTTCTAGGGTCAAAGCTGACTGGCAGGCTTAAAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3374956 TGAGGTAGTTTCCAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * ** * *
3374975 AAAGCCGACAGGTAGACT-TGAG-ACGAGGCAGTCTCTTA-TGTCAAAGCCGACAAGCAGAC-TG
1 AAAGCCGACAGGCAGACTAAGGGTA--AGAAAGTCTC-TAGGGTCAAAGCCGACAGGCAGACTTG
* * * *
3375036 AGG-GTAGGAAATCTCTAAGGTT
63 AGGTG-AGGCAGTCTCCAAGGTC
** * * * * ** * ** *
3375058 AAAATCGACAGGCAAACT-TGAGATGAGGCAGTCTAC-GGGGTCAAATTCGATAGGCAGACTTGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3375121 GGTTG-GGTAGTCTCTAGGGTC
64 GG-TGAGGCAGTCTCCAAGGTC
* * * * * *
3375142 AAAGCTAGA-AGGCAGACTAATGGTAAGAAAATCTCTAGGGTCAAAGCCAACAAGTAGACTTGAG
1 AAAGC-CGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3375206 ATGAGGTAGTCTCCTAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * * *
3375226 AATGCAGACAAGCAGACTCAA-GGTAATAAAGT-TACCAAGGACAAAGCCGACAAGCAAACTAGA
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTGA
*
3375289 -G-GAGACAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * * * * * * *
3375308 AAAGTTGACAAGCAGACTAAAGGTAAAAAAGTCTCCAGGGTCAAAGTCGATAGGCA-AATTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-G
* ** * *
3375372 GTTAGAAAGTCTTCAAAGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3375392 AGTA-CCGACAGGCAGACT-TGAGATGAGGCAA-TCTAC-ATGGTCAAAGCCGATAAGCAAAC-T
1 A-AAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTT
* ** ** ** *
3375452 GAGGGTAAGAAAACCT-TTAGGTTT
62 GA-GGTGAGGCAGTCTCCAAGG-TC
* * * * * ** * * *
3375476 AAGGCCAACAGGCAGACT-TGAGGTTAGACAGTCT-TCAGGGTCAAAGCTAACAGGTAGACTAGG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGA
* *** ** *
3375539 GGTAAAAAAGTCTTTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * ** * * * * *
3375560 AAAGCCGACAGACAGACT-TGAGGTGAGGTAGTCTCCAAGGTCAATGCCAATAGGCAGACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* * ** * * *
3375624 TGTAAGAAAGTCACCATGGCC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * * * * * *
3375645 AAA-CCTGACAGTCACACT-TGAGGTGAGGCATTCTCAAAGGTTAAAGCTGATAGGTAGACTT-A
1 AAAGCC-GACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3375707 GG-GTAAGAAGGTCT-CTAGGATC
64 GGTG-AGGCA-GTCTCCAAGG-TC
* * * * * * *
3375729 AAAGCCGATAGGTAGACT-TGAGGTGAGGCAA-TTTTTAGGGTCAAAGCCGACAGAG-AGAC-TG
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAG-GCAGACTTG
* *** * *
3375790 AGGGTAAAAAAGTCTCGAGGGTC
63 A-GGTGAGGCAGTCTCCAAGGTC
* * * ** * **
3375813 AAAGCCGACTGGCAGGCTTAA-GATAAGGTAGTCTTTAGCATCAAAGCCGACAGGCAGAC-TGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** *
3375876 GGTAAGAAAGTCTCCTAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * ** * * ** *
3375897 AAAGCCAGA-AAGCAGGCT-TGAGATAAGGCAGTCTCCAAGGTCAAAGTTGACAGGCAAAC-TGA
1 AAAGCC-GACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* ** **
3375959 GGGTAAGAAAGTCTTGAAGGTC
64 -GGTGAGGCAGTCTCCAAGGTC
* ** *
3375981 AAAGCCGACAGGCAGACT-TGAGGTAAGGTAGTCTCTAGGGTCAAAGCCGACAAAG-AGAC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGAC-AGGCAGACTTG-
* ** * *
3376043 AGGTAAGAAAGTCTCTAGGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * ** * ** * *
3376065 ATAGCCGACAGGTAGACT-TGAGGTGAGGTAGTCTCTAGGGTTAAAGATGATAGGTAGAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3376128 G-GTAGGAAAGTCTCCAGGGTC
65 GTG-AGG-CAGTCTCCAAGGTC
* * * * * ** * * **
3376149 AAAGCCGATAAGTAGACT-TGAGGTGAGGCAGTCTCTAGTGTCAAAGCCGATAGGCAGACTAAAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
*** **
3376213 AAAAGAAAGTCT-CAAGGGTC
65 GTGAGGCAGTCTCCAA-GGTC
** * * * * * * * * *
3376233 AAAGTAGATAGGCAGACT-TGAGGTTAGACAGTCTCCAAGGTCCAAGTCGATAGGCAGAC-TGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * *
3376296 GGTAAGAAAGTCTCTACGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * **
3376317 AAAGCCGACAAGCAGACT-TGAGGTGAAG-TAGTCTCTAGGGTCAAA-CTGATGGGCAGACTTGA
1 AAAGCCGACAGGCAGACTAAG-GGT-AAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* * * * *
3376379 GATAAGGTAGTCT-CTAGTCTC
64 GGTGAGGCAGTCTCCAAG-GTC
* * * * * *
3376400 AAAGCCGATAGGCAGACTAAGGGTAGGAAAGTCTTTAGGGTCAAAGCCGGCAGGCAAACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3376465 TCAGGCAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3376484 AAAGCTGACAGCCAGACTGAGGGCAAAAAAGTTTCCAAGGTTAAAGCCGACAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3376549 TAAGGTAGTCTCTAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * ** * * * *
3376568 AAAGTCGACAGACAGACTTGAGGGGT--GGTAGTCTCTAGTGACAAAGCTGACAAGCAGA-TTGA
1 AAAGCCGACAGGCAGAC-T-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-
* * *
3376630 AGGT-AGGAAAGTCTCTATGGTC
63 AGGTGAGG-CAGTCTCCAAGGTC
* * * * * ** * * * ***
3376652 AAAACCGATAGGCAGACTTAGGATGAGGCAGTCTCCAGGGTCAAATCTGGTTGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* ** *
3376717 TTAGGTGGTCTCTAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3376736 AAAGCCGATAGGCAGATTGATGGTAAGAAAATCTCCAGGCTCAAAACC-AGTAGGCAGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGA-CAGGCAGACTTGAG
* * *
3376800 ATGAGGAAGTCTCCAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * ** * *
3376820 AAAGCCAACAAGCAGACTGAGGGTAAGAAAGT-TTTCAAGGTCAAAGTTGATAGGCAAACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
3376884 GTGAGGCAGTCTCCAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * *
3376904 AAAGTCGATAGGTAGACTAAAGGTAAGATAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
** *
3376969 TTTGGTCA-TCTCCAAGGTT
66 TGAGG-CAGTCTCCAAGGTC
* * * * *
3376988 AAAGCCGATAGGCAGACTAAGGGTAAAAAACTTTCTAGGGTCAAAGCTGACAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * * *
3377053 TTAAGTAGTCGCC-AGGCTC
66 TGAGGCAGTCTCCAAGG-TC
* * * * * * * * *
3377072 AAAGCCG--AGGCAAACTAAAGGTGAGAACGTCTCTAGGGTCAAAGCCTATAGGCAGACCTAAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3377135 CGAGACAGTCTCC-AGTGTC
66 TGAGGCAGTCTCCAAG-GTC
* * * * * ** * ** * * *
3377154 AAAGTCGACAAGCAGACTGAGGGTAGGAAA-TCTATAACGTTAAAAACGACAAGCAAACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3377218 TGAGGCAGTCTCTAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* *** * * * ** ** * * *
3377237 CAATTTGGCTGGCAGACT-TGAGGTTTGGTAGTCTCTAGGGTCAAAGCTGACAGGTAGAC-TAAT
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* ** * * *
3377300 GGTAAGAAAATCTCTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * ** * * *
3377321 AAAGCCAATAGGAAGACT-TGAGATGAGGTAGTCTCTTGGGTTAAAGCCGACAAGCAGAC-TGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-
* *** * *
3377384 GGTAAAAAAGTCACCAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * *
3377405 AAAGCTGACAAGG-AAACTTAA--G-ACGATATAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-T
1 AAAGCCGAC-AGGCAGAC-TAAGGGTAAGA-A-AGTCTCTAGGGTCAAAGCCGACAGGCAGACTT
* ** * * *
3377465 GAAGGTAAGAAAGTCTCTAGGGGC
62 G-AGGTGAGGCAGTCTCCAAGGTC
* * * * * * * * * * *
3377489 AAAGCCGATAGGCAGACT-TGAGT-TG--AG---GTAAGGTTAAAACCGATAGGTAAACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-G
* ** ** *
3377547 GTTAGAAAGTCTTTAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
** ** * * * * ** ** *
3377567 AAATTCGGTAAGTAGACT-TGAGGTGAGGTAGTCTCTAGGGTCAAAGTTGATAGGCAGA-TTGAG
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* ** * * *
3377630 TGTAAGAAATTCTTC-GGTGTC
65 -GTGAGGCAGTCTCCAAG-GTC
* * * * * * ** * * * *
3377651 AAAGCAGACAAGTAGACT-TGAGATGAGGCAGTCTCCAAGGTCAAAGCCAACAGGCTGA-TTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * *
3377714 GGTAAGAAAATTTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
** * * * * * * * * *
3377735 AAAGCTAATAGGTAGACTTAA-GATGAGACAGTCTCCAAGGTTC-AAGCCAATAGGCAGACTTGA
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTGA
* * *
3377798 TGCTTTA--TAGTCTCCAAGGTC
64 -G-GTGAGGCAGTCTCCAAGGTC
** * * * * * * * ** * **
3377819 AAAGCTAATAGGTAGACTTAGCGTAAGAAAGCCTTTAGGGTCAAAGCTGACAAACAAACTAAAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* ** * **
3377884 TAAGAAAGTATATAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * ** * * *
3377903 AAAGCCGACAGACAAACATCA-GGTGAGGTAGTCTCAAGGGTCAAAGTCGACAGGTAGACTTGAG
1 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3377967 AT-ATGGTAGTCTCC-AGTGTC
65 GTGA-GGCAGTCTCCAAG-GTC
* * * * * * * * * *
3377987 AAAGTCGATAGGCAGACTGAGGGTATGAAAGTCTCCAGGGTTAAAACGGATAAGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3378052 TGAGGTAGTCTCCATGGTC
66 TGAGGCAGTCTCCAAGGTC
** * * * *
3378071 AAAGTTGACAGGCAGACT-TGAGGT--G--AG--GC-AGGGTCAAAGTCGACAGGCAAACTTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* ** * * *
3378128 GGTAAGAAAGTCACTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3378149 AAAGCCGA-GGGTAGACT-TGAGGTAAGACAA-TCTCCAAGGTCAACGCCAAAAGGCAGAC-TGA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGA-AAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
** * *
3378210 GG-GCAAGAAAATCT-CTAGTGTC
64 GGTG--AGGCAGTCTCCAAG-GTC
* * * * * * * *
3378232 AAAGTCGACAGGAAGATTAAGGATAGGATAGTCT-TCGGGGTCAAAACCGACTA-GCAGACTTGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGAC-AGGCAGACTTGA
* * * *
3378295 GATGTGGCAGTCTCTAGGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * *
3378316 AAAGCTGATAGGCAGATTGAA-GGTAAGAAAATTTCTAGGGTCATAGCCGAC-GGTC-GTACTTG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGG-CAG-ACTTG
* *
3378378 AGGTGAGGTAGTCACCAAGGTC
63 AGGTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3378400 AAAGACGATAGACAAACTGAGGGTAACAAAGTCTCTAGGGTCAAACCCGATAGGCAGACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* * *
3378465 TGAGGCAGTCTCTAATGTT
66 TGAGGCAGTCTCCAAGGTC
* * * * * *
3378484 AAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCACCAGGGTCAAAGCCGACAAGCACACTTAAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3378549 TAAGGTAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * ** ** **
3378568 AACGCCGATAGGCAAACTTAGGGTAAGAAAGTCTGC-CGGGT-TGAG--GTTAAACAGACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * *
3378629 GAGAGGCCGTCTCTAGGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * * * * * *
3378649 TAAGCCGACCGGTAAACTGACGGTAAAAAAGTTTCAAGGGTCAAAGCCAACATGCAGACTTAAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
**
3378714 TGAGGTTGTCTCTACAA--TC
66 TGAGGCAGTCTC--CAAGGTC
* * * * * * * *
3378733 AAAGCCGATAAGCAGACTGAA-GGTAAAAAAGTCTTTAGGATCATAGTCGACAGGTAGACTTGAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * *
3378797 GTGACGTAGT-TGCCAGGGTC
65 GTGAGGCAGTCT-CCAAGGTC
** * * * * * * *
3378817 AAAGATGACTGGCAGACTGAGGGTAGGAAAGTTTCTAGGGTCAAAGCCGACAGGCAGGCATGGGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
** * *
3378882 TGAGGCAACCACCAATGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * * * * *
3378901 AAAGCTGATAGGCAGATTGAGGGTAGGAAAGTCGCCAGGGTCAAAACCAATAAGCACACTTAAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
3378966 TGAGGCAGTCTCCAAGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * * *
3378985 AAAGTCGATAGGCAAACTTAGGGTAAGAAGGTCTGC-AAGGTTAAAGCCGATAGGCAGGCTTAAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCT-CTAGGGTCAAAGCCGACAGGCAGACTTGAG
*
3379049 GAGAGGCAGTCTCCAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3379069 AAAGCTGATAGGCAGACTGAGGGTAAAAAAATCTCGAGGGTTAAAGTCGACAGGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
3379134 TGA-GCTTA-TCTCTACAA--TC
66 TGAGGC--AGTCTC--CAAGGTC
* ** * * * * *
3379153 AAAGCCGACAGGCAGACTGAGGGTGGGAAAGTCTCCAAGGTCAAAGCCAACAAGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3379218 TGAGGTAGTCTCTCGA-GTC
66 TGAGGCAGTCTC-CAAGGTC
* * * * * * *
3379237 AAA-CTTGATA-G--G-CTAAAGGTAAGAAAGTCTCCAAGGTCAAAGCCGATAGACAGACTTGAG
1 AAAGC-CGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3379297 GTAAGGTAGTCTCCAAGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * ** * *
3379317 AAAGCCGATAGGCACACTGAA-TGTAAGAAAGTCTCTAGGGTCATTGTCGATAGGCAGACTTGAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* * * * *
3379381 GTGAAGTAGTCTCGAGGGTT
65 GTGAGGCAGTCTCCAAGGTC
** * * * * * * *
3379401 AAAGATGACAAGCAGACTAAGGGTAGGAAAGTCTCCAAGGTCAAAGTCGATAGGCAGACTAGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
*
3379466 TGAGGCAGTCT-CTAGAGTC
66 TGAGGCAGTCTCCAAG-GTC
* * * * * *
3379485 AAAGCTGACAGGCAAACTAAGGGTAAAAAAGT-TTTCAAGATCAAAGCC-AGCAGGCAGAC-TGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGA-CAGGCAGACTTGA
**
3379547 GG-GCAAGAAAGTCT-CAAGGGTC
64 GGTG--AGGCAGTCTCCAA-GGTC
* * * * * * *
3379569 AAAGACGACAAGCAGAC-ATGAGGTTAGAGAGTCTCTAAGGTCAAAGTCGACAGGCAGA-TTGAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTG-A
* *** * ** * *
3379632 GGTAAAAAAATCTTTAGGGTT
64 GGTGAGGCAGTCTCCAAGGTC
* *** * ** * ** *
3379653 AAAGCCGATAATAAGACT-TGAGGTAAG-GTGCTCTCTAGGGTCAAAACTAACAGGCAGACTTAA
1 AAAGCCGACAGGCAGACTAAG-GGTAAGAAAG-TCTCTAGGGTCAAAGCCGACAGGCAGACTTGA
* *
3379716 GATGAGGCAGTCT-CTAGTGTC
64 GGTGAGGCAGTCTCCAAG-GTC
* * * * * * * *
3379737 AAAGTCGACATG-AGACTAAGGGTAGGAAAGTCT-TCGGGGTCAAAACTGATTA-GCAAACTTGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGA-CAGGCAGACTTGA
* * *
3379799 GATGTGGCAGCCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * * * *
3379820 AAAGCCAACAGGTAGACTGAA-GTTAAGAAAGTCTCCAGTGTCATAGCCGACAGACAGACTTAAG
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3379884 GTGAGGTAGT-TGCCAATGTC
65 GTGAGGCAGTCT-CCAAGGTC
** * * * ** * *
3379904 AAAGATGACAGGTAGACTGAGGGTAGGAAAACCTCTAAGGTCAAAGTCGACAGGCA-ACTTGAGG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
** * *
3379968 TGAACCAGTCTCTAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * ** * * * * * *
3379987 AAAGCCGACATGCAAAAAAATGGTAAGAAAATCTC-AGTGTCAAAGCCAACCGGCAGACTTGAGA
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
* *
3380051 TGAAGCAGTCTCCAGGGTC
66 TGAGGCAGTCTCCAAGGTC
* * * * * * * * *
3380070 AAAGCTGATAGGCAGACTAAGGGTAAGAAAGT-TTTCAAGGTCAAAGTCAATAAGCAAACTTGAG
1 AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCT-AGGGTCAAAGCCGACAGGCAGACTTGAG
* *
3380134 GTGAGGCAGTCTCTATGGTC
65 GTGAGGCAGTCTCCAAGGTC
* * * * * *
3380154 AAAGCAGACAAGCAGACTGAA-GGTAAGAAAGTCGCCAGGGTCAAAGCTGACAAGG-AAACTTGA
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGAC-AGGCAGACTTGA
**
3380217 GACGAGGCAGTCTCCAAGGTC
64 GGTGAGGCAGTCTCCAAGGTC
* * * * * *
3380238 AAAACTGACAGGCAAACTGAA-GGTAAGAAAGTCTCTAGGGGCAAAGCTGACAAGCAGACTT
1 AAAGCCGACAGGCAGACT-AAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTT
3380299 AAGTTGAAGT
Statistics
Matches: 17605, Mismatches: 5432, Indels: 2089
0.70 0.22 0.08
Matches are distributed among these distances:
77 211 0.01
78 402 0.02
79 10 0.00
80 80 0.00
81 133 0.01
82 364 0.02
83 1603 0.09
84 13226 0.75
85 1454 0.08
86 69 0.00
88 7 0.00
89 46 0.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.20
Consensus pattern (84 bp):
AAAGCCGACAGGCAGACTAAGGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGG
TGAGGCAGTCTCCAAGGTC
Found at i:3357294 original size:299 final size:299
Alignment explanation
Indices: 3356867--3357409 Score: 773
Period size: 299 Copynumber: 1.8 Consensus size: 299
3356857 ACTTGAGGTA
* * * * * * **
3356867 AGGTAGTCTCCAAGGTCAAAGCCGACAGGCACACTGAAGGTAAGAAAGTCTCTAGGGTCATTGTC
1 AGGTAGTCGCCAAGGTCAAAGACGACAGACAAACTGAAGGTAACAAAGTCTCTAAGGTCAAAGTC
* * * *
3356932 GGCAGGCAGACTTAAGGTGAGGTAGTCTCGAGGATCAAAGATGATAGGTAGACGGAAGGTAGGAA
66 GACAAGCAGACTTAAGGTGAGGTAGCCTCGAGGATCAAAGATGACAGGTAGACGGAAGGTAGGAA
* * *
3356997 AGTCTTTAGGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCAGTTTGTAGTGTCAAAGCCGACA
131 AGTCTCTAGGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCAGTCTCTAGTGTCAAAGCCGACA
* *
3357062 GGCAGACTGAGGGCAAGAAAGTCTT-AAGGGTCAAAGTCGACAAGCAGACATAAGGTTAGAGAGT
196 GGCAAACTGAGGGCAAGAAAGTCTTCAA-GGTCAAAGCCGACAAGCAGACATAAGGTTAGAGAGT
3357126 CTCTAGGGTCAAAGTCCGCATGTATCAATACATTGACGTG
260 CTCTAGGGTCAAAGTCCGCATGTATCAATACATTGACGTG
* * *
3357166 AGGTATTCGCCAAGGTCAAAGACGATAGACAAACTGAGGGTAACAAAGTCTCTAAGGTCAAAGTC
1 AGGTAGTCGCCAAGGTCAAAGACGACAGACAAACTGAAGGTAACAAAGTCTCTAAGGTCAAAGTC
* * * ** *
3357231 GATAAGCAGACTTGAGGTGAGGTAGCCTCGAGGGTCAAAGATGACAGGTAGATTGAGGGTAGGAA
66 GACAAGCAGACTTAAGGTGAGGTAGCCTCGAGGATCAAAGATGACAGGTAGACGGAAGGTAGGAA
* * **
3357296 AGTCTCTAGGGTCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCTAGTGTCAAAGCTGGTA
131 AGTCTCTAGGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCAGTCTCTAGTGTCAAAGCCGACA
* * *
3357361 GGCAAACTGAGGGTAAGAAAGTTTTCAAGGTCAAAGCCGACAGGCAGAC
196 GGCAAACTGAGGGCAAGAAAGTCTTCAAGGTCAAAGCCGACAAGCAGAC
3357410 TGAGGGCAAG
Statistics
Matches: 210, Mismatches: 33, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
299 208 0.99
300 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.31, T:0.20
Consensus pattern (299 bp):
AGGTAGTCGCCAAGGTCAAAGACGACAGACAAACTGAAGGTAACAAAGTCTCTAAGGTCAAAGTC
GACAAGCAGACTTAAGGTGAGGTAGCCTCGAGGATCAAAGATGACAGGTAGACGGAAGGTAGGAA
AGTCTCTAGGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCAGTCTCTAGTGTCAAAGCCGACA
GGCAAACTGAGGGCAAGAAAGTCTTCAAGGTCAAAGCCGACAAGCAGACATAAGGTTAGAGAGTC
TCTAGGGTCAAAGTCCGCATGTATCAATACATTGACGTG
Found at i:3357699 original size:125 final size:126
Alignment explanation
Indices: 3357464--3357703 Score: 297
Period size: 125 Copynumber: 1.9 Consensus size: 126
3357454 GAGGTTGGAG
* *
3357464 AGTCTCTTGGGTCAAAGTCGACAGGCAGACTTAAGGTAAAAAAGTCTTTAGGGTCAAAGCCAATA
1 AGTCTCTAGGGTCAAAATCGACAGGCAGACTTAAGGTAAAAAAGTCTTTAGGGTCAAAGCCAATA
* * ** * ** *
3357529 AGAAGACTTGAGGTGAGGTGTTCTTTAGGGTCAAAACTGATAGGCAGACTTAAGATGAGGT
66 AGAAGACTTGAGATGAGGAGTTCTCCAAGGTCAAAACCAACAGGCAGACTTAAGATGAGGT
* *
3357590 AGTCTCTAGTGTCAAAATCGACAGG-AGAC-TAAGGGTAGAAAAGTCTTTAGGGTCAAAGCCAAT
1 AGTCTCTAGGGTCAAAATCGACAGGCAGACTTAA-GGTAAAAAAGTCTTTAGGGTCAAAGCCAAT
* * * *
3357653 TAGCAGACTTGAGATGTGGCAG-TCTCCAAGGTCAAAGCCAACAGGCAGACT
65 AAGAAGACTTGAGATGAGG-AGTTCTCCAAGGTCAAAACCAACAGGCAGACT
3357704 GAAGGTAAGA
Statistics
Matches: 96, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
124 3 0.03
125 70 0.73
126 23 0.24
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.23
Consensus pattern (126 bp):
AGTCTCTAGGGTCAAAATCGACAGGCAGACTTAAGGTAAAAAAGTCTTTAGGGTCAAAGCCAATA
AGAAGACTTGAGATGAGGAGTTCTCCAAGGTCAAAACCAACAGGCAGACTTAAGATGAGGT
Found at i:3357728 original size:125 final size:126
Alignment explanation
Indices: 3357474--3357753 Score: 278
Period size: 125 Copynumber: 2.2 Consensus size: 126
3357464 AGTCTCTTGG
*
3357474 GTCAAAGTCGACAGGCAGACTTAAGGTAAAAAAGTCTTTAGGGTCAAAGCCAATAAGAAGACTTG
1 GTCAAAATCGACAGGCAGACTTAAGGTAAAAAAGTCTTTAGGGTCAAAGCCAATAAGAAGACTTG
* * ** * ** * * * ** * *
3357539 AGGTGAGGTGTTCTTTAGGGTCAAAACTGATAGGCAGACTTAAGATGAGGTAGTCTCTAGT
66 AGATGAGGAGTTCTCCAAGGTCAAAACCAACAGGCAGACTGAAGATAAGAAAGTCTCCAAT
* * *
3357600 GTCAAAATCGACAGG-AGAC-TAAGGGTAGAAAAGTCTTTAGGGTCAAAGCCAATTAGCAGACTT
1 GTCAAAATCGACAGGCAGACTTAA-GGTAAAAAAGTCTTTAGGGTCAAAGCCAATAAGAAGACTT
* * * *
3357663 GAGATGTGGCAG-TCTCCAAGGTCAAAGCCAACAGGCAGACTGAAGGTAAGAAAGTTTCCAAT
65 GAGATGAGG-AGTTCTCCAAGGTCAAAACCAACAGGCAGACTGAAGATAAGAAAGTCTCCAAT
* ** **
3357725 GTCATAGCCGACAGATAGACTTAAGGTAA
1 GTCAAAATCGACAGGCAGACTTAAGGTAA
3357754 GGTAGTTGCC
Statistics
Matches: 123, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
124 3 0.02
125 94 0.76
126 23 0.19
127 3 0.02
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.22
Consensus pattern (126 bp):
GTCAAAATCGACAGGCAGACTTAAGGTAAAAAAGTCTTTAGGGTCAAAGCCAATAAGAAGACTTG
AGATGAGGAGTTCTCCAAGGTCAAAACCAACAGGCAGACTGAAGATAAGAAAGTCTCCAAT
Found at i:3358763 original size:35 final size:36
Alignment explanation
Indices: 3358724--3358833 Score: 105
Period size: 35 Copynumber: 2.9 Consensus size: 36
3358714 CAGTCTCCAA
3358724 GGTCAAAGTCGACAAGCAGACTTGAGGTAAGGT-AG
1 GGTCAAAGTCGACAAGCAGACTTGAGGTAAGGTCAG
** *
3358759 GGTCAAAGTCGACTGGCAAACTTGAAGGTAAGAAAGTCACCAG
1 GGTCAAAGTCGACAAGCAGACTTG-AGGTAAG---GT---CAG
* *
3358802 GGTCAAAGCCGACAAGTAGACTTGAGGTAAGG
1 GGTCAAAGTCGACAAGCAGACTTGAGGTAAGG
3358834 CAATCTCCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
35 21 0.36
36 7 0.12
39 3 0.05
42 7 0.12
43 21 0.36
ACGTcount: A:0.35, C:0.16, G:0.32, T:0.16
Consensus pattern (36 bp):
GGTCAAAGTCGACAAGCAGACTTGAGGTAAGGTCAG
Found at i:3360920 original size:372 final size:371
Alignment explanation
Indices: 3360256--3361258 Score: 1165
Period size: 372 Copynumber: 2.7 Consensus size: 371
3360246 TGATGCTAGA
* * * *
3360256 CAGTCTCCAAGGTCAAAGCCGATAAGA-AGACTTAGGGTAAGAAAGCTT-TTAGGGTCAAAGCTG
1 CAGTCTCCAAGGTCATAGCCGA-AAGACAGACTTAGGGTAA-AAA-ATTCCTAGGGTCAAAGCCG
** ** * * * ** * **
3360319 ACAAGCAGACTAAAGGTAAGAAAGTATGTAGGGTTAAAGCCGATAGGCAAACTTAAGGTGAGGTA
63 ACAAGCAGACTTGAGGTAAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAAACCAAAGGTAAGAAA
* * * * *
3360384 GTCTCTAGGTTCAAAGTCGGCAGGTAGACTTGAGATAAGGCAGTGTTACATGTTAAAGTTGACAA
128 GTCTCTAGGGTCAAAGTCGACAGGCAGACTTGAGATAAGGCAGTGTTACATGTCAAAGTCGACAA
3360449 GCAGACTAAGGGTATGAAAGTCTCCAAGGTCAAAACCGACAAGCAGAATTGAGGTGAGGCAGTCT
193 GCAGACTAAGGGTATGAAAGTCTCCAAGGTCAAAACCGACAAGCAGAATTGAGGTGAGGCAGTCT
* * * *
3360514 CCAAGGTGAAAGTCGACAAGTAGACTTTAGGTGAGGCAGGGTCAAAGTCGACAGGAAAACTTGAA
258 CCAAGGTCAAAGTCAACAAGCAGACTTGAGGTGAGGCAGGGTCAAAGTCGACAGGAAAACTTGAA
* *
3360579 GGTAAGAAAGTCACCAGGGTCAAAGCTGACAGGTAGACTTGAGGTAAGG
323 GGTAAGAAAGTCACCAGGGTCAAAGCCGACAGGTAGACTTAAGGTAAGG
* *
3360628 CAGTCTCCAAGGTCATAGCCGACAGACAAACTTAGGGTAAAAAATTCGCTAGGGTCAAAGCCGAC
1 CAGTCTCCAAGGTCATAGCCGAAAGACAGACTTAGGGTAAAAAATTC-CTAGGGTCAAAGCCGAC
* * * *
3360693 AGGTAGACTTGAGGTAAGGTAGTCTCTAAGGTCAAAGCCGATAGGCAGACCAAAGGTAAGAAAGT
65 AAGCAGACTTGAGGTAAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAAACCAAAGGTAAGAAAGT
* * * * *
3360758 CTTTAGGGTCATAGTCGACAGGCAGACTTGAGATAAGGCAGTCTTTA-GTGTCAAAGTCGACAGG
130 CTCTAGGGTCAAAGTCGACAGGCAGACTTGAGATAAGGCAGT-GTTACATGTCAAAGTCGACAAG
* * *
3360822 TAGACTGAGGGTATGAAAGTCTCCAAGGTCAAAACTGACAAGCAGAATTGAGGTGAGGCAGTCTC
194 CAGACTAAGGGTATGAAAGTCTCCAAGGTCAAAACCGACAAGCAGAATTGAGGTGAGGCAGTCTC
* * *
3360887 CAAGGTCAAAGTCAATAAGCAGACTTGAGGTGAGGCAGGGTCAAAGTCGATAGGCAAACTTGAAG
259 CAAGGTCAAAGTCAACAAGCAGACTTGAGGTGAGGCAGGGTCAAAGTCGACAGGAAAACTTGAAG
* * *
3360952 GTAAGAAAGTCACTAGGGTCAAAGCCGACAGGTGGACTTAATGTAAGG
324 GTAAGAAAGTCACCAGGGTCAAAGCCGACAGGTAGACTTAAGGTAAGG
** * *
3361000 CAGTCTCCAAGGTCATAGCCGGTAGGCAGACTTAGGGTAAAAAATTCTCTAGGGTCAAAGCCGAG
1 CAGTCTCCAAGGTCATAGCCGAAAGACAGACTTAGGGTAAAAAATTC-CTAGGGTCAAAGCCGAC
* * * * * ** ** * *
3361065 AAGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCATAA-CTGACAAGTATGCTGAGGGTAATAAAG
65 AAGCAGACTTGAGGTAAGGTAGTCTCTAGGGTCA-AAGCCGATAGGCAAACCAAAGGTAAGAAAG
* * * * *
3361129 TCTCCAAGGTCAAAG-CTGACAGGCAGACTTGAGATAAGGCAGT-CTCCAAGGTCAAAG-CTGAC
129 TCTCTAGGGTCAAAGTC-GACAGGCAGACTTGAGATAAGGCAGTGTTAC-ATGTCAAAGTC-GAC
* * * * * * * * * * *
3361191 AAGCAGACTGAGTGTAGGAAAGTCTCTAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGCAGT
191 AAGCAGACTAAGGGTATGAAAGTCTCCAAGGTCAAAACCGACAAGCAGAATTGAGGTGAGGCAGT
3361256 CTC
256 CTC
3361259 TAGAGTCAAA
Statistics
Matches: 534, Mismatches: 88, Indels: 18
0.83 0.14 0.03
Matches are distributed among these distances:
370 3 0.01
371 8 0.01
372 518 0.97
373 5 0.01
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (371 bp):
CAGTCTCCAAGGTCATAGCCGAAAGACAGACTTAGGGTAAAAAATTCCTAGGGTCAAAGCCGACA
AGCAGACTTGAGGTAAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAAACCAAAGGTAAGAAAGTC
TCTAGGGTCAAAGTCGACAGGCAGACTTGAGATAAGGCAGTGTTACATGTCAAAGTCGACAAGCA
GACTAAGGGTATGAAAGTCTCCAAGGTCAAAACCGACAAGCAGAATTGAGGTGAGGCAGTCTCCA
AGGTCAAAGTCAACAAGCAGACTTGAGGTGAGGCAGGGTCAAAGTCGACAGGAAAACTTGAAGGT
AAGAAAGTCACCAGGGTCAAAGCCGACAGGTAGACTTAAGGTAAGG
Found at i:3360974 original size:288 final size:287
Alignment explanation
Indices: 3360654--3361185 Score: 710
Period size: 288 Copynumber: 1.9 Consensus size: 287
3360644 AGCCGACAGA
* * * * *
3360654 CAAACTTAGGGTAAAAAATTCGCTAGGGTCAAAGCCGACAGGTAGACTTGAGGTAAGGTAGTCTC
1 CAAACTTAAGGTAAAAAAGTCACTAGGGTCAAAGCCGACAGGTAGACTTAAGGTAAGGCAGTCTC
* * * * * *
3360719 TAAGGTCAAAGCCGATAGGCAGACCAAAGGTAAGAAAGTCTTTAGGGTCATAGTCGACAGGCAGA
66 CAAGGTCAAAGCCGATAGGCAGACCAAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAAGCAGA
* * * *
3360784 CTTGAGATAAGGCAGTCTTTAGTGTCA-AAGTCGACAGGTA-GACTGAGGGT-ATGAAAGTCTCC
131 CTTGAGATAAGGCAGTCTCTAGGGTCATAACT-GACAAGTATG-CTGAGGGTAAT-AAAGTCTCC
* *
3360846 AAGGTCAAAACTGACAAGCAGAATTGAGGTGAGGCAGTCTCCAAGGTCAAAGTCAATAAGCAGAC
193 AAGGTCAAAACTGACAAGCAGAATTGAGATAAGGCAGTCTCCAAGGTCAAAGTCAATAAGCAGAC
3360911 TTGAGGTGAGGCAGGGTCAAAGTCGATAGG
258 TTGAGGTGAGGCAGGGTCAAAGTCGATAGG
* * *
3360941 CAAACTTGAAGGTAAGAAAGTCACTAGGGTCAAAGCCGACAGGTGGACTTAATGTAAGGCAGTCT
1 CAAACTT-AAGGTAAAAAAGTCACTAGGGTCAAAGCCGACAGGTAGACTTAAGGTAAGGCAGTCT
* * ** * * *
3361006 CCAAGGTCATAGCCGGTAGGCAGACTTAGGGTAAAAAATTCTCTAGGGTCAAAGCCGAGAAGCAG
65 CCAAGGTCAAAGCCGATAGGCAGACCAAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAAGCAG
* * *
3361071 ACTTGAGGTGAGGTAGTCTCTAGGGTCATAACTGACAAGTATGCTGAGGGTAATAAAGTCTCCAA
130 ACTTGAGATAAGGCAGTCTCTAGGGTCATAACTGACAAGTATGCTGAGGGTAATAAAGTCTCCAA
* * *
3361136 GGTCAAAGCTGACAGGCAGACTTGAGATAAGGCAGTCTCCAAGGTCAAAG
195 GGTCAAAACTGACAAGCAGAATTGAGATAAGGCAGTCTCCAAGGTCAAAG
3361186 CTGACAAGCA
Statistics
Matches: 208, Mismatches: 33, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
287 7 0.03
288 195 0.94
289 6 0.03
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (287 bp):
CAAACTTAAGGTAAAAAAGTCACTAGGGTCAAAGCCGACAGGTAGACTTAAGGTAAGGCAGTCTC
CAAGGTCAAAGCCGATAGGCAGACCAAAGGTAAAAAAGTCTCTAGGGTCAAAGCCGACAAGCAGA
CTTGAGATAAGGCAGTCTCTAGGGTCATAACTGACAAGTATGCTGAGGGTAATAAAGTCTCCAAG
GTCAAAACTGACAAGCAGAATTGAGATAAGGCAGTCTCCAAGGTCAAAGTCAATAAGCAGACTTG
AGGTGAGGCAGGGTCAAAGTCGATAGG
Found at i:3361977 original size:666 final size:666
Alignment explanation
Indices: 3360755--3361955 Score: 1675
Period size: 666 Copynumber: 1.8 Consensus size: 666
3360745 AAGGTAAGAA
* * * * * * * *
3360755 AGTCTTTAGGGTCATAGTCGACAGGCAGACTTGAGATAAGGCAGTCTTTAGTGTCAAAGTCGACA
1 AGTCTCTAGGGACAAAGCCGACAAGCAGACTTGAGATAAGGCAGTCTTCAATGTCAAAGCCGACA
* *
3360820 GGTAGACTGAGGGTATGAAAGTCTCCAAGGTCAAAACTGACAAGCAGAATTGAGGTGAGGCAGTC
66 GGTAGACTGAGGATACGAAAGTCTCCAAGGTCAAAACTGACAAGCAGAATTGAGGTGAGGCAGTC
* * *
3360885 TCCAAGGTCAAAGTCAATAAGCAGACTTGAGGTGAGGCAGGGTCAAAGTCGATAGGCAAACTTGA
131 TCCAAGGTCAAAGTCAACAAGCAGACTTGAGGTGAGGCAGGGTCAAAGCCGACAGGCAAACTTGA
* *
3360950 AGGTAAGAAAGTCACTAGGGTCAAAGCCGACAGGTGGACTTAATGTAAGGCAGTCTCCAAGGTCA
196 AGGTAAGAAAGTCACCAGGGTCAAAGCCGACAGGCGGACTTAATGTAAGGCAGTCTCCAAGGTCA
* * * * * *
3361015 TAGCCGGTAGGCAGACTTAGGGTAAAAAATTCTCTAGGGTCAAAGCCGAGAAGCAGACTTGAGGT
261 AAACCGCTAGGCAAACTTAGGGTAAAAAATTCTCCAAGGTCAAAGCCGAGAAGCAGACTTGAGGT
* * * * *
3361080 GAGGTAGTCTCTAGGGTCATAACTGACAAGTATGCTGAGGGTAATAAAGTCTCCAAGGTCAAAGC
326 GAGGCAGTCTCTAGGATCATAACTGACAAGCAAGCTGAGGGTAATAAAGTCACCAAGGTCAAAGC
* *
3361145 TGACAGGCAGACTTGAGATAAGGCAGTCTCCAAGGTCAAAGCTGACAAGCAGACTGAGTGTAGGA
391 TGACAGGCAGACTTGAGATAAGGCAGTCTCCAAGGTCAAAGCTGACAAGCAGACTGAGGGTAGCA
* *
3361210 AAGTCTCTAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGCAGTCTCTAGAGTCAAAGCTGAC
456 AAGTCTCTAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGAAGTCTCAAGAGTCAAAGCTGAC
* *
3361275 AGGCATATTAAGGGTAAAAATGTCTCCCAAGTCAAAGTTGATAGGCAGACTAAAGGTTCAATAGT
521 AGGCAGACTAAGGGTAAAAATGTCTCCCAAGTCAAAGTTGATAGGCAGACTAAAGGTTCAATAGT
3361340 CTACACGGTAAAAGTCGACTGGTTGACTGAAGGTAAGAAAGTCTCTATGGTCAAAGCTGACAAGC
586 CTACACGGTAAAAGTCGACTGGTTGACTGAAGGTAAGAAAGTCTCTATGGTCAAAGCTGACAAGC
3361405 AGACTTGAGGTGAGGT
651 AGACTTGAGGTGAGGT
*
3361421 AGTCTCTAGGGACAAAGCCGACAAGCAGACTTGAGATAAGGCAGT-TTCCAATGTCAAAGCCTAC
1 AGTCTCTAGGGACAAAGCCGACAAGCAGACTTGAGATAAGGCAGTCTT-CAATGTCAAAGCCGAC
* * *
3361485 AGGTAGACTGAGGATACGAAAGTCTTCAAGGTCAAAACTGACAGGCAGACTTGAGGTGAGGCAGT
65 AGGTAGACTGAGGATACGAAAGTCTCCAAGGTCAAAACTGACAAGCAGAATTGAGGTGAGGCAGT
* * * * *
3361550 CTCTAAGGTCAAAGTCGACAGGTAGACTTGAGGTGAGGCAGGGTCAAAGCCGACAGGCAAATTTG
130 CTCCAAGGTCAAAGTCAACAAGCAGACTTGAGGTGAGGCAGGGTCAAAGCCGACAGGCAAACTTG
*
3361615 AAGGTAAGAAAGTCACCAGGGTCAAAGCCGACAGGCGGACTTGAGA-G-GAGGCAGTCTCCAAGG
195 AAGGTAAGAAAGTCACCAGGGTCAAAGCCGACAGGCGGACTT-A-ATGTAAGGCAGTCTCCAAGG
* * *
3361678 TCAAAATCGACTA-GCAAACTTAGGGTAAAAAATTCTCCAAGGTCAAAGCTGACG-GGCAGACTT
258 TCAAAACCG-CTAGGCAAACTTAGGGTAAAAAATTCTCCAAGGTCAAAGCCGA-GAAGCAGACTT
* *
3361741 GAGGTGAGGCAGTCTCTAGGATTA-AAGCTGATC-AGCAAGCTGAGGGTAATAAAGTCACCATGG
321 GAGGTGAGGCAGTCTCTAGGATCATAA-CTGA-CAAGCAAGCTGAGGGTAATAAAGTCACCAAGG
* * * * * * * * *
3361804 TTAAAGCTGATAGGTAGATTTGAGATGAGGCAGTCAT-TAGGGTTAAAG-TCGACAGGCAGACTG
384 TCAAAGCTGACAGGCAGACTTGAGATAAGGCAGTC-TCCAAGGTCAAAGCT-GACAAGCAGACTG
* * * * *
3361867 AGGGTAGCAAAGTCTCTAGGGTCAAAGCCAACAGGTAGACTTGAGGTTAGATAATTTTCAAG-GT
447 AGGGTAGCAAAGTCTCTAGGGTCAAAGCCAACAGGTAGACTTGAGATGAG-GAAGTCTCAAGAGT
* *
3361931 TAAAGCTGACAGGTAGACTAAGGGT
511 CAAAGCTGACAGGCAGACTAAGGGT
3361956 TAGAAAGTCT
Statistics
Matches: 462, Mismatches: 63, Indels: 20
0.85 0.12 0.04
Matches are distributed among these distances:
665 5 0.01
666 443 0.96
667 13 0.03
668 1 0.00
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.20
Consensus pattern (666 bp):
AGTCTCTAGGGACAAAGCCGACAAGCAGACTTGAGATAAGGCAGTCTTCAATGTCAAAGCCGACA
GGTAGACTGAGGATACGAAAGTCTCCAAGGTCAAAACTGACAAGCAGAATTGAGGTGAGGCAGTC
TCCAAGGTCAAAGTCAACAAGCAGACTTGAGGTGAGGCAGGGTCAAAGCCGACAGGCAAACTTGA
AGGTAAGAAAGTCACCAGGGTCAAAGCCGACAGGCGGACTTAATGTAAGGCAGTCTCCAAGGTCA
AAACCGCTAGGCAAACTTAGGGTAAAAAATTCTCCAAGGTCAAAGCCGAGAAGCAGACTTGAGGT
GAGGCAGTCTCTAGGATCATAACTGACAAGCAAGCTGAGGGTAATAAAGTCACCAAGGTCAAAGC
TGACAGGCAGACTTGAGATAAGGCAGTCTCCAAGGTCAAAGCTGACAAGCAGACTGAGGGTAGCA
AAGTCTCTAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGAAGTCTCAAGAGTCAAAGCTGAC
AGGCAGACTAAGGGTAAAAATGTCTCCCAAGTCAAAGTTGATAGGCAGACTAAAGGTTCAATAGT
CTACACGGTAAAAGTCGACTGGTTGACTGAAGGTAAGAAAGTCTCTATGGTCAAAGCTGACAAGC
AGACTTGAGGTGAGGT
Found at i:3367156 original size:419 final size:419
Alignment explanation
Indices: 3366392--3367156 Score: 872
Period size: 419 Copynumber: 1.8 Consensus size: 419
3366382 GACAGGCAGG
* * * * *
3366392 CTAAGGGTAATAAAGTCTCCAGGGTCAAAGCTTACAGGCAGACTTGAGATGAGGTAGTCTCCAAG
1 CTAAGGATAAAAAAGTCTCAAGGGTCAAAGCTGACAGGCAGACTTGAGATGAGATAGTCTCCAAG
* * * * * *
3366457 GTCAAAGCTGACAGGAAGAGTGAGGGTAGGAAAGTCTCTAGTGTCAAAGCCAACAGGCAGACTTA
66 ATCAAAGCTGACAGAAAGACTGAGGGTAGGAAAGTCTCAAGTGTCAAAGCCAAAAAGCAGACTTA
* * * * * * * * * **
3366522 AGGTTAGAGAGTCTTTAGGGTCAAAGCTGATAGATAGACTAAAGGTTAGAAAGTCTCTATGGTCA
131 AGATGAGACAGTCTCTAAGGTCAAAGCTGACAGACAGACTAAAGGTAAGAAAGTCTCAAAAGTCA
* ** * **
3366587 AAGTCGATAAACAGACTTGAGGTGGGGTAGTCTCCAAGGTCAATGTTGACAAGCAAACTTGAAGT
196 AAGTCGACAAACAGACTTGAGGTAAGGTAGTCTCCAAGGTCAAAGCCGACAAGCAAACTTGAAGT
* * * *
3366652 AATAAAGTCACCAAGGTCAAAGCCGACAGTCACACTTCAGGGGAAGCAGTCTCCAAGGTCAAAGT
261 AATAAAGTCACCAAGGTCAAAGCCAACAGGCACACTTAAGGGGAAGCAGTCTCCAAGGTCAAAGC
** ***
3366717 CGACAGTTAGATTTAGGATAAAAGGCTTTCAGGGTCAAAATCGACAGGCAGACTTCAGGTCAAGC
326 CGACACATAGACCAAGGATAAAAGGCTTTCAGGGTCAAAATCGACAGGCAGACTTCAGGTCAAGC
3366782 AATTTTCAGGGTCAAAGGCATCACGCGGA
391 AATTTTCAGGGTCAAAGGCATCACGCGGA
* * * * *
3366811 CTAAGGATAAAAAAGTCTCAAGGGTTAAAGCTGATAGGTAGACTTGAGATGAGATAGTCTCTATG
1 CTAAGGATAAAAAAGTCTCAAGGGTCAAAGCTGACAGGCAGACTTGAGATGAGATAGTCTCCAAG
* *
3366876 ATCAAAGCTGATA-AACAGACTGAGGGTAGGAAAGTCTCCAAG-GTCGAAGCCAAAAAGCAGACT
66 ATCAAAGCTGACAGAA-AGACTGAGGGTAGGAAAGTCT-CAAGTGTCAAAGCCAAAAAGCAGACT
* * * *
3366939 TTAGATGAGACAGTCTCTAAGGTCAAAGCTGACAGGCAGACTGAGGGTAAGAAAGTCTCAAAAGT
129 TAAGATGAGACAGTCTCTAAGGTCAAAGCTGACAGACAGACTAAAGGTAAGAAAGTCTCAAAAGT
* *** * * *
3367004 TAAAGTCGACAGGTAGACTTGAGGTAAGGTAGTTTCCAAGGTCAAAGCCGACAAGTAGACTT-AG
194 CAAAGTCGACAAACAGACTTGAGGTAAGGTAGTCTCCAAGGTCAAAGCCGACAAGCAAACTTGA-
* ** * * * * * * *
3367068 GGTAA-AAAGGTCTTCAGGGTCAAAGCCAAGAGGCAGACTTAAGGTGAGGTAGTTTCCAAGGTCA
258 AGTAATAAA-GTCACCAAGGTCAAAGCCAACAGGCACACTTAAGGGGAAGCAGTCTCCAAGGTCA
*
3367132 AAGCCGTCACATAGACCAAGGATAA
322 AAGCCGACACATAGACCAAGGATAA
3367157 GAATGTCTCA
Statistics
Matches: 276, Mismatches: 66, Indels: 8
0.79 0.19 0.02
Matches are distributed among these distances:
418 5 0.02
419 268 0.97
420 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.21
Consensus pattern (419 bp):
CTAAGGATAAAAAAGTCTCAAGGGTCAAAGCTGACAGGCAGACTTGAGATGAGATAGTCTCCAAG
ATCAAAGCTGACAGAAAGACTGAGGGTAGGAAAGTCTCAAGTGTCAAAGCCAAAAAGCAGACTTA
AGATGAGACAGTCTCTAAGGTCAAAGCTGACAGACAGACTAAAGGTAAGAAAGTCTCAAAAGTCA
AAGTCGACAAACAGACTTGAGGTAAGGTAGTCTCCAAGGTCAAAGCCGACAAGCAAACTTGAAGT
AATAAAGTCACCAAGGTCAAAGCCAACAGGCACACTTAAGGGGAAGCAGTCTCCAAGGTCAAAGC
CGACACATAGACCAAGGATAAAAGGCTTTCAGGGTCAAAATCGACAGGCAGACTTCAGGTCAAGC
AATTTTCAGGGTCAAAGGCATCACGCGGA
Found at i:3369646 original size:85 final size:84
Alignment explanation
Indices: 3369540--3369694 Score: 211
Period size: 85 Copynumber: 1.8 Consensus size: 84
3369530 AGTAAACTTG
* * * * *
3369540 AGGTGAGGTAGTCTTCGAGGTCAATGCCGACAAGGAAACTTGAAGGTAAGAAAGTCACCAAGGTC
1 AGGTGAGGCAGTATTCAAGGTCAAAGCCAACAAGGAAACTT-AAGGTAAGAAAGTCACCAAGGTC
3369605 AAAGCCGATAGTCACAGTTA
65 AAAGCCGATAGTCACAGTTA
* * * * *
3369625 AGGTGAGGCAGTATTCAAGGTCAAAGCCAACAAGTAGACTTAGGGTAAGAAGGTCTCCAAGGTCA
1 AGGTGAGGCAGTATTCAAGGTCAAAGCCAACAAGGAAACTTAAGGTAAGAAAGTCACCAAGGTCA
3369690 AAGCC
66 AAGCC
3369695 AAGAGGCAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
84 26 0.43
85 34 0.57
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (84 bp):
AGGTGAGGCAGTATTCAAGGTCAAAGCCAACAAGGAAACTTAAGGTAAGAAAGTCACCAAGGTCA
AAGCCGATAGTCACAGTTA
Found at i:3370312 original size:295 final size:294
Alignment explanation
Indices: 3369872--3370421 Score: 728
Period size: 295 Copynumber: 1.9 Consensus size: 294
3369862 TAAAAAGCAA
* * * * *
3369872 ACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCTGATAGGCAGACTAAGGGTAAGAAAGTCTCAAA
1 ACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAAACTAAGGGTAAGAAAGTCACAAA
* * * * * * **
3369937 GGTCAAAGTCGATAGGTAGACTTGAGGTAAGGTAGTTTCCAAGGTCAAAGGCGACAAGTGGACTT
66 GGTCAAAGTCGATAGGTACACGTGAGGTAAGGTAGTCTCAAAGGTCAAAGCCAACAAGAAGACTT
* * *
3370002 AGGGTAAGAAGGTCTCTAGGGTCAAAGGCAAGAGGCAGACTTGAGGTGAGGTAGTTTCCAAGGTC
131 AGGGTAAGAAGGTCTCTAAGGTCAAAGGCAAGAGGCAAACTTGAGGTGAGGCAGTTTCCAAGGTC
** * *
3370067 AAAGCCGTCACGTAGACTAAGGATAAGAATGTCTCAAGGGTCAAAGCTGACAGGTAGACTAAGGG
196 AAAGCCGTCACACAGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGCTGACAGGCAGACTAAGGG
3370132 TTAGAAAGTCCCTAGGGTCAATGTTGATAGGCAG
261 TTAGAAAGTCCCTAGGGTCAATGTTGATAGGCAG
* *
3370166 ACTTGAGGTGAGGTAGTCTCCAAGGT-AAATGCCGACAAGCAAACTTGAA-GGTAAGAAAGTCAC
1 ACTTGAGATGAGGCAGTCTCCAAGGTCAAA-GCCGACAAGCAAAC-T-AAGGGTAAGAAAGTCAC
* * *
3370229 CAAGGTCAAAGTCGATA-GTCACACGTGAGGTGAGGTAGTCTCAAAGGTCGAAGCCAACAAGAAG
63 AAAGGTCAAAGTCGATAGGT-ACACGTGAGGTAAGGTAGTCTCAAAGGTCAAAGCCAACAAGAAG
* * * * * * *
3370293 ACTTCGGGTAAGAAGGTCTCTAAGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCCGTTTCTAG
127 ACTTAGGGTAAGAAGGTCTCTAAGGTCAAAGGCAAGAGGCAAACTTGAGGTGAGGCAGTTTCCAA
* * *
3370358 GGTCAAAGCCGTCATACAGACTAAGGATAAGAAAGTCTCCAGGGTCAAAGTTGACAGGCAGACT
192 GGTCAAAGCCGTCACACAGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGCTGACAGGCAGACT
3370422 TGATATGAGG
Statistics
Matches: 217, Mismatches: 35, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
293 3 0.01
294 36 0.17
295 176 0.81
296 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (294 bp):
ACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAAGCAAACTAAGGGTAAGAAAGTCACAAA
GGTCAAAGTCGATAGGTACACGTGAGGTAAGGTAGTCTCAAAGGTCAAAGCCAACAAGAAGACTT
AGGGTAAGAAGGTCTCTAAGGTCAAAGGCAAGAGGCAAACTTGAGGTGAGGCAGTTTCCAAGGTC
AAAGCCGTCACACAGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGCTGACAGGCAGACTAAGGG
TTAGAAAGTCCCTAGGGTCAATGTTGATAGGCAG
Found at i:3370532 original size:631 final size:630
Alignment explanation
Indices: 3369483--3370658 Score: 1553
Period size: 631 Copynumber: 1.9 Consensus size: 630
3369473 GGGTTAACGT
* * * *
3369483 TGACAGGTAGATTGAGGGTTAGAAAGTCTCTAGGGTCAAAGCCAGCAAGTAAACTTGAGGTGAGG
1 TGACAGGTAGACTAAGGGTTAGAAAGTCCCTAGGGTCAAAGCCAGCAAGCAAACTTGAGGTGAGG
* * * *
3369548 TAGTCTTCGAGGTCAATGCCGACAAGGAAACTTGAAGGTAAGAAAGTCACCAAGGTCAAAGCCGA
66 TAGTCTCCAAGGTAAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCACCAAGGTCAAAGCCGA
* *
3369613 TAGTCACAGTTAAGGTGAGGCAGTATTCAAGGTCAAAGCCAACAAGTAGACTTAGGGTAAGAAGG
131 TAGTCACAGTTAAGGTGAGGCAGTACTCAAGGTCAAAGCCAACAAGAAGACTTAGGGTAAGAAGG
* *
3369678 TCTCCAAGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGGTAGTTTCGAGGGTCAAAGCCGTCACG
196 TCTCCAAGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGGCAGTTTCGAGGGTCAAAGCCGTCACA
* * *
3369743 TAGACTAAGGATGAGAAAGTCTCAAGGGTCAAAGTCGACAAGTAGACTTGAGATGAGGTAGTCCT
261 CAGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGTCGACAAGCAGACTTGAGATGAGGTAGTCCT
* * * *
3369808 TATGATCAAAGTTGAAAGACAAACTGAGGGTAGGAAAGTCTCTAAGGTAAAACCTAAAAAGCAAA
326 TACGATCAAAGTTGAAAGACAAACTGAAGGTAGGAAAGTCCCCAAGGTAAAACCTAAAAAGCAAA
* ** * *
3369873 CTTGAGATGAGGCAGTCTCCAAGGTCAAAG-CTGA-TAGGCAGACTAAGGGTAAGAAAGTCTCAA
391 CTTAAGATGAGGCAACCTCCAAGGTCAAAGTC-GACCA-GCACACT-AGGGTAAGAAAGTCT-AA
* * * * * * * *
3369936 A-GGTCAAAGTCGATAGGTAGACTTGAGGTAAGGTAGTTTCCAAGGTCAAAGGCGACAAGTGGAC
452 AGGGTCAAAGTCAACAGGCAGACTTAAGGTAAGATAGTCTACAAGGTCAAAGGCGACAAGTAGAC
* * **
3370000 TTAGGGTAAGAAGGTCTCTAGGGTCAAAGGCAAGAGGCAGACTTGAGGTGAGGTAGTTTCCAAGG
517 TGAAGGTAAGAAAATCTCTAGGGTCAAAGGCAAGAGGCAGACTTGAGGTGAGGTAGTTTCCAAGG
3370065 TCAAAGCCGTCACGTAGACTAAGGATAAGAATGTCTCAAGGGTCAAAGC
582 TCAAAGCCGTCACGTAGACTAAGGATAAGAATGTCTCAAGGGTCAAAGC
* ** *
3370114 TGACAGGTAGACTAAGGGTTAGAAAGTCCCTAGGGTCAATG-TTG-ATAGGCAGACTTGAGGTGA
1 TGACAGGTAGACTAAGGGTTAGAAAGTCCCTAGGGTCAAAGCCAGCA-A-GCAAACTTGAGGTGA
*
3370177 GGTAGTCTCCAAGGTAAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCACCAAGGTCAAAGTC
64 GGTAGTCTCCAAGGTAAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCACCAAGGTCAAAGCC
* * * *
3370242 GATAGTCACACG-TGAGGTGAGGTAGT-CTCAAAGGTCGAAGCCAACAAGAAGACTTCGGGTAAG
129 GATAGTCACA-GTTAAGGTGAGGCAGTACTC-AAGGTCAAAGCCAACAAGAAGACTTAGGGTAAG
* * * * * *
3370305 AAGGTCTCTAAGGTCAAAGTCGATAGGCAAACTTGAGGTGAGGCCGTTTCTAGGGTCAAAGCCGT
192 AAGGTCTCCAAGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGGCAGTTTCGAGGGTCAAAGCCGT
* * * * *
3370370 CATACAGACTAAGGATAAGAAAGTCTCCAGGGTCAAAGTTGACAGGCAGACTTGATATGAGGTAG
257 CACACAGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGTCGACAAGCAGACTTGAGATGAGGTAG
* * *
3370435 T-CTCTACGATCAAAGTTGATAGACAAACTGAAGGTAGGAAAGTCCCCAAGGTCTAAGCC-AAAA
322 TCCT-TACGATCAAAGTTGAAAGACAAACTGAAGGTAGGAAAGTCCCCAAGGT-AAAACCTAAAA
* * ** *
3370498 AGTAGACTTAAGAT-ACGGCAACCTTGAGGGTCAAAGTCGACCAGCACACTAGGGTAAGAAAGTC
385 AGCAAACTTAAGATGA-GGCAACCTCCAAGGTCAAAGTCGACCAGCACACTAGGGTAAGAAAGTC
* * * * *
3370562 TAAAGGGTTAAAGTCAACAGGCAGACTTAAGGTTAGATAGTCTACAGGGTCAAAGTCGACAGGTA
449 TAAAGGGTCAAAGTCAACAGGCAGACTTAAGGTAAGATAGTCTACAAGGTCAAAGGCGACAAGTA
*
3370627 GACTGAAGGTAAGAAAATCTCTATGGTCAAAG
514 GACTGAAGGTAAGAAAATCTCTAGGGTCAAAG
3370659 CTGACAAGCA
Statistics
Matches: 465, Mismatches: 70, Indels: 21
0.84 0.13 0.04
Matches are distributed among these distances:
629 4 0.01
630 96 0.21
631 358 0.77
632 7 0.02
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (630 bp):
TGACAGGTAGACTAAGGGTTAGAAAGTCCCTAGGGTCAAAGCCAGCAAGCAAACTTGAGGTGAGG
TAGTCTCCAAGGTAAATGCCGACAAGCAAACTTGAAGGTAAGAAAGTCACCAAGGTCAAAGCCGA
TAGTCACAGTTAAGGTGAGGCAGTACTCAAGGTCAAAGCCAACAAGAAGACTTAGGGTAAGAAGG
TCTCCAAGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGGCAGTTTCGAGGGTCAAAGCCGTCACA
CAGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGTCGACAAGCAGACTTGAGATGAGGTAGTCCT
TACGATCAAAGTTGAAAGACAAACTGAAGGTAGGAAAGTCCCCAAGGTAAAACCTAAAAAGCAAA
CTTAAGATGAGGCAACCTCCAAGGTCAAAGTCGACCAGCACACTAGGGTAAGAAAGTCTAAAGGG
TCAAAGTCAACAGGCAGACTTAAGGTAAGATAGTCTACAAGGTCAAAGGCGACAAGTAGACTGAA
GGTAAGAAAATCTCTAGGGTCAAAGGCAAGAGGCAGACTTGAGGTGAGGTAGTTTCCAAGGTCAA
AGCCGTCACGTAGACTAAGGATAAGAATGTCTCAAGGGTCAAAGC
Found at i:3370915 original size:43 final size:42
Alignment explanation
Indices: 3370854--3370945 Score: 112
Period size: 43 Copynumber: 2.2 Consensus size: 42
3370844 GGTGAGGCAG
*
3370854 GGTCAAAGCCGAAAGGCAAATTTGAAGGTAAGAAAGTCACCAA
1 GGTCAAAGCCGAAAGGCAAACTTG-AGGTAAGAAAGTCACCAA
* * * ** *
3370897 GGTCATAGCCGATAGGCAAACTTGAGGTGAGGTAGTCTCCAA
1 GGTCAAAGCCGAAAGGCAAACTTGAGGTAAGAAAGTCACCAA
3370939 GGTCAAA
1 GGTCAAA
3370946 ATTGATAGGT
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
42 20 0.49
43 21 0.51
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.17
Consensus pattern (42 bp):
GGTCAAAGCCGAAAGGCAAACTTGAGGTAAGAAAGTCACCAA
Found at i:3371375 original size:85 final size:83
Alignment explanation
Indices: 3371220--3371437 Score: 240
Period size: 85 Copynumber: 2.6 Consensus size: 83
3371210 ACTAAGGGTT
* *
3371220 AGAAAGTCTCTAGGGTCAAAGCTAACAAGCAAACTTGAGGTGAGGTAGTCTCCAAGGTCAATGCC
1 AGAAAGTCTCCAGGGTCAAAGCTAAC-AGCAAACTTGAGGTGAGGTAGTCTCCAAGATCAATGCC
*
3371285 GACAAGGAAACTTGAAGGTA
65 AACAAGGAAACTT-AAGGTA
* * * * **
3371305 AGAAAGTCACCAGAGTCAAAGCTGACAGTCACACTTGAGGTGAGGTAGTCTTTAAGATCGAA-GC
1 AGAAAGTCTCCAGGGTCAAAGCTAACAG-CAAACTTGAGGTGAGGTAGTCTCCAAGATC-AATGC
* * *
3371369 CAACAAGTAGACTTAGGGTA
64 CAACAAGGAAACTTAAGGTA
* * * *
3371389 AGAAGGTCTCCAGGGTCAAAGCCAAGAGGCAAACTTGAGGTGAGATAGT
1 AGAAAGTCTCCAGGGTCAAAGCTAACA-GCAAACTTGAGGTGAGGTAGT
3371438 TTTCTGTGTT
Statistics
Matches: 110, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
84 46 0.42
85 62 0.56
86 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (83 bp):
AGAAAGTCTCCAGGGTCAAAGCTAACAGCAAACTTGAGGTGAGGTAGTCTCCAAGATCAATGCCA
ACAAGGAAACTTAAGGTA
Found at i:3373687 original size:85 final size:83
Alignment explanation
Indices: 3373532--3373741 Score: 210
Period size: 85 Copynumber: 2.5 Consensus size: 83
3373522 ACTAAGGGTT
* * ** *
3373532 AGAAAGTCCCTAGGGTCAAAGTTGACATGCAGACTTGAGGTGAGGCAGCCTCCAAGGTCAATGCC
1 AGAAAGTCCC-AGGGTCAAAGTCGACATGCAGACGTGAGGTGAGAAAGCCTCCAAAGTCAATGCC
*
3373597 GACAAGCAAACTTGAAGGTA
65 AACAAGCAAACTT-AAGGTA
*
3373617 AGAAAGTCACCAGGGTCAAAGTCGACA-GTCACG-CGTGAGGTGAGAAAGTCTCCAAAGTCGAA-
1 AGAAAGTC-CCAGGGTCAAAGTCGACATG-CA-GACGTGAGGTGAGAAAGCCTCCAAAGTC-AAT
* *
3373679 GCCAACAAGTAAACTTAGGGTA
62 GCCAACAAGCAAACTTAAGGTA
* * * * *
3373701 AGAAGGTCTCTAGGGTCAAAGTCGATAGGCAGACTTGAGGT
1 AGAAAGTC-CCAGGGTCAAAGTCGACATGCAGACGTGAGGT
3373742 AAGGCCGTTT
Statistics
Matches: 105, Mismatches: 14, Indels: 13
0.80 0.11 0.10
Matches are distributed among these distances:
83 1 0.01
84 38 0.36
85 61 0.58
86 5 0.05
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.18
Consensus pattern (83 bp):
AGAAAGTCCCAGGGTCAAAGTCGACATGCAGACGTGAGGTGAGAAAGCCTCCAAAGTCAATGCCA
ACAAGCAAACTTAAGGTA
Found at i:3375353 original size:82 final size:84
Alignment explanation
Indices: 3375129--3375353 Score: 217
Period size: 82 Copynumber: 2.7 Consensus size: 84
3375119 GAGGTTGGGT
* * * * *
3375129 AGTCTCTAGGGTCAAAGCTAGA-AGGCAGACTAATGGTAAGAAAA-TCTCTAGGGTCAAAGCCAA
1 AGTCTCCAAGGTCAAAGC-AGACAAGCAGACTAAAGGTAA-AAAAGTCTCCAGGGTCAAAGCCAA
* * * **
3375192 CAAGTAGACTTGAGATGAGGT
64 CAAGCAAACTTGAGAGGAGAC
* * * * * * *
3375213 AGTCTCCTAGGTCAATGCAGACAAGCAGACTCAAGGTAATAAAGT-TACCAAGGACAAAGCCGAC
1 AGTCTCCAAGGTCAAAGCAGACAAGCAGACTAAAGGTAAAAAAGTCT-CCAGGGTCAAAGCCAAC
3375277 AAGCAAAC-T-AGAGGAGAC
65 AAGCAAACTTGAGAGGAGAC
**
3375295 AGTCTCCAAGGTCAAAGTTGACAAGCAGACTAAAGGTAAAAAAGTCTCCAGGGTCAAAG
1 AGTCTCCAAGGTCAAAGCAGACAAGCAGACTAAAGGTAAAAAAGTCTCCAGGGTCAAAG
3375354 TCGATAGGCA
Statistics
Matches: 112, Mismatches: 25, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
82 55 0.49
83 9 0.08
84 48 0.43
ACGTcount: A:0.40, C:0.19, G:0.25, T:0.17
Consensus pattern (84 bp):
AGTCTCCAAGGTCAAAGCAGACAAGCAGACTAAAGGTAAAAAAGTCTCCAGGGTCAAAGCCAACA
AGCAAACTTGAGAGGAGAC
Found at i:3378742 original size:165 final size:164
Alignment explanation
Indices: 3378454--3378766 Score: 360
Period size: 165 Copynumber: 1.9 Consensus size: 164
3378444 ACCCGATAGG
* * * * *
3378454 CAGACTTGAGGTGAGGCAGTCTCTAATGTTAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCAC
1 CAGACTTGAGGAGAGGCAGTCTCTAAGGTTAAAGCCGACAGGCAAACTGACGGTAAAAAAGTCAC
* * * * *
3378519 CAGGGTCAAAGCCGACAAGCACACTTAAGGTAAGGTAGTCTCCAAGGTCAACGCCGATAGGCAAA
66 AAGGGTCAAAGCCAACAAGCACACTTAAGATAAGGTAGTCTCCAA-GTCAAAGCCGATAAGCAAA
* * *
3378584 CTTAGGGTAAGAAAGTCTGCCGGGTTGAGGTTAAA
130 CTGAAGGTAAAAAAGTCTGCCGGGTTGAGGTTAAA
* * * * **
3378619 CAGACTTGAGGAGAGGCCGTCTCTAGGGTCT-AAGCCGACCGGTAAACTGACGGTAAAAAAGTTT
1 CAGACTTGAGGAGAGGCAGTCTCTAAGGT-TAAAGCCGACAGGCAAACTGACGGTAAAAAAGTCA
* * * *
3378683 CAAGGGTCAAAGCCAACATGCAGACTTAAGATGAGGTTGTCTCTACAA-TCAAAGCCGATAAGCA
65 CAAGGGTCAAAGCCAACAAGCACACTTAAGATAAGGTAGTCTC--CAAGTCAAAGCCGATAAGCA
*
3378747 GACTGAAGGTAAAAAAGTCT
128 AACTGAAGGTAAAAAAGTCT
3378767 TTAGGATCAT
Statistics
Matches: 121, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
165 117 0.97
166 1 0.01
167 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (164 bp):
CAGACTTGAGGAGAGGCAGTCTCTAAGGTTAAAGCCGACAGGCAAACTGACGGTAAAAAAGTCAC
AAGGGTCAAAGCCAACAAGCACACTTAAGATAAGGTAGTCTCCAAGTCAAAGCCGATAAGCAAAC
TGAAGGTAAAAAAGTCTGCCGGGTTGAGGTTAAA
Found at i:3379449 original size:332 final size:332
Alignment explanation
Indices: 3378922--3379544 Score: 696
Period size: 332 Copynumber: 1.9 Consensus size: 332
3378912 GCAGATTGAG
* * *
3378922 GGTAGGAAAGTCGCCAGGGTCAAAACCAATAAGCACACTTAAGGTGAGGCAGTCTCCAAGGTCAA
1 GGTAAGAAAGTCGCCAAGGTCAAAACCAATAAGCACACTTAAGGTAAGGCAGTCTCCAAGGTCAA
* * * * * *
3378987 AGTCGATAGGCAAACTTAGGGTAAGAAGGTCTGCAAGGTTAAAGCCGATAGGCAGGCTTAAGGAG
66 AGCCGATAGGCAAACTGAAGGTAAGAAAGTCTGCAAGGTCAAAGCCGATAGGCAGACTTAAGGAG
* * * * * * * *
3379052 AGGCAGTCTCCAAGGTCAAAGCTGATAGGCAGACTGAGGGTAAAAAAATCTCGAGGGTTAAAGTC
131 AAGCAGTCTCCAAGGTCAAAGATGACAAGCAGACTAAGGGTAAAAAAATCTCCAAGGTCAAAGTC
* * * ***
3379117 GACAGGCAGACTTGAGATGA-GCTTA-TCTCTACAATCAAAGCCGACAGGCAGACTGAGGGTGGG
196 GACAGGCAGACTAGAGATGAGGC--AGTCTCTACAATCAAAGCCGACAGGCAAACTAAGGGTAAA
*
3379180 AAAGTCTCCAAGGTCAAAGCCAACAAGCAGACTTGAGATGAGGTAGTCTCTCGAGTCAAACTTGA
259 AAAGTCTCCAAGATCAAAGCCAACAAGCAGACTTGAGATGAGGTAGTCTCTCGAGTCAAACTTGA
3379245 TAGGCTAAA
324 TAGGCTAAA
* * * * * *
3379254 GGTAAGAAAGTCTCCAAGGTCAAAGCCGAT-AGACAGACTTGAGGTAAGGTAGTCTCCAAGGTCA
1 GGTAAGAAAGTCGCCAAGGTCAAAACCAATAAG-CACACTTAAGGTAAGGCAGTCTCCAAGGTCA
* * * ** * *
3379318 AAGCCGATAGGCACACTGAATGTAAGAAAGTCT-CTAGGGTCATTGTCGATAGGCAGACTTGAGG
65 AAGCCGATAGGCAAACTGAAGGTAAGAAAGTCTGC-AAGGTCAAAGCCGATAGGCAGACTTAAGG
* * * * * ** *
3379382 TGAAGTAGTCTCGAGGGTTAAAGATGACAAGCAGACTAAGGGTAGGAAAGTCTCCAAGGTCAAAG
129 AGAAGCAGTCTCCAAGGTCAAAGATGACAAGCAGACTAAGGGTAAAAAAATCTCCAAGGTCAAAG
* * * * *
3379447 TCGATAGGCAGACTAGAGGTGAGGCAGTCTCTAGAGTCAAAGCTGACAGGCAAACTAAGGGTAAA
194 TCGACAGGCAGACTAGAGATGAGGCAGTCTCTACAATCAAAGCCGACAGGCAAACTAAGGGTAAA
* * * *
3379512 AAAGTTTTCAAGATCAAAGCCAGCAGGCAGACT
259 AAAGTCTCCAAGATCAAAGCCAACAAGCAGACT
3379545 GAGGGCAAGA
Statistics
Matches: 233, Mismatches: 54, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
331 4 0.02
332 227 0.97
333 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.29, T:0.18
Consensus pattern (332 bp):
GGTAAGAAAGTCGCCAAGGTCAAAACCAATAAGCACACTTAAGGTAAGGCAGTCTCCAAGGTCAA
AGCCGATAGGCAAACTGAAGGTAAGAAAGTCTGCAAGGTCAAAGCCGATAGGCAGACTTAAGGAG
AAGCAGTCTCCAAGGTCAAAGATGACAAGCAGACTAAGGGTAAAAAAATCTCCAAGGTCAAAGTC
GACAGGCAGACTAGAGATGAGGCAGTCTCTACAATCAAAGCCGACAGGCAAACTAAGGGTAAAAA
AGTCTCCAAGATCAAAGCCAACAAGCAGACTTGAGATGAGGTAGTCTCTCGAGTCAAACTTGATA
GGCTAAA
Found at i:3379584 original size:42 final size:40
Alignment explanation
Indices: 3378972--3379636 Score: 210
Period size: 42 Copynumber: 15.9 Consensus size: 40
3378962 AAGGTGAGGC
* * *
3378972 AGTCTCCAAGGTCAAAGTCGATAGGCAAACTTAGGGTAAGAA
1 AGTCT-CAAGGTCAAAG-CGACAGGCAGACTGAGGGTAAGAA
* * * * * * **
3379014 GGTCTGCAAGGTTAAAGCCGATAGGCAGGCTTAAGG-AGAGGC
1 AGTCT-CAAGGTCAAAG-CGACAGGCAGACTGAGGGTA-AGAA
* *
3379056 AGTCTCCAAGGTCAAAGCTGATAGGCAGACTGAGGGTAAAAA
1 AGTCT-CAAGGTCAAAGC-GACAGGCAGACTGAGGGTAAGAA
* * * * * **
3379098 AATCTCGAGGGTTAAAGTCGACAGGCAGACTTGA-GATGAGCTT
1 AGTCTC-AAGGTCAAAG-CGACAGGCAGAC-TGAGGGTAAG-AA
* **
3379141 A-TCTCTACA-ATCAAAGCCGACAGGCAGACTGAGGGTGGGAA
1 AGTCTC-A-AGGTCAAAG-CGACAGGCAGACTGAGGGTAAGAA
* * * * **
3379182 AGTCTCCAAGGTCAAAGCCAACAAGCAGACTTGA-GATGAGGT
1 AGTCT-CAAGGTCAAAG-CGACAGGCAGAC-TGAGGGTAAGAA
** *
3379224 AGTCTCTCGAGTCAAA-CTTGATAGGCTA-A---A-GGTAAGAA
1 AGTCTCAAG-GTCAAAGC--GACAGGC-AGACTGAGGGTAAGAA
* * **
3379262 AGTCTCCAAGGTCAAAGCCGATAGACAGACTTGA-GGTAAGGT
1 AGTCT-CAAGGTCAAAG-CGACAGGCAGAC-TGAGGGTAAGAA
* * **
3379304 AGTCTCCAAGGTCAAAGCCGATAGGCACACTGAATGTAAGAA
1 AGTCT-CAAGGTCAAAG-CGACAGGCAGACTGAGGGTAAGAA
* ** * *
3379346 AGTCTCTAGGGTCATTGTCGATAGGCAGACTTGA-GGTGAAG-T
1 AGTCTC-AAGGTCAAAG-CGACAGGCAGAC-TGAGGGT-AAGAA
* * * * * *
3379388 AGTCTCGAGGGTTAAAGATGACAAGCAGACTAAGGGTAGGAA
1 AGTCTC-AAGGTCAAAG-CGACAGGCAGACTGAGGGTAAGAA
* * **
3379430 AGTCTCCAAGGTCAAAGTCGATAGGCAGACT-AGAGGTGAGGC
1 AGTCT-CAAGGTCAAAG-CGACAGGCAGACTGAG-GGTAAGAA
* * * *
3379472 AGTCTCTAGAGTCAAAGCTGACAGGCAAACTAAGGGTAAAAA
1 AGTCTCAAG-GTCAAAGC-GACAGGCAGACTGAGGGTAAGAA
* * * *
3379514 AGTTTTCAAGATCAAAGCCAGCAGGCAGACTGAGGGCAAGAA
1 AG-TCTCAAGGTCAAAGCGA-CAGGCAGACTGAGGGTAAGAA
* * *
3379556 AGTCTCAAGGGTCAAAGACGACAAGCAGACATGA-GGTTAGAG
1 AGTCTCAA-GGTCAAAG-CGACAGGCAGAC-TGAGGGTAAGAA
* *
3379598 AGTCTCTAAGGTCAAAGTCGACAGGCAGATTGAAGGTAA
1 AGTCTC-AAGGTCAAAG-CGACAGGCAGACTGAGGGTAA
3379637 AAAAATCTTT
Statistics
Matches: 464, Mismatches: 116, Indels: 86
0.70 0.17 0.13
Matches are distributed among these distances:
37 1 0.00
38 23 0.05
39 2 0.00
40 2 0.00
41 33 0.07
42 371 0.80
43 32 0.07
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.18
Consensus pattern (40 bp):
AGTCTCAAGGTCAAAGCGACAGGCAGACTGAGGGTAAGAA
Found at i:3380167 original size:42 final size:43
Alignment explanation
Indices: 3380057--3380298 Score: 167
Period size: 42 Copynumber: 5.7 Consensus size: 43
3380047 GAGATGAAGC
* * *
3380057 AGTCTCCAGGGTCAAAGCTGATAGGCAGAC-T-AAGGGTAAGAA
1 AGTCTCCAGGGTCAAAGCTGACAAGCAAACTTGAA-GGTAAGAA
* * * * * * **
3380099 AGTTTTCAAGGTCAAAG-TCAATAAGCAAACTTG-AGGTGAGGC
1 AGTCTCCAGGGTCAAAGCT-GACAAGCAAACTTGAAGGTAAGAA
* * * *
3380141 AGTCTCTATGGTCAAAGCAGACAAGCAGAC-TGAAGGTAAGAA
1 AGTCTCCAGGGTCAAAGCTGACAAGCAAACTTGAAGGTAAGAA
* * * **
3380183 AGTCGCCAGGGTCAAAGCTGACAAGGAAACTTGAGACG--AGGC
1 AGTCTCCAGGGTCAAAGCTGACAAGCAAACTTGA-AGGTAAGAA
* * *
3380225 AGTCTCCAAGGTCAAAACTGACAGGCAAAC-TGAAGGTAAGAA
1 AGTCTCCAGGGTCAAAGCTGACAAGCAAACTTGAAGGTAAGAA
* * *
3380267 AGTCTCTAGGGGCAAAGCTGACAAGCAGACTT
1 AGTCTCCAGGGTCAAAGCTGACAAGCAAACTT
3380299 AAGTTGAAGT
Statistics
Matches: 147, Mismatches: 43, Indels: 19
0.70 0.21 0.09
Matches are distributed among these distances:
40 2 0.01
41 6 0.04
42 131 0.89
43 6 0.04
44 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.28, T:0.17
Consensus pattern (43 bp):
AGTCTCCAGGGTCAAAGCTGACAAGCAAACTTGAAGGTAAGAA
Found at i:3382714 original size:42 final size:42
Alignment explanation
Indices: 3382646--3386678 Score: 674
Period size: 42 Copynumber: 96.9 Consensus size: 42
3382636 AAGGTGAGGC
* * *
3382646 AGTCTCTAAGGT-AAATGTCGAGAGGCAGAC-TGAGGATAAGAA
1 AGTCTCTAGGGTCAAA-GCCGATAGGCAGACTTGAGG-TAAGAA
* * ** **
3382688 AGTCTCTAGGGTTAAAGCCGATAGGCAGACTTTAAATAAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * *
3382730 AGTC-CTTAGGGTCAAAGCCAACAGGCAGAC-TGAAGGTAGGAA
1 AGTCTC-TAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * * * * * *
3382772 AGCCACCAGGGTCAAAACCGATAGACAGACATAAGATGAGAT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * ** * * **
3382814 AGTCCCTTGGGTTAAAGGTGATAGGCAAACTTGAGGTTAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * **
3382856 TGTCTCAAGGGTCAAAG-CTACCAGGCAGACTAAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGA-TAGGCAGACTTGAGGTAAGAA
* * ** *
3382898 AGTCTCTAGGGTTAAAGCCGACAGATAGACTTG-GGCTGAAG-T
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGG-T-AAGAA
* * * * * * * * **
3382940 AGTCTCCAAGGTCAAAGCCGAAAGACAAACTTGTGTTGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * **
3382982 AGTCTTTAGGGTCAAAGCCGACAGGCAGACTAAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * **
3383024 AGTCTCTAAGGTCAAAGCTGATAGGCAGACTTGAGATGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * *
3383066 AGTCTCCAAGGTTAAAGTCGATAGGCAGAC-TAAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * *
3383108 AGTCT-TCAAGGTCAAAGTCGA-CGGACAGACTTAAGATAAGGCA
1 AGTCTCT-AGGGTCAAAGCCGATAGG-CAGACTTGAGGTAA-GAA
* * * * * *
3383151 A-TCTCCAAGGTCAAAGCCG-TCAGGTAGAC-TAAGTGCAAAAA
1 AGTCTCTAGGGTCAAAGCCGAT-AGGCAGACTTGAG-GTAAGAA
* * * * * ** * *
3383192 AGTCTCCAAGGTCAAAGCTGACAGGTAGACTAAAAGTAAAAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * *
3383234 AGTCTCCA-GGTCAAAGTCGACAAG-ACGACTTGAGGTAAG--
1 AGTCTCTAGGGTCAAAGCCGATAGGCA-GACTTGAGGTAAGAA
* * * * *
3383273 -G---C-ATGGTCAAAGCTGACA-GCAGACTTGA--AAAGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGA--A
* * ** * * * *
3383309 AGTCTCTAAGGTGAAAGTTGACAAGCAGAC-TAAGGGTAGGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * ** *
3383351 AGTC-CCAAGGTCAAAGCTGACAAGCAGACTTG-GGATGCGGA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGG-TAAGAA
* *** * * * *
3383392 AGTCTCCAAAATCAAAGCCGGTAGGTATAC-TAAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * *** * * * **
3383434 AGTCTCCAAGGTTAAAGTCGATAAAAACACTTGAGATGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * *
3383476 AGTGTCTAAGGTCAAAGGCGATAGGCAGAC-TGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * **
3383518 AGTCTCTTGGGTTAAATTCGATAGGCAGACTTGAGGT--G--
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3383556 AG---GTAAGCTCAAAGCCGACAGGTAGACTTGAAGGCAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * **
3383596 AGTCTCCAAGGTCAAAGCCAATAGGCAGACTTAAGGTAAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * *
3383638 AGCCT-TCAAGGTCAAAGCCGATAGGCAAAC-TAAGGATAAGAA
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTGAGG-TAAGAA
* * * * * ** **
3383680 AGTCTCCAAGGTCAAAACCAATAGGCAGACTTAAGGGGAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * *
3383722 AGTCTCTAAGGTCAAAGTCGATAGGCAGAC-TAAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * **
3383764 AGTCTCCAAGGTCAATGCCAACTA-GCAGACTTGAGATGAGGT
1 AGTCTCTAGGGTCAAAGCCGA-TAGGCAGACTTGAGGTAAGAA
* ** * *
3383806 AGTATCTAGGGTCAAAGTTGACTA-GCAGAC-TAATGGTAACAA
1 AGTCTCTAGGGTCAAAGCCGA-TAGGCAGACTTGA-GGTAAGAA
* ** * * * * * **
3383848 AGTCTCAAAAGTCAAAACTGACAAGCAGACTTGAGGTGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * * *
3383890 AGCCT-TGAAGGTCAATGTCGACAGGTAGAC-TAAGGGTATGAA
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * * *
3383932 AGTCTCCAAGGTCAAAACCGATAAGCAGACTTAAGATGAGGCA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAGAA
* * * * * * * * **
3383975 A-CCCCCAAGGTCAAAGCTGACAGGCAGACTTGACGTTAGGCT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * *
3384017 A-TCTCAAGGGTCAAAGCTGACAAGCAGAC-TGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * **
3384058 AGTCTTTAGGGTCAAAGCTGACAGGCAGACTTAAGGTGAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3384100 AGTCTCCTA-CGTCAAAGTCGAAAGGCAGACTTGTGTTGAGGTAA
1 AGTCT-CTAGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAG-AA
* * * * * **
3384144 ACT-TC-AAGGTCAAAGCTGACAAGCAGACTCAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * *
3384184 AGCCACTAAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAGAA
* * * * * * *
3384227 A-TCTCAAAGGTCAAAGTCAACAGGCAGAC-TAAGGGTAGGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * * **
3384268 AGCCTTTAGGGTCAAAGTCGATAGACAGACTTAAGATGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * * * **
3384310 AGCCCCCAGGGTCAAAGCTGACAGGCAAACTTGATGTTAGGCT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * **
3384353 A-TCTCAAGGGTCAAAGCTGACAAGTGGAC-TGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * **
3384394 AGTCTTTAGGGTCAAAGCCGACAGGCAGATTTAAGGTGAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * * **
3384436 AGTCTCTTGGGTCAAAGTCAAAAGGCAGACTTGTGTTGAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3384478 AGACT-TCAAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCA
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAGAA
* * ** * *
3384521 A-TCTCAAAGGTCAAAATCGACAGGCAGACTT-AGGGTAGGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * ** * * **
3384562 AGCCT-TCAGGGTCAAAGTCGATAGATAGAC-TGAAGATGAGGC
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * * * **
3384604 AGCCCCCAGGGTCAAAGCTGACAGGCAGACTTGACGTTAGGCT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* ** * **
3384647 A-TCTCAAGGGTCAAAGCTAACAAACAGAC-TGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * * * **
3384688 AGTTTTTAGGGTTAAAGTCGACAGGCAAACTTGAGGTGAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
** * * * * * **
3384730 AGTCTC-ATGGGTCAAAATCAAAAGGCAGACTTGTGTTGAGGT
1 AGTCTCTA-GGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * *
3384772 AGACT-TCAAGGTCAAAGCTGACAAGCAGAC-TGAAGGTAAGAA
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * * *
3384814 AGTCACTAAGGTCAAAGCCGACAAGCATACTTGAGATGAAGCA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAGAA
* * * * *
3384857 A-TCTCCAAGGTCAAAGTCGACAGGCAGAC-TGAGGGTAGGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * ** * * *
3384898 AGCCT-TCAGGGTCAAAGTCAATAGATAGACTTGAGATGAGAT
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3384940 AGTCTCCAAGGTCAAAGCCGACAGTCTA-AC-T-AAGTACAAAAA
1 AGTCTCTAGGGTCAAAGCCGATAGGC-AGACTTGAGGT--AAGAA
* * * * * * *
3384982 AGTCTCTAAGGTTAAAGCTGACAAGTAGACTTGAGGTAAGGTA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAA-GAA
* * * * * * * * *
3385025 A-TCTCCAAGGTCAAAACTGACAAGCAGAC-TGAAAGAAAAAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * *
3385066 AGTCTCCA-GGTTAAAGACGACT-GGCACACTTGAGGTAAG--
1 AGTCTCTAGGGTCAAAGCCGA-TAGGCAGACTTGAGGTAAGAA
* * * *** **
3385105 -G---C-ATGGTCAAAGTCGGTAGGCAGA-TTGAGACGAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3385141 AGTCTCCAAGGTCAAAGTTC-ACAGGCAGAC-TAAGGGTAGGAA
1 AGTCTCTAGGGTCAAAG-CCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * *
3385183 AGTCTCAAAGGTCAAAGCTGACAAGCAGACTTG-GGATGAGGA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGG-TAAGAA
* ** * * *
3385225 AGTATCTAAAGCCAAAGCCGACAGGCAGAC-TAAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * * **
3385267 TGTCTCCAAGGTCAAGGTCGACAGGCAGACTTGAGGTGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * **
3385309 AGTCTCCAAGGTCAAAGGCGATAGGCAGACTAAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * * *
3385351 AATCTCTAGGGTTAAAGCCAACAAGTACATTTGAGGT--G--
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3385389 AG--GC-AGGGCCAAAGCTGATAGGCAAACATGAAGCTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * * * **
3385429 AGTCTCAAAGGTTAAAGCTGATAGGTAGACTTAAGGTGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * *
3385471 AGTCTTTAGGATCAAAGTCGACAGGTAGAC-TGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * * **
3385513 AGTCTCGAAGGTCAAAGTCAACAGGCAGACTTAAGGTGAGGT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * *
3385555 AGTCTCTAAGGTCAAAGCCGACAAGCAGAC-TGAGAGTAAAAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAG-GTAAGAA
* * * * * * * *
3385597 AGTCTTTAGCGTCAAAACTGACT-GGCAGACTAGAGATGAGGA
1 AGTCTCTAGGGTCAAAGCCGA-TAGGCAGACTTGAGGTAAGAA
* * * *
3385639 AGTCTCTAGGGTCAAAGTCGACAAGCCGAC-TGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * **
3385681 AGTCTCAATGGTCAAAGCTGACAGGCAAACTTGAGTTAAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * *
3385723 AGCCT-TGAGGGTCAAAACTGACAAGCCGAC-TAAGGGTAAGAA
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * *** * *
3385765 AATCTCTAGGGTCAAAGTCGACAATTAGACTTGAGATAAGAC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * **
3385807 CGTCTCCAAGGTCAAAGTCGACAGGTAGACTAAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * *
3385849 AGTCTCCATGGTAAAAGTCGATAGGCAGACTTAAGGT--G--
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
** * *
3385887 AG---CTAAAGTCAAAGCCGATAGGTAGACTTGAGGGAAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * *
3385927 AGTCTCTAGGGTCCAAGCTGATAGGCAGACTTGAGGTGAGGCA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAGAA
** * * * *
3385970 A-TCTCTAGGGTCAAAGCAAACAGGCAAACTTGGGGAAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* ** ** * * * **
3386011 CA-TCTCTAGGGCCAAAGTTGACCGGCAAACTTAAGGTGAGGT
1 -AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * *
3386053 AGTCTCTAGGGTCAATGCCGAGAGGCAGAC-TAATGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * **
3386095 AGTCT-TAAGGGTTAAAGTCGATAGGCAGACTTGAGATGAGGT
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* *
3386137 AGTCTTTAGGGTCAAAGCCGACAGGCAGA-TTGAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTG-AGGTAAGAA
* * * * * * * * * *
3386179 AGTCTCCAAGGTCAAAACCAATAAGCTGATTTGAGATGAGGCAG
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAG-AA
* * ** * *
3386223 AG-C-CTAAGGTCAAAGCTGACCGGCAGACTTGAGGTTAGGA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3386263 TGTCTCAATGGTCAAAGCCGACAGACA-AATTGATGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* ** *
3386305 AGTCTCTAGGGTCAAAGCTGACGGGCAGACTTAAGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * **
3386347 AGTCTCTAGAGTCAAAGCCAACAGGCAGGCTTGAGGTGAGTT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * * * **
3386389 ACTCTCAAAGGTCAAAGCCGAAAGGCAGACTTGTGTTGAGGCT
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGT-AAGAA
* * * * * *
3386432 A-TCTCTAGGGTCACAGTCAACAAGCTGAC-TGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* * * * * * * * **
3386473 AGTGTCAAAGGTCAAAGCCAAGAGGCAAACTTGAGATGAGGC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * *
3386515 AGTCTCTAGGGTTAAAGCCGACAGACAGA-TTGAGGGTAAGAA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* ** * * * * * * * *
3386557 AATCTCCGGGGTTAAATCTGATCGGTAGACTTGAGTTGAGAC
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
* * * * * *
3386599 AGTCT-TCAAGGCCAAAACCGAAAGGCAGAC-TAAGGGTAAAAA
1 AGTCTCT-AGGGTCAAAGCCGATAGGCAGACTTGA-GGTAAGAA
* *
3386641 AGTCTCTAGGGTCAAAGCCAATAGGTAGACTTGAGGTA
1 AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTA
3386679 GGGTTAAAGC
Statistics
Matches: 2826, Mismatches: 968, Indels: 394
0.67 0.23 0.09
Matches are distributed among these distances:
32 3 0.00
34 18 0.01
35 86 0.03
36 9 0.00
37 2 0.00
38 10 0.00
40 20 0.01
41 229 0.08
42 2233 0.79
43 205 0.07
44 11 0.00
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.19
Consensus pattern (42 bp):
AGTCTCTAGGGTCAAAGCCGATAGGCAGACTTGAGGTAAGAA
Found at i:3383028 original size:84 final size:84
Alignment explanation
Indices: 3382940--3386419 Score: 1074
Period size: 84 Copynumber: 41.9 Consensus size: 84
3382930 GGGCTGAAGT
* * * * ** *
3382940 AGTCTCCAAGGTCAAAGCCGAAAGACAAACTTGTGTTGAGGCAGTCTTTAGGGTCAAAGCCGACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
3383005 GGCAGACTAAAGGTAAGAA
66 GGCAGACTAAAGGTAAGAA
* * * * * *
3383024 AGTCTCTAAGGTCAAAGCTGATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTTAAAGTCGATA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
*
3383089 GGCAGACTAAGGGTAAGAA
66 GGCAGACTAAAGGTAAGAA
* * * * * * *
3383108 AGTCTTCAAGGTCAAAGTCG-ACGGACAGACTTAAGATAAGGCAATCTCCAAGGTCAAAGCCGTC
1 AGTCTCCAAGGTCAAAGCCGAAAGG-CAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * *
3383172 AGGTAGACT-AAGTGCAAAAA
65 AGGCAGACTAAAG-GTAAGAA
* * * * * * *** *
3383192 AGTCTCCAAGGTCAAAGCTGACAGGTAGAC-TAAAAGTAAAAAAGTCTCC-AGGTCAAAGTCGAC
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGA-TGAGGCAGTCTCCAAGGTCAAAGCCGAC
* **
3383255 AAG-ACGACTTGAGGTAAG--
65 AGGCA-GACTAAAGGTAAGAA
* * * * * * * **
3383273 -G----CATGGTCAAAGCTGACA-GCAGACTTGAAAAGAGGCAGTCTCTAAGGTGAAAGTTGACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
* * *
3383332 AGCAGACTAAGGGTAGGAA
66 GGCAGACTAAAGGTAAGAA
* * * * ** **
3383351 AGTC-CCAAGGTCAAAGCTGACAA-GCAGACTTGGGATGCGGAAGTCTCCAAAATCAAAGCCGGT
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * *
3383414 AGGTATACTAAGGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * ** * * * * *
3383434 AGTCTCCAAGGTTAAAGTCGATAA-AAACACTTGAGATGAGGCAGTGTCTAAGGTCAAAGGCGAT
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
*
3383498 AGGCAGACTGAAGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
*** * ** * * *
3383518 AGTCTCTTGGGTTAAATTCGATAGGCAGACTTGAGGTGA-G--G--T--AAGCTCAAAGCCGACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
* * *
3383576 GGTAGACTTGAAGGCAAGAA
66 GGCAGAC-TAAAGGTAAGAA
* * * * * * *
3383596 AGTCTCCAAGGTCAAAGCC-AATAGGCAGACTTAAGGTAAGGTAGCCTTCAAGGTCAAAGCCGAT
1 AGTCTCCAAGGTCAAAGCCGAA-AGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
*
3383660 AGGCAAACT-AAGGATAAGAA
65 AGGCAGACTAAAGG-TAAGAA
* * ** * * * *
3383680 AGTCTCCAAGGTCAAAACC-AATAGGCAGACTTAAGGGGAGGTAGTCTCTAAGGTCAAAGTCGAT
1 AGTCTCCAAGGTCAAAGCCGAA-AGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
*
3383744 AGGCAGACTAAGGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * **
3383764 AGTCTCCAAGGTCAATGCC-AACTA-GCAGACTTGAGATGAGGTAGTATCTAGGGTCAAAGTTGA
1 AGTCTCCAAGGTCAAAGCCGAA--AGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* *
3383827 CTA-GCAGACTAATGGTAACAA
64 C-AGGCAGACTAAAGGTAAGAA
* * * * * * ** * *
3383848 AGTCTCAAAAGTCAAAACTGACAA-GCAGACTTGAGGTGAGGCAGCCTTGAAGGTCAATGTCGAC
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * *
3383912 AGGTAGACTAAGGGTATGAA
65 AGGCAGACTAAAGGTAAGAA
* * ** * *
3383932 AGTCTCCAAGGTCAAAACCGATAA-GCAGACTTAAGATGAGGCAACCCCCAAGGTCAAAGCTGAC
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * * * **
3383996 AGGCAGACTTGACGTTAGGCT
65 AGGCAGAC-TAAAGGTAAGAA
* * * ** ** * *
3384017 A-TCT-CAAGGGTCAAAGCTGACAA-GCAGAC-TGAAGGTAAGAAAGTCTTTAGGGTCAAAGCTG
1 AGTCTCCAA-GGTCAAAGCCGA-AAGGCAGACTTG-AGATGAGGCAGTCTCCAAGGTCAAAGCCG
* * **
3384078 ACAGGCAGACTTAAGGTGAGGT
63 ACAGGCAGACTAAAGGTAAGAA
* * * * * * ** * *
3384100 AGTCTCCTACGTCAAAGTCGAAAGGCAGACTTGTGTTGAGGTAAACTTCAAGGTCAAAGCTGACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
* *
3384165 AGCAGACTCAAGGTAAGAA
66 GGCAGACTAAAGGTAAGAA
* * * * * * * * * *
3384184 AGCCACTAAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCAATCTCAAAGGTCAAAGTCAACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
* *
3384249 GGCAGACTAAGGGTAGGAA
66 GGCAGACTAAAGGTAAGAA
* ** * * * * * * * * *
3384268 AGCCTTTAGGGTCAAAGTCGATAGACAGACTTAAGATGAGGCAGCCCCCAGGGTCAAAGCTGACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
* * * * * **
3384333 GGCAAACTTGATGTTAGGCT
66 GGCAGAC-TAAAGGTAAGAA
* * * ** ** *
3384353 A-TCT-CAAGGGTCAAAGCTGACAAGTG--GAC-TGAAGGTAAGAAAGTCTTTAGGGTCAAAGCC
1 AGTCTCCAA-GGTCAAAGCCGA-AAG-GCAGACTTG-AGATGAGGCAGTCTCCAAGGTCAAAGCC
* * * **
3384413 GACAGGCAGATTTAAGGTGAGGT
62 GACAGGCAGACTAAAGGTAAGAA
*** * * * * * * *
3384436 AGTCTCTTGGGTCAAAGTCAAAAGGCAGACTTGTGTTGAGGTAGACTTCAAGGTCAAAGCCGACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
* ** * *
3384501 GGCACACTTGAGATGAAGCA
66 GGCAGACTAAAGGT-AAGAA
* ** * * * * * * *
3384521 A-TCTCAAAGGTCAAAATCGACAGGCAGACTT-AG-GGTAGGAAAGCCTTCAGGGTCAAAGTCGA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATG-AGG-CAGTCTCCAAGGTCAAAGCCGA
* ** * * * **
3384583 TAGATAGACTGAAGATGAGGC
64 CAGGCAGACTAAAGGTAAGAA
* * * * * * **
3384604 AGCCCCCAGGGTCAAAGCTGACAGGCAGACTTGACG-TTAGGCTA-TCT-CAAGGGTCAAAGCTA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGA-GATGAGGC-AGTCTCCAA-GGTCAAAGCCG
** *
3384666 ACAAACAGACTGAAGGTAAGAA
63 ACAGGCAGACTAAAGGTAAGAA
* ** * * * * * * * * ** * *
3384688 AGTTTTTAGGGTTAAAGTCGACAGGCAAACTTGAGGTGAGGTAGTCT-CATGGGTCAAAATCAAA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCA-AGGTCAAAGCCGAC
*** * * **
3384752 AGGCAGACTTGTGTTGAGGT
65 AGGCAGACTAAAGGTAAGAA
* * * * * ** * *
3384772 AGACTTCAAGGTCAAAGCTGACAA-GCAGAC-TGAAGGTAAGAAAGTCACTAAGGTCAAAGCCGA
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTG-AGATGAGGCAGTCTCCAAGGTCAAAGCCGA
* * ** * *
3384835 CAAGCATACTTGAGATGAAGCA
64 CAGGCAGACTAAAGGT-AAGAA
* * * * * * * * *
3384857 A-TCTCCAAGGTCAAAGTCGACAGGCAGAC-TGAG-GGTAGGAAAGCCTTCAGGGTCAAAGTCAA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATG-AGG-CAGTCTCCAAGGTCAAAGCCGA
* ** ** * * *
3384919 TAGATAGACTTGAGATGAGAT
64 CAGGCAGACTAAAGGTAAGAA
* * * ** *** * * *
3384940 AGTCTCCAAGGTCAAAGCCGACAGTCTA-AC-TAAGTACAAAAAAGTCTCTAAGGTTAAAGCTGA
1 AGTCTCCAAGGTCAAAGCCGAAAGGC-AGACTTGAG-ATGAGGCAGTCTCCAAGGTCAAAGCCGA
* * ** *
3385003 CAAGTAGACTTGAGGTAAGGTA
64 CAGGCAGACTAAAGGTAA-GAA
* * * *** * *
3385025 A-TCTCCAAGGTCAAAACTGACAA-GCAGAC-TGAAAGA-AAAAAAGTCTCC-AGGTTAAAGACG
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTG--AGATGAGGCAGTCTCCAAGGTCAAAGCCG
* * **
3385085 ACTGGCACACTTGAGGTAAG--
63 ACAGGCAGACTAAAGGTAAGAA
* * ** * * *
3385105 -G----CATGGTCAAAGTCGGTAGGCAGA-TTGAGACGAGGTAGTCTCCAAGGTCAAAGTTC-AC
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAG-CCGAC
* *
3385163 AGGCAGACTAAGGGTAGGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * * * *
3385183 AGTCTCAAAGGTCAAAGCTGACAA-GCAGACTTGGGATGAGGAAGTATCTAAAGCCAAAGCCGAC
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
*
3385247 AGGCAGACTAAGGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * * *
3385267 TGTCTCCAAGGTCAAGGTCGACAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGGCGATA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
3385332 GGCAGACTAAAGGTAAGAA
66 GGCAGACTAAAGGTAAGAA
* * * * * * * * * * * *
3385351 AATCTCTAGGGTTAAAGCC-AACAAGTACATTTGAGGTGAGGCAG-------GGCCAAAGCTGAT
1 AGTCTCCAAGGTCAAAGCCGAA-AGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * *
3385408 AGGCAAACATGAAGCTAAGAA
65 AGGCAGAC-TAAAGGTAAGAA
* * * * * * * ** *
3385429 AGTCTCAAAGGTTAAAGCTGATAGGTAGACTTAAGGTGAGGCAGTCT-TTAGGATCAAAGTCGAC
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGG-TCAAAGCCGAC
* * *
3385493 AGGTAGACTGAGGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * *
3385513 AGTCTCGAAGGTCAAAGTC-AACAGGCAGACTTAAGGTGAGGTAGTCTCTAAGGTCAAAGCCGAC
1 AGTCTCCAAGGTCAAAGCCGAA-AGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * *
3385577 AAGCAGACT-GAGAGTAAAAA
65 AGGCAGACTAAAG-GTAAGAA
** * * ** * * * * *
3385597 AGTCT-TTAGCGTCAAAACTGACTGGCAGACTAGAGATGAGGAAGTCTCTAGGGTCAAAGTCGAC
1 AGTCTCCAAG-GTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * * *
3385661 AAGCCGACTGAGGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * * ** * * *
3385681 AGTCT-CAATGGTCAAAGCTGACAGGCAAACTTGAGTTAAGGCAGCCTTGAGGGTCAAAACTGAC
1 AGTCTCCAA-GGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* * *
3385745 AAGCCGACTAAGGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * ** * * * *
3385765 AATCTCTAGGGTCAAAGTCGACAA-TTAGACTTGAGATAAGACCGTCTCCAAGGTCAAAGTCGAC
1 AGTCTCCAAGGTCAAAGCCGA-AAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
*
3385829 AGGTAGACTAAAGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * *
3385849 AGTCTCCATGGTAAAAGTCGATAGGCAGACTT-A-A-G-GTG-AG-CT--AAAGTCAAAGCCGAT
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAG-GCAGTCTCCAAGGTCAAAGCCGAC
* * * *
3385906 AGGTAGACTTGAGGGAAAGAA
65 AGGCAGAC-TAAAGGTAAGAA
* * * * * * * * * **
3385927 AGTCTCTAGGGTCCAAGCTGATAGGCAGACTTGAGGTGAGGCAATCTCTAGGGTCAAAGCAAACA
1 AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
* *** *
3385992 GGCAAACTTGGGGAAAGAA
66 GGCAGACTAAAGGTAAGAA
* * * ** ** * * * * * * * *
3386011 CA-TCTCTAGGGCCAAAGTTGACCGGCAAACTTAAGGTGAGGTAGTCTCTAGGGTCAATGCCGAG
1 -AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
*
3386075 AGGCAGACTAATGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * ** *
3386095 AGTCT-TAAGGGTTAAAGTCGATAGGCAGACTTGAGATGAGGTAGTCTTTAGGGTCAAAGCCGAC
1 AGTCTCCAA-GGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGAC
* *
3386159 AGGCAGATTGAAGGTAAGAA
65 AGGCAGACTAAAGGTAAGAA
* * * * * * *
3386179 AGTCTCCAAGGTCAAAACC-AATAAGCTGATTTGAGATGAGGCAGAGC-CTAAGGTCAAAGCTGA
1 AGTCTCCAAGGTCAAAGCCGAA-AGGCAGACTTGAGATGAGGCAG-TCTCCAAGGTCAAAGCCGA
* ** * *
3386242 CCGGCAGACTTGAGGTTAGGA
64 CAGGCAGACTAAAGGTAAGAA
* * * * * * ** * * *
3386263 TGTCT-CAATGGTCAAAGCCGACAGACA-AATTGATGGTAAGAAAGTCTCTAGGGTCAAAGCTGA
1 AGTCTCCAA-GGTCAAAGCCGAAAGGCAGACTTGA-GATGAGGCAGTCTCCAAGGTCAAAGCCGA
* *
3386326 CGGGCAGACTTAAGGTAAGAA
64 CAGGCAGACTAAAGGTAAGAA
* * * ** * *
3386347 AGTCT-CTAGAGTCAAAGCC-AACAGGCAGGCTTGAGGTGAGTTACTCTCAAAGGTCAAAGCCGA
1 AGTCTCCAAG-GTCAAAGCCGAA-AGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGA
*
3386410 AAGGCAGACT
64 CAGGCAGACT
3386420 TGTGTTGAGG
Statistics
Matches: 2519, Mismatches: 739, Indels: 276
0.71 0.21 0.08
Matches are distributed among these distances:
74 3 0.00
75 21 0.01
76 83 0.03
77 59 0.02
78 117 0.05
79 8 0.00
80 3 0.00
81 4 0.00
82 21 0.01
83 198 0.08
84 1881 0.75
85 117 0.05
86 4 0.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.19
Consensus pattern (84 bp):
AGTCTCCAAGGTCAAAGCCGAAAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACA
GGCAGACTAAAGGTAAGAA
Found at i:3383395 original size:41 final size:41
Alignment explanation
Indices: 3383277--3383409 Score: 110
Period size: 41 Copynumber: 3.2 Consensus size: 41
3383267 GGTAAGGCAT
** * * *
3383277 GGTCAAAGCTGAC-AGCAGACTTGAAAAGAGGCAGTCTCTAA
1 GGTCAAAGCTGACAAGCAGACTTGGGATG-GGAAGTCTCCAA
* * * *
3383318 GGTGAAAGTTGACAAGCAGACTAAGGG-TAGGAAAGTC-CCAA
1 GGTCAAAGCTGACAAGCAGACT-TGGGAT-GGGAAGTCTCCAA
3383359 GGTCAAAGCTGACAAGCAGACTTGGGATGCGGAAGTCTCCAA
1 GGTCAAAGCTGACAAGCAGACTTGGGATG-GGAAGTCTCCAA
**
3383401 AATCAAAGC
1 GGTCAAAGC
3383410 CGGTAGGTAT
Statistics
Matches: 71, Mismatches: 15, Indels: 11
0.73 0.15 0.11
Matches are distributed among these distances:
40 4 0.06
41 41 0.58
42 24 0.34
43 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.29, T:0.16
Consensus pattern (41 bp):
GGTCAAAGCTGACAAGCAGACTTGGGATGGGAAGTCTCCAA
Done.