Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold16
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5287347
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 8769 characters in sequence are not A, C, G, or T
File 22 of 35
Found at i:3384683 original size:294 final size:294
Alignment explanation
Indices: 3384191--3384794 Score: 1019
Period size: 294 Copynumber: 2.1 Consensus size: 294
3384181 GAAAGCCACT
*
3384191 AAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCAATCTCAAAGGTCAAAGTCAACAGGCAGAC
1 AAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCAATCTCAAAGGTCAAAATCAACAGGCAGAC
* *
3384256 TAAGGGTAGGAAAGCCTTTAGGGTCAAAGTCGATAGACAGACTTAAGATGAGGCAGCCCCCAGGG
66 TAAGGGTAGGAAAGCCTTCAGGGTCAAAGTCGATAGACAGACTGAAGATGAGGCAGCCCCCAGGG
* * ***
3384321 TCAAAGCTGACAGGCAAACTTGATGTTAGGCTATCTCAAGGGTCAAAGCTGACAAGTGGACTGAA
131 TCAAAGCTGACAGGCAAACTTGACGTTAGGCTATCTCAAGGGTCAAAGCTAACAAACAGACTGAA
* * *
3384386 GGTAAGAAAGTCTTTAGGGTCAAAGCCGACAGGCAGATTTAAGGTGAGGTAGTCTCTTGGGTCAA
196 GGTAAGAAAGTCTTTAGGGTCAAAGCCGACAGGCAAACTTAAGGTGAGGTAGTCTCATGGGTCAA
*
3384451 AGTCAAAAGGCAGACTTGTGTTGAGGTAGACTTC
261 AATCAAAAGGCAGACTTGTGTTGAGGTAGACTTC
*
3384485 AAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCAATCTCAAAGGTCAAAATCGACAGGCAGAC
1 AAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCAATCTCAAAGGTCAAAATCAACAGGCAGAC
* *
3384550 TTAGGGTAGGAAAGCCTTCAGGGTCAAAGTCGATAGATAGACTGAAGATGAGGCAGCCCCCAGGG
66 TAAGGGTAGGAAAGCCTTCAGGGTCAAAGTCGATAGACAGACTGAAGATGAGGCAGCCCCCAGGG
*
3384615 TCAAAGCTGACAGGCAGACTTGACGTTAGGCTATCTCAAGGGTCAAAGCTAACAAACAGACTGAA
131 TCAAAGCTGACAGGCAAACTTGACGTTAGGCTATCTCAAGGGTCAAAGCTAACAAACAGACTGAA
* * * *
3384680 GGTAAGAAAGTTTTTAGGGTTAAAGTCGACAGGCAAACTTGAGGTGAGGTAGTCTCATGGGTCAA
196 GGTAAGAAAGTCTTTAGGGTCAAAGCCGACAGGCAAACTTAAGGTGAGGTAGTCTCATGGGTCAA
3384745 AATCAAAAGGCAGACTTGTGTTGAGGTAGACTTC
261 AATCAAAAGGCAGACTTGTGTTGAGGTAGACTTC
*
3384779 AAGGTCAAAGCTGACA
1 AAGGTCAAAGCCGACA
3384795 AGCAGACTGA
Statistics
Matches: 289, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
294 289 1.00
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.19
Consensus pattern (294 bp):
AAGGTCAAAGCCGACAGGCACACTTGAGATGAAGCAATCTCAAAGGTCAAAATCAACAGGCAGAC
TAAGGGTAGGAAAGCCTTCAGGGTCAAAGTCGATAGACAGACTGAAGATGAGGCAGCCCCCAGGG
TCAAAGCTGACAGGCAAACTTGACGTTAGGCTATCTCAAGGGTCAAAGCTAACAAACAGACTGAA
GGTAAGAAAGTCTTTAGGGTCAAAGCCGACAGGCAAACTTAAGGTGAGGTAGTCTCATGGGTCAA
AATCAAAAGGCAGACTTGTGTTGAGGTAGACTTC
Found at i:3386236 original size:498 final size:498
Alignment explanation
Indices: 3385110--3386369 Score: 1145
Period size: 498 Copynumber: 2.5 Consensus size: 498
3385100 GTAAGGCATG
* * * *
3385110 GTCAAAGTCGGTAGGCAGA-TTGAGACGAGGTAGTCTCCAAGGTCAAAGTTC-ACAGGCAGACT-
1 GTCAAAGTCGATAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAG-TCGACAGGCAGACTG
* * * * * *
3385172 AAGGGTAGGAAAGTCTCAAAGGTCAAAGCTGACAAGCAGACTTGGGATGAGGAAGTA-TCTAAAG
65 AA-GGTAAGAAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTGAGATGAGGCAG-AGCCTAAGG
* * * ** * *
3385236 CCAAAGCCGACAGGCAGACTAAGGGTAAGAATGTCTCCAAGGTCAAGGTCGACAGGCAGACTTGA
128 TCAAAGCTGACAAGCAGACTAAGGGTAAGAAAATCTCCAAGGTCAAAGTCGACAAGCAGACTTGA
* * * * * *
3385301 GGTGAGGCAGTCTCCAAGGTCAAAGGCGATAGGCAGACTAAAGGTAAGAAAATCTCTAGGGTTAA
193 GATAAGACAGTCTCCAAGGTCAAAGGCGACAGGCAGACTAAAGGTAAGAAAATCTCCAGGGTAAA
* * * ** * *
3385366 AGCCAACAAGTACATTTGAGGTGAGGCAGGGCCAAAGCTGATAGGCAAACATGAAGCTAAGAAAG
258 AGCCAACAAGCACACTTAAGGTGAGGCAAAGCCAAAGCCGATAGGCAAACATGAAGCAAAGAAAG
* * * * *
3385431 TCTCAAAGGTTAAAGCTGATAGGTAGACTTAAGGTGAGGCAGTCTTTAGGATCAAAGTCGACAGG
323 TCTCAAAGGTCAAAGCTGATAGGCAGACTTAAGGTGAGGCAATCTCTAGGATCAAAGTCAACAGG
* * * * *
3385496 TAGACTGAGGGTAAGAAAGTCTCGAAGGTCAAAGTCAACAGGCAGACTTAAGGTGAGGTAGTCTC
388 CAAACTGAGGGAAAGAAAGTCTCGAAGGCCAAAGTCAACAGGCAAACTTAAGGTGAGGTAGTCTC
* *
3385561 TAAGGTCAAAGCCGACAAGCAGACTGAGAGTAAAAAAGTCTTTAGC
453 TAAGGTCAAAGCCGACAAGCAGACTAAGAGTAAAAAAGTCTTAAGC
* * * * *
3385607 GTCAAA-ACTGACT-GGCAGACTAGAGATGAGGAAGTCTCTAGGGTCAAAGTCGACAAGCCGACT
1 GTCAAAGTC-GA-TAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGTCGACAGGCAGACT
* * * * * *
3385670 GAGGGTAAGAAAGTCT-CAATGGTCAAAGCTGACAGGCAAACTTGAGTTAAGGC--AGCCTTGAG
64 GAAGGTAAGAAAGTCTCCAA-GGTCAAAGCTGACAAGCAGACTTGAGATGAGGCAGAGCC-T-AA
* * * * **
3385732 GGTCAAAACTGACAAGCCGACTAAGGGTAAGAAAATCTCTAGGGTCAAAGTCGACAATTAGACTT
126 GGTCAAAGCTGACAAGCAGACTAAGGGTAAGAAAATCTCCAAGGTCAAAGTCGACAAGCAGACTT
* * * * *
3385797 GAGATAAGACCGTCTCCAAGGTCAAAGTCGACAGGTAGACTAAAGGTAAGAAAGTCTCCATGGTA
191 GAGATAAGACAGTCTCCAAGGTCAAAGGCGACAGGCAGACTAAAGGTAAGAAAATCTCCAGGGTA
* * * * * * * * * * *
3385862 AAAGTCGATAGGCAGACTTAAGGTGA-GCTAAAGTCAAAGCCGATAGGTAGACTTGAGGGAAAGA
256 AAAGCCAACAAGCACACTTAAGGTGAGGC-AAAGCCAAAGCCGATAGGCAAACATGAAGCAAAGA
* * * * *
3385926 AAGTCTCTAGGGTCCAAGCTGATAGGCAGACTTGAGGTGAGGCAATCTCTAGGGTCAAAG-CAAA
320 AAGTCTCAAAGGTCAAAGCTGATAGGCAGACTTAAGGTGAGGCAATCTCTAGGATCAAAGTC-AA
* * ** *
3385990 CAGGCAAACTTG-GGGAAAGAACA-TCTCTAGGGCCAAAGTTGACCGGCAAACTTAAGGTGAGGT
384 CAGGCAAAC-TGAGGGAAAGAA-AGTCTCGAAGGCCAAAGTCAACAGGCAAACTTAAGGTGAGGT
* * * * * *
3386053 AGTCTCTAGGGTCAATGCCGAGAGGCAGACTAATG-GTAAGAAAGTCTTAAGG
447 AGTCTCTAAGGTCAAAGCCGACAAGCAGACTAA-GAGTAAAAAAGTCTTAAGC
* * * *
3386105 GTTAAAGTCGATAGGCAGACTTGAGATGAGGTAGTCTTTAGGGTCAAAGCCGACAGGCAGATTGA
1 GTCAAAGTCGATAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGA
* ** * * *
3386170 AGGTAAGAAAGTCTCCAAGGTCAAAACCAATAAGCTGATTTGAGATGAGGCAGAGCCTAAGGTCA
66 AGGTAAGAAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTGAGATGAGGCAGAGCCTAAGGTCA
** * * * ** * *
3386235 AAGCTGACCGGCAGACT-TGAGGTTAGGATGTCT-CAATGGTCAAAGCCGAC-AGACA-AATTGA
131 AAGCTGACAAGCAGACTAAG-GGTAAGAAAATCTCCAA-GGTCAAAGTCGACAAG-CAGACTTGA
* * * * * * * * * *
3386296 TGGTAAGAAAGTCTCTAGGGTCAAA-GCTGACGGGCAGACTTAAGGTAAGAAAGTCTCTAGAGTC
193 -GATAAGACAGTCTCCAAGGTCAAAGGC-GACAGGCAGACTAAAGGTAAGAAAATCTCCAGGGTA
3386360 AAAGCCAACA
256 AAAGCCAACA
3386370 GGCAGGCTTG
Statistics
Matches: 596, Mismatches: 143, Indels: 47
0.76 0.18 0.06
Matches are distributed among these distances:
495 1 0.00
496 2 0.00
497 31 0.05
498 548 0.92
499 10 0.02
500 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (498 bp):
GTCAAAGTCGATAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGA
AGGTAAGAAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTGAGATGAGGCAGAGCCTAAGGTCA
AAGCTGACAAGCAGACTAAGGGTAAGAAAATCTCCAAGGTCAAAGTCGACAAGCAGACTTGAGAT
AAGACAGTCTCCAAGGTCAAAGGCGACAGGCAGACTAAAGGTAAGAAAATCTCCAGGGTAAAAGC
CAACAAGCACACTTAAGGTGAGGCAAAGCCAAAGCCGATAGGCAAACATGAAGCAAAGAAAGTCT
CAAAGGTCAAAGCTGATAGGCAGACTTAAGGTGAGGCAATCTCTAGGATCAAAGTCAACAGGCAA
ACTGAGGGAAAGAAAGTCTCGAAGGCCAAAGTCAACAGGCAAACTTAAGGTGAGGTAGTCTCTAA
GGTCAAAGCCGACAAGCAGACTAAGAGTAAAAAAGTCTTAAGC
Found at i:3386773 original size:42 final size:42
Alignment explanation
Indices: 3386724--3393159 Score: 885
Period size: 42 Copynumber: 154.2 Consensus size: 42
3386714 TGTCTTTAGT
* * * *
3386724 GTCAAAGTCGATAGGTAAACTTGAGGTGAGGCAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
*
3386766 GTCAAAGTCGACAGGCAGACTT-AGG-GTAAGAAGGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGGAA-GTCTCCAAG
* * * * *
3386808 GTCATAGTCGACAGGCCGACTTGAGGTAAGGCAGTCTCAAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3386850 GT-AAATGCCGAGAGGTAGAC-TAAGGGTAAGAAAGTCTCTAGG
1 GTCAAA-GTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * *
3386892 GTCCAAGTCGATAAGCAGACTTGAGGTGAGGTAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * **
3386934 GTCAAAGTCGACAAGCAAAC-TGAGG-GTAGGAAAGTTTTGAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGG-AAGTCTCCAAG
* * * * * * * *
3386976 GTCAAA-ACCATTAAGCAAACATGAGATGAGGCAATTC-CCAAG
1 GTCAAAGTCGA-CAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * * ** * *
3387018 GTCAACG-CTGAC-TGCAAACTTGAGGCT-AGGCTGTCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTTGAGG-TGAGGAAGTCTCCAAG
* * * * ** *
3387059 GTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAAAGTCTATATG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * * * *
3387101 GTCAAAGCCGACAAGCAGACTTGAGGTAAGGTAA-CCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * * * * *
3387143 GTCAAAGTCGAAAGGCAGATTTGTGCTGAGGCAGTCTCTAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * ** * * * *
3387185 GTCAAAGTCGATAGGCAAACTAAAGGTAAGAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3387227 GTTAAAGCCGACAAGCAAAC-TGAAGGTAAGAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * ** * *
3387269 GTCAAAGCCGACAAGCAGACTTGAGGTGAGTTACTCTCAAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * *
3387311 GTCAAAGCCGAAAGGCGGACTTGTGTTGAGGCTA-TCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
** * * * *
3387353 GTCAAAGTTAACAAGCCGAC-TGAGG-GTAGGAAAGTCTCTACG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGG-AAGTCTCCAAG
* * * * * *
3387395 GTCAAAGTCGAGAGGCAAACTTGAGATGAGGCAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * ** *
3387437 GTTAAAGCCGATAGACAGA-TTGAGGGTAAGAAAATCTTTAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * *
3387479 GTCAAAG-CTGACCGGTAGACTTGAGATGA-GATAGTCTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGA-AGTCTCCAAG
* * * * * *
3387521 GCCAAAGCCGAAAGGCAAAC-TGAGG-GTAAGAAGGTCTCTAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGGAA-GTCTCCAAG
* * * * *
3387563 GTCAAAGCCAACAGGCAGA-TTTAGG-GTAAGAATGTCTCCAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGGAA-GTCTCCAAG
* * * * * *
3387605 GTCAAAGTTGATAAGCTGACTTGAGGTGAGGCAGTCTCAAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* ** * * ***
3387647 GT-AAATGCCGAGTGGCAGAC-TGAGAGTAAGAAAGTCTCTTGG
1 GTCAAA-GTCGACAGGCAGACTTGAG-GTGAGGAAGTCTCCAAG
* * * * * * * * *
3387689 GTTAAAGCCGACAAGTAAACTTAAGGTGAGGTAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* *
3387731 GTCAAAGTCGACAAGCAGAC-TGAGG-GTAGGAAAGTTTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGG-AAGTCTCCAAG
* * * * * * * *
3387773 GTCAAA-ACCACTAGGCAAACATGAGAT-ATGGTAGT-TCTTAGG
1 GTCAAAGTCGAC-AGGCAGACTTGAGGTGA-GGAAGTCTC-CAAG
* ** ** * *
3387815 GTCAACG-CTGATTGG-AGACTTGAGGCT-AGGCTGTCTCGAGG
1 GTCAAAGTC-GACAGGCAGACTTGAGG-TGAGGAAGTCTCCAAG
* * * * * *
3387856 GTCAAAGTCGATAGGCA-AGC-TGAACGTAAGAAAGTCTCTATG
1 GTCAAAGTCGACAGGCAGA-CTTG-AGGTGAGGAAGTCTCCAAG
* * * * * * *
3387898 GTCAAAGTCAAGAGGTAGACTTAAGGTGAGGTAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3387940 GTCAAAG-CTGAAAGGCAGATTTGTGCTCAGGCAGTCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * *
3387982 GTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * * **
3388024 GTCAAAGCCGAAAGGCAGACTTGTGTTGAGGCTGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * ** *
3388066 GTCAAAGTCAACAGACAGAC-TAAGGGTAAGAAAGTCTATAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * *
3388108 GTCAAAG-CTGAGAGGTAGACTT-AGGATGAGGTAA-TCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTTGAGG-TGAGG-AAGTCTCCAAG
* * * * * **
3388150 GTCAAAGCCGATAGGCAGA-TTGAGGGTAAGAAAATCTCTTAG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* *
3388192 GTCAAAGTCGACA-GCTAGA-TTAGAGGTGAGGCAA-TCTCTAGG
1 GTCAAAGTCGACAGGC-AGACTT-GAGGTGAGG-AAGTCTCCAAG
* * * * * *
3388234 GTCAAAGTCGAAAGGCATG-CTAGGGGTAAGAAAGTCTCTAAG
1 GTCAAAGTCGACAGGCA-GACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * **
3388276 GTCAAAGCCAATAGGCAGACTTGAGATGAGGTAGTCTCTATT
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3388318 GTCAAAGCCAACAGTCA-AATTGATGGTAAGAAAATCTCCAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * **
3388360 GTCAAAGCCGACAGGTAGACTTGAAATGA-GACAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGA-AGTCTCCAAG
* * * ** * *
3388402 GTCAAAGCCGATAGGCATAC-TGAAAATAAGAAAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * * * *
3388444 GTCAAAGCCGGCAGGTAGACTTGA---G-GCAAG-GT--AGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * ** *
3388479 GTCAAAGTTGATAGGTAGACTTGAGGGTAAGAAAATCTTTAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * * *
3388522 GTCAAAGCCAATACGCAGACTTAAGATAAGGCAA-TCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * * * * *
3388564 GTCAAAGCCGATAAGCAGACTT-AGG-GTAAGAAGGTCTTCAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGGAA-GTCTCCAAG
* * * *
3388606 GTCAAAGTCGACAAGTAGACTTGAGGTGAGCCAA-TCTCAAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAG-GAAGTCTCCAAG
* * * * * ** ** *
3388648 GTCAATGCCGAGAGGCAAAC-TGAGGGTAACAAAGTCTGTATG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* ** * * * * * *
3388690 GTCAAAGCCGACATACAGATTTAAGATGAGGTAGT-TTCTAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * ** * *
3388731 TGTCAAAGCCGGCAGGGAGAC-TGAGGGTAAAAAAGTTTCCAGG
1 -GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
** * * * * * ** * *
3388774 GTCAAAACCAATAAGCAGACATGAGATGACTCAA-TTTTCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGA-GGAAGTCTCCAAG
* * * * * * **
3388816 GTTAAAG-CTGTCTGGCAAACTTAAGGTTAGGCTGTCTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * ** * *
3388858 GTCAAAGCCGACAGGCAGAC-TGAGGGTAAAAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
** * * * * * *
3388900 GTCAAAACCAACAGGCAGACTTGAGATAAGGTAGTTTGCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * *
3388942 GTCAAAG-CTGACAAGCAGACTTGAGGTTAGGCTA-TCTCCAGG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * ** * * *
3388984 GTCAAAG-CTGACCGGTAGACTAAAGGTAAGAAAGTCTCTAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * ** *
3389026 GTTAAAGCCAACAGGCAGAC-TGAAGGTAAGAAAGTGTTTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * ** * *
3389068 GTCAAAGCCGACAAGCAGACTTGAGGTGAGTTACTCTCCAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * *
3389110 GTCAAAGCCGAAAGCCAGACTTGTGTTGAGGCTA-TCTCCAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* ** ** * * *
3389152 GTTAAAGTTAACAAACTGA-TTGAGG-GTAGGAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGG-AAGTCTCCAAG
* * * * * * ** *
3389194 GTCAAAGTCAAGAGGTAAACTTGAGATGAAGCGGTCT-CTAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * ***
3389235 GTTTACAA-CCGACAGACAGA-TTGAGGGTAAGAAAATCTTTGAG
1 G-TCA-AAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * *
3389278 GTCAAAGTTGACCGGTAGACTTGAGATGA-GATAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGA-AGTCTCCAAG
* * * * * * ** *
3389320 G-CTAAAGCCGAAAGGCAGAC-TGAGGGTAAGAAAATATTTAGG
1 GTC-AAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * ** * * *
3389362 GTCAAAGCCGACAAGCAGACTTGAGGTGAGTTACTCTTCAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3389404 GTCAAAGCCGAAAGCCAAACTT-ATGTTGAGGATGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * *
3389446 GTCAAAGTCGACAGGTAGAC-CGA-GTGCAGAAAAGTCTCTAAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AG-GAAGTCTCCAA-G
* * * * *
3389489 GT-AAAGTCGAGAGGCAGACTTGAGATGAGGTAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * *
3389530 GTCGAAACT-GACAAGCA-AATTGAAGGTAAGAAAGTCTCCTAG
1 GTC-AAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * * * *
3389572 GCCAAAATCGATAGGCAGACTAGAGGTGAGGCAGTCTCCAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3389614 GTTAAAGCCGAAAGACAGAC-TAAGGGTAAGAAAGTCTCTAAG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * *
3389656 GTCAAAGCCAACGGGCAGACTTGAGATGAGGCAA-TC-CTAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* ** * ** * * *
3389697 GTCAAA-ACTGACAAACAGAC-TGATGGTAATAAAATCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * *
3389739 GTCAAAATCGACAGGTAGACTTGAGTTGA-GATAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGA-AGTCTCCAAG
* * ** * * * ***
3389781 GTCAAAGTCGATAGGTAGACTAAAGATAAGAAAGTCTCTGGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * *
3389823 GTAAAAGTTGATAGGCAGACTTAAGGTGA-G--G----CAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * ** * *
3389858 GTCAAAG-CTGATAGGTAGACTTGAAGGTAAAAAAGTCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * *
3389901 GTCAAAATCGACAGGTAGACTTGAGGTGAGGCAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
** * *
3389943 GTCAAAG-CTGATGGGCAAACTT-AGG-GTAAGAAGGTCTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTG-AGGAA-GTCTCCAAG
* *
3389985 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGTAGTCTCAAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3390027 GTCAATGTTGAGAGGCAGAC-TGAGGGTAAGAAAGCCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * * ** *
3390069 GTCAAAGTCAATAGGCAGACTTAAGATAAGGTAGTCTTTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * *
3390111 GTCAAAG-CTAACAGGTAGAC-TGAGG-GTAGGAAAGTTTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTG-AGG-AAGTCTCCAAG
** * ** * * * *
3390153 GTCAAAACCAACTTGCAGACATGAGATAAGGCAA-T-TCCTAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * **
3390194 TGTCAAAG-CTAACTA-GCAGACTTGAGGTTAGGCTGTCTCCAAG
1 -GTCAAAGTC-GAC-AGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * ** * *
3390237 GTCCAAGCCGACATACAGAC-TGAAGGT-ATGAAAGTCTCTAAG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGA-GGAAGTCTCCAAG
* * * * * *
3390279 GTAAAAAGT-GATAGGCAGACTTGAGATGAGGTAGTCTCTAGG
1 GT-CAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * *
3390321 GTAAAAG-CTGA-AGGGTAGACTT-ATGTTGAGGTAGTCTCCAAGG
1 GTCAAAGTC-GACA-GGCAGACTTGA-GGTGAGGAAGTCTCCAA-G
* * * * * * *
3390364 GTCAAAGCCAATAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
** * * * * * *
3390406 GTCAAAACCGATAGGCAGACTGGAGATGATGCAGTCT-TAAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAA-G
* * *
3390448 GTCAAAGTCGACAGGCAGAC-TGAGG-GTAGGAAAGCCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGG-AAGTCTCCAAG
* ** * * *
3390490 GTCAAAGTTGACAGATAGACTTGAGATGAGGAAGTCTACAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * *
3390532 GTCAAAG-CTGATAGGCACAC-TAAGTGTAAGAAAATCTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAG-GTGAGGAAGTCTCCAAG
* * * * * ***
3390574 GCCAAAGTTGACAGACAGACTTGAGGTGAGGCACTCTTTGAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* ** * *
3390616 GTCAAAG-CTGATAGGCAGAC-AAAAGT-AAGAAGGTCTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAA-GTCTCCAAG
* * * *
3390657 GTTAAAGCCGACAGGTAGACTTAAGGTGA-G--GT-T----G
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * *
3390691 TGTCAAAGCCAATAGGCAGACTTAAGATGAGGCAA-TCTCTAGG
1 -GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * * * *
3390734 GCCAAAGTCGATAGGCAGAC-TAAGGGTAAGAAAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * * *
3390776 ATCAGAG-CTAACAAGTAGACTTGAGATGAGGTAGTCTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * ***
3390818 GTCAAAGCCGACAGGTAAAC-TGAGG-GTAGAAAAGT-TTTTAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AG-GAAGTCTCCAAG
* ** * * * * * *
3390859 GGCAAAACCAATAGACAAACTTGAGATGAGGCAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * ** *
3390901 GTCAAAG-CTGATAGGTAAACTTGAGGTTAGGTTGTCTACAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * *
3390943 GTCGAAGCCAACAGGCAGA-TTGAAGGCT-AGAAAGTTTCTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGG-TGAGGAAGTCTCCAAG
* * * * * * *
3390985 GTCAAAGCCAACAAGCAGACTTGAGGTGAAGTAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * *
3391027 GTCAAAGCCTAAAGGCAGACTTGCGTTGAGGTAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * ** *
3391069 GTCAAAG-CTGACAGGCAAACTTGAGGTTAGGTTGTCTACAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * *
3391111 GTCGAAGCCAACAGGCAGA-TTGAAGGCT-AGAAAGTTTCTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGG-TGAGGAAGTCTCCAAG
* * * * * *
3391153 GTCAAAGCCGACAAGCAGACTTGAGGTGAAGTAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * *
3391195 GTCAAAGCCTAAAGGCAGACTTGCGTTGAGGTAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3391237 GTCAAAGTTGACAGGTAGACTTAAGGTAAGAAAATCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* ** * *
3391279 GTCAAAG-CTGACAGGCAGACTTGAGATGAGGTTGTCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * *
3391321 GTCAAAGTCGATAGGTAAAC-TAAGAGT-AGGAATGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAG-GTGAGGAA-GTCTCCAAG
* * * * *
3391363 GTCAAAGTCGACAGACAGACTTAAGATGAGGCAGTCTCAAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * *
3391405 GTCAAAGCCAACAGGCAAAC-TGA-GTGTATGAATGTCTCCATG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGGAA-GTCTCCAAG
* ** * * ** ** *
3391447 GTCAAAG-CTGACAGGTAGACTAAAAGTAAAAAAGTCTTTAGG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * *
3391489 GCCAAAGCCGATAGGCAGACTTGAGGT----AAGGCT-C--G
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * *
3391524 GTCAAAGCCAATAGGCATACTTGAGATGAGGCAA-TCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * * * * *
3391566 GTCAAAGTCGATAGGTAAAC-TAAGG-GTACGAAAGTCT-CAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-A-GGAAGTCTCCAAG
* ** * *
3391607 GTCAAAG-CTGACAAGCAGACTTGAAATGATGCAA-TCTCTAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGA-GGAAGTCTCCAAG
* * * * * *
3391649 GTTAAAG-CTGACATGCAGACTT-AGGGTAAGAAAGCCTCTAAG
1 GTCAAAGTC-GACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * *
3391691 GTCAAAGTTGATAGGCAGAATTGAGATGAGGCAGTCTCAAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * *
3391733 GTCAAAGTCAATAGGCAGAC-TGAAGGTAAGAAAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * *
3391775 GTTAAAGCCGACAGGCAAACTTGAGGTGA-G--G----CAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * ** * *
3391810 GTTAAAGCCAACAGGAAAACTTGAAAGTAAAAAAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * *
3391853 GTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCCAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * *
3391895 GTCAAAGTCGATAGGGAGAC-TGAGGGTAAGAAAGACTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * * * *
3391937 GTCAATGCCAACAGGCAAACTTAAGGTGAGGTAGTCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3391979 GTTAAAGCCAACAAGCAGAC-TGAGGGTAAGAAAGTCTTCAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * * *
3392021 GTCAAAGCCAACTGGGAGACTTGAGATAAGGCAGTCT-CAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
** * * * * ** *
3392062 GTCAAAAACAACAAGTAAAC-TGAGG-GTAAAAAGTCT-TAAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTG-AGGAAGTCTCCAA-G
*** * * * * * ** *
3392103 GTCGTGGCCTATAGGCAGACTTGAGGTGAGGCAGCCTTGAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * ** * * *
3392145 GTCAAAGCCGACAAGCAAAC-TGAGGGTAAAAAAATCTTCAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * *
3392187 GTCAAAG-CTGATAGGTATACTTAAGAT-AAGACAGTCTCCAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGA-AGTCTCCAAG
* * * * * *** *
3392229 GTCAAAGTCAATAGGTAGAC-TGAAGGTAAGAAAGTCGATAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * ** *
3392271 GTCAAAGCCAACATGCAGACTAAAGGT-AGGAAAGTTTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * ** * * * * *
3392313 TTTAAAACCAACAAGCAGACTTGAGATGAGGTAGTCCCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * *
3392355 GTTAAAGTTGACAAGCAGACTTGAGGTTAGGCTA-TCTACACG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * ** * * ** *
3392397 GT-AGAAGCCGACAAGCAGA-TAAAAGGTAAGAAAGTCTGTAGG
1 GTCA-AAGTCGACAGGCAGACT-TGAGGTGAGGAAGTCTCCAAG
* * * *
3392439 GTCAAAGACGGCAGGCAGACTTGAGGTGAGGTAA-TCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * * * ** * * * *
3392481 GTCAAAGCCAAAAGGCAAACTTCTGTTAAGGCAGTCT-CTAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * *
3392522 CGTCAATGTCGATAGGCAGAC-TGAAGGTAAGAAAATCTCTAGG
1 -GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * * * *
3392565 GTCAAAGTCGATAAGTAGACTTGAGATGAGGTTA-TCTCCATG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGG-AAGTCTCCAAG
* * * * *
3392607 GTCAAAGTCAACATGTAGAC-TAAGAGTGAGAAAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAG-GTGAGGAAGTCTCCAAG
* ** * * *
3392649 GTCAAAGTCGATAAACAGACTTGAGATGAGGCAGTCTTCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * ** * *
3392691 GTCAAAG-CTGACAGGCAGAC-TGAAAGTAAAAAAGTCTCTAGG
1 GTCAAAGTC-GACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * * * ** * * *
3392733 GTCAAAGCCGATAGGCAAAC-TGAAAGTAAAAAAGCCTCTAGG
1 GTCAAAGTCGACAGGCAGACTTG-AGGTGAGGAAGTCTCCAAG
* * * * * *
3392775 GTCAAAGCCGATAAGCAAACTTAAGGTGAGGTAGTCTCCAAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * *
3392817 GAT-AAAG-CTGACAGGTACAC-TAAGGGTGAGAAAGTCTCCAAG
1 G-TCAAAGTC-GACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * * * * *
3392859 TTCAAAGCCAACAGGCTGACTTAAGGTGTGGTAGTCT-CTAG
1 GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * * * * *
3392900 AGTCAAAGCCAACACGCA-AATTAAGGGTAAGAAAGTCTCCAGG
1 -GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* * * * *
3392943 GTCAAAGTCGACTA-GCAAACTTAAGATGAGGTAG-CTTCCAGG
1 GTCAAAGTCGAC-AGGCAGACTTGAGGTGAGGAAGTC-TCCAAG
** * ** * * *
3392985 GTTGAAGCCGACAAACAGGC-TGAGGGTAAGAAAGTCT-CAAGG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAA-G
* * * * **
3393027 GTCAAAG-CTGACAAGCAGACTTGAGGTAAGGTAGCCTTGAAG
1 GTCAAAGTC-GACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
* * * * *
3393069 GTCAAAGTCGACAGGCACAC-TGAGGGTAAGAAAATCTCTAAG
1 GTCAAAGTCGACAGGCAGACTTGA-GGTGAGGAAGTCTCCAAG
* *
3393111 GTCAAA-ACTGACTAGG-AGACTTGAGATGAGGTAA-TCT-CAAGG
1 GTCAAAGTC-GAC-AGGCAGACTTGAGGTGAGG-AAGTCTCCAA-G
3393153 GTCAAAG
1 GTCAAAG
3393160 CCAACAAGCA
Statistics
Matches: 4583, Mismatches: 1446, Indels: 729
0.68 0.21 0.11
Matches are distributed among these distances:
34 1 0.00
35 114 0.02
36 10 0.00
37 1 0.00
38 11 0.00
39 9 0.00
40 45 0.01
41 454 0.10
42 3536 0.77
43 385 0.08
44 17 0.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (42 bp):
GTCAAAGTCGACAGGCAGACTTGAGGTGAGGAAGTCTCCAAG
Found at i:3388044 original size:126 final size:126
Alignment explanation
Indices: 3386756--3392067 Score: 1112
Period size: 126 Copynumber: 42.5 Consensus size: 126
3386746 GAGGTGAGGC
* * * * * * *
3386756 AGTCTCCAAGGTCAAAGTCGACAGGCAGACTT-AGG-GTAAGAAGGTCTCCAAGGTCATAG-TCG
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTG-AGGTA-GTCTCTAAGGTCAAAGCT-G
* * * * * * * *
3386818 ACAGGCCGACTTGAGGTAAGGCAGTCTCAAAGGT-AAATGCCGAGAGGTAGACT-AAGGGTAAGA
63 AAAGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAA-GCCGACAAGCAGACTGAA-GGTAAGA
3386881 A
126 A
* * * *
3386882 AGTCTCTAGGGTCCAAGTCGATAA-GCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAG-TCGA
1 AGTCTCTAAGGTCAAAGCCGA-AAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCT-GA
* * * * * * *
3386945 CAA-GCAAAC-TGAGGGT-AGGAAAGT-TTTGAAGGTCAAAACC-ATTAAGCAAACATG-AGATG
64 -AAGGCAGACTTGA-GGTAAGG-AAGTCTCT-AGGGTCAAAGCCGA-CAAGCAGAC-TGAAGGT-
* *
3387004 AGGCA
122 AAGAA
* * * * ** * * *
3387009 ATTC-CCAAGGTCAACGCTG-ACTGCAAACTTGAGGCT-AGGCT-GTCTCTAGGGTCAAAGCCGA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGG-TGAGG-TAGTCTCTAAGGTCAAAGCTGA
* * *
3387070 CAA-GCAGAC-TGAAGGTAAGAAAGTCTATATGGTCAAAGCCGACAAGCAGACTTG-AGGTAAGG
64 -AAGGCAGACTTG-AGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAA-G
*
3387132 TA
125 AA
* * * * * * * *
3387134 A-CCTCTAGGGTCAAAGTCGAAAGGCAGATTTGTGCTGAGGCAGTCTCTAAGGTCAAAG-TCGAT
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCT-GAA
* ** * * *
3387197 AGGCAAACTAAAGGTAAGAAAGTCTCTAGGGTTAAAGCCGACAAGCAAACTGAAGGTAAGAA
65 AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * *
3387259 AGTCTCTAGGGTCAAAGCCGACAA-GCAGACTTGAGGTGAGTTACTCTCAAAGGTCAAAGCCGAA
1 AGTCTCTAAGGTCAAAGCCGA-AAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * * * * *** * * *
3387323 AGGCGGACTTGTGTTGAGGCTA-TCTCCAAGGTCAAAGTTAACAAGCCGACTGAGGGTAGGAA
65 AGGCAGACTTGAGGTAAGG-AAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * * * * * *
3387385 AGTCTCTACGGTCAAAGTCGAGAGGCAAACTTGAGATGAGGCAGTCTCTAGGGTTAAAGCCGATA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAAA
* * * * * ** * * * *
3387450 GACAGA-TTGAGGGTAAGAAAATCTTTAGGGTCAAAGCTGACCGGTAGACTTG-AGATGAGAT
66 GGCAGACTTGA-GGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * * * * *
3387511 AGTCTCCAAGGCCAAAGCCGAAAGGCAAAC-TGAGG-GTAAGAAGGTCTCTAAGGTCAAAGC-CA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTG-AGGTA-GTCTCTAAGGTCAAAGCTGA
* * ** * * *
3387573 ACAGGCAGA-TTTAGGGTAA-GAATGTCTCCAGGGTCAAAGTTGATAAGCTGACTTG-AGGTGAG
64 A-AGGCAGACTTGA-GGTAAGGAA-GTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAG
**
3387635 GC
125 AA
* ** * ** ** * *
3387637 AGTCTCAAAGGT-AAATGCCGAGTGGCAGAC-TGAGAGTAAGAAAGTCTCTTGGGTTAAAGCCGA
1 AGTCTCTAAGGTCAAA-GCCGAAAGGCAGACTTGAG-GTGAGGTAGTCTCTAAGGTCAAAGCTGA
* * * * * * * *
3387700 CAA-GTAAACTTAAGGTGAGGTAGTCTCTAGGGTCAAAGTCGACAAGCAGACTGAGGGTAGGAA
64 -AAGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * * * * *
3387763 AGTTTCCAAGGTCAAAACC-ACTAGGCAAACATGAGAT-ATGGTAGT-TCTTAGGGTCAACGCTG
1 AGTCTCTAAGGTCAAAGCCGA-AAGGCAGACTTGAGGTGA-GGTAGTCTC-TAAGGTCAAAGCTG
** ** * * * * *
3387825 ATTGG-AGACTTGAGGCT-AGGCTGTCTCGAGGGTCAAAGTCGATAGGCA-AGCTGAACGTAAGA
63 AAAGGCAGACTTGAGG-TAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGA-CTGAAGGTAAGA
3387887 A
126 A
* * * * *
3387888 AGTCTCTATGGTCAAAGTC-AAGAGGTAGACTTAAGGTGAGGTAGTCTCTAGGGTCAAAGCTGAA
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * * *
3387952 AGGCAGATTTGTGCTCAGGCAGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAA
65 AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * *
3388014 AGTCTCTAGGGTCAAAGCCGAAAGGCAGACTTGTGTTGAGGCT-GTCTCCAAGGTCAAAG-TCAA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGG-TAGTCTCTAAGGTCAAAGCTGAA
* * * * * * * * * * *
3388077 CAGACAGAC-TAAGGGTAAGAAAGTCTATAGGGTCAAAGCTGAGAGGTAGACT-TAGGATGAGGT
65 -AGGCAGACTTGA-GGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGG-T-AAGA
3388140 A
126 A
* * * ** * *
3388141 A-TCTCTAGGGTCAAAGCCGATAGGCAGA-TTGAGGGTAAGAAAATCTCTTAGGTCAAAG-TCGA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGA-GGTGAGGTAGTCTCTAAGGTCAAAGCT-GA
* * * *
3388203 CA-GCTAGA-TTAGAGGTGAGGCAA-TCTCTAGGGTCAAAGTCGA-AAGGCATG-CT-AGGGGTA
64 AAGGC-AGACTT-GAGGTAAGG-AAGTCTCTAGGGTCAAAGCCGACAA-GCA-GACTGA-AGGTA
3388262 AGAA
123 AGAA
* ** *
3388266 AGTCTCTAAGGTCAAAGCC-AATAGGCAGACTTGAGATGAGGTAGTCTCTATTGTCAAAGC-CAA
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * * * * * * *
3388329 CAGTCA-AATTGATGGTAAGAAAATCTCCAGGGTCAAAGCCGACAGGTAGACTTGAA-ATGAGAC
65 -AGGCAGACTTGA-GGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * * ** * ** * * **
3388392 AGTCTCCAAGGTCAAAGCCGATAGGCATAC-TGAAAATAAGAAAGTCTCCAAGGTCAAAGCCGGC
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTG-AGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * ** * * * *
3388456 AGGTAGACTTGAGGCAA-G--G----TAGGGTCAAAGTTGATAGGTAGACTTGAGGGTAAGAA
65 AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * * * * * * * * * *
3388512 AATCTTTAGGGTCAAAGCC-AATACGCAGACTTAAGATAAGGCAATCTCCAAGGTCAAAGCCGAT
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGA-
* * *
3388576 AA-GCAGACTT-AGGGTAA-GAAGGTCT-TCAGGGTCAAAGTCGACAAGTAGACTTG-AGGTGAG
64 AAGGCAGACTTGA-GGTAAGGAA-GTCTCT-AGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAG
*
3388636 CCA
125 -AA
* * * * * *** * * * *
3388639 A-TCTCAAAGGTCAATGCCGAGAGGCAAAC-TGAGGGTAACAAAGTCTGTATGGTCAAAGCCGAC
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGA-GGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
** * * * * * * * * * * * *
3388702 ATACAGATTTAAGATGAGGTAGTTTCTAGTGTCAAAGCCGGCAGGGAGACTGAGGGTAAAAA
65 AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * * * * * * *
3388764 AGTTTCCAGGGTCAAAACC-AATAAGCAGACATGAGATGA-CTCAAT-TTTCAAGGTTAAAGCTG
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGT-AGTCTCT-AAGGTCAAAGCTG
*** * * * ** * * * * *
3388826 TCTGGCAAACTTAAGGTTAGGCTGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAAAAA
63 AAAGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * *
3388890 AGTCTCTAGGGTCAAAACC-AACAGGCAGACTTGAGATAAGGTAGTTTGC-AAGGTCAAAGCTGA
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCT-CTAAGGTCAAAGCTGA
* * * * ** * *
3388953 CAA-GCAGACTTGAGGTTAGGCTA-TCTCCAGGGTCAAAGCTGACCGGTAGACTAAAGGTAAGAA
64 -AAGGCAGACTTGAGGTAAGG-AAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * ** * * * *
3389016 AGTCTCTAAGGTTAAAGCC-AACAGGCAGAC-TGAAGGTAAGAAAGTGTTTAGGGTCAAAGCCGA
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTG-AGGTGAGGTAGTCTCTAAGGTCAAAGCTGA
* ** * * * * *
3389079 CAA-GCAGACTTGAGGTGAGTTACTCTCCAGGGTCAAAGCCGA-AAGCCAGACTTG-TGTTGAGG
64 -AAGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAG-CAGAC-TGAAGGT-AAG
**
3389141 CT
125 AA
* * * ** ** * * * *
3389143 A-TCTCCAGGGTTAAAG-TTAACAAACTGA-TTGAGG-GTAGGAAAGTCTCTAGGGTCAAAG-TC
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTG-AGG-TAGTCTCTAAGGTCAAAGCTG
* * * * * * *
3389203 AAGAGGTAAACTTGAGATGAAGCG--GTCTCTAGGTTTACAA-CCGAC-AGACAGATTGAGGGTA
63 AA-AGGCAGACTTGAGGT-AAG-GAAGTCTCTAGGGTCA-AAGCCGACAAG-CAGACTGAAGGTA
3389264 AGAA
123 AGAA
* * * ** ** * * * * *
3389268 AATCTTTGAGGTCAAAGTTGACCGGTAGACTTGAGATGAGATAGTCTCCAAGG-CTAAAGCCGAA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTC-AAAGCTGAA
* * * * * **
3389332 AGGCAGAC-TGAGGGTAAGAAAATATTTAGGGTCAAAGCCGACAAGCAGACTTG-AGGTGAGTT
65 AGGCAGACTTGA-GGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * * * * *
3389394 ACTCT-TCAGGGTCAAAGCCGAAAGCCAAACTT-ATGTTGAGG-ATGTCTCTAGGGTCAAAG-TC
1 AGTCTCT-AAGGTCAAAGCCGAAAGGCAGACTTGA-GGTGAGGTA-GTCTCTAAGGTCAAAGCT-
* * * * * * * * * *
3389455 GACAGGTAGAC-CGA-GTGCAGAAAAGTCTCTAAGGGT-AAAGTCGAGAGGCAGACTTG-AGATG
62 GAAAGGCAGACTTGAGGT-AAG-GAAGTCTCT-AGGGTCAAAGCCGACAAGCAGAC-TGAAGGTA
**
3389516 AGGT
123 AGAA
* * * * ** * *
3389520 AGTCTCTAGGGTCGAAA-CTGACAA-GCA-AATTGAAGGTAAGAAAGTCTCCT-AGGCCAAA-AT
1 AGTCTCTAAGGTC-AAAGCCGA-AAGGCAGACTTG-AGGTGAGGTAGTCT-CTAAGGTCAAAGCT
* * * * * *
3389580 CGATAGGCAGACTAGAGGTGAGGCAGTCTCCAGGGTTAAAGCCGA-AAGACAGACT-AAGGGTAA
62 -GAAAGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAG-CAGACTGAA-GGTAA
3389643 GAA
124 GAA
* * * * *
3389646 AGTCTCTAAGGTCAAAGCC-AACGGGCAGACTTGAGATGAGGCAATC-CTAAGGTCAAAACTGAC
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGA-
* ** * ** * * * * *
3389709 AA-ACAGAC-TGATGGTAATAAAATCTCTAGGGTCAAAATCGACAGGTAGACTTG-AGTTGAGAT
64 AAGGCAGACTTGA-GGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * * * ** * * ** ** * * *
3389771 AGTCTCCAAGGTCAAAGTCGATAGGTAGACTAAAGATAAGAAAGTCTCTGGGGTAAAAGTTGATA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAAA
* * * * * * *
3389836 GGCAGACTTAAGGT---G-AG--GC-AGGGTCAAAGCTGATAGGTAGACTTGAAGGTAAAAA
66 GGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* ** * * * * **
3389891 AGTCTCTAGGGTCAAAATCGACAGGTAGACTTGAGGTGAGGCAGTCTCCAAGGTCAAAGCTGATG
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAAA
* * * * * * **
3389956 GGCAAACTT-AGGGTAA-GAAGGTCTCCAAGGTCAAAGTCGACAGGCAGACTTG-AGGTGAGGT
66 GGCAGACTTGA-GGTAAGGAA-GTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * ** * * ** * * *
3390017 AGTCTCAAAGGTCAATGTTGAGAGGCAGAC-TGAGGGTAAGAAAGCCTCTAGGGTCAAAG-TCAA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGA-GGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * ** * * * *
3390080 TAGGCAGACTTAAGATAAGGTAGTCTTTAGGGTCAAAGCTAACAGGTAGACTGAGGGTAGGAA
65 -AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * ** * * * * *
3390143 AGTTTCCAAGGTCAAAACC-AACTTGCAGACATGAGATAAGGCAAT-TCCT-AGTGTCAAAGCT-
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCT-CTAAG-GTCAAAGCTG
* ** * * * *
3390204 AACTA-GCAGACTTGAGGTTAGGCTGTCTCCAAGGTCCAAGCCGACATA-CAGACTGAAGGTATG
63 AA--AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACA-AGCAGACTGAAGGTAAG
3390267 AA
125 AA
* * * * * *
3390269 AGTCTCTAAGGTAAAAAG-TGATAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTAAAAGCTGAA
1 AGTCTCTAAGGT-CAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * * * * * *
3390333 GGGTAGACTT-ATGTTGAGGTAGTCTCCAAGGGTCAAAGCCAATAGGCAGACTGAAGGTAAGAA
65 AGGCAGACTTGA-GGTAAGGAAGTCT-CTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * * *
3390396 AGTCTCTAGGGTCAAAACCGATAGGCAGACTGGAGATGATGCAGTCT-TAAGGGTCAAAG-TCGA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAA-GGTCAAAGCT-GA
* * ** * * *
3390459 CAGGCAGAC-TGAGGGT-AGGAAAGCCTCTAGGGTCAAAGTTGAC-AGATAGACTTG-AGATGAG
64 AAGGCAGACTTGA-GGTAAGG-AAGTCTCTAGGGTCAAAGCCGACAAG-CAGAC-TGAAGGTAAG
*
3390520 GA
125 AA
* * * * * * ** * * * *
3390522 AGTCTAC-AGGGTCAAAGCTGATAGGCACAC-TAAGTGTAAGAAAATCTCCAAGGCCAAAGTTGA
1 AGTCT-CTAAGGTCAAAGCCGAAAGGCAGACTTGAG-GTGAGGTAGTCTCTAAGGTCAAAGCTGA
* * * * * * * * * * *
3390585 CAGACAGACTTGAGGTGAGGCACTCT-TTGAGGTCAAAGCTGATAGGCAGAC-AAAAGTAAGAA
64 AAGGCAGACTTGAGGTAAGGAAGTCTCTAG-GGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * * * *
3390647 GGTCTCCAAGGTTAAAGCCGACAGGTAGACTTAAGGTGA-G--GT-TGT---GTCAAAGC-CAAT
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA-
* * * * * * *
3390704 AGGCAGACTTAAGATGAGGCAA-TCTCTAGGGCCAAAGTCGATAGGCAGACT-AAGGGTAAGAA
65 AGGCAGACTTGAGGTAAGG-AAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAA-GGTAAGAA
* * * * * * * * * *
3390766 AGTCTCCAAGATCAGAG-CTAACAAGTAGACTTGAGATGAGGTAGTCTCCAAGGTCAAAGCCGAC
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * * * * * *
3390830 AGGTAAAC-TGAGGGT-AGAAAAGTTTTTAGGG-CAAAACC-A-ATAGACAAACTTG-AGATGAG
65 AGGCAGACTTGA-GGTAAG-GAAGTCTCTAGGGTCAAAGCCGACA-AG-CAGAC-TGAAGGTAAG
**
3390889 GC
125 AA
* * * * * * * * *
3390891 AGTCTCCAAGGTCAAAGCTGATAGGTAAACTTGAGGTTAGGTTGTCTAC-AAGGTCGAAGC-CAA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCT-CTAAGGTCAAAGCTGAA
* * *
3390954 CAGGCAGA-TTGAAGGCT-AGAAAGTTTCTAGGGTCAAAGCCAACAAGCAGACTTG-AGGTGAAG
65 -AGGCAGACTTG-AGG-TAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGT-AAG
*
3391016 -T
125 AA
* * * * * *
3391017 AGTCTCTAGGGTCAAAGCCTAAAGGCAGACTTGCGTTGAGGTAGTCTCCAAGGTCAAAGCTGACA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAAA
* * ** * * * * *
3391082 GGCAAACTTGAGGTTAGGTTGTCTAC-AAGGTCGAAGCCAACAGGCAGATTGAAGGCT-AGAA
66 GGCAGACTTGAGGTAAGGAAGTCT-CTAGGGTCAAAGCCGACAAGCAGACTGAAGG-TAAGAA
* * * *
3391143 AGTTTCTAGGGTCAAAGCCGACAA-GCAGACTTGAGGTGAAGTAGTCTCTAGGGTCAAAGCCT-A
1 AGTCTCTAAGGTCAAAGCCGA-AAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAG-CTGA
* * * * * * ** * * *
3391206 AAGGCAGACTTGCGTTGAGGTAGTCTCCAAGGTCAAAGTTGACAGGTAGACTTAAGGTAAGAA
64 AAGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * * * *
3391269 AATCTCTAGGGTCAAAGCTGACAGGCAGACTTGAGATGAGGTTGTCTCTAGGGTCAAAG-TCGAT
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCT-GAA
* * * * * * * * * **
3391333 AGGTAAAC-TAAGAGT-AGGAATGTCTCCAAGGTCAAAGTCGAC-AGACAGACTTAAGATGAGGC
65 AGGCAGACTTGAG-GTAAGGAA-GTCTCTAGGGTCAAAGCCGACAAG-CAGACTGAAGGTAAGAA
* * * * * *
3391395 AGTCTCAAAGGTCAAAGCC-AACAGGCAAAC-TGA-GTGTATGAATGTCTCCATGGTCAAAGCTG
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTG-AGGTA-GTCTCTAAGGTCAAAGCTG
* * ** * ** * * * *
3391457 ACAGGTAGACTAAAAGTAAAAAAGTCTTTAGGGCCAAAGCCGATAGGCAGACTTG-AGGTAAG--
63 AAAGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * * * *
3391519 -G-CTC---GGTCAAAGCC-AATAGGCATACTTGAGATGAGGCAATCTCTAGGGTCAAAG-TCGA
1 AGTCTCTAAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCT-GA
* * * * * * * * * *
3391577 TAGGTAAAC-TAAGGGTACGAAAGTCTC-AGGGTCAAAGCTGACAAGCAGACTTGAA-ATGATGC
64 AAGGCAGACTTGA-GGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGT-AAGA
3391639 A
126 A
* * * * * ** * * *
3391640 A-TCTCTAAGGTTAAAGCTGACATGCAGACTT-AGGGTAAGAAAGCCTCTAAGGTCAAAGTTGAT
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGA-GGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * * * * * * *
3391703 AGGCAGAATTGAGATGAGGCAGTCTCAAAGGTCAAAGTCAATAGGCAGACTGAAGGTAAGAA
65 AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * * *
3391765 AGTCTCCAAGGTTAAAGCCGACAGGCAAACTTGAGGTGA-G--G---C-AGGGTTAAAGC-CAAC
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAA-
* * * ** * **
3391822 AGGAAAACTTGAAAGTAAAAAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTTG-AGGTGAGGC
65 AGGCAGACTTG-AGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGAC-TGAAGGTAAGAA
* * * * * * ** * * * *
3391885 AGTCTCCAGGGTCAAAGTCGATAGGGAGAC-TGAGGGTAAGAAAGACTCCAAGGTCAATGC-CAA
1 AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGA-GGTGAGGTAGTCTCTAAGGTCAAAGCTGAA
* * * * * * *
3391948 CAGGCAAACTTAAGGTGAGGTAGTCTCTAGGGTTAAAGCCAACAAGCAGACTGAGGGTAAGAA
65 -AGGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
* * * * * *
3392011 AGTCT-TCAGGGTCAAAGCC-AACTGGGAGACTTGAGATAAGGCAGTCTC-AAGGTCAAA
1 AGTCTCT-AAGGTCAAAGCCGAA-AGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAA
3392068 AACAACAAGT
Statistics
Matches: 3775, Mismatches: 1078, Indels: 667
0.68 0.20 0.12
Matches are distributed among these distances:
117 1 0.00
118 74 0.02
119 159 0.04
120 197 0.05
121 7 0.00
122 11 0.00
123 7 0.00
124 22 0.01
125 597 0.16
126 2352 0.62
127 341 0.09
128 7 0.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (126 bp):
AGTCTCTAAGGTCAAAGCCGAAAGGCAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCTGAAA
GGCAGACTTGAGGTAAGGAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTGAAGGTAAGAA
Found at i:3388571 original size:162 final size:162
Alignment explanation
Indices: 3388337--3388631 Score: 376
Period size: 162 Copynumber: 1.8 Consensus size: 162
3388327 AACAGTCAAA
* * * * * *
3388337 TTGATGGTAAGAAAATCTCCAGGGTCAAAGCCGACAGGTAGACTTGAAATGAGACAGTCTCCAAG
1 TTGAGGGTAAGAAAATCTCCAGGGTCAAAGCCAACACGCAGACTTGAAATAAGACAATCTCCAAG
* * * *
3388402 GTCAAAGCCGATAGGCATACTGAAAATAAGAAAGTCTCCAAGGTCAAAGCCGGCAGGTAGACTTG
66 GTCAAAGCCGATAAGCAGACTGAAAATAAGAAAGTCTCCAAGGTCAAAGCCGACAAGTAGACTTG
3388467 AGGCAAGGTAGGGTCAAAGTTGATAGGTAGAC
131 AGGCAAGGTAGGGTCAAAGTTGATAGGTAGAC
** * *
3388499 TTGAGGGTAAGAAAATCTTTAGGGTCAAAGCCAATACGCAGACTT-AAGATAAGGCAATCTCCAA
1 TTGAGGGTAAGAAAATCTCCAGGGTCAAAGCCAACACGCAGACTTGAA-ATAAGACAATCTCCAA
* *** * * * *
3388563 GGTCAAAGCCGATAAGCAGACTTAGGGTAAGAAGGTCTTCAGGGTCAAAGTCGACAAGTAGACTT
65 GGTCAAAGCCGATAAGCAGACTGAAAATAAGAAAGTCTCCAAGGTCAAAGCCGACAAGTAGACTT
3388628 GAGG
130 GAGG
3388632 TGAGCCAATC
Statistics
Matches: 110, Mismatches: 22, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
161 2 0.02
162 108 0.98
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (162 bp):
TTGAGGGTAAGAAAATCTCCAGGGTCAAAGCCAACACGCAGACTTGAAATAAGACAATCTCCAAG
GTCAAAGCCGATAAGCAGACTGAAAATAAGAAAGTCTCCAAGGTCAAAGCCGACAAGTAGACTTG
AGGCAAGGTAGGGTCAAAGTTGATAGGTAGAC
Found at i:3388695 original size:246 final size:246
Alignment explanation
Indices: 3388257--3388699 Score: 541
Period size: 246 Copynumber: 1.8 Consensus size: 246
3388247 GGCATGCTAG
* * * * * * * **
3388257 GGGTAAGAAAGTCTCTAAGGTCAAAGCCAATAGGCAGACTTGAGATGAGGTAGTCTCTATTGTCA
1 GGGTAAGAAAATCTCTAAGGTCAAAGCCAATACGCAGACTTAAGATAAGGCAATCTCCAAGGTCA
* *
3388322 AAGCCAACAGTCAAATTGATGGTAAGAAAATCTCCAGGGTCAAAGCCGACAGGTAGACTTGAAAT
66 AAGCCAACAGTCAAATTGAGGGTAAGAAAATCTCCAGGGTCAAAGCCGACAAGTAGACTTGAAAT
* * * * *
3388387 GAGACAGTCTCCAAGGTCAAAGCCGATAGGCATACTGAAAATAAGAAAGTCTCCAAGGTCAAAGC
131 GAGACAATCTCAAAGGTCAAAGCCGAGAGGCAAACTGAAAATAACAAAGTCTCCAAGGTCAAAGC
3388452 CGGCAGGTAGACTTGAGGCAAGGTAGGGTCAAAGTTGATAGGTAGACTTGA
196 CGGCAGGTAGACTTGAGGCAAGGTAGGGTCAAAGTTGATAGGTAGACTTGA
* *
3388503 GGGTAAGAAAATCTTTAGGGTCAAAGCCAATACGCAGACTTAAGATAAGGCAATCTCCAAGGTCA
1 GGGTAAGAAAATCTCTAAGGTCAAAGCCAATACGCAGACTTAAGATAAGGCAATCTCCAAGGTCA
* ** * *
3388568 AAGCCGATA-AG-CAGACTT-AGGGTAAGAAGGTCTTCAGGGTCAAAGTCGACAAGTAGACTTGA
66 AAGCC-A-ACAGTCA-AATTGAGGGTAAGAAAATCTCCAGGGTCAAAGCCGACAAGTAGACTTGA
** * * *** ** *
3388630 GGTGAGCCAATCTCAAAGGTCAATGCCGAGAGGCAAACTGAGGGTAACAAAGTCTGTATGGTCAA
128 AATGAGACAATCTCAAAGGTCAAAGCCGAGAGGCAAACTGAAAATAACAAAGTCTCCAAGGTCAA
3388695 AGCCG
193 AGCCG
3388700 ACATACAGAT
Statistics
Matches: 161, Mismatches: 33, Indels: 6
0.81 0.17 0.03
Matches are distributed among these distances:
246 154 0.96
247 6 0.04
248 1 0.01
ACGTcount: A:0.36, C:0.18, G:0.27, T:0.19
Consensus pattern (246 bp):
GGGTAAGAAAATCTCTAAGGTCAAAGCCAATACGCAGACTTAAGATAAGGCAATCTCCAAGGTCA
AAGCCAACAGTCAAATTGAGGGTAAGAAAATCTCCAGGGTCAAAGCCGACAAGTAGACTTGAAAT
GAGACAATCTCAAAGGTCAAAGCCGAGAGGCAAACTGAAAATAACAAAGTCTCCAAGGTCAAAGC
CGGCAGGTAGACTTGAGGCAAGGTAGGGTCAAAGTTGATAGGTAGACTTGA
Found at i:3390003 original size:162 final size:164
Alignment explanation
Indices: 3389476--3390015 Score: 511
Period size: 167 Copynumber: 3.3 Consensus size: 164
3389466 CGAGTGCAGA
* * * *
3389476 AAAGTCTCTAAGGGT-AAAGTCGAGAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTCGAAACTG
1 AAAGTCTCTAA-GGTCAAAGTCGACAGGCAGACTTGAGGTGAGG-A----CTAAGGTCAAAACTG
* * * * * * *
3389540 ACAAGCA-AATTGAAGGTAAGAAAGTCTCCTA-GGCCAAAATCGATAGGCAGACTAGAGGTGAGG
60 ACAAACAGACTTGAAGGTAAAAAAGTCT-CTAGGGTCAAAATCGACAGGTAGACTTGAGGTGAGG
* * * * *
3389603 CAGTCTCCAGGGTTAAAGCCGAAAGACAGACTAAGGGTAAG
124 CAGTCTCCAAGGTCAAAGCTGATAGGCAGACTAAGGGTAAG
* * * *
3389644 AAAGTCTCTAAGGTCAAAGCCAACGGGCAGACTTGAGATGAGGCAATCCTAAGGTCAAAACTGAC
1 AAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGG--A--CTAAGGTCAAAACTGAC
* * **
3389709 AAACAGAC-TGATGGTAATAAAA-TCTCTAGGGTCAAAATCGACAGGTAGACTTGAGTTGAGATA
62 AAACAGACTTGAAGGTAA-AAAAGTCTCTAGGGTCAAAATCGACAGGTAGACTTGAGGTGAGGCA
* * *
3389772 GTCTCCAAGGTCAAAG-TCGATAGGTAGACTAAAGATAAG
126 GTCTCCAAGGTCAAAGCT-GATAGGCAGACTAAGGGTAAG
** * * * * * * * ***
3389811 AAAGTCTCTGGGGTAAAAGTTGATAGGCAGACTTAAGGTGAGG-C-AGGGTCAAAGCTGATAGGT
1 AAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGACTAAGGTCAAAACTGACAAAC
3389874 AGACTTGAAGGTAAAAAAGTCTCTAGGGTCAAAATCGACAGGTAGACTTGAGGTGAGGCAGTCTC
66 AGACTTGAAGGTAAAAAAGTCTCTAGGGTCAAAATCGACAGGTAGACTTGAGGTGAGGCAGTCTC
* * *
3389939 CAAGGTCAAAGCTGATGGGCAAACTTAGGGTAAG
131 CAAGGTCAAAGCTGATAGGCAGACTAAGGGTAAG
* *
3389973 AAGGTCTCCAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGG
1 AAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGG
3390016 TAGTCTCAAA
Statistics
Matches: 301, Mismatches: 62, Indels: 24
0.78 0.16 0.06
Matches are distributed among these distances:
161 21 0.07
162 113 0.38
163 1 0.00
166 3 0.01
167 123 0.41
168 39 0.13
169 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.19
Consensus pattern (164 bp):
AAAGTCTCTAAGGTCAAAGTCGACAGGCAGACTTGAGGTGAGGACTAAGGTCAAAACTGACAAAC
AGACTTGAAGGTAAAAAAGTCTCTAGGGTCAAAATCGACAGGTAGACTTGAGGTGAGGCAGTCTC
CAAGGTCAAAGCTGATAGGCAGACTAAGGGTAAG
Found at i:3390670 original size:83 final size:84
Alignment explanation
Indices: 3390531--3390687 Score: 199
Period size: 83 Copynumber: 1.9 Consensus size: 84
3390521 AAGTCTACAG
** **
3390531 GGTCAAAGCTGATAGGCACACTAAGTGTAAGAAAATCTCCAAGGCCAAAGTTGACAGACAGACTT
1 GGTCAAAGCTGATAGGCACACTAAAAGTAAGAAAATCTCCAAGGCCAAAGCCGACAGACAGACTT
*
3390596 GAGGTGAGGCACTCTTTGA
66 AAGGTGAGGCACTCTTTGA
* ** ** **
3390615 GGTCAAAGCTGATAGGCAGAC-AAAAGTAAGAAGGTCTCCAAGGTTAAAGCCGACAGGTAGACTT
1 GGTCAAAGCTGATAGGCACACTAAAAGTAAGAAAATCTCCAAGGCCAAAGCCGACAGACAGACTT
3390679 AAGGTGAGG
66 AAGGTGAGG
3390688 TTGTGTCAAA
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
83 41 0.67
84 20 0.33
ACGTcount: A:0.36, C:0.17, G:0.29, T:0.18
Consensus pattern (84 bp):
GGTCAAAGCTGATAGGCACACTAAAAGTAAGAAAATCTCCAAGGCCAAAGCCGACAGACAGACTT
AAGGTGAGGCACTCTTTGA
Found at i:3391923 original size:246 final size:243
Alignment explanation
Indices: 3391596--3392283 Score: 585
Period size: 246 Copynumber: 2.8 Consensus size: 243
3391586 TAAGGGTACG
* ** * * * * *
3391596 AAAGTCTC-AGGGTCAAAGCTGACAAGCAGACTTGAAATGATGCAATCTCTAAGGTTAAAGCTGA
1 AAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCCAGGGTCAAAGC-GA
* * * * *
3391660 CATGCAGACTTAGGGTAAGAAAGCCTCTAAGGTCAAAGTTGATAGGCAGAATTGAGATGAGGCAG
65 CAAGCAGACTGAGGGTAAGAAAGACTCTAAGGTCAAAGCTGATAGGCA-AATTAAGATGAGGCAG
* *
3391725 TCTCAAAGGTCAAAGTCAATAGGCAGACTGAAGGTAAGAAAGTCTCCAAGGTTAAAGCCGACAGG
129 TCTCAAAGGTCAAAGTCAATAGGCAGACTGAAGGTAAGAAAGTCTCCAAGGTCAAAGCCAACAGG
* * * ** *
3391790 CAAACTTGAGGTGAGGCAG-GGTTAAAGCCAACAGGAAAACTTGAAAGTAAA
194 CAAACTTGAGATAAGGCAGAGGTCAAAAACAACAAGAAAAC-TGAAAGT-AA
3391841 AAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCCAGGGTCAAAGTCGA
1 AAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCCAGGGTCAAAG-CGA
* * * * * ** * * *
3391906 TAGGGAGACTGAGGGTAAGAAAGACTCCAAGGTCAATGCCAACAGGCAAACTTAAGGTGAGGTAG
65 CAAGCAGACTGAGGGTAAGAAAGACTCTAAGGTCAAAGCTGATAGGCAAA-TTAAGATGAGGCAG
* * * * * * * * * *
3391971 TCTCTAGGGTTAAAGCCAACAAGCAGACTGAGGGTAAGAAAGTCTTCAGGGTCAAAGCCAACTGG
129 TCTCAAAGGTCAAAGTCAATAGGCAGACTGAAGGTAAGAAAGTCTCCAAGGTCAAAGCCAACAGG
* * * **
3392036 GAGACTTGAGATAAGGCAGTCTCAAGGTCAAAAACAACAAGTAAACTGAGGGTAA
194 CAAACTTGAGATAAGGCAG-----AGGTCAAAAACAACAAGAAAACTGAAAGTAA
*** * * * * **
3392091 AAAGTCT-TAAGGGTCGTGGCCTATAGGCAGACTTGAGGTGAGGCAGCCTTGAGGGTCAAAGCCG
1 AAAGTCTCT-AGGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCCAGGGTCAAAG-CG
* * * * * * *
3392155 ACAAGCAAACTGAGGGTAA-AAA-AATCTTCAGGGTCAAAGCTGATAGGTATACTTAAGATAAGA
64 ACAAGCAGACTGAGGGTAAGAAAGACTC-T-AAGGTCAAAGCTGATAGGCA-AATTAAGATGAGG
* * *** *
3392218 CAGTCTCCAAGGTCAAAGTCAATAGGTAGACTGAAGGTAAGAAAGTCGATAGGGTCAAAGCCAAC
126 CAGTCTCAAAGGTCAAAGTCAATAGGCAGACTGAAGGTAAGAAAGTCTCCAAGGTCAAAGCCAAC
3392283 A
191 A
3392284 TGCAGACTAA
Statistics
Matches: 346, Mismatches: 84, Indels: 21
0.77 0.19 0.05
Matches are distributed among these distances:
245 10 0.03
246 162 0.47
247 1 0.00
248 3 0.01
249 4 0.01
250 144 0.42
251 6 0.02
252 16 0.05
ACGTcount: A:0.37, C:0.17, G:0.28, T:0.18
Consensus pattern (243 bp):
AAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCCAGGGTCAAAGCGAC
AAGCAGACTGAGGGTAAGAAAGACTCTAAGGTCAAAGCTGATAGGCAAATTAAGATGAGGCAGTC
TCAAAGGTCAAAGTCAATAGGCAGACTGAAGGTAAGAAAGTCTCCAAGGTCAAAGCCAACAGGCA
AACTTGAGATAAGGCAGAGGTCAAAAACAACAAGAAAACTGAAAGTAA
Found at i:3393374 original size:42 final size:42
Alignment explanation
Indices: 3391807--3393396 Score: 388
Period size: 42 Copynumber: 37.9 Consensus size: 42
3391797 GAGGTGAGGC
* * * * * *
3391807 AGGGTTAAAGCCAACAGGAAAACTTGAAAGTAAAAAAGTCTCT
1 AGGGTCAAAGCCGACAGGCAGACTT-AAGGTAAGAAAGTCTCT
* * * ** *
3391850 AGGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * * *
3391892 AGGGTCAAAGTCGATAGGGAGACTGAGGGTAAGAAAGACTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * **
3391934 AAGGTCAATGCCAACAGGCAAACTTAAGGTGAGGTAGTCTCT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * *
3391976 AGGGTTAAAGCCAACAAGCAGACTGAGGGTAAGAAAGTCT-T
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * **
3392017 CAGGGTCAAAGCCAACTGGGAGACTTGAGATAAGGCAGTCTC-
1 -AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* ** * * * * * *
3392059 AAGGTCAAAAACAACAAGTAAACTGAGGGTAA-AAAGTCT-T
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
*** * * * * ** *
3392099 AAGGGTCGTGGCCTATAGGCAGACTTGAGGTGAGGCAGCCT-T
1 -AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * *
3392141 GAGGGTCAAAGCCGACAAGCAAACTGAGGGTAAAAAAATCT-T
1 -AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * * *
3392183 CAGGGTCAAAGCTGATAGGTATACTTAAGATAAGACAGTCTCC
1 -AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * * **
3392226 AAGGTCAAAGTCAATAGGTAGACTGAAGGTAAGAAAGTCGAT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * *
3392268 AGGGTCAAAGCCAACATGCAGACTAAAGGTAGGAAAGTTTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * * * * * ** * *
3392310 AAGTTTAAAACCAACAAGCAGACTTGAGATGAGGTAGTCCCC
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * ** * * * **
3392352 AAGGTTAAAGTTGACAAGCAGACTTGAGGTTAGGCTA-TCTAC-
1 AGGGTCAAAGCCGACAGGCAGACTTAAGG-TAAGAAAGTCT-CT
* * * *
3392394 ACGGT-AGAAGCCGACAAGCAGA-TAAAAGGTAAGAAAGTCTGT
1 AGGGTCA-AAGCCGACAGGCAGACT-TAAGGTAAGAAAGTCTCT
* * * * *
3392436 AGGGTCAAAGACGGCAGGCAGACTTGAGGTGAGGTAA-TCTCT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGT-AAGAAAGTCTCT
* * * ** * **
3392478 AGGGTCAAAGCCAAAAGGCAAACTTCTGTTAAGGCAGTCTCT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * *
3392520 AGCGTCAATGTCGATAGGCAGACTGAAGGTAAGAAAATCTCT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * * * ** *
3392562 AGGGTCAAAGTCGATAAGTAGACTTGAGATGAGGTTA-TCTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGT-AAGAAAGTCTCT
* * * * * * *
3392604 ATGGTCAAAGTCAACATGTAGAC-TAAGAGTGAGAAAGTCTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAAG-GTAAGAAAGTCTCT
* * * ** * * * **
3392646 AAGGTCAAAGTCGATAAACAGACTTGAGATGAGGCAGTCT-T
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * *
3392687 CAAGGTCAAAGCTGACAGGCAGACTGAAAGTAAAAAAGTCTCT
1 -AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * *
3392730 AGGGTCAAAGCCGATAGGCAAACTGAAAGTAAAAAAGCCTCT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * ** *
3392772 AGGGTCAAAGCCGATAAGCAAACTTAAGGTGAGGTAGTCTCCA
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCT-CT
* * * * * *
3392815 AGGAT-AAAGCTGACAGGTACAC-TAAGGGTGAGAAAGTCTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAA-GGTAAGAAAGTCTCT
* * * * ** **
3392856 AAGTTCAAAGCCAACAGGCTGACTTAAGGTGTGGTAGTCTCT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * *
3392898 AGAGTCAAAGCCAACACGCA-AATTAAGGGTAAGAAAGTCTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAA-GGTAAGAAAGTCTCT
* * * * ** *
3392940 AGGGTCAAAGTCGACTA-GCAAACTTAAGATGAGGTAG-CTTCC
1 AGGGTCAAAGCCGAC-AGGCAGACTTAAGGTAAGAAAGTC-TCT
** ** * * * *
3392982 AGGGTTGAAGCCGACAAACAGGCTGAGGGTAAGAAAGTCTCA
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * ** *
3393024 AGGGTCAAAGCTGACAAGCAGACTTGAGGTAAGGTAGCCT-T
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * *
3393065 GAAGGTCAAAGTCGACAGGCACACTGAGGGTAAGAAAATCTCT
1 -AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * * * *
3393108 AAGGTCAAAACTGACTAGG-AGACTTGAGATGAGGTAA-TCTCA
1 AGGGTCAAAGCCGAC-AGGCAGACTTAAGGT-AAGAAAGTCTCT
* * * * * * *
3393150 AGGGTCAAAGCCAACAAGCAAACTGAGGGTAAAAAAGGCTC-
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
** * * * * ** *
3393191 AGTGGTCATGGCCGATAGGCAAACTTTAGGTGAGGCAGCCT-T
1 AG-GGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * *
3393233 GAGGGTCAAAGCCGACAAGCAGACTGAGGGTAAGAAA-TCTCC
1 -AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * * * * * * *
3393275 AAGGTCAAAACTGACAAGTATACTTAAGATGAGACAA-TCTCC
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGA-AAGTCTCT
* * * * *
3393317 AAGGTTAAAGTCGATAGGTAGACTTAAGGTAAGAAAGTCTCT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
* * * *
3393359 AGGGTCAAAGCCGATAGGCAAACTGAAGGTAGGAAAGT
1 AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGT
3393397 TTACAAGGTA
Statistics
Matches: 1085, Mismatches: 418, Indels: 89
0.68 0.26 0.06
Matches are distributed among these distances:
40 5 0.00
41 103 0.09
42 914 0.84
43 63 0.06
ACGTcount: A:0.37, C:0.17, G:0.27, T:0.19
Consensus pattern (42 bp):
AGGGTCAAAGCCGACAGGCAGACTTAAGGTAAGAAAGTCTCT
Found at i:3393374 original size:167 final size:167
Alignment explanation
Indices: 3393004--3393382 Score: 420
Period size: 167 Copynumber: 2.3 Consensus size: 167
3392994 GACAAACAGG
* * * * * *
3393004 CTGAGGGTAAGAAAGTCTCAAGGGTCAAAGCTGACAAGCAGACTTGAGGTAAGGTAGCCTTGAAG
1 CTGAAGGTAAGAAAGTCTC-AGGGTCAAAGCCGATAGGCAAACTTGAGGTAAGGCAGCCTTGAAG
* * * * *
3393069 GTCAAAGTCGACAGGCACACTGAGGGTAAGAAAATCTCTAAGGTCAAAACTGACTAGGAGACTTG
65 GTCAAAGCCGACAAGCACACTGAGGGTAAGAAAATCTCCAAGGTCAAAACTGACAAGGAGACTTA
**
3393134 AGATGAGGTAATCTCAAGGGTCAAAGCCAACAAGCAAA
130 AGATGAGACAATCTCAAGGGTCAAAGCCAACAAGCAAA
* * * ** * * *
3393172 CTGAGGGTAAAAAAGGCTCAGTGGTCATGGCCGATAGGCAAACTTTAGGTGAGGCAGCCTTGAGG
1 CTGAAGGTAAGAAAGTCTCAG-GGTCAAAGCCGATAGGCAAACTTGAGGTAAGGCAGCCTTGAAG
* * *
3393237 GTCAAAGCCGACAAGCAGACTGAGGGTAAG-AAATCTCCAAGGTCAAAACTGACAAGTATACTTA
65 GTCAAAGCCGACAAGCACACTGAGGGTAAGAAAATCTCCAAGGTCAAAACTGACAAGGAGACTTA
* * * * * * *
3393301 AGATGAGACAATCTCCAA-GGTTAAAGTCGATAGGTAGA
130 AGATGAGACAATCT-CAAGGGTCAAAGCCAACAAGCAAA
*
3393339 CTTAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGATAGGCAAACT
1 CTGAAGGTAAGAAAGTCTC-AGGGTCAAAGCCGATAGGCAAACT
3393383 GAAGGTAGGA
Statistics
Matches: 173, Mismatches: 35, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
167 91 0.53
168 82 0.47
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.18
Consensus pattern (167 bp):
CTGAAGGTAAGAAAGTCTCAGGGTCAAAGCCGATAGGCAAACTTGAGGTAAGGCAGCCTTGAAGG
TCAAAGCCGACAAGCACACTGAGGGTAAGAAAATCTCCAAGGTCAAAACTGACAAGGAGACTTAA
GATGAGACAATCTCAAGGGTCAAAGCCAACAAGCAAA
Found at i:3393660 original size:42 final size:41
Alignment explanation
Indices: 3393614--3393863 Score: 114
Period size: 42 Copynumber: 6.0 Consensus size: 41
3393604 TGTCAACAAG
3393614 CAGACTGAAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGA
1 CAGACTG-AGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGA
* * **** * *
3393656 CAGACTTGAGATGAGGCTGTCT-TCATGGTCAAAGTCGACATG-
1 CAGAC-TGAGGTAAGAAAATCTCT-AGGGTCAAAGCCGACA-GA
* * * * * * *
3393698 TAGACTGAGAGTAGGAAAGTCTCCAAGGTCAAAGTCGATAGA
1 CAGACTGAG-GTAAGAAAATCTCTAGGGTCAAAGCCGACAGA
* ** * * * *
3393740 CAGACTTGAGATAAGGTAGTCT-TAAGGTCAAAGTCGACAGG
1 CAGAC-TGAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGA
* * *
3393781 CAGACTGAAAGTAA-AAAAGTCTCTAGGGTAAAAGCCGACAGG
1 CAGACTG-AGGTAAGAAAA-TCTCTAGGGTCAAAGCCGACAGA
* * * *
3393823 CAAACTGAAAGTAA-AAAAGTCTCTCGGGTCAAAACCGACAG
1 CAGACTG-AGGTAAGAAAA-TCTCTAGGGTCAAAGCCGACAG
3393864 GCAAACTTGA
Statistics
Matches: 160, Mismatches: 38, Indels: 20
0.73 0.17 0.09
Matches are distributed among these distances:
40 3 0.02
41 34 0.21
42 116 0.73
43 7 0.04
ACGTcount: A:0.38, C:0.18, G:0.26, T:0.18
Consensus pattern (41 bp):
CAGACTGAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGA
Found at i:3393671 original size:84 final size:83
Alignment explanation
Indices: 3393518--3393821 Score: 254
Period size: 84 Copynumber: 3.6 Consensus size: 83
3393508 TAAAGGTAAG
* * ** ** * ** ** *
3393518 AAAGTCTACAGGCAGACTTGAGGTAAGGTAATCTCTAGGGTCAAAGCTAAAAGGTAGACTTCTGT
1 AAAGTCGACAAGCAGAC-TGAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGACAGACTTGAGA
*
3393583 TGAGGCAGTTTCTAGGGTC
65 TGAGGCAGTTTCTAAGGTC
* *
3393602 AATGTCAACAAGCAGACTGAAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGACAGACTTGAGA
1 AAAGTCGACAAGCAGACTG-AGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGACAGACTTGAGA
* *
3393667 TGAGGCTGTCTTC-ATGGTC
65 TGAGGCAGT-TTCTAAGGTC
* * * * * * * *
3393686 AAAGTCGACATGTAGACTGAGAGTAGGAAAGTCTCCAAGGTCAAAGTCGATAGACAGACTTGAGA
1 AAAGTCGACAAGCAGACTGAG-GTAAGAAAATCTCTAGGGTCAAAGCCGACAGACAGACTTGAGA
* * *
3393751 TAAGGTAGTCT-TAAGGTC
65 TGAGGCAGTTTCTAAGGTC
* * *
3393769 AAAGTCGACAGGCAGACTGAAAGTAA-AAAAGTCTCTAGGGTAAAAGCCGACAG
1 AAAGTCGACAAGCAGACTG-AGGTAAGAAAA-TCTCTAGGGTCAAAGCCGACAG
3393822 GCAAACTGAA
Statistics
Matches: 174, Mismatches: 40, Indels: 13
0.77 0.18 0.06
Matches are distributed among these distances:
82 3 0.02
83 47 0.27
84 121 0.70
85 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.21
Consensus pattern (83 bp):
AAAGTCGACAAGCAGACTGAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAGACAGACTTGAGAT
GAGGCAGTTTCTAAGGTC
Found at i:3393785 original size:41 final size:41
Alignment explanation
Indices: 3393640--3393786 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 41
3393630 AAATCTCTAG
* * *
3393640 GGTCAAAGCCGACAGACAGACTTGAGATGAGGCT-GTCTTCAT
1 GGTCAAAGTCGACAGACAGACTTGAGAT-AGGATAGTCTT-AA
* * *
3393682 GGTCAAAGTCGACATG-TAGAC-TGAGAGTAGGAAAGTCTCCAA
1 GGTCAAAGTCGACA-GACAGACTTGAGA-TAGGATAGTCT-TAA
*
3393724 GGTCAAAGTCGATAGACAGACTTGAGATAAGG-TAGTCTTAA
1 GGTCAAAGTCGACAGACAGACTTGAGAT-AGGATAGTCTTAA
*
3393765 GGTCAAAGTCGACAGGCAGACT
1 GGTCAAAGTCGACAGACAGACT
3393787 GAAAGTAAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
41 31 0.36
42 46 0.53
43 9 0.10
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.20
Consensus pattern (41 bp):
GGTCAAAGTCGACAGACAGACTTGAGATAGGATAGTCTTAA
Found at i:3393802 original size:41 final size:42
Alignment explanation
Indices: 3393682--3393866 Score: 167
Period size: 42 Copynumber: 4.4 Consensus size: 42
3393672 CTGTCTTCAT
* * * ** *
3393682 GGTCAAAGTCGACATGTAGACTGAGAGTAGGAAAGTCTCCAA
1 GGTCAAAGTCGACAGGCAGACTGAAAGTAAAAAAGTCTCTAA
* * * ***
3393724 GGTCAAAGTCGATAGACAGACTTGAGA-TAAGGTAGTCT-TAA
1 GGTCAAAGTCGACAGGCAGAC-TGAAAGTAAAAAAGTCTCTAA
*
3393765 GGTCAAAGTCGACAGGCAGACTGAAAGTAAAAAAGTCTCTAG
1 GGTCAAAGTCGACAGGCAGACTGAAAGTAAAAAAGTCTCTAA
* * * **
3393807 GGTAAAAGCCGACAGGCAAACTGAAAGTAAAAAAGTCTCTCG
1 GGTCAAAGTCGACAGGCAGACTGAAAGTAAAAAAGTCTCTAA
**
3393849 GGTCAAAACCGACAGGCA
1 GGTCAAAGTCGACAGGCA
3393867 AACTTGAGGT
Statistics
Matches: 119, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
40 4 0.03
41 29 0.24
42 81 0.68
43 5 0.04
ACGTcount: A:0.39, C:0.17, G:0.26, T:0.17
Consensus pattern (42 bp):
GGTCAAAGTCGACAGGCAGACTGAAAGTAAAAAAGTCTCTAA
Found at i:3397176 original size:20 final size:20
Alignment explanation
Indices: 3397129--3397203 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
3397119 AAAAAGACAT
*
3397129 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
3397148 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
3397169 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
3397189 AATGTATCGATACAT
1 AATGTATCGATACAT
3397204 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:3397197 original size:40 final size:39
Alignment explanation
Indices: 3397126--3397203 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
3397116 GGTAAAAAGA
* *
3397126 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
3397165 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
3397204 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:3397806 original size:32 final size:32
Alignment explanation
Indices: 3397763--3398889 Score: 941
Period size: 29 Copynumber: 38.1 Consensus size: 32
3397753 TTTTTAAAAA
** * *
3397763 AAAAGGG-TGCCACTAACTTATGTGGGCCTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
** * *
3397794 AAAAGAATTGCCACTGACTCGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3397826 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3397858 AAAAGGGTTGCCACCGACTTGTGTGGGTTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3397890 AAAATGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3397922 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* * * *
3397954 GAATGGGTTGCCACTGACTTGTGTGGGCTTTA
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
3397986 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398018 AAAATGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398050 AAATGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
3398082 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398114 AAAATGGTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
** ** *
3398146 -AAA-GAATGCCACTAAC-T-TGTGGGCTCTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
**
3398174 -AAAGGG-TGCCACTAAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398202 -AAAGGG-GGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* * * *
3398230 AAAAGAG-CGCCACTGA-TT-TATGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398259 AAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398288 -AAAGGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGG-GTTGCCACCGACTTGTGTGGGCTTTG
**
3398317 -AAAGGG-TGCCACTAAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398345 -AAAGGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGG-GTTGCCACCGACTTGTGTGGGCTTTG
*
3398374 -AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* **
3398402 AAAAGAG-TGCCATTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398431 -AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
**
3398459 -AAAGGG-TGCCACTAAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398487 AAAAGAG-TGCCACTGA-TT-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398516 AAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398545 -AAAGGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGG-GTTGCCACCGACTTGTGTGGGCTTTG
* *
3398574 -AAAGGG-TGCCACTGA-GT-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398602 -AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398630 AAAAGAG-TGCCACTGA-TT-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398659 AAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
**
3398688 -AAAGGG-TGCCATTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398716 -AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398744 AAAAGAG-TGCCACTGA-TT-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398773 AAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398802 -AAAGGG-TGCCACTGA-GT-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
*
3398830 -AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
* *
3398858 AAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG
1 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
3398887 AAA
1 AAA
3398890 GGGATGAACA
Statistics
Matches: 1012, Mismatches: 61, Indels: 48
0.90 0.05 0.04
Matches are distributed among these distances:
28 326 0.32
29 352 0.35
30 9 0.01
31 8 0.01
32 317 0.31
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (32 bp):
AAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
Found at i:3398278 original size:114 final size:114
Alignment explanation
Indices: 3397764--3398892 Score: 1361
Period size: 114 Copynumber: 9.6 Consensus size: 114
3397754 TTTTAAAAAA
* * *
3397764 AAAGGGTGCCACTAACTTATGTGGGCCTTGAAAAGAATTGCCACTGACTCGTGTGGGCTTTGAAA
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTTGAAAAG-AGTGCCACTGACT--TGTGGGCTTTGAAA
* * *
3397829 TGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGTTTTG
61 -GGG-TGCCACTGAC-T-TGTGGGCTTTGAAAAGGG-TGCCACTGA-TT-TGTGGGCTTTG
* * * * *
3397890 AAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGG
1 -AAA-GGGTGCCACTGAC-T-TGTGGGCTTTGAAAAGAG-TGCCACTGAC-T-TGTGGGCTTT-G
* * *
3397955 AATGGGTTGCCACTGACTTGTGTGGGCTTTAAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG
58 AAAGGG-TGCCACTGAC-T-TGTGGGCTTTGAAAAGGG-TGCCACTGA-TT-TGTGGGCTTTG
* * * * *
3398018 AAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGA
1 -AAA-GGGTGCCACTGAC-T-TGTGGGCTTTGAAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG-
* * *
3398083 AAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAATGGTTGCCACCGACTTGTGTGGGCTTTG
58 AAAGGG-TGCCACTGAC-T-TGTGGGCTTTGAAAA-GGGTGCCACTGA-TT-TGTGGGCTTTG
** * * * * *
3398146 AAAGAATGCCACTAACTTGTGGGCTCTG-AAAGGGTGCCACTAACTTGTGGGCTTTGAAAGGGGG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3398210 CCACTGACTTGTGGGCTTTGAAAAGAGCGCCACTGATTTATGGGCTTTG
66 CCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGATTTGTGGGCTTTG
* *
3398259 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
1 -AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
* *
3398324 GCCACTAACTTGTGGGCTTTG-AAAGGAGTGCCACTGACTTGTGGGCTTTG
65 GCCACTGACTTGTGGGCTTTGAAAAGG-GTGCCACTGATTTGTGGGCTTTG
*
3398374 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAGGGTG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3398439 CCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTAACTTGTGGGCTTTG
66 CCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGATTTGTGGGCTTTG
* *
3398487 AAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAG
1 -AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG-G
*
3398552 TGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGAGTTGTGGGCTTTG
64 TGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGATTTGTGGGCTTTG
* *
3398602 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGT
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGT
* *
3398667 GCCACTGACTTGTGGGCTTTG-AAAGGGTGCCATTGACTTGTGGGCTTTG
65 GCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGATTTGTGGGCTTTG
* *
3398716 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGT
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGT
*
3398781 GCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGAGTTGTGGGCTTTG
65 GCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGATTTGTGGGCTTTG
3398830 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGG
3398893 ATGAACATTC
Statistics
Matches: 926, Mismatches: 64, Indels: 38
0.90 0.06 0.04
Matches are distributed among these distances:
113 37 0.04
114 447 0.48
115 132 0.14
116 15 0.02
117 1 0.00
118 8 0.01
119 6 0.01
120 11 0.01
121 1 0.00
122 8 0.01
123 5 0.01
124 10 0.01
125 1 0.00
126 9 0.01
127 7 0.01
128 222 0.24
129 6 0.01
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (114 bp):
AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTG
CCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGATTTGTGGGCTTTG
Found at i:3398324 original size:143 final size:143
Alignment explanation
Indices: 3397763--3398892 Score: 1365
Period size: 143 Copynumber: 7.6 Consensus size: 143
3397753 TTTTTAAAAA
* * *
3397763 AAAAGGGTGCCACTAACTTATGTGGGCCTTGAAAAGAATTGCCACTGACTCGTGTGGGCTTTGAA
1 AAAAGGGTGCCACTGAC-T-TGTGGGCTTTGAAAAG-AGTGCCACTGACT--TGTGGGCTTTGAA
* * *
3397828 ATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGTTTTGAAA
61 A-GGG-TGCCACTGAC-T-TGTGGGCTTTG-AAAGGG-TGCCACTGAC-T-TGTGGGCTTTGAAA
* *
3397893 ATGGTTGCCACCGACTTGTGTGGGCTTTG
118 A-GGGTGCCACTGAC-T-TGTGGGCTTTG
* * * * * *
3397922 AAATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATGGGTTGCCACTGACTTGTGTGGGCTTTAA
1 AAAAGGG-TGCCACTGAC-T-TGTGGGCTTTGAAAAGAG-TGCCACTGAC-T-TGTGGGCTTT-G
* * *
3397987 AAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAATGGTTGCCACCGACTTGTGTGGGCTTTGAA
59 AAAGGG-TGCCACTGAC-T-TGTGGGCTTTG-AAA-GGGTGCCACTGAC-T-TGTGGGCTTTGAA
* *
3398052 ATGGGTTGCCACCGACTTGTGTGGGCTTTG
117 AAGGG-TGCCACTGAC-T-TGTGGGCTTTG
* *
3398082 AAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAATG-GTTGCCACCGACTTGTGTGGGCTTTG
1 AAAAGGG-TGCCACTGAC-T-TGTGGGCTTTGAAAA-GAG-TGCCACTGAC-T-TGTGGGCTTTG
** * * * *
3398146 AAAGAATGCCACTAACTTGTGGGCTCTGAAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGGGGG
59 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTG
3398210 CCACTGACTTGTGGGCTTTG
124 CCACTGACTTGTGGGCTTTG
* * * *
3398230 AAAAGAGCGCCACTGATTTATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG-G
*
3398295 TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGGAGTGCCACT
65 TGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGG-GTGCCACT
3398359 GACTTGTGGGCTTTG
129 GACTTGTGGGCTTTG
*
3398374 -AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAGGGT
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
* *
3398438 GCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGA
66 GCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGA
*
3398503 TTTGTGGGCTTTG
131 CTTGTGGGCTTTG
* *
3398516 AAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
* *
3398581 GCCACTGAGTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGA
66 GCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGA
*
3398646 TTTGTGGGCTTTG
131 CTTGTGGGCTTTG
* * *
3398659 AAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGGTGCCATTGACTTGTGGGCTTTGAAAGGGT
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
* * *
3398723 GCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGTGGGCTTTGAAAAGAGTGCCACTG
66 GCCACTGACTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTG
3398788 ACTTGTGGGCTTTG
130 ACTTGTGGGCTTTG
* * *
3398802 -AAAGGGTGCCACTGAGTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAG
1 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG-AAAGGG
3398865 TGCCACTGACTTGTGGGCTTTGAAAGGG
65 TGCCACTGACTTGTGGGCTTTGAAAGGG
3398893 ATGAACATTC
Statistics
Matches: 892, Mismatches: 65, Indels: 45
0.89 0.06 0.04
Matches are distributed among these distances:
142 198 0.22
143 362 0.41
144 32 0.04
145 15 0.02
146 1 0.00
147 7 0.01
148 17 0.02
149 1 0.00
150 8 0.01
151 5 0.01
152 11 0.01
153 1 0.00
154 10 0.01
155 3 0.00
156 10 0.01
157 1 0.00
158 8 0.01
159 12 0.01
160 183 0.21
161 7 0.01
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (143 bp):
AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGT
GCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGA
CTTGTGGGCTTTG
Found at i:3398642 original size:257 final size:260
Alignment explanation
Indices: 3397764--3398889 Score: 1507
Period size: 257 Copynumber: 4.2 Consensus size: 260
3397754 TTTTAAAAAA
* * **
3397764 AAAGGGTGCCACTAACTTATGTGGGCCTTGAAAAGAATTGCCACTGACTCGTGTGGGCTTTGAAA
1 AAAGGGTGCCACTGAC-T-TGTGGGCTTTGAAAAG-GGTGCCACTGACT--TGTGGGCTTTGAAA
* * * *
3397829 TGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGTTTTGAAAA
61 AGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG-AAA
* * * * *
3397894 TGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGGAATG
122 -GGGTGCCACTGAC-T-TGTGGGCTTTGAAA-GGG-TGCCACTGAC-T-TGTGGGCTTTGAAAAG
* * * *
3397959 GGTTGCCACTGACTTGTGTGGGCTTTAAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAATG
180 AG-TGCCACTGA-TT-TGTGGGCTTTGAAAAGAG-TGCCACTGAC-T-TGTGGGCTTTG-AAA-G
* *
3398024 GTTGCCACCGACTTGTGTGGGCTTTG
237 GGTGCCACTGAC-T-TGTGGGCTTTG
* *
3398050 AAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGA
1 AAA-GGG-TGCCACTGAC-T-TGTGGGCTTTGAAAAGGG-TGCCACTGAC-T-TGTGGGCTTTGA
* * * *
3398115 AAATGGTTGCCACCGACTTGTGTGGGCTTTG-AAAGAATGCCACTAACTTGTGGGCTCTGAAAGG
59 AAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG
* * *
3398179 GTGCCACTAACTTGTGGGCTTTGAAAGGGGGCCACTGACTTGTGGGCTTTGAAAAGAGCGCCACT
124 GTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACT
*
3398244 GATTTATGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGT
189 GATTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGT
3398309 GGGCTTTG
253 GGGCTTTG
*
3398317 AAAGGGTGCCACTAACTTGTGGGCTTTG-AAAGGAGTGCCACTGACTTGTGGGCTTTG-AAAGGG
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGG-GTGCCACTGACTTGTGGGCTTTGAAAAGGG
* *
3398380 -TGCCACTGAC-T-TGTGGGCTTTGAAAAGAGTGCCATTGACTTGTGGGCTTTGAAAGGGTGCCA
65 TTGCCACCGACTTGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCA
*
3398442 CTGACTTGTGGGCTTTGAAAGGGTGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTG
130 CTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTG
3398507 TGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGAGTGCCACTGACTTGTGGGCTT
195 TGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGG-GTGCCACTGACTTGTGGGCTT
3398572 TG
259 TG
* *
3398574 AAAGGGTGCCACTGAGTTGTGGGCTTTG-AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAG-
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGT
* *
3398637 TGCCACTGA-TT-TGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCAT
66 TGCCACCGACTTGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCAC
3398700 TGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGT
131 TGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGT
*
3398765 GGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGAGTTGTGGGCTTTG
196 GGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG
*
3398830 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAA
1 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAA
3398890 GGGATGAACA
Statistics
Matches: 777, Mismatches: 53, Indels: 49
0.88 0.06 0.06
Matches are distributed among these distances:
256 83 0.11
257 395 0.51
258 9 0.01
259 5 0.01
260 11 0.01
261 1 0.00
262 14 0.02
263 12 0.02
264 1 0.00
265 8 0.01
266 3 0.00
267 14 0.02
268 3 0.00
269 12 0.02
270 11 0.01
271 1 0.00
272 9 0.01
273 15 0.02
274 2 0.00
275 8 0.01
276 15 0.02
277 1 0.00
278 8 0.01
279 3 0.00
280 14 0.02
281 1 0.00
282 10 0.01
283 3 0.00
284 9 0.01
285 1 0.00
286 11 0.01
287 7 0.01
288 76 0.10
289 1 0.00
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (260 bp):
AAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGGGT
TGCCACCGACTTGTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCAC
TGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGATTTGT
GGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTG
Found at i:3400126 original size:1 final size:1
Alignment explanation
Indices: 3400122--3400179 Score: 53
Period size: 1 Copynumber: 58.0 Consensus size: 1
3400112 TTTTTTGCTA
* * * * * * *
3400122 TTTTTTCTTTTTTTGTTTTTTGTTTTGTTTTTTTTTGTGTTTTTTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
3400180 GGGTGTAAAG
Statistics
Matches: 43, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.00, C:0.02, G:0.10, T:0.88
Consensus pattern (1 bp):
T
Found at i:3400135 original size:22 final size:19
Alignment explanation
Indices: 3400110--3400180 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 19
3400100 GACCCTTCTA
3400110 TTTTTTTTGCTATTTTTTCTTT
1 TTTTTTTTG-T-TTTTTT-TTT
*
3400132 TTTTGTTTT-TTGTTTTGTTT
1 TTTT-TTTTGTT-TTTTTTTT
*
3400152 TTTTTTGTGTTTTTTTTTT
1 TTTTTTTTGTTTTTTTTTT
3400171 GTTTTTTTTG
1 -TTTTTTTTG
3400181 GGTGTAAAGG
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 10 0.24
20 18 0.44
21 5 0.12
22 4 0.10
23 4 0.10
ACGTcount: A:0.01, C:0.03, G:0.11, T:0.85
Consensus pattern (19 bp):
TTTTTTTTGTTTTTTTTTT
Found at i:3400149 original size:12 final size:11
Alignment explanation
Indices: 3400129--3400179 Score: 84
Period size: 12 Copynumber: 4.5 Consensus size: 11
3400119 CTATTTTTTC
3400129 TTTTTTTGTTT
1 TTTTTTTGTTT
3400140 TTTGTTTTGTTT
1 TTT-TTTTGTTT
3400152 TTTTTTGTGTTT
1 TTTTTT-TGTTT
3400164 TTTTTTTGTTT
1 TTTTTTTGTTT
3400175 TTTTT
1 TTTTT
3400180 GGGTGTAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
11 16 0.42
12 22 0.58
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:3400155 original size:23 final size:24
Alignment explanation
Indices: 3400112--3400179 Score: 88
Period size: 23 Copynumber: 2.8 Consensus size: 24
3400102 CCCTTCTATT
3400112 TTTTTTGCTATTT-TTTCTTTTTT-TG
1 TTTTTTG-T-TTTGTTT-TTTTTTGTG
3400137 TTTTTTGTTTTGTTTTTTTTTGTG
1 TTTTTTGTTTTGTTTTTTTTTGTG
3400161 TTTTTT-TTTTGTTTTTTTT
1 TTTTTTGTTTTGTTTTTTTT
3400180 GGGTGTAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
23 22 0.54
24 12 0.29
25 7 0.17
ACGTcount: A:0.01, C:0.03, G:0.10, T:0.85
Consensus pattern (24 bp):
TTTTTTGTTTTGTTTTTTTTTGTG
Found at i:3414233 original size:20 final size:20
Alignment explanation
Indices: 3414186--3414260 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
3414176 AAAAAGACAT
*
3414186 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
3414205 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
3414226 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
3414246 AATGTATCGATACAT
1 AATGTATCGATACAT
3414261 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:3414254 original size:40 final size:39
Alignment explanation
Indices: 3414183--3414260 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
3414173 GGTAAAAAGA
* *
3414183 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
3414222 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
3414261 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:3414609 original size:42 final size:42
Alignment explanation
Indices: 3414542--3414695 Score: 132
Period size: 42 Copynumber: 3.7 Consensus size: 42
3414532 GTAGGAAAGC
* ** * *
3414542 CTCCAAGGTCAAAGTTGACAAGCAGACTTGAGATGAGGCAGT
1 CTCCAAGGTCAATGCCGACAGGCAGACTTGAGGTGAGGCAGT
* ** *
3414584 CTCCAAGGTCAATGCC-AGCAGGCAGAC-TGAGGGTAAGAAAGC
1 CTCCAAGGTCAATGCCGA-CAGGCAGACTTGA-GGTGAGGCAGT
** * *
3414626 CTCTGAGGTCAATGTCGATAGGCAGACTTGAGGTGAGGCAGT
1 CTCCAAGGTCAATGCCGACAGGCAGACTTGAGGTGAGGCAGT
* * *
3414668 CTCCAAGGTTAAAGCCGATAGGCAGACT
1 CTCCAAGGTCAATGCCGACAGGCAGACT
3414696 AAAGGTAAGA
Statistics
Matches: 86, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
41 4 0.05
42 78 0.91
43 4 0.05
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.18
Consensus pattern (42 bp):
CTCCAAGGTCAATGCCGACAGGCAGACTTGAGGTGAGGCAGT
Found at i:3414691 original size:84 final size:83
Alignment explanation
Indices: 3414483--3414747 Score: 255
Period size: 84 Copynumber: 3.1 Consensus size: 83
3414473 CAACATGCAT
* * * * * * * * *
3414483 ACTTTAGATGAGGCAGTCTCTAATGTCAAAGTC-GACAGGTAGTCTAGGGGTAGGAAAGCCTCCA
1 ACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCAG-CAGGCAGACTAAGGGTAAGAAAGCCT-CT
* * *
3414547 AGGTCAAAGTTGACAAGCAG
64 AGGTCAAAGTCGATAGGCAG
* *
3414567 ACTTGAGATGAGGCAGTCTCCAAGGTCAATGCCAGCAGGCAGACTGAGGGTAAGAAAGCCTCTGA
1 ACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCAGCAGGCAGACTAAGGGTAAGAAAGCCTCT-A
*
3414632 GGTCAATGTCGATAGGCAG
65 GGTCAAAGTCGATAGGCAG
* * * * *
3414651 ACTTGAGGTGAGGCAGTCTCCAAGGTTAAAGCC-GATAGGCAGACTAAAGGTAAGAAAAAGTCTC
1 ACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCAG-CAGGCAGACTAAGGGTAAG--AAAGCCTC
* *
3414715 TAGGGTCAAAGCCGATAGGTAG
63 TA-GGTCAAAGTCGATAGGCAG
3414737 ACTTGAGATGA
1 ACTTGAGATGA
3414748 AGTTGTTACC
Statistics
Matches: 149, Mismatches: 26, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
83 2 0.01
84 111 0.74
85 2 0.01
86 34 0.23
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (83 bp):
ACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCAGCAGGCAGACTAAGGGTAAGAAAGCCTCTAG
GTCAAAGTCGATAGGCAG
Found at i:3418269 original size:21 final size:21
Alignment explanation
Indices: 3418245--3418300 Score: 112
Period size: 21 Copynumber: 2.7 Consensus size: 21
3418235 AGCGATACAC
3418245 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
3418266 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
3418287 TGTATCGATACATT
1 TGTATCGATACATT
3418301 TACTGTTTGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:3418795 original size:42 final size:42
Alignment explanation
Indices: 3418749--3420804 Score: 284
Period size: 42 Copynumber: 49.6 Consensus size: 42
3418739 CTGAGTCTAT
*
3418749 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAAGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * *
3418791 GAAAGTC-CCTAGGGCCAAAGCCGACAGGTAGACTTG-AGGT--
1 GAAAGTCTCC-AAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
* ** * *
3418831 G--AGGCT---AGGTCAAAGCCAACAGGCATACTTGAGACG--A
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGA-AGGTAA
** * * *
3418868 GGCAGTCTCCAGGGTCAAAG-TCGATA-GCTAGACT-AAGGGTAG
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGC-AGACTGAA-GGTAA
* * *
3418910 GAAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTG-AGATGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
* * * * * *
3418952 GATAGTCTCTAAGGTCAAAG-TCAACAGGTAGACTTAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAA
* * **
3418994 GAAAG-CATCCAAGGTCAAAG-TCGATAGGCAGAATTG-AGGCGA
1 GAAAGTC-TCCAAGGTCAAAGCT-GACAGGCAG-ACTGAAGGTAA
** * * * *
3419036 GGCAGTCTCAAAGGTTAAAG-TCGATAGGCAGATTGAAGGTAA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAA
* * *
3419078 GAAAGTCTCTAAGGTTAAAGCCGACAGGCAGACTTG-AGGT--
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
* * * *
3419118 G--AG-GT--AGGGTCAAAGCCGATAGGCAGACTTGAAGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
* * * ** * *
3419156 GAATGTCTCCAGGGTCAAAACCAACAAGCAGACTTG-AGGTGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
** * * ** * * * *
3419198 GGTAGTCTCTAGGGTCAAAGCCCATAGGAAGACAGAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * ** * * *
3419240 GAAAGACTCCAAGGTCAATGCCAATAGGCAGACTTAAGGTGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * * ** *
3419282 GATAGTCTCTAGGGTTAAAGCCAACAGGCAGACTGAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * * * * *
3419324 GAAAGTCTCCAGGGTTAAAGCCGACTGGGAGACTTG-GGGTGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
** * ** * * *
3419366 GGCAGTCT-CATGGGTCAAAGCCAACAAGCAAACTGAGGGTAA
1 GAAAGTCTCCA-AGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * ** * * *
3419408 AAAAGTCT-TAAGGGTCATGGCCGATAGGCAGACTTG-AGGTGA
1 GAAAGTCTCCAA-GGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
** * ** * * * ** *
3419450 GGTAGCCTTGAGGGTCAAAGCCGATAGGCAGTTTGAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * * * * *
3419492 GAAAATCTTCAGGGTTAAAGCTGACAGGTATG-CTTAA-G-AT
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCA-GACTGAAGGTAA
* * * *
3419532 GAAACCGTCTCCAAGGTCAAA-ATCGATAGGTAGACCGCAA-GTAA
1 GAAA--GTCTCCAAGGTCAAAGCT-GACAGGCAGACTG-AAGGTAA
* * * * *
3419576 GAAAGTCTCTAAGGTCAAAACCGACAGGCAGACTGATGGTAG
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* **** * ** * * *
3419618 GAAAGTTTTTGGGGTCAAAACCAACAAGG-AAACTTG-AGATGA
1 GAAAGTCTCCAAGGTCAAAGCTGAC-AGGCAGAC-TGAAGGTAA
** * * * * * * * *
3419660 GGCACTC-CCAGGGTTAAAGTTGATAGGTAGACTTAAGGTTA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
*** * * * *
3419701 GGTTGTCTACATGGTCGAAA-CTTACAGGCAGACTAAAGGTAA
1 GAAAGTCTCCAAGGTC-AAAGCTGACAGGCAGACTGAAGGTAA
** * * * * *
3419743 GAAAGTCTATAGGGTCAAAGTTGAAAGGCAGACTTG-AGGCGAG
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGG-TAA
* * * * ** * * *** * *
3419786 GTAA-TTTCTAGGGTCAAAGCCAAAAGGTAGACTTTTGTTGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
** * * *
3419827 GGCAGTCTCTAGGGTCAATG-TCGACAGGCAGACTGAAGGTAA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAA
* * * ** * *
3419869 GAAAATCTCTAGGGTCAAAGCCT-TTAGGCAGACTTG-AGATGA
1 GAAAGTCTCCAAGGTCAAAG-CTGACAGGCAGAC-TGAAGGTAA
*** * * *
3419911 GGTTGTCTCCATGGTCAAAG-TCGACATGTAGACTG-AGAGT-A
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAAG-GTAA
* * ** *
3419952 GAAAAGTCTCCAGGGTCAAAG-TCGATAGATAAACTTGACA--TAA
1 G-AAAGTCTCCAAGGTCAAAGCT-GACAGGCAGAC-TGA-AGGTAA
* * * * *
3419995 GACAGTCTCCAAGGTCAAAG-TCGATAGGCAAACTAAAAGTAA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAA
* * * * *
3420037 AAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAAAGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * *
3420079 AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGGT--
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * ** * * * *
3420119 G--AG---GCAGGGTCAAAGCCAACAAGCATACTTG-AGATGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
** * * * *
3420156 GGCAGTCT-CTAGTGTCAAAG-TCGATAGGCAGTCTGAAGGTAG
1 GAAAGTCTCCAAG-GTCAAAGCT-GACAGGCAGACTGAAGGTAA
* * * * * *
3420198 GAAAGTCTCTAAGGTCAAAGTTGACAAGTAGACTTG-AGATGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
** * *
3420240 GGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * * *
3420282 GAAAGCCTCCAAGGTCAATG-TCGATAGGGAGACTTG-AGGTGA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGAC-TGAAGGTAA
** * * * * * *
3420324 GGCAGTGTCTAAGGTTAAAGCCGATAGGTAGACTGAAGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * * *
3420366 GAAATTCTCTAGGGTTAAAGCCGACAGGCAGACTTG-AGGT--
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
* * ** *
3420406 G--AG---GCATGGTCAAAGCCAATAGGCAGACTTGAAGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
* * * *
3420444 GAAAGTCTCTAGGGTCAAAGCTGACTA-GCAAACTTG-AGGTGA
1 GAAAGTCTCCAAGGTCAAAGCTGAC-AGGCAGAC-TGAAGGTAA
** * * *
3420486 GGCAGTCTCCAAGGACAAAG-TCGACAGGTAGACT-AAGGGTGA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAA-GGTAA
* * ** ** * *
3420528 GGAAGTCTCCAAGTTCAAAGCCAACAGGTTGACTTAAGGTGA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * * * * *
3420570 GATAGTCTCTAGGGTCAAAGCCGATAGGCAGATTGAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * * * * *
3420612 GAAAATCTCTATGGTCAAAG-TCGACTGGCATACTTAAGATAA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAAGGTAA
** * * ** * *
3420654 GGTAGTTTCCAAGGTCAAAGCCGACAAACAGACAGAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
* * * *
3420696 GAAAGTGT-CAATGGTCAAAGCTGACAAGCAAACTTG-AGGTGA
1 GAAAGTCTCCAA-GGTCAAAGCTGACAGGCAGAC-TGAAGGTAA
** * ** *
3420738 GGTAGCCTTAAAGGTCAAAG-TCGACAGGTAGACT-AAGGGTAA
1 GAAAGTCTCCAAGGTCAAAGCT-GACAGGCAGACTGAA-GGTAA
* *
3420780 GAAAATCTCCGAGGTCAAAGCTGAC
1 GAAAGTCTCCAAGGTCAAAGCTGAC
3420805 CAGTAAACTT
Statistics
Matches: 1440, Mismatches: 451, Indels: 246
0.67 0.21 0.12
Matches are distributed among these distances:
35 88 0.06
36 9 0.01
37 5 0.00
38 10 0.01
39 7 0.00
40 19 0.01
41 75 0.05
42 1123 0.78
43 96 0.07
44 7 0.00
45 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.19
Consensus pattern (42 bp):
GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGACTGAAGGTAA
Found at i:3418984 original size:84 final size:84
Alignment explanation
Indices: 3418837--3419495 Score: 511
Period size: 84 Copynumber: 7.9 Consensus size: 84
3418827 AGGTGAGGCT
* ** * * *
3418837 AGGTCAAAGCCAACAGGCATACTTGAGACGAGGCAGTCTCCAGGGTCAAAGTCGATA-GCTAGAC
1 AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCGATAGGC-AGAC
*
3418901 TAAGGGTAGGAAAGTCTCCA
65 TAAGGGTAAGAAAGTCTCCA
** * * * * * * * *
3418921 AGGTCAAAGCTGACAAGCAGACTTGAGATGAGATAGTCTCTAAGGTCAAAGTCAACAGGTAGACT
1 AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
*
3418986 TAGGGTAAGAAAG-CATCCA
66 AAGGGTAAGAAAGTC-TCCA
* * * * * * * * * * *
3419005 AGGTCAAAGTCGATAGGCAGAATTGAGGCGAGGCAGTCTCAAAGGTTAAAGTCGATAGGCAGATT
1 AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
*
3419070 GAA-GGTAAGAAAGTCTCTA
66 -AAGGGTAAGAAAGTCTCCA
* *
3419089 AGGTTAAAGCCGACAGGCAGACTTGAGGTGA-G--G----TAGGGTCAAAGCCGATAGGCAGACT
1 AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAGAC-
*
3419147 TGAA-GGTAAGAATGTCTCCA
65 T-AAGGGTAAGAAAGTCTCCA
* * * * *
3419167 GGGTCAAAACCAACAAGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCCATAGGAAGAC-
1 AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
*
3419231 AGAGGGTAAGAAAGACTCCA
66 A-AGGGTAAGAAAGTCTCCA
* * * * * * *
3419251 AGGTCAATGCCAATAGGCAGACTTAAGGTGAGATAGTCTCTAGGGTTAAAGCCAACAGGCAGACT
1 AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
*
3419316 GAGGGTAAGAAAGTCTCCA
66 AAGGGTAAGAAAGTCTCCA
* * * * * * * * * * *
3419335 GGGTTAAAGCCGACTGGGAGACTTGGGGTGAGGCAGTCTC-ATGGGTCAAAGCCAACAAGCAAAC
1 AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTA-GGGTCAAAGCCGATAGGCAGAC
* * *
3419399 TGAGGGTAAAAAAGTCT-TA
65 TAAGGGTAAGAAAGTCTCCA
** * * * *
3419418 AGGGTCATGGCCGATAGGCAGACTTGAGGTGAGGTAGCCT-TGAGGGTCAAAGCCGATAGGCAGT
1 A-GGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCT-AGGGTCAAAGCCGATAGGCAGA
* *
3419482 TTGAGGGTAAGAAA
64 CTAAGGGTAAGAAA
3419496 ATCTTCAGGG
Statistics
Matches: 458, Mismatches: 98, Indels: 38
0.77 0.16 0.06
Matches are distributed among these distances:
77 19 0.04
78 44 0.10
79 1 0.00
81 2 0.00
82 1 0.00
83 5 0.01
84 360 0.79
85 26 0.06
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (84 bp):
AGGTCAAAGCCAACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCGATAGGCAGACT
AAGGGTAAGAAAGTCTCCA
Found at i:3419187 original size:78 final size:77
Alignment explanation
Indices: 3419052--3419202 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 77
3419042 CTCAAAGGTT
* * * * * *
3419052 AAAGTCGATAGGCAGATTGAAGGTAAGAAAGTCTCTAAGGTTAAAGCCGACAGGCAGACTTGAGG
1 AAAGCCGATAGGCAGATTGAAGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGACTTGAGG
3419117 TGAGGTAGGGTC
66 TGAGGTAGGGTC
* *
3419129 AAAGCCGATAGGCAGACTTGAAGGTAAGAATGTCTCCAGGGTCAAAACCAACAAGCAGACTTGAG
1 AAAGCCGATAGGCAGA-TTGAAGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGACTTGAG
3419194 GTGAGGTAG
65 GTGAGGTAG
3419203 TCTCTAGGGT
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 15 0.23
78 50 0.77
ACGTcount: A:0.35, C:0.15, G:0.32, T:0.18
Consensus pattern (77 bp):
AAAGCCGATAGGCAGATTGAAGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGACTTGAGG
TGAGGTAGGGTC
Found at i:3419216 original size:246 final size:245
Alignment explanation
Indices: 3418878--3419367 Score: 599
Period size: 246 Copynumber: 2.0 Consensus size: 245
3418868 GGCAGTCTCC
* * * **
3418878 AGGGTCAAAGTCGATAGCTAGACTAAGGGTAGGAAAGTCTCCAAGGTCAAAGCTGACAAGCAGAC
1 AGGGTCAAAGCCGATAGCTAGACTAAGGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGAC
* * **
3418943 TTGAGATGAGATAGTCTCTAAGGTCAAAGTCAACAGGTAGACTTAGGGTAAGAAAG-CATCCAAG
66 TTGAGATGAGATAGTCTCTAAGGTCAAAGCCAACAGGAAGACAGAGGGTAAGAAAGAC-TCCAAG
* * * * * * * *
3419007 GTCAAAGTCGATAGGCAGAATTGAGGCGAGGCAGTCTCAAAGGTTAAAGTCGATAGGCAGATTGA
130 GTCAAAGCCAATAGGCAGAATTAAGGCGAGACAGTCTCAAAGGTTAAAGCCAACAGGCAGACTGA
*
3419072 AGGTAAGAAAGTCTCTAAGGTTAAAGCCGACAGGCAGACTTGAGGTGAGGT
195 AGGTAAGAAAGTCTCCAAGGTTAAAGCCGACAGGCAGACTTGAGGTGAGGT
* *
3419123 AGGGTCAAAGCCGATAGGC-AGACTTGAA-GGTAAGAATGTCTCCAGGGTCAAAACCAACAAGCA
1 AGGGTCAAAGCCGATA-GCTAGAC-T-AAGGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCA
* * * * *
3419186 GACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCCATAGGAAGACAGAGGGTAAGAAAGACTCCA
63 GACTTGAGATGAGATAGTCTCTAAGGTCAAAGCCAACAGGAAGACAGAGGGTAAGAAAGACTCCA
* * * * * *
3419251 AGGTCAATGCCAATAGGCAGACTTAAGGTGAGATAGTCTCTAGGGTTAAAGCCAACAGGCAGACT
128 AGGTCAAAGCCAATAGGCAGAATTAAGGCGAGACAGTCTCAAAGGTTAAAGCCAACAGGCAGACT
* * * * *
3419316 GAGGGTAAGAAAGTCTCCAGGGTTAAAGCCGACTGGGAGACTTGGGGTGAGG
193 GAAGGTAAGAAAGTCTCCAAGGTTAAAGCCGACAGGCAGACTTGAGGTGAGG
3419368 CAGTCTCATG
Statistics
Matches: 205, Mismatches: 36, Indels: 7
0.83 0.15 0.03
Matches are distributed among these distances:
245 19 0.09
246 183 0.89
247 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.31, T:0.18
Consensus pattern (245 bp):
AGGGTCAAAGCCGATAGCTAGACTAAGGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGAC
TTGAGATGAGATAGTCTCTAAGGTCAAAGCCAACAGGAAGACAGAGGGTAAGAAAGACTCCAAGG
TCAAAGCCAATAGGCAGAATTAAGGCGAGACAGTCTCAAAGGTTAAAGCCAACAGGCAGACTGAA
GGTAAGAAAGTCTCCAAGGTTAAAGCCGACAGGCAGACTTGAGGTGAGGT
Found at i:3419309 original size:330 final size:330
Alignment explanation
Indices: 3418838--3419454 Score: 747
Period size: 330 Copynumber: 1.9 Consensus size: 330
3418828 GGTGAGGCTA
* * * * * *
3418838 GGTCAAAGCCAACAGGCATACTTGAGACGAGGCAGTCTCCAGGGTCAAAGTCGATAGCTAGACTA
1 GGTCAAAACCAACAAGCAGACTTGAGACGAGGCAGTCTCCAGGGTCAAAGCCCATAGCAAGACTA
* * ** *
3418903 AGGGTAGGAAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTGAGATGAGATAGTCTCTAAGGTC
66 AGGGTAAGAAAGACTCCAAGGTCAAAGCCAACAAGCAGACTTAAGATGAGATAGTCTCTAAGGTC
* * * *
3418968 AAAGTCAACAGGTAGACTTAGGGTAAGAAAG-CATCCAAGGTCAAAGTCGA-TAGGCAGAATTGA
131 AAAGCCAACAGGCAGACTGAGGGTAAGAAAGTC-TCCAAGGTCAAAGCCGACT-GGCAGAATTGA
* * * * * * * * *
3419031 GGCGAGGCAGTCTCAAAGGTTAAAGTCGATAGGCAGATTGAAGGTAAGAAAGTCTCTAA-GGTTA
194 GGCGAGGCAGTCTCAAAGGTCAAAGCCAACAAGCAAACTGAAGGTAAAAAAGTCT-TAAGGGTCA
3419095 AAGCCGACAGGCAGACTTGAGGTGAGGTAGGGTCAAAGCCGATAGGCAGACTTGAAGGTAAGAAT
258 AAGCCGACAGGCAGACTTGAGGTGAGGTAGGGTCAAAGCCGATAGGCAGACTTGAAGGTAAGAAT
3419160 GTCTCCAG
323 GTCTCCAG
** * * *
3419168 GGTCAAAACCAACAAGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCCATAGGAAGAC-A
1 GGTCAAAACCAACAAGCAGACTTGAGACGAGGCAGTCTCCAGGGTCAAAGCCCATAGCAAGACTA
* * * * *
3419232 GAGGGTAAGAAAGACTCCAAGGTCAATGCCAATAGGCAGACTTAAGGTGAGATAGTCTCTAGGGT
66 -AGGGTAAGAAAGACTCCAAGGTCAAAGCCAACAAGCAGACTTAAGATGAGATAGTCTCTAAGGT
* * * * * *
3419297 TAAAGCCAACAGGCAGACTGAGGGTAAGAAAGTCTCCAGGGTTAAAGCCGACTGGGAGACTTGGG
130 CAAAGCCAACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACTGGCAGAATTGAG
* ** * **
3419362 GTGAGGCAGTCTCATGGGTCAAAGCCAACAAGCAAACTGAGGGTAAAAAAGTCTTAAGGGTCATG
195 GCGAGGCAGTCTCAAAGGTCAAAGCCAACAAGCAAACTGAAGGTAAAAAAGTCTTAAGGGTCAAA
*
3419427 GCCGATAGGCAGACTTGAGGTGAGGTAG
260 GCCGACAGGCAGACTTGAGGTGAGGTAG
3419455 CCTTGAGGGT
Statistics
Matches: 236, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
329 4 0.02
330 230 0.97
331 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (330 bp):
GGTCAAAACCAACAAGCAGACTTGAGACGAGGCAGTCTCCAGGGTCAAAGCCCATAGCAAGACTA
AGGGTAAGAAAGACTCCAAGGTCAAAGCCAACAAGCAGACTTAAGATGAGATAGTCTCTAAGGTC
AAAGCCAACAGGCAGACTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCCGACTGGCAGAATTGAGG
CGAGGCAGTCTCAAAGGTCAAAGCCAACAAGCAAACTGAAGGTAAAAAAGTCTTAAGGGTCAAAG
CCGACAGGCAGACTTGAGGTGAGGTAGGGTCAAAGCCGATAGGCAGACTTGAAGGTAAGAATGTC
TCCAG
Found at i:3419367 original size:168 final size:166
Alignment explanation
Indices: 3418749--3419512 Score: 564
Period size: 168 Copynumber: 4.6 Consensus size: 166
3418739 CTGAGTCTAT
* * * * * *
3418749 GAAAGTCTCCAAGGTCAAAGCTGACAGGCAGAC-TGAAAGTAAGAAAGTCCCTAGGGCCAAAGCC
1 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGATAGT-CTTAGGGTCAAAGCC
* * * * * * **
3418813 GACAGGTAGACTTGA-GGT--G--AGGCT--A-GGTCAAAGCCAACAGGCATACTTGAGACGAGG
64 AACAGGCAGAC-TGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGACTGGCAGACTTGAGGTGAGG
* * * *
3418870 CAGTCTCCAGGGTCAAAGTCGATAGCTAGACTA-AGGGTAG
128 CAGTCT-CAGGGTCAAAGCCCATAGCAAGAC-AGAGGGTAA
* * * * *
3418910 GAAAGTCTCCAAGGTCAAAGCTGACAAGCAGACTTGAGATGAGATAGTCTCTAAGGTCAAAGTCA
1 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGATAGTCT-TAGGGTCAAAGCCA
* * * * * *
3418975 ACAGGTAGACTTAGGGTAAGAAAG-CATCCAAGGTCAAAGTCGA-TAGGCAGAATTGAGGCGAGG
65 ACAGGCAGACTGAGGGTAAGAAAGTC-TCCAGGGTCAAAGCCGACT-GGCAGACTTGAGGTGAGG
* * * * ** *
3419038 CAGTCTCAAAGGTTAAAGTCGATAGGC-AGATTGAAGGTAA
128 CAGTCTC-AGGGTCAAAGCCCATA-GCAAGACAGAGGGTAA
* * *
3419078 GAAAGTCTCTAAGGTTAAAGCCGACAGGCAGACTTGAGGTGAG---G---TAGGGTCAAAGCCGA
1 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGATAGTCTTAGGGTCAAAGCCAA
* * * * * ** *
3419137 TAGGCAGACTTGAAGGTAAGAATGTCTCCAGGGTCAAAACCAACAAGCAGACTTGAGGTGAGGTA
66 CAGGCAGAC-TGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGACTGGCAGACTTGAGGTGAGGCA
*
3419202 GTCTCTAGGGTCAAAGCCCATAGGAAGACAGAGGGTAA
130 GTCTC-AGGGTCAAAGCCCATAGCAAGACAGAGGGTAA
* * * * * *
3419240 GAAAGACTCCAAGGTCAATGCCAATAGGCAGACTTAAGGTGAGATAGTCTCTAGGGTTAAAGCCA
1 GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGATAGTCT-TAGGGTCAAAGCCA
* * *
3419305 ACAGGCAGACTGAGGGTAAGAAAGTCTCCAGGGTTAAAGCCGACTGGGAGACTTGGGGTGAGGCA
65 ACAGGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGACTGGCAGACTTGAGGTGAGGCA
*
3419370 GTCTCATGGGTCAAAGCCAACA-AGCAA-ACTGAGGGTAA
130 GTCTCA-GGGTCAAAGCC--CATAGCAAGACAGAGGGTAA
* * ** * * *
3419408 AAAAGTCT-TAAGGGTCATGGCCGATAGGCAGACTTGAGGTGAGGTAGCCTTGAGGGTCAAAGCC
1 GAAAGTCTCCAA-GGTCAAAGCCGACAGGCAGACTTGAGGTGAGATAGTCTT-AGGGTCAAAGCC
* * ** * * *
3419472 GATAGGCAGTTTGAGGGTAAGAAAATCTTCAGGGTTAAAGC
64 AACAGGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGC
3419513 TGACAGGTAT
Statistics
Matches: 480, Mismatches: 92, Indels: 55
0.77 0.15 0.09
Matches are distributed among these distances:
160 3 0.01
161 83 0.17
162 105 0.22
163 2 0.00
164 1 0.00
165 5 0.01
167 6 0.01
168 246 0.51
169 27 0.06
170 2 0.00
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.18
Consensus pattern (166 bp):
GAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGATAGTCTTAGGGTCAAAGCCAA
CAGGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGACTGGCAGACTTGAGGTGAGGCAG
TCTCAGGGTCAAAGCCCATAGCAAGACAGAGGGTAA
Found at i:3419880 original size:84 final size:84
Alignment explanation
Indices: 3419792--3424001 Score: 1116
Period size: 84 Copynumber: 50.8 Consensus size: 84
3419782 CGAGGTAATT
* * ** * * * * *
3419792 TCTAGGGTCAAAGCCAAAAGGTAGACTTTTGTTGAGGCAGTCTCTAGGGTCAATGTCGACAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
3419857 GACTGAAGGTAAGAAAATC
66 GACTGAAGGTAAGAAAATC
** ** * * * *
3419876 TCTAGGGTCAAAGCCTTTAGGCAGACTTGAGATGAGGTTGTCTCCATGGTCAAAGTCGACATGTA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
3419941 GACTG-AGAGT-AGAAAAGTC
66 GACTGAAG-GTAAGAAAA-TC
* * * ** * * * * * *
3419960 TCCAGGGTCAAAGTCGATAGATAAACTTGACATAAGACAGTCTCCAAGGTCAAAGTCGATAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* * *
3420025 AACTAAAAGTAA-AAAAGTC
66 GACTGAAGGTAAGAAAA-TC
* * * * ***
3420044 TCTAGGGTCAAAGCCGACAGGCAGAC-TGAAAGTAAAAAAGTCTCCAAGGTCAAAGCCGACAGGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGA-TGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* *
3420108 AGACTTAAGGT--G---A-G
65 AGACTGAAGGTAAGAAAATC
* * * * * * *
3420122 GC-AGGGTCAAAGCCAACAAGCATACTTGAGATGAGGCAGTCT-CTAGTGTCAAAGTCGATAGGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAG-GTCAAAGCCGACAGGC
* * *
3420185 AGTCTGAAGGTAGGAAAGTC
65 AGACTGAAGGTAAGAAAATC
* *** * * *
3420205 TCTAAGGTCAAAGTTGACAAGTAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* **
3420270 GACTGAGGGTAAGAAAGCC
66 GACTGAAGGTAAGAAAATC
* * * * * * * * * * * *
3420289 TCCAAGGTCAATGTCGATAGGGAGACTTGAGGTGAGGCAGTGTCTAAGGTTAAAGCCGATAGGTA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
*
3420354 GACTGAAGGTAAGAAATTC
66 GACTGAAGGTAAGAAAATC
* * * * * *
3420373 TCTAGGGTTAAAGCCGACAGGCAGACTTGAGGTGAGGCA---T----GGTCAAAGCCAATAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
*
3420431 GACTTGAAGGTAAGAAAGTC
66 GAC-TGAAGGTAAGAAAATC
* * * * * * *
3420451 TCTAGGGTCAAAGCTGACTA-GCAAACTTGAGGTGAGGCAGTCTCCAAGGACAAAGTCGACAGGT
1 TCTAGGGTCAAAGC-CAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* * *
3420515 AGACT-AAGGGTGAGGAAGTC
65 AGACTGAA-GGTAAGAAAATC
* * * * ** * * ** * * *
3420535 TCCAAGTTCAAAGCCAACAGGTTGACTTAAGGTGAGATAGTCTCTAGGGTCAAAGCCGATAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* *
3420600 GATTGAGGGTAAGAAAATC
66 GACTGAAGGTAAGAAAATC
* * * * * * * * **
3420619 TCTATGGTCAAAGTCGACT-GGCATACTTAAGATAAGGTAGTTTCCAAGGTCAAAGCCGACAAAC
1 TCTAGGGTCAAAG-CCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* * * *
3420683 AGACAGAGGGTAAGAAAGTG
65 AGACTGAAGGTAAGAAAATC
* * ** * * * * * * ** * *
3420703 TCAATGGTCAAAGCTGACAAGCAAACTTGAGGTGAGGTAGCCTTAAAGGTCAAAGTCGACAGGTA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
3420768 GACT-AAGGGTAAGAAAATC
66 GACTGAA-GGTAAGAAAATC
* * ** * * * * * * * *
3420787 TC-CGAGGTCAAAGCTGACCA-GTAAACTTGAGATGAGACGGTCTCCAAGGCCAAAGTCAATAGG
1 TCTAG-GGTCAAAGC-CAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGG
* * * *
3420850 TAGAATGAAGGAAAGAAAGTC
64 CAGACTGAAGGTAAGAAAATC
* * * * * * * **
3420871 TCTAGGGTCAAAGCCGACAGACAGACTTGAGGTGA-G--G--T--ATGGTCAAAGCCAACAAGTG
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* *
3420929 GACTTAAGGATAAGAAAGTC
66 GACTGAAGG-TAAGAAAATC
* * * * * * * * * * * * * * *
3420949 TCCAGCGTCAAAGTCGACAAGCAGACTTTAGGTAAGGCAATCTTCAGGGTCAAAGCTGATAGGAA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* ***
3421014 GACTTG-AGGTTAGGCTATC
66 GAC-TGAAGGTAAGAAAATC
* * * * * * ** * * *** * * * * * *
3421033 TCCAAGGTCAAAGCCGACAAGCATACTAAAGGTAAAAAACTCTCTAGGGTTAAAGCCGATAAGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* *
3421098 GACTTG-AGGTGAAG-TACTC
66 GAC-TGAAGGT-AAGAAAATC
* * * * * * * * * * * *
3421117 TCCAAGCTCAAAGCTAAAAGGCAAACTTGTGTTGAGGCAATCT-CAGGGTCAAAGTCGACAAGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
*
3421181 GACTGAGGGT-AGAAAAGTC
66 GACTGAAGGTAAGAAAA-TC
* * ** * * * * * * * *
3421200 TTTGGGGTCAAAGCTGACAGGTAGACTTGAGATAAGGTAGTCTCTAA-GTCCAAAGCTGATAAGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGT-CAAAGCCGACAGGC
* * * *
3421264 AGATTGAGGGTAAGAAAGTT
65 AGACTGAAGGTAAGAAAATC
* * * * * * * * * * * *
3421284 TCCAGGATGAAAGCTGACTA-GCAAAC-T----TGAGGCCGTTTTCAGGGTCAAAGCCGACAAGT
1 TCTAGGGTCAAAGC-CAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
3421343 AGACT-AAGGGTAA-AAAAGTC
65 AGACTGAA-GGTAAGAAAA-TC
* * * * * * * *
3421363 TCAAGGGTCACATCCGATAAGCAGACTTGAGGTGAGGCAGGCGT--AAGGGTCAAAGCCGATAGG
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTC-TCCAA-GGTCAAAGCCGACAGG
* *
3421426 CAGATTGAGGGTAAGAAAATC
64 CAGACTGAAGGTAAGAAAATC
* * * ** * * * *
3421447 TCCAAGGTCAAAGTCAACTA-ATAGACTTGAGATGAGACAGTCTCCAAGGTCAAAGTCGATAGGT
1 TCTAGGGTCAAAGCCAA-TAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* *
3421511 AGAGTAAAGGTAAGAAAATC
65 AGACTGAAGGTAAGAAAATC
* ** * * * * *
3421531 TCTAAGGTCAAAGTTAATTGGCAGACTTGAGATG-TG--G--T--AGGGTCAAAGCCGATAGGTA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* *
3421589 GACTTGAGGGTAAGAAAGTC
66 GAC-TGAAGGTAAGAAAATC
* * ** * * * * * * * * *
3421609 TCTAAGGTCAAAACTGACAAGCAGACTTG-GAGTGAGGCAATCTCTAGGGTCAAAAACCAATAAG
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGA-TGAGGCAGTCTCCAAGGTC-AAAGCCGACAGG
* * **
3421673 CAGACTTAGGGTAAGAAGGTC
64 CAGACTGAAGGTAAGAAAATC
* * *** * * * * * * * * *
3421694 TCCAAGGTCAAAGTTGATAGGTAGACCTGAGGTGAAGCAGTCTCTAAGGTCAATGTCAAAAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* * *
3421759 GACTTAGGGTAAGAAAGTC
66 GACTGAAGGTAAGAAAATC
* ** * * * * * *
3421778 TCTAAGGTCAAAGCTGATAGGCAGACTTGAGATGAGGTAATCTCTAGGGTTAAAGCCGATAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* *
3421843 GACTAAAGGTAA-AAAAGTT
66 GACTGAAGGTAAGAAAA-TC
* * * * * * *
3421862 TCTAAGGTCAAAACCAATAGGCAGACTTGAGATGAGGTAGTCTTCAGGGCCAAAGCTGACAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* ***
3421927 GACTTG-AGGTTAGGCTATC
66 GAC-TGAAGGTAAGAAAATC
* * * * * * * * ** ** *
3421946 CCTAAGGTCAAAGTCTACAAGCAGA-TT-AAAGGGAAGAAAGTCTTTAGGGTCAAA----AC---
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGA-TG-AGGCAGTCTCCAAGGTCAAAGCCGACAGG
* **
3422002 C---TTGATCGTAA-AAAAGTC
64 CAGACTGAAGGTAAGAAAA-TC
* * * * * * * * * * *
3422020 TCTAGGGTCAAATCCGACAGACAAACTTGAGGTAAGGTATTCTCCAAGGTCAAAGTCGACAAGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* * *
3422085 GACT-AAGGGTAGGAAAGTT
66 GACTGAA-GGTAAGAAAATC
* * * * * * * * * *
3422104 TCCAAGGTCAAAGCCAAAAGGTAGACTTGAGTTGAGGTAGT-TGCTATGGTCAAAGCTGACAAGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCT-CCAAGGTCAAAGCCGAC-AGG
* *
3422168 CA-ACT-AGGGATAAGAAAGTC
64 CAGACTGAAGG-TAAGAAAATC
* * * * * * * ***
3422188 TCTTA-GGTCAAAGCCGACAGGCAGACTAGAGGTGAGGTAATCTCCAAAGTCAAAGCC-A-AAAA
1 TC-TAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* *
3422250 ATGAACTGAGGGTATA-AAAGTC
65 A-G-ACTGAAGGTA-AGAAAATC
* * * * * *
3422272 TCTAAGGTCAAAGCTAACAGGTAGACTTGAGATAAGAG-AGTCTCC-A--T---AGCCGACAAGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAG-GCAGTCTCCAAGGTCAAAGCCGACAGGC
* *
3422330 AGATTG-AGAGCAAGAAAATC
65 AGACTGAAG-GTAAGAAAATC
* * * * * * * * ** * * * *
3422350 TCCAGGGTCAATGTCGATTGGTAGATTTGAGATGCGATAGTTTCTAAGGTCAAAACCGATAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* * *
3422415 GGCTAAAGGTAAGAAAGTC
66 GACTGAAGGTAAGAAAATC
* * * * * * * * * * *
3422434 TTTAAGGTCAAAACCGACAGGCAGACTTGAGGTG-TG--G--T--AGGGTCAAAGCTGACCGGTA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
*
3422492 GACTTGAAGGTAAGAAAGTC
66 GAC-TGAAGGTAAGAAAATC
* * * * * * ** * * * *
3422512 TTTAGAGTAAAAGCCGACAGGCAGACTTGAGGTGAGGCAGTCTTTAGGGTCAAAGCTGACAAGTA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* **
3422577 GACTTAAGGTAAGAAGGTC
66 GACTGAAGGTAAGAAAATC
* * * * * * * * * * *
3422596 TCCAAGGTCAAAGTCGACAGGTAGACTTGAGGTGAGGCAGTCTCCATGGTCAATGTCGAGAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
3422661 GACT-AAGGGTAA-AAAAGTC
66 GACTGAA-GGTAAGAAAA-TC
* * * * * * * * * *
3422680 TCCAAGG-CTAAAGCTAACAGGCAGACATGAGATAAGGTAGTCTCTATGGTCAAAGCCGACACGC
1 TCTAGGGTC-AAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* * *
3422744 AGAGT-AAGGGTAGGAAAGTC
65 AGACTGAA-GGTAAGAAAATC
* * * * ** * * * *
3422764 TCCAGGGTCAAAACCATTAAGCAGACTTGAGATGAGATAGTCCCCAAGGACAAAGCTCG-TAGGT
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGC-CGACAGGC
* * ****
3422828 AGGCTTG-AGGTTAGGCTGTC
65 AGAC-TGAAGGTAAGAAAATC
* * * * * * ** *
3422848 TCTAGGGTCAAAGTCGACAGGCTGAC-TGAAGGTAAGAAAGTCTCCAAGGTCAAATCCGACAGGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTG-AGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* * ** *
3422912 AGACTTG-AGTTGAGGTAGTC
65 AGAC-TGAAGGTAAGAAAATC
* * * * * *
3422932 TCTAGGGTCAAAACCATTAGGCAGACTTGAGATGAGGCAGTCTCCATGGTCAATGTCGAGAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* *
3422997 GAGT-AAGGGTAAGAAAGTC
66 GACTGAA-GGTAAGAAAATC
* * * * * * * * * * *
3423016 TCCAAGGTTAAAGCCGACAAGTAGACATGAGATGAGGTAGTCTCTAAGGTCAAAGTCGACAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* * *
3423081 GACTGAGGGTAGGAAAGTC
66 GACTGAAGGTAAGAAAATC
* * * * * *
3423100 TCCAGGGTCAAAACCATTAGGCAGACTTGAGATGAGGTAGTCCCCAAGGTCAAAGCTC-ACAGGT
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGC-CGACAGGC
* * ****
3423164 AGGCTTG-AGGTTAGGTTGTC
65 AGAC-TGAAGGTAAGAAAATC
** * * * * * ** * *
3423184 TCTAGGGTCAAAGCTGACAGGCTGAC-AGAAGGTAAGAAAGTCTCCAAGGTCATATCCGACAGGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTG-AGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* * * ** *
3423248 AGACTTAAGTTGAGGTAGTC
65 AGACTGAAGGTAAGAAAATC
** * * * * * *
3423268 TCTAGGGTCAAAATCGATAGGCAGAC-TGAG-GGTAGGAAAGTCTCTAGGGTCAAAGCCGACAAG
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATG-AGG-CAGTCTCCAAGGTCAAAGCCGACAGG
* * *
3423331 TAGATTG-AGGTTAAGAAAGTC
64 CAGACTGAAGG-TAAGAAAATC
* * * * * * * * * * *
3423352 TCTAAGGTCAAAGTCGACTA-GCAAACTTAAGATGAGGTAGTCTCCAGGGTCAAAGTCGATATGA
1 TCTAGGGTCAAAG-CCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGC
* *
3423416 AGACTGAGGGTAAGAAAGTC
65 AGACTGAAGGTAAGAAAATC
* * * * * * * *
3423436 TCAAGGGTCAAA-CCGATAGGCAGACTTGAGGTGAGGCAGCCT-AAAGGGCCAATGCCGACAGAC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAA-GGTCAAAGCCGACAGGC
* *
3423499 AAACTGAGGGTAAGAAAATC
65 AGACTGAAGGTAAGAAAATC
*** * * * ** * * * * ** *
3423519 TCTAGGGTCAAAGTTGACAAGTAGACAGGCGATGTGAG-AGTCTCTAAGGTGAAAATCGACAGGT
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAG-GCAGTCTCCAAGGTCAAAGCCGACAGGC
* *
3423583 AGACTAAAGGTAAGAAAGTC
65 AGACTGAAGGTAAGAAAATC
* ** * * * * * * *
3423603 TCTAAGGTCAAAGCTGACAAGCAGACTTGAGGTGA-G-A---T--AGGGTCAAAGCGGATAGGTA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
*
3423661 GACTTGAGGGTAAGAAAGCATC
66 GAC-TGAAGGTAAGAAA--ATC
* * * * * * * *
3423683 -C-AGGGTCAAAGCCGACAAGCAGACTTGAGGTAAGGCAATCT-CTAGGATCAAAGCCAACAGGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGG-TCAAAGCCGACAGGC
* * *
3423745 AGACTTAGGGTAAGAAAGTC
65 AGACTGAAGGTAAGAAAATC
** * * * * * *
3423765 T-TCAGGGTCAAAGTTAATCGGCAGACTT-ATGGTGAGGCAGTCTCCAAGGTCAATGCTGAAAGA
1 TCT-AGGGTCAAAGCCAATAGGCAGACTTGA-GATGAGGCAGTCTCCAAGGTCAAAGCCGACAGG
* * *
3423828 CAAACTGAGGGTAAGAAAGTC
64 CAGACTGAAGGTAAGAAAATC
* * * * * * * *
3423849 ACCAAGGTCAAAGCCAACAGGTAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCCGACAGGCA
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
* *
3423914 GACTGAGGGT-AGAAAAGTG
66 GACTGAAGGTAAGAAAA-TC
* * * * * * * * * *
3423933 TCCAGGGACAAAACCAACAGGCAGACATGAGATGTGGTAGTC-CTTAGGGTCAAAGCTGACAGGC
1 TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTC-CAAGGTCAAAGCCGACAGGC
3423997 AGACT
65 AGACT
3424002 TGAGGTTAGG
Statistics
Matches: 3046, Mismatches: 896, Indels: 368
0.71 0.21 0.09
Matches are distributed among these distances:
73 3 0.00
74 36 0.01
75 2 0.00
76 4 0.00
77 147 0.05
78 263 0.09
79 57 0.02
80 12 0.00
81 13 0.00
82 13 0.00
83 183 0.06
84 2087 0.69
85 210 0.07
86 16 0.01
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.20
Consensus pattern (84 bp):
TCTAGGGTCAAAGCCAATAGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCA
GACTGAAGGTAAGAAAATC
Found at i:3420157 original size:35 final size:35
Alignment explanation
Indices: 3420091--3420160 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
3420081 AAGTCTCCAA
* * *
3420091 GGTCAAAGCCGACAGGCAGACTTAAGGTGAGGCAG
1 GGTCAAAGCCAACAAGCAGACTTAAGATGAGGCAG
* *
3420126 GGTCAAAGCCAACAAGCATACTTGAGATGAGGCAG
1 GGTCAAAGCCAACAAGCAGACTTAAGATGAGGCAG
3420161 TCTCTAGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.34, C:0.20, G:0.33, T:0.13
Consensus pattern (35 bp):
GGTCAAAGCCAACAAGCAGACTTAAGATGAGGCAG
Found at i:3420411 original size:168 final size:169
Alignment explanation
Indices: 3419824--3423944 Score: 1609
Period size: 168 Copynumber: 24.9 Consensus size: 169
3419814 AGACTTTTGT
* * * * *
3419824 TGAGGCAGTCTCTAGGGTCAATGTCGACAGGCAGACTGAAGGTAAGAAAATCTCTAGGGTCAAAG
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
*** * * * * * * *
3419889 CCTTTAGGCAGACTTGAGATGAGGTTGTCTCCATGGTCAAAGTCGACATGTAGACTGAGAGT-AG
66 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAAG
** *
3419953 AAAAGTCTCCAGGGTCAAAGTCGA-TAGATAAACTTGACA
131 -AAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * *
3419992 TAAGACAGTCTCCAAGGTCAAAGTCGATAGGCAAACTAAAAGTAAAAAAGTCTCTAGGGTCAAAG
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * *** * *
3420057 CCGACAGGCAGAC-TGAAAGTAAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTAAGGT--
66 CCGACAGGCAGACTTG-AGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAA
* * * * *
3420119 G--AG---GCAGGGTCAAAGCCAAC-AAGCATACTTGAGA
130 GAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * *
3420153 TGAGGCAGTCT-CTAGTGTCAAAGTCGATAGGCAGTCTGAAGGTAGGAAAGTCTCTAAGGTCAAA
1 TGAGGCAGTCTCCAAG-GTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
** * * * *
3420217 GTTGACAAGTAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAA
65 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAA
* * * * * *
3420282 GAAAGCCTCCAAGGTCAATGTCGA-TAGGGAGACTTGAGG
130 GAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * * *
3420321 TGAGGCAGTGTCTAAGGTTAAAGCCGATAGGTAGACTGAAGGTAAGAAATTCTCTAGGGTTAAAG
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * *
3420386 CCGACAGGCAGACTTGAGGTGA-G--G----CATGGTCAAAGCCAATAGGCAGACTTGAAGGTAA
66 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGGTAA
* *
3420444 GAAAGTCTCTAGGGTCAAAG-CTGACTA-GCAAACTTGAGG
130 GAAAGTCTCCAGGGTCAAAGTC-GACTAGGCAAACTTGAGA
* * * * * * * *
3420483 TGAGGCAGTCTCCAAGGACAAAGTCGACAGGTAGACT-AAGGGTGAGGAAGTCTCCAAGTTCAAA
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTCAAA
* ** * * * * * *
3420547 GCCAACAGGTTGACTTAAGGTGAGATAGTCTCTAGGGTCAAAGCCGATAGGCAGATTGAGGGTAA
65 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAA
* * * * *
3420612 GAAAATCTCTATGGTCAAAGTCGACT-GGCATACTTAAGA
130 GAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * ** * * * * *
3420651 TAAGGTAGTTTCCAAGGTCAAAGCCGACAAACAGACAGAGGGTAAGAAAGTGTCAATGGTCAAAG
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * * ** * * *
3420716 CTGACAAGCAAACTTGAGGTGAGGTAGCCTTAAAGGTCAAAGTCGACAGGTAGACTAAGGGTAAG
66 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAAG
* * *
3420781 AAAATCTCC-GAGGTCAAAG-CTGACCA-GTAAACTTGAGA
131 AAAGTCTCCAG-GGTCAAAGTC-GACTAGGCAAACTTGAGA
* * * * * * *
3420819 TGAGACGGTCTCCAAGGCCAAAGTCAATAGGTAGAATGAAGGAAAGAAAGTCTCTAGGGTCAAAG
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * ** * *
3420884 CCGACAGACAGACTTGAGGTGAGGTA---T----GGTCAAAGCCAACAAGTGGACTTAAGGATAA
66 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGGTAA
* * * * *
3420942 GAAAGTCTCCAGCGTCAAAGTCGAC-AAGCAGACTTTAGG
130 GAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * * ** * *
3420981 TAAGGCAATCTTCAGGGTCAAAG-CTGATAGGAAGACTTG-AGGTTAGGCTA-TCTCCAAGGTCA
1 TGAGGCAGTCTCCAAGGTCAAAGTC-GATAGGCAGAC-TGAAGG-TAAGAAAGTCTCTAGGGTCA
* * ** * *** * * * * * *
3421043 AAGCCGACAAGCATACTAAAGGTAAAAAACTCTCTAGGGTTAAAGCCGATAAGCAGACTTGA-GG
63 AAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGG
* * * * * ** * *
3421107 TGAAG-TACTCTCCAAGCTCAAAG-CTAAAAGGCAAACTTGTGT
127 T-AAGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * * *
3421149 TGAGGCAATCT-CAGGGTCAAAGTCGACAAGCAGACTGAGGGT-AGAAAAGTCTTTGGGGTCAAA
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAG-AAAGTCTCTAGGGTCAAA
* * * * * * * * *
3421212 GCTGACAGGTAGACTTGAGATAAGGTAGTCTCTAA-GTCCAAAGCTGATAAGCAGATTGAGGGTA
65 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGT-CAAAGCCGACAGGCAGACTGAGGGTA
* * *
3421276 AGAAAGTTTCCAGGATGAAAG-CTGACTA-GCAAAC-T----
129 AGAAAGTCTCCAGGGTCAAAGTC-GACTAGGCAAACTTGAGA
* * * * * * * * * * *
3421311 TGAGGCCGTTTTCAGGGTCAAAGCCGACAAGTAGACT-AAGGGTAAAAAAGTCTCAAGGGTCACA
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTCAAA
* * * * * * *
3421375 TCCGATAAGCAGACTTGAGGTGAGGCAGGCGT--AAGGGTCAAAGCCGATAGGCAGATTGAGGGT
65 GCCGACAGGCAGACTTGAGGTGAGGTAGTC-TCCAA-GGTCAAAGCCGACAGGCAGACTGAGGGT
* * * ** *
3421438 AAGAAAATCTCCAAGGTCAAAGTCAACTA-ATAGACTTGAGA
128 AAGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * *
3421479 TGAGACAGTCTCCAAGGTCAAAGTCGATAGGTAGAGTAAAGGTAAGAAAATCTCTAAGGTCAAAG
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
*** ** * * * *
3421544 TTAATTGGCAGACTTGAGATGTGGTAG-------GGTCAAAGCCGATAGGTAGACTTGAGGGTAA
66 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGGTAA
* * * * *
3421602 GAAAGTCTCTAAGGTCAAA-ACTGAC-AAGCAGACTTG-GA
130 GAAAGTCTCCAGGGTCAAAGTC-GACTAGGCAAACTTGAGA
* * * ** * * * * * * *
3421640 GTGAGGCAATCTCTAGGGTCAAAAACCAATAAGCAGACTTAGGGTAAGAAGGTCTCCAAGGTCAA
1 -TGAGGCAGTCTCCAAGGTC-AAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAA
** * * * * * * * * * * *
3421705 AGTTGATAGGTAGACCTGAGGTGAAGCAGTCTCTAAGGTCAATGTCAAAAGGCAGACTTAGGGTA
64 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTA
* * *
3421770 AGAAAGTCTCTAAGGTCAAAG-CTGA-TAGGCAGACTTGAGA
129 AGAAAGTCTCCAGGGTCAAAGTC-GACTAGGCAAACTTGAGA
* * * * * * * * * * *
3421810 TGAGGTAATCTCTAGGGTTAAAGCCGATAGGCAGACTAAAGGTAAAAAAGTTTCTAAGGTCAAAA
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * * * * * * *
3421875 CCAATAGGCAGACTTGAGATGAGGTAGTCTTCAGGGCCAAAGCTGACAGGCAGACTTGAGGTTAG
66 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGGTAA
** * * * *
3421940 GCTA-TC-CCTAAGGTCAAAGTCTAC-AAGCAGA-TT-A-A
130 GAAAGTCTCC-AGGGTCAAAGTCGACTAGGCAAACTTGAGA
** * ** *
3421975 --AGG--G-----AA-G--AAAGTCTTTAGGGTCAAAACCTTGATCGTAAAAAAGTCTCTAGGGT
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATA-GG-C-AGA-C-TGAAGGTAAGAAAGTCTCTAGGGT
* * * * * * * *
3422028 CAAATCCGACAGACAAACTTGAGGTAAGGTATTCTCCAAGGTCAAAGTCGACAAGCAGACTAAGG
61 CAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGG
* * * * ** * * *
3422093 GTAGGAAAGTTTCCAAGGTCAAAG-CCAAAAGGTAGACTTGAGT
126 GTAAGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * *
3422136 TGAGGTAGT-TGCTATGGTCAAAG-CTGACAAGCCA-ACT-AGGGATAAGAAAGTCTCTTA-GGT
1 TGAGGCAGTCT-CCAAGGTCAAAGTC-GA-TAGGCAGACTGAAGG-TAAGAAAGTCTC-TAGGGT
* * * ***
3422196 CAAAGCCGACAGGCAGACTAGAGGTGAGGTAATCTCCAAAGTCAAAGCC-A-AAAAATGAACTGA
61 CAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCA-G-ACTGA
* * * * *
3422259 GGGTATA-AAAGTCTCTAAGGTCAAAG-CTAAC-AGGTAGACTTGAGA
124 GGGTA-AGAAAGTCTCCAGGGTCAAAGTC-GACTAGGCAAACTTGAGA
* * * * * * * *
3422304 TAAGAG-AGTCTCC-A--T---AGCCGACAAGCAGATTG-AGAGCAAGAAAATCTCCAGGGTCAA
1 TGAG-GCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAG-GTAAGAAAGTCTCTAGGGTCAA
* * ** * * * * * * * * * * * *
3422361 TGTCGATTGGTAGATTTGAGATGCGATAGTTTCTAAGGTCAAAACCGATAGGCAGGCTAAAGGTA
64 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTA
** * ** * *
3422426 AGAAAGTCTTTAAGGTCAAAACCGAC-AGGCAGACTTGAGG
129 AGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * ** * * * *
3422466 TG-TG--G--T--AGGGTCAAAG-CTGACCGGTAGACTTGAAGGTAAGAAAGTCTTTAGAGTAAA
1 TGAGGCAGTCTCCAAGGTCAAAGTC-GATAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* ** * * * * * *
3422523 AGCCGACAGGCAGACTTGAGGTGAGGCAGTCTTTAGGGTCAAAGCTGACAAGTAGACTTAAGGTA
64 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTA
* * * * *
3422588 AGAAGGTCTCCAAGGTCAAAGTCGAC-AGGTAGACTTGAGG
129 AGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * *
3422628 TGAGGCAGTCTCCATGGTCAATGTCGAGAGGCAGACT-AAGGGTAAAAAAGTCTCCAAGG-CTAA
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTC-AA
** * * * * * * * *
3422691 AGCTAACAGGCAGACATGAGATAAGGTAGTCTCTATGGTCAAAGCCGACACGCAGAGTAAGGGTA
64 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTA
* * * * * *
3422756 GGAAAGTCTCCAGGGTCAAA-ACCATTAAGCAGACTTGAGA
129 AGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
** * * * * * ***
3422796 TGAGATAGTCCCCAAGGACAAAGCTCG-TAGGTAGGCTTG-AGGTTAGGCTGTCTCTAGGGTCAA
1 TGAGGCAGTCTCCAAGGTCAAAG-TCGATAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * * ** * *
3422859 AGTCGACAGGCTGAC-TGAAGGTAAGAAAGTCTCCAAGGTCAAATCCGACAGGCAGACTTGA-GT
64 AGCCGACAGGCAGACTTG-AGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGAC-TGAGGG
* ** * * * * *
3422922 TGAGGTAGTCTCTAGGGTCAAA-ACCATTAGGCAGACTTGAGA
127 TAAGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * * *
3422964 TGAGGCAGTCTCCATGGTCAATGTCGAGAGGCAGAGT-AAGGGTAAGAAAGTCTCCAAGGTTAAA
1 TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTCAAA
* * * * * * *
3423028 GCCGACAAGTAGACATGAGATGAGGTAGTCTCTAAGGTCAAAGTCGACAGGCAGACTGAGGGTAG
65 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAA
* * * *
3423093 GAAAGTCTCCAGGGTCAAA-ACCATTAGGCAGACTTGAGA
130 GAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * * ***
3423132 TGAGGTAGTCCCCAAGGTCAAAGCTC-ACAGGTAGGCTTG-AGGTTAGGTTGTCTCTAGGGTCAA
1 TGAGGCAGTCTCCAAGGTCAAAG-TCGATAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * * * ** * * * * *
3423195 AGCTGACAGGCTGAC-AGAAGGTAAGAAAGTCTCCAAGGTCATATCCGACAGGCAGACTTAAGTT
64 AGCCGACAGGCAGACTTG-AGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGT
* ** * * *
3423259 GAGGTAGTCTCTAGGGTCAAAATCGA-TAGGCAGAC-TGAG-
128 AAGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * * * * * *
3423298 GGTAGGAAAGTCTCTAGGGTCAAAGCCGACAAGTAGATTG-AGGTTAAGAAAGTCTCTAAGGTCA
1 TG-AGG-CAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGG-TAAGAAAGTCTCTAGGGTCA
* * * * * * * * *
3423362 AAGTCGACTA-GCAAACTTAAGATGAGGTAGTCTCCAGGGTCAAAGTCGATATGAAGACTGAGGG
63 AAGCCGAC-AGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGG
* * * *
3423426 TAAGAAAGTCTCAAGGGTCAAA-CCGA-TAGGCAGACTTGAGG
127 TAAGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
* * * * * * * * * *
3423467 TGAGGCAGCCT-AAAGGGCCAATGCCGACAGACAAACTGAGGGTAAGAAAATCTCTAGGGTCAAA
1 TGAGGCAGTCTCCAA-GGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
** * * ** * * * ** * * *
3423531 GTTGACAAGTAGACAGGCGATGTGA-G-AGTCTCTAAGGTGAAAATCGACAGGTAGACTAAAGGT
65 GCCGACAGGCAGAC--TTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGT
* * * * *
3423594 AAGAAAGTCTCTAAGGTCAAAG-CTGAC-AAGCAGACTTGAGG
128 AAGAAAGTCTCCAGGGTCAAAGTC-GACTAGGCAAACTTGAGA
* * * *
3423635 TGA-G-A---T--AGGGTCAAAG-CGGATAGGTAGACTTGAGGGTAAGAAAG-CATCCAGGGTCA
1 TGAGGCAGTCTCCAAGGTCAAAGTC-GATAGGCAGAC-TGAAGGTAAGAAAGTC-TCTAGGGTCA
* * * * * * *
3423691 AAGCCGACAAGCAGACTTGAGGTAAGGCAATCT-CTAGGATCAAAGCCAACAGGCAGACTTAGGG
63 AAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGG-TCAAAGCCGACAGGCAGACTGAGGG
* * * * * *
3423755 TAAGAAAGTCTTCAGGGTCAAAGT-TAATCGGCAGACTT-ATGG
127 TAAGAAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGA-GA
* * * * * * * *
3423797 TGAGGCAGTCTCCAAGGTCAATG-CTGAAAGACAAACTGAGGGTAAGAAAGTCACCAAGGTCAAA
1 TGAGGCAGTCTCCAAGGTCAAAGTC-GATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * * *
3423861 GCCAACAGGTAGACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCCGACAGGCAGACTGAGGGT-A
65 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAA
* *
3423925 GAAAAGTGTCCAGGGACAAA
130 G-AAAGTCTCCAGGGTCAAA
3423945 ACCAACAGGC
Statistics
Matches: 2941, Mismatches: 813, Indels: 398
0.71 0.20 0.10
Matches are distributed among these distances:
153 7 0.00
154 2 0.00
155 2 0.00
156 3 0.00
157 13 0.00
158 82 0.03
159 5 0.00
160 12 0.00
161 220 0.07
162 541 0.18
163 188 0.06
164 11 0.00
165 11 0.00
166 21 0.01
167 247 0.08
168 1367 0.46
169 178 0.06
170 21 0.01
171 2 0.00
172 2 0.00
173 5 0.00
174 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.20
Consensus pattern (169 bp):
TGAGGCAGTCTCCAAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAGGGTAAG
AAAGTCTCCAGGGTCAAAGTCGACTAGGCAAACTTGAGA
Found at i:3420453 original size:78 final size:77
Alignment explanation
Indices: 3420340--3420489 Score: 221
Period size: 78 Copynumber: 1.9 Consensus size: 77
3420330 GTCTAAGGTT
* * * * *
3420340 AAAGCCGATAGGTAGACTGAAGGTAAGAAATTCTCTAGGGTTAAAGCCGAC-AGGCAGACTTGAG
1 AAAGCCAATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGACTA-GCAAACTTGAG
3420404 GTGAGGCATGGTC
65 GTGAGGCATGGTC
*
3420417 AAAGCCAATAGGCAGACTTGAAGGTAAGAAAGTCTCTAGGGTCAAAGCTGACTAGCAAACTTGAG
1 AAAGCCAATAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGACTAGCAAACTTGAG
3420482 GTGAGGCA
65 GTGAGGCA
3420490 GTCTCCAAGG
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
77 15 0.23
78 49 0.75
79 1 0.02
ACGTcount: A:0.35, C:0.16, G:0.31, T:0.19
Consensus pattern (77 bp):
AAAGCCAATAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGACTAGCAAACTTGAGG
TGAGGCATGGTC
Found at i:3421130 original size:42 final size:42
Alignment explanation
Indices: 3420947--3421130 Score: 120
Period size: 42 Copynumber: 4.4 Consensus size: 42
3420937 GATAAGAAAG
* * * * * *
3420947 TCTCC-AGCGTCAAAGTCGACAAGCAGACTTTAGGTAAGGCAA
1 TCTCCAAG-GTCAAAGCCGATAAGCAGACTTGAGGTAAAGTAC
* * * * * * *
3420989 TCTTCAGGGTCAAAGCTGATAGGAAGACTTGAGGTTAGGCTA-
1 TCTCCAAGGTCAAAGCCGATAAGCAGACTTGAGGTAAAG-TAC
* * ** **
3421031 TCTCCAAGGTCAAAGCCGACAAGCATACTAAAGGTAAAAAAC
1 TCTCCAAGGTCAAAGCCGATAAGCAGACTTGAGGTAAAGTAC
* * * *
3421073 TCTCTAGGGTTAAAGCCGATAAGCAGACTTGAGGTGAAGTAC
1 TCTCCAAGGTCAAAGCCGATAAGCAGACTTGAGGTAAAGTAC
*
3421115 TCTCCAAGCTCAAAGC
1 TCTCCAAGGTCAAAGC
3421131 TAAAAGGCAA
Statistics
Matches: 102, Mismatches: 37, Indels: 6
0.70 0.26 0.04
Matches are distributed among these distances:
41 1 0.01
42 99 0.97
43 2 0.02
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (42 bp):
TCTCCAAGGTCAAAGCCGATAAGCAGACTTGAGGTAAAGTAC
Found at i:3421456 original size:42 final size:43
Alignment explanation
Indices: 3421410--3421892 Score: 223
Period size: 42 Copynumber: 11.6 Consensus size: 43
3421400 CAGGCGTAAG
*
3421410 GGTCAAAGCCGATAGGCAGA-TTGAGGGTAAGAAAATCTCCAA
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
* * ** * * * * *
3421452 GGTCAAAGTCAACTA-ATAGACTTGA-GATGAGACAGTCTCCAA
1 GGTCAAAGCCGA-TAGGCAGACTTGAGGGTAAGAAAATCTCTAA
* * * * *
3421494 GGTCAAAGTCGATAGGTAGA-GTAAAGGTAAGAAAATCTCTAA
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
*** * * ** *
3421536 GGTCAAAGTTAATTGGCAGACTTGA--G-ATG----T-GGTAG
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
* *
3421571 GGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGTCTCTAA
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
* * * * * * ** *
3421614 GGTCAAAACTGACAAGCAGACTTG-GAGTGAGGCAATCTCTAG
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
* * * ** *
3421656 GGTCAAAAACCAATAAGCAGACTT-AGGGTAAGAAGGTCTCCAA
1 GGTC-AAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
** * * * *
3421699 GGTCAAAGTTGATAGGTAGACCTGA-GGTGAAG-CAGTCTCTAA
1 GGTCAAAGCCGATAGGCAGACTTGAGGGT-AAGAAAATCTCTAA
* * * * *
3421741 GGTCAATGTCAAAAGGCAGACTT-AGGGTAAGAAAGTCTCTAA
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
* * * ** *
3421783 GGTCAAAGCTGATAGGCAGACTTGA-GATGAGGTAATCTCTAG
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
* * * *
3421825 GGTTAAAGCCGATAGGCAGAC-TAAAGGTAA-AAAAGTTTCTAA
1 GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAA-TCTCTAA
* *
3421867 GGTCAAAACCAATAGGCAGACTTGAG
1 GGTCAAAGCCGATAGGCAGACTTGAG
3421893 ATGAGGTAGT
Statistics
Matches: 318, Mismatches: 100, Indels: 45
0.69 0.22 0.10
Matches are distributed among these distances:
35 22 0.07
36 1 0.00
37 1 0.00
38 2 0.01
40 2 0.01
41 13 0.04
42 211 0.66
43 66 0.21
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.21
Consensus pattern (43 bp):
GGTCAAAGCCGATAGGCAGACTTGAGGGTAAGAAAATCTCTAA
Found at i:3421633 original size:78 final size:77
Alignment explanation
Indices: 3421494--3421637 Score: 180
Period size: 78 Copynumber: 1.9 Consensus size: 77
3421484 CAGTCTCCAA
* ** ***
3421494 GGTCAAAGTCGATAGGTAGAGTAAAGGTAAGAAAATCTCTAAGGTCAAAGTTAATTGGCAGACTT
1 GGTCAAAGCCGATAGGTAGAGTAAAGGTAAGAAAATCTCTAAGGTCAAAACTAACAAGCAGACTT
3421559 GAGATGTGGTAG
66 GAGATGTGGTAG
* * * * *
3421571 GGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGTCTCTAAGGTCAAAACTGACAAGCAGACT
1 GGTCAAAGCCGATAGGTAGA-GTAAAGGTAAGAAAATCTCTAAGGTCAAAACTAACAAGCAGACT
3421636 TG
65 TG
3421638 GAGTGAGGCA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
77 19 0.35
78 36 0.65
ACGTcount: A:0.36, C:0.12, G:0.29, T:0.22
Consensus pattern (77 bp):
GGTCAAAGCCGATAGGTAGAGTAAAGGTAAGAAAATCTCTAAGGTCAAAACTAACAAGCAGACTT
GAGATGTGGTAG
Found at i:3421686 original size:247 final size:245
Alignment explanation
Indices: 3421324--3421816 Score: 566
Period size: 247 Copynumber: 2.0 Consensus size: 245
3421314 GGCCGTTTTC
* * *
3421324 AGGGTCAAAGCCGACAAGTAGACTAAGGGTAAAAAAGTCTCAAGGGTCACATCCGATAAGCAGAC
1 AGGGTCAAAGCCGACAAGTAGACTAAGGGTAAAAAAGTCTCAAGGGTCAAAACCGACAAGCAGAC
* * * *
3421389 TTGAGGTGAGGCAGGCGTAAGGGTCAAAGCCGATAGGCAGATTGAGGGTAAGAAAATCTCCAAGG
66 TTGAGGTGAGGCAAGCGTAAGGGTCAAAACCAATAAGCAGATTGAGGGTAAGAAAATCTCCAAGG
* * * * *
3421454 TCAAAGTCAACTA-ATAGACTTGAGATG-AGACAGTCTCCAAGGTCAAAGTCGATAGGTAGAGTA
131 TCAAAGTCAA-TAGATAGACCTGAGATGAAG-CAGTCTCCAAGGTCAAAGTCAAAAGGCAGACTA
* * *
3421517 AAGGTAAGAAAATCTCTAAGGTCAAAGTTAATTGGCAGACTTGAGATGTGGT
194 AAGGTAAGAAAATCTCTAAGGTCAAAGCTAATAGGCAGACTTGAGATGAGGT
* * * * *
3421569 AGGGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGTCTCTAA-GGTCAAAACTGACAAGCAG
1 AGGGTCAAAGCCGACAAGTAGAC-TAAGGGTAAAAAAGTCTC-AAGGGTCAAAACCGACAAGCAG
* * **
3421633 ACTTG-GAGTGAGGCAATC-TCTAGGGTCAAAAACCAATAAGCAGACTT-AGGGTAAGAAGGTCT
64 ACTTGAG-GTGAGGCAAGCGT-AAGGGTC-AAAACCAATAAGCAGA-TTGAGGGTAAGAAAATCT
** * * * *
3421695 CCAAGGTCAAAGTTGATAGGTAGACCTGAGGTGAAGCAGTCTCTAAGGTCAATGTCAAAAGGCAG
125 CCAAGGTCAAAGTCAATAGATAGACCTGAGATGAAGCAGTCTCCAAGGTCAAAGTCAAAAGGCAG
* * * *
3421760 ACTTAGGGTAAGAAAGTCTCTAAGGTCAAAGCTGATAGGCAGACTTGAGATGAGGT
190 ACTAAAGGTAAGAAAATCTCTAAGGTCAAAGCTAATAGGCAGACTTGAGATGAGGT
3421816 A
1 A
3421817 ATCTCTAGGG
Statistics
Matches: 206, Mismatches: 34, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
245 23 0.11
246 53 0.26
247 126 0.61
248 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (245 bp):
AGGGTCAAAGCCGACAAGTAGACTAAGGGTAAAAAAGTCTCAAGGGTCAAAACCGACAAGCAGAC
TTGAGGTGAGGCAAGCGTAAGGGTCAAAACCAATAAGCAGATTGAGGGTAAGAAAATCTCCAAGG
TCAAAGTCAATAGATAGACCTGAGATGAAGCAGTCTCCAAGGTCAAAGTCAAAAGGCAGACTAAA
GGTAAGAAAATCTCTAAGGTCAAAGCTAATAGGCAGACTTGAGATGAGGT
Found at i:3422567 original size:42 final size:42
Alignment explanation
Indices: 3422471--3432679 Score: 1561
Period size: 42 Copynumber: 246.5 Consensus size: 42
3422461 TGAGGTGTGG
* * * * * *
3422471 TAGGGTCAAAGCTGACCGGTAGACTTGAAGGTAAGAAAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * *
3422514 TAGAGTAAAAGCCGACAGGCAGACTTGAGGTGAGGCAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3422556 TAGGGTCAAAGCTGACAAGTAGACTTAAGGT-AAGAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAA-GTCTC
* * * * *
3422598 CAAGGTCAAAGTCGACAGGTAGACTTGAGGTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * **
3422640 CATGGTCAATGTCGAGAGGCAGAC-TAAGGGTAAAAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * ** * * * *
3422682 CAAGG-CTAAAGCTAACAGGCAGACATGAGATAAGGTAGTCTC
1 TAGGGTC-AAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3422724 TATGGTCAAAGCCGACACGCAGA-GTAAGG-GTAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * * * *
3422766 CAGGGTCAAAACC-ATTAAGCAGACTTGAGATGA-GATAGTCCC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * * * * **
3422808 CAAGGACAAAGCTCG-TAGGTAGGCTTGAGGTTAGGCTGTCTC
1 TAGGGTCAAAGC-CGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3422850 TAGGGTCAAAGTCGACAGGCTGAC-TGAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * *
3422892 CAAGGTCAAATCCGACAGGCAGACTTGAGTTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3422934 TAGGGTCAAAACC-ATTAGGCAGACTTGAGATGAGGCAGTCTC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * * *
3422976 CATGGTCAATGTCGAGAGGCAGA-GTAAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * * *
3423018 CAAGGTTAAAGCCGACAAGTAGACATGAGATGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* *
3423060 TAAGGTCAAAGTCGACAGGCAGAC-TGAGG-GTAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * * * *
3423102 CAGGGTCAAAACC-ATTAGGCAGACTTGAGATGAGGTAGTCCC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * **
3423144 CAAGGTCAAAGCTC-ACAGGTAGGCTTGAGGTTAGGTTGTCTC
1 TAGGGTCAAAGC-CGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3423186 TAGGGTCAAAGCTGACAGGCTGAC-AGAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * * * *
3423228 CAAGGTCATATCCGACAGGCAGACTTAAGTTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
** *
3423270 TAGGGTCAAAATCGATAGGCAGAC-TGAGG-GTAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * *
3423312 TAGGGTCAAAGCCGACAAGTAGA-TTGAGGTTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGAGGAAGTCTC
* * * * * *
3423354 TAAGGTCAAAGTCGACTA-GCAAACTTAAGATGAGGTAGTCTC
1 TAGGGTCAAAGCCGAC-AGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3423396 CAGGGTCAAAGTCGATATGAAGAC-TGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * *
3423438 AAGGGTCAAA-CCGATAGGCAGACTTGAGGTGAGGCAGCCTA
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * *
3423479 AAGGGCCAATGCCGACAGACAAAC-TGAGGGTAAGAAAATCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
** * * *
3423521 TAGGGTCAAAGTTGACAAGTAGAC---AGGCGATGTGAGAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGA-G-GA-AGTCTC
* * ** * ** * *
3423563 TAAGGTGAAAATCGACAGGTAGACTAAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * *
3423605 TAAGGTCAAAGCTGACAAGCAGACTTGAGGTGA-G-A-----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3423640 TAGGGTCAAAGCGGATAGGTAGACTTGAGGGTAAGAAAG-CATC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTC-TC
* * *
3423683 CAGGGTCAAAGCCGACAAGCAGACTTGAGGTAAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * *
3423725 TAGGATCAAAGCCAACAGGCAGACTT-AGGGTAAGAAAGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
*** *
3423766 TCAGGGTCAAAGTTAATC-GGCAGACTT-ATGGTGAGGCAGTCTC
1 T-AGGGTCAAAGCCGA-CAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * * * * *
3423809 CAAGGTCAATGCTGAAAGACAAAC-TGAGGGTAAGAAAGTCAC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * *
3423851 CAAGGTCAAAGCCAACAGGTAGACTTGAGATGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* *
3423893 TAGGGTCAAAGCCGACAGGCAGAC-TGAGG-GTAGAAAAGTGTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AG-GAAGTCTC
* * * * * * * *
3423935 CAGGGACAAAACCAACAGGCAGACATGAGATGTGGTAGTC-C
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * *
3423976 TTAGGGTCAAAGCTGACAGGCAGACTTGAGGTTAGGCTA-TCTC
1 -TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* ** * * * * **
3424019 TAGGGTCATAGTTGATAAGCAGA-TTGAAGGTAAGAAAGTCAA
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * *
3424061 TAGGGTC--A----A-A-GC---CTTGAAGGTAAGAAAGTCAC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * *
3424093 TAGGGTCAAAGTCGACAGCCAGACTTGAGGTGAGGTACTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * * *
3424135 CAAGGTCAATGCCGAAAGGTAGACTTGTGTTTAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * ** * * *
3424177 CAAGATCAAAGTTGACAGGCAAAC-TGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * *
3424219 AAGAGTCAAAGTCGACCGGCAGACATGAGGTGAGGCAGCCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3424260 TGAGAGTCAAAGTCGACAAGTAGAC-TGAGGGTAAGAAAATCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
** * * * *
3424303 CGGGGTCAAAGCCAATAGGTAGACTTGAGATGA-GACAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * * ** *
3424345 CAAGGTCAACA-TCGATAGGTAGACTAAAGG-GAAGAAAGTCTC
1 TAGGGTCAA-AGCCGACAGGCAGACTTGAGGTG-AGGAAGTCTC
*** *
3424387 TAGGGTCAAAAATGATAGGCAGACTTGAGGTGA-G--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * *
3424422 TAGGGTCAAAGCCGATAGGTAGACTTGCGGGTAAGAAAATCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * *
3424465 CAGGGTC--A-TCGACAAGCAGACTTGAGGTGA-GACAATCTA
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * *
3424504 TAGGGTCAAAGCCAACAGGCAGACAT-AGG-GCAAGAAGGACTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGGAA-GTCTC
* ** * * * * *
3424546 TAGGGCCAAAGTTGATAGGCAAACTTCAGGTGGGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * **
3424588 CAAGGTCAATGCCGAGA-G--GAC-TGAGGGTAAAAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
*** * * * * * * * * *
3424627 CCTGATTAAATCTGACAAGTAGACTTGAGATGAGGTAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3424669 TAAGGTAAAAGCCGACAAGCAAAC-TGATGGT-AGGAAAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGG-AAGTCTC
* * * * * * * *
3424711 CAAGCTCAAAACCAATAGGCAGACTTGAGATGAGGCAGT-TCC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCT-C
** * * **
3424753 TAGGGTCAAAGTTGACAGGCAGACTTAAGGTTAGG-TTTGCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGT-CTC
* * * * *
3424795 GAGGGTCAAAGTCGACAAGCAGA-TTGAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * ** * *
3424837 TAAGG--AAA----A-A---A-CCTTGAAGGT-AAAAATGTGTT
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAA-GTCTC
* * * * * * * *
3424869 TAGGGTCAAAGCCAAAAAGCAGACTAGTGTTGAGGCAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * *
3424911 TAGGGTCAAAGTCGACAAGCAGAC-T-AAGTGAAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * * *
3424953 TAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCATTCAC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
** * * **
3424995 TATTGTCAAAGCCGACAAGCAGA-TTGAGGATAAAAAAGTCTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGAGGAAGTC-TC
* * * ** *
3425038 TA-GGTTAAAG-CTAGTAGGCAGACTAAAGGTGA-GACAATCTC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * *
3425079 TAAGGTCAAAGCCGAAAGGTC-GAC-TAAGG-GTATGAAAGTCTC
1 TAGGGTCAAAGCCGACAGG-CAGACTTGAGGTG-A-GGAAGTCTC
* **** * * *
3425121 TAAGGTCAAATATAACATGCAAACTTGAGATGAGGAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * ** * * *
3425163 AATGGTCAAAGCTAACAGGTAAAC-TGA-GTGTATGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-A-GGAAGTCTC
* * * ** * * * *
3425205 CAAGGTCAAAGCTGACAGGCAGACTAAAAGTAAGAAAGTCCC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* *
3425247 TAGGGCCAAAGCTGACAGGCAGACTTGAGGTGA-G--G---C
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3425283 TA-GGTCAAAGCCAACAAGCATACTTGAGATGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* ** *
3425324 TAGGGCCAAAGTTGACAGGCAGAC-TAAGG-GTAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * * * * *
3425366 CAAGGTCAAAGCTGACAAGTAGACTTGAGATGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * *
3425408 TAAGGTCAAAGCTGACAGGAAGACTT-AGGGTAAGAAAGCCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * *
3425450 CAAGGTCAAAGTCAACAGGCAGAATTGAGGTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * *
3425492 AAAAGGTCAAAGTCGATAGGCAGAC-TGAAGGTAAGAAAGTCTC
1 -TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * * *
3425535 CAAGGTTAAAGTCGATAGGCAGACATGAGGTGA-G--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3425570 TAGGGTCAAAGCTGATAAGCAAACTTGAAGTTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * *
3425613 TAGGGTCAAAGTCGACAAGCAGACTTGAGGTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * ** * * * *
3425655 CAAGGTCAAAGTTGATAAGG-AGAC-TGAGGGTAAGAAAGGCTC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * *
3425697 CAAGGTGAATGCCAACAGGCAGACTTAAGGTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3425739 TAGGGTTAAAGCCAACTGGCAAAC-TGAGGGTAAGAAAGTCCC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * * *
3425781 CAAGGTTAAAGTCGACTGGGAGACTTGAGATGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3425823 TAGGGTCAAAGCCGACTGGGAGACTTGAGATGAGGTAGTCCC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * **
3425865 AAGGGTCAAAGCCGACAAGAAAAC-TAAGGGTAAAAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* ** * * *
3425907 AAGGGTCATGGCCGATAGGCAGACTTGAGGTGAGGCAGCCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * **
3425948 TGAGGGTCAAAGTCGACAGACAGAC-TAAGGGTAAAAAAATGT-TC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGA-GGT-GAGGAA-GTCTC
* * * * * * * *
3425992 -AGGGTTAAAGCTGACAAGTATACTTAAGATCA-GACAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * ** ** * *
3426033 AAAGGTCAAAGTCGATAGGTTGACTAAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
** * * * *
3426075 TAATGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGT-TT
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * * * *
3426116 TCAAGGTCAAAACCAACAAGCAGACTTGAGATGAGGCAGTCCC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * ** ** * *
3426159 CAAGGTTGAAGTTGACAGGCAGACTTGAGGTTAGGCTA-TCTAC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCT-C
* * * * * ** * * *
3426202 -ACGGTCGAAGCCGATAGGTAGAGTAAAGGTAAGAAAGTCTG
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* *
3426243 TAGGGTCAAAGTCGATAGGCAGACTTGAGGTGAGGTAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * * ** * *
3426285 TAGGGTGAAAGCCAAAAGGTAGACTTCTGTTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * ** *
3426327 TAGGGT-AAATGTCGACAGGCAAAC-TGAAGGTAAAAAAATCTC
1 TAGGGTCAAA-GCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* **** * * **
3426369 TAAGGTCAAAGATTTCAAGCAGACTTGAGATGAGGTTGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * ** * * *
3426411 AATGGTCAAAGTTGACATGTAGAC-TGAGAGT-AGAAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAG-GTGAG-GAAGTCTC
* * * *
3426453 TAGGGTCAAAGTCGATAGACAGACTTGAGATGA-GACAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * * ** *
3426495 CAAGGTCAAAGTCGACAGGCAGAC-TGAAAGTAAAAAAGTCTA
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * **
3426537 TAGGGTTAAGGCCGACAGGCAGAC-TGAAAGTAAAAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * *
3426579 TAGGATCAAAGCCGACAGGTAGATTTGA-G-G-GG-AG--GC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
** * * * * *
3426615 -AGGGTCAAAGCTAATAGGCATACTTAAGATGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3426656 TAGTGTCAAAGTCGACAAGCAG-CCTGAGG-GTAGGAAAGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * * * *
3426697 TCAAGGTCAAAGTTC-ACAAGCAGACTTGAGATAAGGCAGTCTC
1 T-AGGGTCAAAG-CCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * ** * * *
3426740 CAAGGTCAAAGCCGACAAACAGAC-TGAGGGTAAGAAAGCCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * ** * * * *
3426782 CAAGATCAATGTTGATAGGCAGACTTAAGGTAAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3426824 TAAGGTTAAAGCCGATAGGTAGAC-TGAAGGTGAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * *
3426866 TAGGGTTAAAGCCGATAGGCAAACTTGAGGTGA-G--G---C
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * *
3426902 -AGGGTTAACG-TGCAGAGGCAGACTTGAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCG-ACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * * *
3426944 TAGGATCAAAGCTGACAAGCAAACTTGAGGTGAAGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * ** * **
3426986 CAAGGACAAAGCCGACAGATAGAC-TAAGGGTGAAAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * *
3427028 CAAGTTCAAAGCCAACAGGCTGACTTAACGTGA-GATAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * *
3427070 TAGGGTTAAAGTCGACAGGCAGA-TTGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * * * * *
3427112 CAAGGTCAAAGTCGACTGGCAGATTTAAGATAAGGTAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* ** * * * ** * *
3427154 CAAAGACGAAGCTGACAAATACAGAC-TGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGAC--AGGCAGACTTGA-GGTGAGGAAGTCTC
* ** * *
3427198 AAGGGTCAAAGTTGACAAGCAGACTTGAGGTGAGGTAG-C-C
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * ** * * * *
3427238 ATGAAGGTCAAAGTCGACAGATAGAC-TAAGGGTAAGAAAATCTC
1 -T-AGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * **
3427282 -CGAGGTCAAAGCTGACCA-GTAGACTTGAAATGA-GACAGTCTC
1 TAG-GGTCAAAGCCGA-CAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * * * * * ** *
3427324 CAAGGCCAAAGTCAACAGGTAGA-ATGAACGAAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
*
3427366 TAGGGTCAAAGCCGATAGGCAGACTTGAGGTGA-G--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * * *
3427401 TAGGGTTAAAACTGACAAGTAGAATTAAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* *
3427444 TAGGGTCAAAGTCGACAAGCAGACGTT-AGGTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TTGAGGTGAGG-AAGTCTC
* * *** * *
3427486 CAGGGTCAAAGCTGACATAAAGACTTGAGGTTAGGCTATGTC-C
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG--AAGTCTC
* * ** * * *
3427529 -AAGGTCAAAGCCGACAAGCAGACTAAAGGTAAGAAACTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * *
3427570 TAGGGTCAAAGCCGATAGGCAAACTTAAGGTGAAGTACTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3427612 CAAGCTCAAAGTCGTA-AGGCAAACTTGTGTTGAGGCAA-TCTC
1 TAGGGTCAAAGCCG-ACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * * * *
3427654 -AGGGTCAAAGTCGAGAAGCAGAC-TAAGG-GTAGAAAAATCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AG-GAAGTCTC
* * *
3427695 T-GGGTTTAAAGCCGACAGGTAGACTTGAGATGAGGCAA-TCTC
1 TAGGG-TCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * * * * *
3427737 TAGGGCCAAAGCTGATAAGCAGA-TTAAGTGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAG-GTGAGGAAGTCTC
* * * * * *
3427779 CAGGATCAAAGCCAACTGGCAAAC-T----TGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * *
3427816 CAGGGTCGAAGCAGATAAGTAGAC-TGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * *
3427858 AACGGTCACAA-TCGACAGGTAGACTTGAGGTGAGGTAGCCT-
1 TAGGGTCA-AAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * *
3427899 TGAGGGTCAAAGCCAATAGGGAGA-TTGAGAGTAAGAAAATCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAG-GTGAGGAAGTCTC
* * * * *
3427942 CATGGTCAAAGTCGACAGGTAGACTTGAGATGA-GACAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * * ** *
3427984 CAAGGTCAAAGTCGATAGGTAGACTAAAGGTGAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
** * * * *
3428026 TAGGGTCAAAGCTAATAGGCAAACTTAAGGTG-TG--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * *
3428061 TAGGGTCAAAGCCGATAGGTAGACTTAAGGGTAAGAAAATCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* ** * * * *
3428104 TAGGGTCAAAACTAAGAAGCAGA-TTGAAGTGAGGCAA-CCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* *
3428145 TAGGGTCAAAGCCAACAGGCAGACTT-AGG-GTAAGAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGGAA-GTCTC
** * * * * *
3428187 TAGGGTCAAAGTTGATAAGTAAACTTGAGGTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * *
3428229 CAAGGTCAATGTCGAAAGGCAGAC-TAAGGCTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGAGGAAGTCTC
* *
3428271 TAGGGTCAAAGCTGACAGGCAGACTTGAGATGAGGTAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * * *
3428313 TAGGGTCAAAGCTGACAGGCAAAC-TAATGGT-AGAAAAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAG-GAAGTCTC
* * * ** * *
3428355 TAAGGTCAAAACCAATGGGTC-GACTTGAGATGAGGTAGTC-C
1 TAGGGTCAAAGCCGACAGG-CAGACTTGAGGTGAGGAAGTCTC
* * * * * * ** *
3428396 TCACGGCCAAAGCTGACAAGCAGACTTGAGGTTAAGCTGTCCC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3428439 CACGGTCAAAGTCGACAGGCAGA-TTGAATGTAAGAAAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* *
3428481 TAGGGTC-AA----A-A--C---CTTGAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * * *
3428513 TAGGGTCAAATCCGACAAGTAAACTTGAGGTAAGGAATTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3428555 CAAGGTCAAAGTCGATAGGCAGAC-TGAGG-GTAGGAAAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* ** * *
3428597 CAGGGTCAAAGCCGACAGTTAGACTTGAGTTGAGGCAGT-TGC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCT-C
* * * * * * * *
3428639 TATGGTCAACGCTGACAAGCGGACTAG-GGATAAGAAAGTCTCC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGAGGAAGTCT-C
* * *
3428682 TA-GGTTAAAGCCGACAAGCAGACTAGAGGTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * * * * * *
3428723 CAAGGACCAAGCTGAAAGACAGAC-TGAGG-GTATGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-A-GGAAGTCTC
* ** * *
3428765 TAAGGTCAAAGCTAACAGGCAGACTTGAGATGGGGGAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGT-GAGGAAGTCTC
* * * * * * *
3428807 -CGTGGTCAAAGCTGACAAGCAGAC-TAAGAGTAAGAAAATCT-
1 TAG-GGTCAAAGCCGACAGGCAGACTTGAG-GTGAGGAAGTCTC
* * * * * * *
3428848 TCA-AGTCAAAGTCAACTGGTAGACTTGAGAT-AAGATAGTCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * ** * *
3428890 TAAGGTCAAAACCGATAGGCAAACTAAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3428932 TAAGGTCAAAACCGACAAGCAGACTTAAGGTG-TG--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3428967 TAGGGTCAAAGCTGACCGG-TGACTTGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * *
3429009 TAGAGTAAAAGGCGACAGGCAGACTTGAGGTTAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* ** **
3429051 TAGGGTTAAAGTTGACAGGCAGACTT-AGAGT-AAAAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAG-GTGAGGAA-GTCTC
* * * *
3429093 CAAGGTCAAAGTCGACAGGCAGACGTGAGGTGA-GACAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * * * * * *
3429135 CATGGTTAATGTCGAGAGGCAGAC-TGAGGATAAGAAAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGAGGAAGTCTC
* * * * * *
3429177 CAAGGTTAAAGCCGATAGGCAGACTTGAGATGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3429219 TAAGGTGAAAGTCGACAGGTAGAC-TGAGGAT-AGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGAGG-AAGTCTC
* * * * * * *
3429261 TAGTGTCAAAACC-ATTAGGCAGACATGAGATGAGGCAGTCCC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * **
3429303 CAAGGTCAAAGCTC-ATAGGTAGGCTTGAGGTTAAGCTGTCTC
1 TAGGGTCAAAGC-CGACAGGCAGACTTGAGGTGAGGAAGTCTC
* ** * * *
3429345 TAGGGTCAAAGTCGACAGGCTCACTTAAGGTAAGAAAGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3429386 TCAAGGTTAAATCCGATAGGTAGACTTGAGTTGAGGTAGTCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
** * * *
3429429 TAGGGTCAAAATCGACAGGCAGACTAG-GAGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAG-GTGAGGAAGTCTC
* * * * * * *
3429471 TATGGTCAAAGTCGATAGGCAGA-TTGAGGGTAAGAAATTATC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
** * ** * * * **
3429513 TAAAGTTAAAGTTGACTGGTAGACTTGAGATGAGGCTGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * * *
3429555 CAGGATCAAAGTCGATATGAAAAC-TGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * *
3429597 AAGGGTTAAA-CTGATAGCCAGACTTGAGGTGA-GATAGCCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * ** * *
3429637 TAAGGGTCAAAGCCAACAAGTAGACAGGCGATGA-GACAGTCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * ** ** * *
3429680 TAAGGTGAAAGTCGACAGGTAGACTAAAGGT-AAAAAGTTTT
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3429721 TAAGGTTAAAGCTGACAAGCAGACTTGAGGTGA-G-A-----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3429756 TAGGGTCAAAGCAGATAGGTACACTTAAGGGTAAGAAAG-CATC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTC-TC
* * * *
3429799 CAGGGTCAAAGCCAACAAGCAGATTTGAGGTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * * **
3429841 TAGGGTCAAAGCCAACCGGCAGACTTAAGGTAAAAAAGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3429882 TCAGGGTCAAAGTCAATCA-GCAAACTT-ATGGTGAGGTAGTCTC
1 T-AGGGTCAAAGCCGA-CAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * *
3429925 CAAGGTCAATGCTGAAAGGCAGAC-TGAGG-GTAAGAATGTCAC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGGAA-GTCTC
* * * * * * *
3429967 CAAGGTCAAATCCGACAAGCAGACTTAAGATGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3430009 TAGGGTCAAAGTCGACAGGCAGAC-TGAGGGTAAGAAAATCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * * * *
3430051 AAGGGTCAAAACCAACAAGCAGACTTGAGATGAAGCAGTC-C
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* ** * * * *
3430092 TCAAGGTCAAAGCTAACAGGAAGACTTGAGGTTAGGCTAG-CTT
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
*** * * * * **
3430135 TAGGGTCAAAGTTAATAAGCAGA-TTGAAGGTAAGAAAGTCAA
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * ** * * ** ** *
3430177 TAGGATTAAAGCCTTGAAAGTAAGA---AAAGCCACTAAG-GTC
1 TAGGGTCAAAGCC--GACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * ** * **** *
3430217 AAAGTTGACAGCCAGACTTG-AG--GTGAGGAACTCTCCAAG-GTC
1 TAGGGTCAAAGCC-GACAGGCAGACTTGAGG---TGAGGAAGTCTC
* * * * * ** * * ****
3430259 AAAGTTGAAAGGCAGACTTGC-G-TTTAGATAGTCTCCAAG-CTC
1 TAGGGTCAAA-GCCGACAGGCAGACTT-GA-GGTGAGGAAGTCTC
** * * **
3430301 -AAAGTCAACAGGCAGAC--TCAG-GGT-A-G-GA--AAGTCTC
1 TAGGGTCAA-A-GCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3430336 AAGGGTCGAAGTCGACTA-GCAGACTTGAGGTGAGGTAGCCT-
1 TAGGGTCAAAGCCGAC-AGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3430377 TGAGAGTCAAAGTCGACAAGCAGAC-TGAGGGTAAGAAAATTTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * * *
3430420 CAAGGT-AATAGCCGACAAGTAGACTTGAGATGA-GACAGTCTC
1 TAGGGTCAA-AGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * ** * *
3430462 CAAGGTCAACA-TCGACAGGTAGACTAAAGGTAAGAAAGTCTC
1 TAGGGTCAA-AGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3430504 AAGGATCAAAGCCGATAGGTAGACTTGAGGTGA-G--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3430539 TAAGGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* *
3430582 CAGGGTCAAAGCCGACAAGCAGACTTGAGGTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* *
3430624 TATGGGTCAAAGCCAACAGGCAGACTT-AGG-GCAAGAAAGTCTC
1 TA-GGGTCAAAGCCGACAGGCAGACTTGAGGTG--AGGAAGTCTC
* * ** * * * *
3430667 TAAGGCCAAAGTTGATAGGCAGACTTGAGGTGGGGTAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * *
3430709 TAAGGTCAATGCTGAGAGGTAGAC-TAAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
*** * * **
3430751 CCTGGTTAAAGCCGACAGGTAGACTTGAGGTGAGTTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3430793 TAAGGTCAAAGTCGACAAGAAAAC-TGATGGT-AGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGG-AAGTCTC
* * * * * *
3430835 CAGGGTCAAA-ACGAACAGGCAGACTTGAGATAAGGTAGTCCC
1 TAGGGTCAAAGCCG-ACAGGCAGACTTGAGGTGAGGAAGTCTC
* * ** * **
3430877 CAAGGTCAAAGTTGACAGGCAGACTTGAGGTTAGGCTGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * *
3430918 TCAGGGTCAAAGTCGACAGGCAGA-TTGAAGGTAAGAAAGTCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * **
3430961 TA-GG-----GCC-A-A---AGCCTTGAAGGTAAGAAAGTGGC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * * * * * *
3430993 CAAGGTCAAAGCCGAAAGGCAGACTAGTGTTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* *
3431035 TAGGGTCAAA-CTCGATAGGTAGAC-TGAGG-GAAGGAAAGTCTC
1 TAGGGTCAAAGC-CGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * * * *
3431077 CAAGGTCAAAGCCGACTA-GTAGACTTGAGATAAGGTAGTCGT-
1 TAGGGTCAAAGCCGAC-AGGCAGACTTGAGGTGAGGAAGTC-TC
** * * * * * *
3431119 TATTGTCCAAGCCGACAAGCAGAC-TGAGGATAAGAAACTTTCC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGAGGAAGTCT-C
** **
3431162 TA-GGTCAAAGCTAACAGGCAGACTAAAGGTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * *
3431203 CAGGGTCAAAGCCAAAAGGCAGAC-TGAGGAT-ATGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGG-TGA-GGAAGTCTC
* * *** * * * *
3431245 TAAGGTTAAAGATAACATGCAGGCTTCAGATGAGGAAGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3431286 TAATGGTCGAAA-CCGACAGGCAGA-TTGAGAGTAAGAAAATCTC
1 T-AGGGTC-AAAGCCGACAGGCAGACTTGAG-GTGAGGAAGTCTC
* * * * * * * **
3431329 CAAGGTCAAAACCAATAGGTAAACTTGAGACGA-GATAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* * * * ** * ** **
3431371 CAAGGTCAAAACCGATAGGCAGACTAAAAGCAAGCCAG-CGTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTC-TC
* * *
3431413 TAGGGTCAAAGCTGACAAGCAGACTTGAGGTG-TG--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3431448 TAGGGTCAAAGTCGACAGGTAGACTTGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* *
3431491 TAGGGTCAAAGTCGACAGGCAGACTT-AGGGTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * *
3431533 TAGGGTGAAAGCTGACAGGCAAACTT-AGG-GTAAGAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGGAA-GTCTC
* * * ** * * * *
3431575 CAAGGTAAAAATCGACATGCAGACTTGAGGAGATGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * *
3431617 CATGGTCAATA-CCGAGAGGTAGAC-TGAGTGTAAGAAAGTTTC
1 TAGGGTCAA-AGCCGACAGGCAGACTTGAG-GTGAGGAAGTCTC
* * * * *
3431659 CAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGTAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * *
3431701 TAGTGTTAAAGTCGACAGGCAGAC-TGAGG-GTAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGG-AAGTCTC
* * * * ** *
3431743 TAGGGTCAAA-ACTATTAGGCAAACTTGAGACGAGGTAA-TCCC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGAGGTGAGG-AAGTCTC
* ** * * * ** *
3431785 TAGGATCAAAGCTAATAGGTA-AGCTTGAGGTTAGGCTGACTC
1 TAGGGTCAAAGCCGACAGGCAGA-CTTGAGGTGAGGAAGTCTC
* * ** * * * *
3431827 TAAGGACAAAGTTGATAGGCAAAC-TGAAGGT-AAGATAGTGTC
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGA-AGTCTC
* * * *
3431869 TAAGGTCAAAGCTGACAAGCAGACTTGAGGTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* ** * * * *
3431911 TAGGGTGAAAATCGACAAGCAAAC-TGAAGGT-AGGAAAGTTTG
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGG-AAGTCTC
* * *
3431953 TAGGGTCAAAGCCGACAGGTAGACTTGAGATGAGGCTA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * * *
3431995 T-GAGGTC-AAGCCGACTGGCAGACTTCAGGTGCGGCAGCCTC
1 TAG-GGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * * *
3432036 CAGGGTAAAAACCGATAAGCAGAC-TAAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTCTC
* * * *
3432078 -AAGGTCAAA-CCAACAGGCAGACTTGAGGTGAGGCAGCCT-
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
** * * * *
3432117 TGAGGGTCAAAGCTAAGAGGCAGAC-TGAAGGTAAGAAAATCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGAAGTCTC
* * ** *
3432160 TAGGGTCAAAGCCGATAGGTAGACTTGAAAT-AAGATAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGA-AGTCTC
* ** ** *
3432202 TAAGGTCAAAGTTGACAGATAGAC-TGAAGGT-AGGAAAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGG-AAGTCTC
* * *
3432244 TAGGGTCAAAGCCGACAAGTAGACTTAAGGTGA-G--G----
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * *
3432279 TAGGGTCAAAGCTGACAGGTAGACTTGAGGGTAAGAAAG-CATC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGGAAGTC-TC
* * * *
3432322 CAGGGTCAAAGCCGACAAGTAGACTTGAGGTAAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGG-AAGTCTC
* * * *
3432364 CAAGGTCAAAGCCAACAGGCAGACTT-AGG-GTAAGAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTG-AGGAA-GTCTC
* ** * * * *
3432406 TAAGGTCAAAGTTGAAAAGCAGACTTAAGGTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * * * ** *
3432448 CAAGGTCAATGCC-AGGAGGCAAAC-TGAGGATAAAAAAATCTC
1 TAGGGTCAAAGCCGA-CAGGCAGACTTGAGG-TGAGGAAGTCTC
*** * *
3432490 CCTGGTCAAAGCCGACAGGCAGACTTGAGATGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * *
3432532 TAGGGTCAAAGCCGATAGGCAGA-TTGACAGT-AGGAAAATCTGC
1 TAGGGTCAAAGCCGACAGGCAGACTTGA-GGTGAGG-AAGTCT-C
* * * * * * *
3432575 -AAGGTCAAAACCAATAGGCAGACTTGAGATGAGGTAG-CCC
1 TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3432615 TAAGGG-CAATGCTGACAGGCAGACTTAAGGTTAGGATGTCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
* * * * *
3432657 CAAGGTCAACGTCGATAGGCAGA
1 TAGGGTCAAAGCCGACAGGCAGA
3432680 TTAAAGGTAA
Statistics
Matches: 7205, Mismatches: 2319, Indels: 1285
0.67 0.21 0.12
Matches are distributed among these distances:
31 6 0.00
32 83 0.01
33 4 0.00
34 22 0.00
35 290 0.04
36 58 0.01
37 30 0.00
38 19 0.00
39 66 0.01
40 95 0.01
41 632 0.09
42 5131 0.71
43 704 0.10
44 59 0.01
45 6 0.00
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.20
Consensus pattern (42 bp):
TAGGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGAAGTCTC
Found at i:3424083 original size:32 final size:32
Alignment explanation
Indices: 3424042--3424103 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
3424032 GATAAGCAGA
3424042 TTGAAGGTAAGAAAGTCAATAGGGTCAAAGCC
1 TTGAAGGTAAGAAAGTCAATAGGGTCAAAGCC
*
3424074 TTGAAGGTAAGAAAGTCACTAGGGTCAAAG
1 TTGAAGGTAAGAAAGTCAATAGGGTCAAAG
3424104 TCGACAGCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.40, C:0.11, G:0.29, T:0.19
Consensus pattern (32 bp):
TTGAAGGTAAGAAAGTCAATAGGGTCAAAGCC
Found at i:3425420 original size:161 final size:161
Alignment explanation
Indices: 3425134--3425433 Score: 361
Period size: 161 Copynumber: 1.9 Consensus size: 161
3425124 GGTCAAATAT
* * * * * * *
3425134 AACATGCAAACTTGAGATGAGGAAGTCTCAATGGTCAAAGCTAACAGGTAAACTGAGTGTATGAA
1 AACAAGCAAACTTGAGATGAGGAAGTCTCAAGGGCCAAAGCTAACAGGCAAACTAAGGGTAGGAA
* *
3425199 AGTCTCCAAGGTCAAAGCTGACAGGCAGACTAAAAGTAAGAAAGTCCCTAGGGCCAAAGCTGACA
66 AGTCTCCAAGGTCAAAGCTGACAAGCAGACTAAAAGTAAGAAAGTCCCTAAGGCCAAAGCTGACA
*
3425264 GGCAGACTTGAGGTGAGGCTAGGTCAAAGCC
131 GGAAGACTTGAGGTGAGGCTAGGTCAAAGCC
* * * * *
3425295 AACAAGCATACTTGAGATGAGGCAA-TCTCTAGGGCCAAAGTTGACAGGCAGACTAAGGGTAGGA
1 AACAAGCAAACTTGAGATGAGG-AAGTCTCAAGGGCCAAAGCTAACAGGCAAACTAAGGGTAGGA
* ** * ** * *
3425359 AAGTCTCCAAGGTCAAAGCTGACAAGTAGACT-TGAGATGAGGCAGTCTCTAAGGTCAAAGCTGA
65 AAGTCTCCAAGGTCAAAGCTGACAAGCAGACTAAAAG-TAAGAAAGTCCCTAAGGCCAAAGCTGA
3425423 CAGGAAGACTT
129 CAGGAAGACTT
3425434 AGGGTAAGAA
Statistics
Matches: 114, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
160 2 0.02
161 110 0.96
162 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (161 bp):
AACAAGCAAACTTGAGATGAGGAAGTCTCAAGGGCCAAAGCTAACAGGCAAACTAAGGGTAGGAA
AGTCTCCAAGGTCAAAGCTGACAAGCAGACTAAAAGTAAGAAAGTCCCTAAGGCCAAAGCTGACA
GGAAGACTTGAGGTGAGGCTAGGTCAAAGCC
Found at i:3425513 original size:43 final size:41
Alignment explanation
Indices: 3425451--3425569 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 41
3425441 GAAAGCCTCC
* * *
3425451 AAGGTCAAAGTCAACAGGCAGAATTGAGGTGAGGCAGTCTCAA
1 AAGGTCAAAGTCGATAGGCAGAA-TGAGGTGAGGAAGTCTC-A
* * * *
3425494 AAGGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCC
1 AAGGTCAAAGTCGATAGGCAGAATG-AGGTGAGGAAGTCTCA
*
3425536 AAGGTTAAAGTCGATAGGCAGACATGAGGTGAGG
1 AAGGTCAAAGTCGATAGGCAGA-ATGAGGTGAGG
3425570 TAGGGTCAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.37, C:0.14, G:0.32, T:0.17
Consensus pattern (41 bp):
AAGGTCAAAGTCGATAGGCAGAATGAGGTGAGGAAGTCTCA
Found at i:3425611 original size:78 final size:77
Alignment explanation
Indices: 3425496--3425650 Score: 204
Period size: 78 Copynumber: 2.0 Consensus size: 77
3425486 AGTCTCAAAA
* * * * *
3425496 GGTCAAAGTCGATAGGCAGACTGAAGGTAAGAAAGTCTCCAAGGTTAAAGTCGATAGGCAGACAT
1 GGTCAAAGTCGATAAGCAAACTGAAGGTAAGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGACAT
3425561 GAGGTGAGGTAG
66 GAGGTGAGGTAG
* * *
3425573 GGTCAAAG-CTGATAAGCAAACTTGAAGTTAAGAAAGTCTCTAGGGTCAAAGTCGACAAGCAGAC
1 GGTCAAAGTC-GATAAGCAAAC-TGAAGGTAAGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGAC
*
3425637 TTGAGGTGAGGTAG
64 ATGAGGTGAGGTAG
3425651 TCTCCAAGGT
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
76 1 0.01
77 17 0.25
78 49 0.73
ACGTcount: A:0.35, C:0.14, G:0.32, T:0.19
Consensus pattern (77 bp):
GGTCAAAGTCGATAAGCAAACTGAAGGTAAGAAAGTCTCCAAGGTCAAAGTCGACAAGCAGACAT
GAGGTGAGGTAG
Found at i:3428504 original size:32 final size:32
Alignment explanation
Indices: 3428462--3428522 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
3428452 GACAGGCAGA
* *
3428462 TTGAATGTAAGAAAGTCTTTAGGGTCAAAACC
1 TTGAAGGTAAGAAAGTCTCTAGGGTCAAAACC
3428494 TTGAAGGTAAGAAAGTCTCTAGGGTCAAA
1 TTGAAGGTAAGAAAGTCTCTAGGGTCAAA
3428523 TCCGACAAGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (32 bp):
TTGAAGGTAAGAAAGTCTCTAGGGTCAAAACC
Found at i:3430677 original size:85 final size:86
Alignment explanation
Indices: 3430542--3430698 Score: 208
Period size: 85 Copynumber: 1.8 Consensus size: 86
3430532 GGTGAGGTAA
* * * * * *
3430542 GGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCCGACAAGCAGACT
1 GGTCAAAGCCAACAGGCAGACTTGAGGGCAAGAAAGTCTCCAAGGCCAAAGCCGACAAGCAGACT
3430607 TGAGGTGAGGCAATCTCTATG
66 TGAGGTGAGGCAATCTCTATG
* ** * *
3430628 GGTCAAAGCCAACAGGCAGACTT-AGGGCAAGAAAGTCTCTAAGGCCAAAGTTGATAGGCAGACT
1 GGTCAAAGCCAACAGGCAGACTTGAGGGCAAGAAAGTCTCCAAGGCCAAAGCCGACAAGCAGACT
3430692 TGAGGTG
66 TGAGGTG
3430699 GGGTAGTCTT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
85 40 0.67
86 20 0.33
ACGTcount: A:0.32, C:0.18, G:0.31, T:0.18
Consensus pattern (86 bp):
GGTCAAAGCCAACAGGCAGACTTGAGGGCAAGAAAGTCTCCAAGGCCAAAGCCGACAAGCAGACT
TGAGGTGAGGCAATCTCTATG
Found at i:3431003 original size:32 final size:32
Alignment explanation
Indices: 3430942--3431005 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
3430932 GACAGGCAGA
* * *
3430942 TTGAAGGTAAGAAAGTCTCTAGGGCCAAAGCC
1 TTGAAGGTAAGAAAGTCGCCAAGGCCAAAGCC
* *
3430974 TTGAAGGTAAGAAAGTGGCCAAGGTCAAAGCC
1 TTGAAGGTAAGAAAGTCGCCAAGGCCAAAGCC
3431006 GAAAGGCAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.36, C:0.17, G:0.30, T:0.17
Consensus pattern (32 bp):
TTGAAGGTAAGAAAGTCGCCAAGGCCAAAGCC
Found at i:3431528 original size:16 final size:17
Alignment explanation
Indices: 3431507--3431540 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
3431497 CAAAGTCGAC
3431507 AGGCAGACT-TAGGGTG
1 AGGCAGACTCTAGGGTG
*
3431523 AGGCAGTCTCTAGGGTG
1 AGGCAGACTCTAGGGTG
3431540 A
1 A
3431541 AAGCTGACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.24, C:0.15, G:0.41, T:0.21
Consensus pattern (17 bp):
AGGCAGACTCTAGGGTG
Found at i:3432337 original size:78 final size:77
Alignment explanation
Indices: 3432205--3432352 Score: 208
Period size: 78 Copynumber: 1.9 Consensus size: 77
3432195 TAGTCTCTAA
* * **
3432205 GGTCAAAGTTGACAGATAGACTGAAGGTAGGAAAGTCTTTAGGGTCAAAGCCGACAAGTAGACTT
1 GGTCAAAGCTGACAGATAGACTGAAGGTAAGAAAGTCTCCAGGGTCAAAGCCGACAAGTAGACTT
3432270 AAGGTGAGGTAG
66 AAGGTGAGGTAG
* *
3432282 GGTCAAAGCTGACAGGTAGACTTGAGGGTAAGAAAG-CATCCAGGGTCAAAGCCGACAAGTAGAC
1 GGTCAAAGCTGACAGATAGAC-TGAAGGTAAGAAAGTC-TCCAGGGTCAAAGCCGACAAGTAGAC
*
3432346 TTGAGGT
64 TTAAGGT
3432353 AAGGCAATCT
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
77 20 0.32
78 42 0.68
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.19
Consensus pattern (77 bp):
GGTCAAAGCTGACAGATAGACTGAAGGTAAGAAAGTCTCCAGGGTCAAAGCCGACAAGTAGACTT
AAGGTGAGGTAG
Found at i:3432415 original size:162 final size:161
Alignment explanation
Indices: 3432055--3432440 Score: 361
Period size: 162 Copynumber: 2.4 Consensus size: 161
3432045 AACCGATAAG
* *
3432055 CAGACT-AAGGGTAAGAAAGTCTC-AAGGTCAAA-CC-AACAGGCAGACTTGAGGTGAGGCAGCC
1 CAGACTGAA-GGTAAGAAAGTCTCTAAGGTCAAAGCCGAA-AAGCAGACTTAAGGTGA-G--G--
* * *
3432116 TTGAGGGTCAAAGCTAAGAGGCAGACTGAAGGTAAGAAAATCTCTAGGGTCAAAGCCGATAGGTA
59 -T-AGGGTCAAAGCTAACAGGCAGACTGAAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAAGTA
* * * ***
3432181 GACTTGAAATAAGATAGTCTCTAAGGTCAAAGTTGACAGA
122 GACTTGAAATAAGACAATCTCCAAGGTCAAAGCCAACAGA
* * * * * *
3432221 TAGACTGAAGGTAGGAAAGTCTTTAGGGTCAAAGCCGACAAGTAGACTTAAGGTGAGGTAGGGTC
1 CAGACTGAAGGTAAGAAAGTCTCTAAGGTCAAAGCCGAAAAGCAGACTTAAGGTGAGGTAGGGTC
* * *
3432286 AAAGCTGACAGGTAGACTTGAGGGTAAGAAAGCATC-C-AGGGTCAAAGCCGACAAGTAGACTTG
66 AAAGCTAACAGGCAGAC-TGAAGGTAAGAAA--ATCTCTAGGGTCAAAGCCGACAAGTAGACTTG
** * *
3432349 AGGTAAGGCAATCTCCAAGGTCAAAGCCAACAGG
128 AAATAAGACAATCTCCAAGGTCAAAGCCAACAGA
* * * **
3432383 CAGACTTAGGGTAAGAAGGTCTCTAAGGTCAAAGTTGAAAAGCAGACTTAAGGTGAGG
1 CAGACTGAAGGTAAGAAAGTCTCTAAGGTCAAAGCCGAAAAGCAGACTTAAGGTGAGG
3432441 CAGTCTCCAA
Statistics
Matches: 178, Mismatches: 35, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
161 20 0.11
162 108 0.61
163 1 0.01
164 3 0.02
165 1 0.01
166 17 0.10
167 11 0.06
168 16 0.09
169 1 0.01
ACGTcount: A:0.36, C:0.16, G:0.30, T:0.18
Consensus pattern (161 bp):
CAGACTGAAGGTAAGAAAGTCTCTAAGGTCAAAGCCGAAAAGCAGACTTAAGGTGAGGTAGGGTC
AAAGCTAACAGGCAGACTGAAGGTAAGAAAATCTCTAGGGTCAAAGCCGACAAGTAGACTTGAAA
TAAGACAATCTCCAAGGTCAAAGCCAACAGA
Found at i:3432735 original size:17 final size:17
Alignment explanation
Indices: 3432683--3432736 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
3432673 AGGCAGATTA
3432683 AAGGTAAGAAAGTTTCT
1 AAGGTAAGAAAGTTTCT
* * *
3432700 AAGG--ACAAAGCCTT-G
1 AAGGTAAGAAAG-TTTCT
3432715 AAGGTAAGAAAGTTTCT
1 AAGGTAAGAAAGTTTCT
3432732 AAGGT
1 AAGGT
3432737 CAAAGCTGAC
Statistics
Matches: 27, Mismatches: 6, Indels: 8
0.66 0.15 0.20
Matches are distributed among these distances:
15 9 0.33
16 4 0.15
17 14 0.52
ACGTcount: A:0.41, C:0.09, G:0.26, T:0.24
Consensus pattern (17 bp):
AAGGTAAGAAAGTTTCT
Found at i:3432819 original size:116 final size:116
Alignment explanation
Indices: 3432614--3432857 Score: 308
Period size: 116 Copynumber: 2.1 Consensus size: 116
3432604 TGAGGTAGCC
* * * * **
3432614 CTAAGGGCAATGCTGACAGGCAGACTTAAGGTTAGGATGTCTCCAAGGTCAACGTCGATAGGCAG
1 CTAAGGTCAAAGCTGACAGGCAAACTTAAGGTTAGGATGTCTCCAAGGTCAAAGTCGATAAACAG
* * * *
3432679 ATTAAAGGTAAGAAAGTTTCTAAGGACAAAGCCTTGAAGGTAAGAAAGTTT
66 ATTAAAGGTAAGAAAGTCTATAAGGACAAAGCCTTGAAGATAAGAAAGTCT
* * * * * *
3432730 CTAAGGTCAAAGCTGACAGGCAAACTTAAGGTTAGGCTGTCTCTAGGGTTAAAGTTGATAAATAG
1 CTAAGGTCAAAGCTGACAGGCAAACTTAAGGTTAGGATGTCTCCAAGGTCAAAGTCGATAAACAG
* * *
3432795 ATTGAAGGTAAGAAAGTCTATAAGGTCAAAGCCTTTAAGATAAGAAAGTCT
66 ATTAAAGGTAAGAAAGTCTATAAGGACAAAGCCTTGAAGATAAGAAAGTCT
*
3432846 CTAGGGTCAAAG
1 CTAAGGTCAAAG
3432858 TCGACGGCTA
Statistics
Matches: 108, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
116 108 1.00
ACGTcount: A:0.36, C:0.14, G:0.26, T:0.24
Consensus pattern (116 bp):
CTAAGGTCAAAGCTGACAGGCAAACTTAAGGTTAGGATGTCTCCAAGGTCAAAGTCGATAAACAG
ATTAAAGGTAAGAAAGTCTATAAGGACAAAGCCTTGAAGATAAGAAAGTCT
Found at i:3433237 original size:120 final size:119
Alignment explanation
Indices: 3433016--3433243 Score: 276
Period size: 120 Copynumber: 1.9 Consensus size: 119
3433006 GGTAGCCTTG
* * *
3433016 AAGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAAAATATCCAAGGTCAAAGCCGACAAGTGGAC
1 AAGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAAAACATCCAAGGTCAAAGCCAACAAGCGGAC
* * ** *
3433081 TTGAGATGAGACAGTCTCCAAGGTCAACGTGGACAGGTAGACTGAAGGTGAGGT
66 TTGAGATGAGACAATCTCCAAGGTCAAAGTCCACAGGCAGACTGAAGGTGAGGT
* * * * * * *
3433135 AAGGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGCCTCCAGGGTCAAAGTCAACAAGCGGA
1 AAGGTCAAAGCCGACAGGCAGAC-TGAAGGTAAGAAAACATCCAAGGTCAAAGCCAACAAGCGGA
* * * *
3433200 CTTGAGGTGAGGCAATCTCTAGGGTCAAAGTCCACAGGCAGACT
65 CTTGAGATGAGACAATCTCCAAGGTCAAAGTCCACAGGCAGACT
3433244 TAGGGCAAGA
Statistics
Matches: 89, Mismatches: 19, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
119 21 0.24
120 68 0.76
ACGTcount: A:0.35, C:0.19, G:0.31, T:0.16
Consensus pattern (119 bp):
AAGGTCAAAGCCGACAGGCAGACTGAAGGTAAGAAAACATCCAAGGTCAAAGCCAACAAGCGGAC
TTGAGATGAGACAATCTCCAAGGTCAAAGTCCACAGGCAGACTGAAGGTGAGGT
Found at i:3433323 original size:84 final size:85
Alignment explanation
Indices: 3433135--3433323 Score: 193
Period size: 84 Copynumber: 2.2 Consensus size: 85
3433125 AAGGTGAGGT
* * * * *
3433135 AAGGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGCCTCCAGGGTCAAAGTCAACAAGCGGA
1 AAGGTCAAAGCCGACAGGCAGACTTGAGGGCAAGAAAGCCTCCAAGGTCAAAGTCAACAAGCAGA
* *
3433200 CTTGAGGTGAGGCAATCTCT
66 CTTAAGGTGAGGCAATCTCC
* ** * * * * *
3433220 AGGGTCAAAGTCC-ACAGGCAGACTT-AGGGCAAGATGGCCTCCAAGGTCAAGGTCGATAGGTAG
1 AAGGTCAAAG-CCGACAGGCAGACTTGAGGGCAAGAAAGCCTCCAAGGTCAAAGTCAACAAGCAG
*
3433283 ACTTAAGGTGAGGCAGTCTCC
65 ACTTAAGGTGAGGCAATCTCC
* *
3433304 AAGGTCAATGCCGAGAGGCA
1 AAGGTCAAAGCCGACAGGCA
3433324 AACTAAGGAT
Statistics
Matches: 83, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
83 2 0.02
84 60 0.72
85 19 0.23
86 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.32, T:0.17
Consensus pattern (85 bp):
AAGGTCAAAGCCGACAGGCAGACTTGAGGGCAAGAAAGCCTCCAAGGTCAAAGTCAACAAGCAGA
CTTAAGGTGAGGCAATCTCC
Found at i:3433488 original size:32 final size:32
Alignment explanation
Indices: 3433452--3433512 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
3433442 AATAGGCAGA
* * *
3433452 TTGAAGGTAAGAAAGTCTCTAGGGTCAAAGCC
1 TTGAAAGTAAGAAAGCCTCTAAGGTCAAAGCC
3433484 TTGAAAGTAAGAAAGCCTCTAAGGTCAAA
1 TTGAAAGTAAGAAAGCCTCTAAGGTCAAA
3433513 ACTAACAGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (32 bp):
TTGAAAGTAAGAAAGCCTCTAAGGTCAAAGCC
Found at i:3433605 original size:42 final size:43
Alignment explanation
Indices: 3433558--3434525 Score: 176
Period size: 42 Copynumber: 23.3 Consensus size: 43
3433548 GCCAAAGCTA
* * **
3433558 ACAGGCAAACTTGAGGTTAAG-TTGTCTCTAGGGTCAAAGTCG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
3433600 ACAGGCAGA-TTGAAGG-TAAGAATGTCTCTAGGGTCAAAACCG
1 ACAGGCAGACTTG-AGGTTAAGAATGTCTCTAGGGTCAAAACCG
* * * ** *
3433642 ATAGGCAGACTTGAGG-TAAGGTACT-T-TCCAAAGTCAAAGCCG
1 ACAGGCAGACTTGAGGTTAA-G-AATGTCTCTAGGGTCAAAACCG
* * * * * * ** *
3433684 AAAGGTAGACTTG-CGTTGAG-GTAGTCTCCAGGGTCAAAGTCA
1 ACAGGCAGACTTGAGGTTAAGAAT-GTCTCTAGGGTCAAAACCG
* * * * **
3433726 ACAGGTAGAC-TGAAGG-TAGGAAAGTCTCCAGGGT-AAAAGCTA
1 ACAGGCAGACTTG-AGGTTAAGAATGTCTCTAGGGTCAAAA-CCG
* * * * * ** * * *
3433768 ACAGGTAGACTTGAGATGAGGCA-GTCGATATGGTCAAAGCTG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
* * * * *
3433810 ACAGGCAAACTT-AGGATAAAAAAGTCT-TCGAGGTCAAAACCG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAG-GGTCAAAACCG
* *
3433852 ACAGGCAGACTAGAGG-TGAGCCAA--TCTCTAGGGTCAAAACCG
1 ACAGGCAGACTTGAGGTTAAG--AATGTCTCTAGGGTCAAAACCG
* * * * * * * *
3433894 AAAGGCAGAC-TAAGGGTATGAAAGTCTCTAAGGTCAAAGCCA
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
* * * * * * *
3433936 ATAGGCGGACTTGA-G----GCA-CTCTCCATGGTCAAAGCCG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
* **
3433973 ACAGGCAGAC-TGAGAG-GAAGAAAATCTCCTA-GGTCAAAACCG
1 ACAGGCAGACTTGAG-GTTAAGAATGTCT-CTAGGGTCAAAACCG
** * * * *
3434015 ATTGGTAGACTTGA-GATGAG-ATAGTCTCTAAGGTCAAAACCG
1 ACAGGCAGACTTGAGGTTAAGAAT-GTCTCTAGGGTCAAAACCG
* * * * * * * **
3434057 ATC-GACAAACAAT-AGG-TAAGAAAGTCTCCAAGGTCAAAGCTA
1 A-CAGGCAGAC-TTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
* *
3434099 ACAGGCAGACTTGAGG-T--G--TG---GTAGGGTCAAAGCCG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
* * ***
3434134 ACAGGTAGACTTGAGGGTAAGAAAT-TCTCTAGGGTCAAAGTTG
1 ACAGGCAGACTTGAGGTTAAG-AATGTCTCTAGGGTCAAAACCG
* * * * * *
3434177 -CTTGGCAGACTTGAGGTGAGGCAA--TCTCTAGGGGCAAAGCTG
1 AC-AGGCAGACTTGAGGTTAAG-AATGTCTCTAGGGTCAAAACCG
* *
3434219 ACAGGCAGACTT-AGGGTAA-AATGTCTCTAGGGTCAAATTCC-
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAA-ACCG
* * * * * * **
3434260 ACAGGCAGACTTGAGCG-GAGGTA-GTCACCAGGTTCAAAGTCG
1 ACAGGCAGACTTGAG-GTTAAGAATGTCTCTAGGGTCAAAACCG
* * * **
3434302 ACAGGCATA-GTGAAGG-TAAGAAAGTCTCTAGGGTCAACGCCG
1 ACAGGCAGACTTG-AGGTTAAGAATGTCTCTAGGGTCAAAACCG
* * * * * * * *
3434344 ATAGGTAGACTTGAGGTGAGGTA-GTCTCCAGGGTCAAAGCTG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
* * * *
3434386 ACAGACAGACTT-AGGGTAAGAAGGTCTCTAGGGTCAAAGA-CA
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAA-ACCG
* * * * * *
3434428 ACAAGCAGACTTAAGGTGAAGTA-GTCTCTATGGTCAATACCG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
* * * * * * * * *
3434470 AGAGACGGAC-TAAGGGTAAGAAGGTCTCCAAGGTCAAAGCCG
1 ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
*
3434512 AGAGGCAGACTTGA
1 ACAGGCAGACTTGA
3434526 AAGGAGGTAG
Statistics
Matches: 671, Mismatches: 184, Indels: 141
0.67 0.18 0.14
Matches are distributed among these distances:
35 25 0.04
36 4 0.01
37 23 0.03
38 5 0.01
39 3 0.00
40 3 0.00
41 85 0.13
42 444 0.66
43 75 0.11
44 4 0.01
ACGTcount: A:0.33, C:0.18, G:0.29, T:0.19
Consensus pattern (43 bp):
ACAGGCAGACTTGAGGTTAAGAATGTCTCTAGGGTCAAAACCG
Found at i:3433928 original size:84 final size:84
Alignment explanation
Indices: 3433490--3434581 Score: 606
Period size: 84 Copynumber: 13.2 Consensus size: 84
3433480 AGCCTTGAAA
* * ** * * * *
3433490 GTAAGAAAGCCTCTAAGGTCAAAACTAACAGGCAGACTTGAGATGAGGCAGTC-CGAGGGCCAAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAA
** * *
3433554 GCTAACAGGCAAACTTGAGG
66 GCCGACAGGCAGAC-TAAGG
* ** * * * *
3433574 TTAAG-TTGTCTCTAGGGTCAAAGTCGACAGGCAGA-TTGAAGGT-AAGAATGTCTCTAGGGTCA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGTA-GTCTCTAGGGTCA
* * *
3433636 AAACCGATAGGCAGACT-TGAG
64 AAGCCGACAGGCAGACTAAG-G
** * * * * * * * * *
3433657 GTAAGGTACTTTCCAAAGTCAAAGCCGAAAGGTAGACTTGCGTTGAGGTAGTCTCCAGGGTCAAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAA
* * *
3433722 GTCAACAGGTAGACTGAA-G
66 GCCGACAGGCAGACT-AAGG
* * * * ** * * * ** *
3433741 GTAGGAAAGTCTCCAGGGTAAAAGCTAACAGGTAGACTTGAGATGAGGCAGTCGATATGGTCAAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAA
* * *
3433806 GCTGACAGGCAAACTTAGG
66 GCCGACAGGCAGACTAAGG
* * * * * ** *
3433825 ATAAAAAAGTCT-TCGAGGTCAAAACCGACAGGCAGACTAGAGGTGAGCCAATCTCTAGGGTCAA
1 GTAAGAAAGTCTCT-AAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAA
* *
3433889 AACCGAAAGGCAGACTAAGG
65 AGCCGACAGGCAGACTAAGG
* * * * * * * *
3433909 GTATGAAAGTCTCTAAGGTCAAAGCCAATAGGCGGAC-T----TGAGGCACTCTCCATGGTCAAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAA
*
3433969 GCCGACAGGCAGACTGAGAG
66 GCCGACAGGCAGACTAAG-G
* * ** * * * *
3433989 G-AAGAAAATCTCCT-AGGTCAAAACCGATTGGTAGACTTGAGATGAGATAGTCTCTAAGGTCAA
1 GTAAGAAAGTCT-CTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAA
* * * *
3434052 AACCGATC-GACAAAC-AATAG
65 AGCCGA-CAGGCAGACTAA-GG
* ** *
3434072 GTAAGAAAGTCTCCAAGGTCAAAGCTAACAGGCAGACTTGAGGT---GT-G---GTAGGGTCAAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAA
* *
3434130 GCCGACAGGTAGACTTGAGG
66 GCCGACAGGCAGAC-TAAGG
* * ** * * * *
3434150 GTAAGAAATTCTCTAGGGTCAAAGTTG-CTTGGCAGACTTGAGGTGAGGCAATCTCTAGGGGCAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGAC-AGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAA
* *
3434214 AGCTGACAGGCAGACTTAGG
65 AGCCGACAGGCAGACTAAGG
* * * * * *
3434234 GTAA-AATGTCTCTAGGGTCAAATTCC-ACAGGCAGACTTGAGCG-GAGGTAGTCACCAGGTTCA
1 GTAAGAAAGTCTCTAAGGTCAAA-GCCGACAGGCAGACTTGAG-GTGAGGTAGTCTCTAGGGTCA
* * *
3434296 AAGTCGACAGGCATAGTGAA-G
64 AAGCCGACAGGCAGACT-AAGG
* * * * *
3434317 GTAAGAAAGTCTCTAGGGTCAACGCCGATAGGTAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAA
* * *
3434382 GCTGACAGACAGACTTAGG
66 GCCGACAGGCAGACTAAGG
* * * * * * * *
3434401 GTAAGAAGGTCTCTAGGGTCAAAGACAACAAGCAGACTTAAGGTGAAGTAGTCTCTATGGTCAAT
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAA-
* * *
3434466 A-CCGAGAGACGGACTAAGG
65 AGCCGACAGGCAGACTAAGG
* * * * *
3434485 GTAAGAAGGTCTCCAAGGTCAAAGCCGAGAGGCAGACTTGAAAG-GAGGTAGTCTCTAAGGTCAA
1 GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTG-AGGTGAGGTAGTCTCTAGGGTCAA
* * *
3434549 AGCCGATAGGTAGACTGAGG
65 AGCCGACAGGCAGACTAAGG
*
3434569 GTAGGAAAGTCTC
1 GTAAGAAAGTCTC
3434582 CTAGTTCAAA
Statistics
Matches: 749, Mismatches: 214, Indels: 90
0.71 0.20 0.09
Matches are distributed among these distances:
76 1 0.00
77 18 0.02
78 37 0.05
79 59 0.08
80 6 0.01
81 2 0.00
82 7 0.01
83 103 0.14
84 484 0.65
85 32 0.04
ACGTcount: A:0.34, C:0.18, G:0.29, T:0.19
Consensus pattern (84 bp):
GTAAGAAAGTCTCTAAGGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAA
GCCGACAGGCAGACTAAGG
Found at i:3434009 original size:163 final size:159
Alignment explanation
Indices: 3433797--3434444 Score: 400
Period size: 163 Copynumber: 4.0 Consensus size: 159
3433787 GGCAGTCGAT
* * * * * *
3433797 ATGGTCAAAGCTGACAGGCAAACT--TAGGATAAAAAAGTCTTCGAGGTCAAAACCGACAGGCAG
1 ATGGTCAAAGCCGACAGGCAGACTGAGAGGA-AGAAAA-TC-TCTAGGTCAAAACCGACTGGCAG
* *
3433860 ACTAGAGGTGAGCCAATCTCTAGGGTCAAAACCGAAAGGCAGACTAAGGGTATGAAAGTCTCTAA
63 ACTTGAGGTGAGACAATCTCTAGGGTCAAAACCGAAAGGCAGACTAAGGGTA-GAAAGTCTCTAA
* *
3433925 GGTCAAAGCCAATAGGCGGACTTGAGGCACTCT-CC
127 GGTCAAAGCCAACAGGCAGACTTGAGG---TCTGCC
* *
3433960 ATGGTCAAAGCCGACAGGCAGACTGAGAGGAAGAAAATCTCCTAGGTCAAAACCGATTGGTAGAC
1 ATGGTCAAAGCCGACAGGCAGACTGAGAGGAAGAAAATCT-CTAGGTCAAAACCGACTGGCAGAC
* * * * ** * * * *
3434025 TTGAGATGAGATAGTCTCTAAGGTCAAAACCGATCGACAAAC-AATAGGTAAGAAAGTCTCCAAG
65 TTGAGGTGAGACAATCTCTAGGGTCAAAACCGAAAGGCAGACTAA-GGGT-AGAAAGTCTCTAAG
* * **
3434089 GTCAAAGCTAACAGGCAGACTTGAGGTGTGGT
128 GTCAAAGCCAACAGGCAGACTTGAGGTCTGCC
* * * ***
3434121 AGGGTCAAAGCCGACAGGTAGACTTGAG-GGTAAGAAATTCTCTAGGGTCAAAGTTG-CTTGGCA
1 ATGGTCAAAGCCGACAGGCAGAC-TGAGAGG-AAGAAAATCTCTA-GGTCAAAACCGAC-TGGCA
* * * * * *
3434184 GACTTGAGGTGAGGCAATCTCTAGGGGCAAAGCTGACAGGCAGACTTAGGGTA-AAATGTCTCTA
62 GACTTGAGGTGAGACAATCTCTAGGGTCAAAACCGAAAGGCAGACTAAGGGTAGAAA-GTCTCTA
* * * *
3434248 GGGTCAAATTCC-ACAGGCAGACTTGAGCGGAGGTAGTCACC
126 AGGTCAAA-GCCAACAGGCAGACTT-----GAGGT-CT-GCC
* * * * ** *
3434289 A-GGTTCAAAGTCGACAGGCATAGTGA-AGGTAAGAAAGTCTCTAGGGTCAACGCCGA-TAGGTA
1 ATGG-TCAAAGCCGACAGGCAGACTGAGAGG-AAGAAAATCTCTA-GGTCAAAACCGACT-GGCA
** * * * * * * * *
3434351 GACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCTGACAGACAGACTTAGGGTAAGAAGGTCTCTA
62 GACTTGAGGTGAGACAATCTCTAGGGTCAAAACCGAAAGGCAGACTAAGGGT-AGAAAGTCTCTA
* * * *
3434416 GGGTCAAAGACAACAAGCAGACTTAAGGT
126 AGGTCAAAGCCAACAGGCAGACTTGAGGT
3434445 GAAGTAGTCT
Statistics
Matches: 384, Mismatches: 74, Indels: 54
0.75 0.14 0.11
Matches are distributed among these distances:
160 5 0.01
161 52 0.14
162 65 0.17
163 119 0.31
164 6 0.02
165 4 0.01
166 6 0.02
167 82 0.21
168 43 0.11
169 2 0.01
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.19
Consensus pattern (159 bp):
ATGGTCAAAGCCGACAGGCAGACTGAGAGGAAGAAAATCTCTAGGTCAAAACCGACTGGCAGACT
TGAGGTGAGACAATCTCTAGGGTCAAAACCGAAAGGCAGACTAAGGGTAGAAAGTCTCTAAGGTC
AAAGCCAACAGGCAGACTTGAGGTCTGCC
Found at i:3434580 original size:42 final size:42
Alignment explanation
Indices: 3434120--3438388 Score: 512
Period size: 42 Copynumber: 102.7 Consensus size: 42
3434110 TGAGGTGTGG
* *
3434120 TAGGGTCAAAGCCGACAGGTAGACTTGAGGGTAAGAAATTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
** * * *
3434163 TAGGGTCAAAGTTG-CTTGGCAGACTTGA-GGTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGAC-AGGCAGAC-TGAGGGT-AAGAAAGTCTC
* * * *
3434205 TAGGGGCAAAGCTGACAGGCAGACTTAGGGTAA-AATGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* ** *
3434246 TAGGGTCAAATTCC-ACAGGCAGACTTGAGCGG--AGGTAGTCAC
1 TAGGGTCAAA-GCCGACAGGCAGAC-TGAG-GGTAAGAAAGTCTC
* * * * * *
3434288 CAGGTTCAAAGTCGACAGGCATAGTGAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * **
3434330 TAGGGTCAACGCCGATAGGTAGACTTGA-GGTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * *
3434372 CAGGGTCAAAGCTGACAGACAGACTTAGGGTAAGAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * *
3434414 TAGGGTCAAAGACAACAAGCAGACTTAAGGTGAAG-TAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGT-AAGAAAGTCTC
* * * * * *
3434456 TATGGTCAATA-CCGAGAGACGGACTAAGGGTAAGAAGGTCTC
1 TAGGGTCAA-AGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * **
3434498 CAAGGTCAAAGCCGAGAGGCAGACTTGAAAGG--AGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TG-AGGGTAAGAAAGTCTC
* * * *
3434540 TAAGGTCAAAGCCGATAGGTAGACTGAGGGTAGGAAAGTCTCC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCT-C
* * * ** * *
3434583 TA-GTTCAAAACC-ATTAGGCAGACTTG-GGAAAAGGCAA-TCCC
1 TAGGGTCAAAGCCGA-CAGGCAGAC-TGAGGGTAA-GAAAGTCTC
* * ** * * * * * ** *
3434624 CAAGGTCAAAGTTGACAAGTAGGATTGAGGTTAGGCTA-TCTT
1 TAGGGTCAAAGCCGACAGGCA-GACTGAGGGTAAGAAAGTCTC
* * *** * ** *
3434666 TAGGGTCGATGCCGACAAATAGACTAAAAGTAAGAAAGTATC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * **
3434708 CAGGGTCAAAGCCGACAGGCAGAC-GTAAGGTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTG-AGGGTAAGAAAGTCTC
* * ** * * * * * *
3434750 TAAGGTGAAAATCAACAAGCAGACTAAAGGTAGGAAAGTGTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * **
3434792 CAAGGTTAAAGTCGACAGGCAGACTTGA-GATGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * *
3434834 TAAGGTCAAATCCAATAGGCCA-ATTGAGGGTCAA-AAAGTCTC
1 TAGGGTCAAAGCCGACAGG-CAGACTGAGGGT-AAGAAAGTCTC
* ** * * *
3434876 TAAGGTCAAAGTTGACTA-GCAGACTTGA-GATAAGGAAGTCTT
1 TAGGGTCAAAGCCGAC-AGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * *
3434918 TAGGGTGAAAGCC-A-ATGAGTAGATTGAGGGTAAGAAAGTCTA
1 TAGGGTCAAAGCCGACA-G-GCAGACTGAGGGTAAGAAAGTCTC
* * * * ** *
3434960 AAGGGTCAAA-CCAATAGGCAGACTTGA-GGTGAGGCAGCCT-
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
** * * * *
3435000 TGAGGGTCAAAGCTAATAGGCAAACTAAGGGTAAGAAAATCTC
1 T-AGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * **
3435043 TAGGGTCAAAGCCGATAAGTAGGCTTGA-GATGAGACGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * * *
3435085 CAAGGTGAAAGTCGACAGGTAGACTGAAGGTAAGAAAATCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
** *
3435127 TAGGGTCAAAGCCGATGGGCAGACTTGA-GGT--G--AG---G
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* ** * * *
3435162 TAAGGTCAAAGTTGACAAGTAGACGTGAGGGTAGGAAAG-CATC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTC-TC
* * * * * * * * *
3435205 TAGGGTTAAAGCTGGCAAGTAGAATTGA-GTTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAG-ACTGAGGGT-AAGAAAGTCTC
* * * * *
3435247 TAGGGTCAAAGCCAACAGGAAAACTTAGGGTAAGAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * * * *
3435289 CAAGGTGAAAGTCGATAAGCAGACTTAAGGTGAAG-CAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGT-AAGAAAGTCTC
* * * ** * *
3435331 CAAGGTCAATGTGGAGAGGCAGACTGAGGATAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * ** *
3435373 TAAGGTCAAAGCTGACACGCAGACTTG-TGATGAGGTAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * *
3435415 TAGGGTCAAAGCTGACAGGCGGATTAAGGGTAAAAAAGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * ***
3435456 TCAAGGTCAAAACCAACAAGC-GAACTTG-GGATGAGGCTGTC-C
1 T-AGGGTCAAAGCCGACAGGCAG-AC-TGAGGGTAAGAAAGTCTC
* * * * * **
3435498 TCAAGGTCAAAGCTGATAGGCAGACTTAAGGTTAAGCTA--CGTC
1 T-AGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTC-TC
** * * * *
3435541 TAGGGTCAAAGTTGATAAGCAGATTGAAGGTAA-AAAGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAA-GTCTC
* *
3435583 TAGGGTCAAA---G-C---C---TTGAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * ** *
3435615 TAAGGTCAAAGTCGACCGCCAGACTTGA-GGCAAGGTACTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * * ** *
3435657 TAGGGTCAAAGTCGAAAGGCAGACTTATGTTGAGGTAGCCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * ** * * *
3435699 CATGGTCAAAGTTGACAGGCCGATTGAGGGTAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * *
3435741 TAGGGTCAAAGTCGACAGGCGGACTAAGGATAAAAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * *
3435783 CAAGGTCAAAGCCGACAGGCAGACT-AGAGGTGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAG-GGT-AAGAAAGTCTC
* * * *
3435825 TAGGGTCAAAGCC-AAAGGTAGACTAAGGGTATGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * * **
3435866 TAGGGTTAAAGCCAATAGGCATACTTTA-GATGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* ** ** * * *
3435908 CATAGTCAAAGTTGATAGGCAAACTGAGGGTAAGAAAATCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * *
3435950 TAAGGTCAAAGCCGATAGGTAGGCTTGA-GATGAGGTAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGT-AAGAAAGTCTC
* * * * *
3435992 TAGGGTCAAAGTCGACAGGTAGACTGAAGGTAGGAAAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * * ** *
3436034 TAGGGTTAAAACCAACA-ACAAACTTGA-GATGAGGTAGTCCC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * *** *
3436075 TAGGGTTAAAG-CTACCAGGCAAACTTGA-GGTTAGGCTGCCTC
1 TAGGGTCAAAGCCGA-CAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * *
3436117 CAAGGTCAAAGTCAACAGGCAGACTGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * **
3436159 CAAGGTTAAAG-C--CTTG-A-A--GA---TAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * ** *
3436191 TAGGGTCAAAGCCGACAAGCAGACTTGA-GGTGAGGTACTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * * * * **
3436233 CAAGGTCAAAACCGAAATGCAGACTTG-TGTTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * *
3436275 TAAGGTCAAAGTCGACAAGAAAACTGAGGGTAGGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
** * * ** *
3436317 TAGGGTCAAAG-TTAGCAGGCAGACTTGA-GATGAGGCACTCTC
1 TAGGGTCAAAGCCGA-CAGGCAGAC-TGAGGGTAAGAAAGTCTC
*
3436359 TAGTGTCAAAGCCGACAGGCA-ACCTGAGGGTAAGAAAGTCTCC
1 TAGGGTCAAAGCCGACAGGCAGA-CTGAGGGTAAGAAAGTCT-C
* * * * ** *
3436402 TA-GGTCAAAACCGACAGGTAGGCT-AGAGGTGAGGCCA-TTTCC
1 TAGGGTCAAAGCCGACAGGCAGACTGAG-GGT-AAGAAAGTCT-C
* * * * * *
3436444 TA-GGTCAAAGTCGACAGGTAAACTAAGTGTGAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * **
3436485 TCA-GGTCAAAGCCAATAGGCAGACTTGA-GGTGAGGTAGTCTC
1 T-AGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * * * * *
3436527 CAAGGCCAAAGCCGACGGGTATACTAAGGCTGAGAAAGTCTAC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCT-C
* * * * * * *
3436570 CA-GGTCAAAGCCAACAGGCAAACT-AGATGTGACG-CAGTCGC
1 TAGGGTCAAAGCCGACAGGCAGACTGAG-GGT-AAGAAAGTCTC
* * * * *
3436611 CAGGGTCAAAGCCGAAAGGTAAACTAAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * **
3436653 TAAGATCAAAGCCAACAGGCAGACTTGA-GGTAAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * *
3436695 -CGTGGCCAAAGCTGACAGGCAGATTGAGGCTAAGAAAATCTC
1 TAG-GGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * *
3436737 TAAGGTCAAAGTCGACAGGTAAACTTGA-GATGAGATAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * * *
3436779 CAAGGTTAAGGCCGAGAGGCAGACTGAAGGTAA-AAAGGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAA-GTCTC
* *
3436821 TAGGGTCAAAGCTGATAGGCAGACTTGA-GGT--G--AG---C
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * *
3436856 TAGGGTAAAAGCTGATAGGTAGCCTTGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * ** **
3436899 CAAGGTCAAAGCTGTCAGGGAGACTTGA-GGTGGGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* ** * * * * *
3436941 TAGGGTCAAAGCCAATGGGCGGGCTTAGGATAAGAAGGTCTAC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCT-C
* * * **
3436984 -AAGGTCAAAGTCGACAGGCAAACTTGA-GGTAAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * ** * *
3437025 AAAGGTCAATGCTAAGAGGTAGACT-ATGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGA-GGGTAAGAAAGTCTC
* * * ** * * *
3437067 CAAGGTCAAAGCCGAGAGATAGACTGAGAGTAGGAAAGTTTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * *
3437109 TCGGGTCAAAACCAATAGGCAGACTTGA-GATGAGGCAA-TCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGT-AAGAAAGTCTC
* * * * * * *** *
3437151 CAAGGTCAAAGCTGATAGGCAGATTTGA-GGTTAGGCTGTCGC
1 TAGGGTCAAAGCCGACAGGCAGA-CTGAGGGTAAGAAAGTCTC
* * * * * * *
3437193 CAGGGTCAAAGTCGATAGACTGACTGAAGATAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * **
3437235 CAAGGTCAATGCCGACAGGTAGACTTGA-GGTGAGGTAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * * **
3437277 TAAGGTCAAAGCCGAAAGGCAAACT-TGTGTTAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * ** * * * * *
3437318 CAAGGTCAAAATCGAGAAGTAGACTGAAGGTAAGATAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * ** * * * *
3437360 TAGGG-CAAAAGTCGACAGGTAGATTTGAGATTAGGCAA-CCTT
1 TAGGGTC-AAAGCCGACAGGCAGA-CTGAGGGTAAGAAAGTCTC
* * * * *
3437402 TAGGGTCAAAGTCGAAAGGGAGACTGA-GGTAAGAAGGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * **
3437443 TAGGGTCAAAGCTGACAGGCAAACTTGA-GGTGAGATGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * ** **
3437485 CAAGGTCAAAGCTGAGAGGCAGACTTGA-GGTGCGACGGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * ***
3437527 TAAGGTCAAAGTTC-ACAGGCAGACTAAAAATAAGAAAGTCTC
1 TAGGGTCAAAG-CCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * *
3437569 TAGAGTCAAAGCTGAC-GGATAGACTTGA-GGTAAG---G---C
1 TAGGGTCAAAGCCGACAGG-CAGAC-TGAGGGTAAGAAAGTCTC
* * * * * *
3437605 -AAGGTTAAAGCCGAC-GGCTAGACTCGA-GATGATG-CAGTTTC
1 TAGGGTCAAAGCCGACAGGC-AGACT-GAGGGT-AAGAAAGTCTC
* * * * * * *
3437646 CAAGGTCAACGTCGATAGGCAGATTGAGAGTAAGAAAGTCTCC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCT-C
* * * * * * * * *
3437689 AAAGG-CAAAGCTGACAAGTAGACTTGA-GATGAGGAAGTATC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * *
3437730 CAAGGTCAAAGCTGACAAGTAGACTGAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* ** *** ** * * **
3437772 CAAAGTCAAAGTTAACAAACAGACTTGA-AGTGAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * *
3437814 CAAGGTCAAAGCCGATAGGCAAACTAAAGGTAAGAAAGTCT-
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * ** * *
3437855 TCAGGATTAAAGCCGATGGGCAAACT-AGAGGT--G--AG--GC
1 T-AGGGTCAAAGCCGACAGGCAGACTGAG-GGTAAGAAAGTCTC
* * * * *
3437892 -AGGGACAAAGTCGACAAGCAGACTTAAAGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * **
3437934 TAGGGTCAAAGTCGACAAGCAGACTTGA-GGTAAGGCAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * ** *
3437976 CAAGGTCAAAGCCGACAGTTA-AGCTGAAGGTAAGAAAGTCTCC
1 TAGGGTCAAAGCCGACAGGCAGA-CTGAGGGTAAGAAAGTCT-C
** * * * * * **
3438019 AAAGTTAAAGTCAAAGCCAATAGGCAGACTTAAGGTGAGGTAGTCTC
1 -----TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * *
3438066 TAGAGTCAAAGCCAATAGGTAGACTAAGGGTAAGAAAGTCTT
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * **
3438108 TAGGGTCGAAGCTGACTA-GTAGACTTGA-GATGAGGTAGTCTAC
1 TAGGGTCAAAGCCGAC-AGGCAGAC-TGAGGGTAAGAAAGTCT-C
* * * *
3438151 TA-GCTTAAAGCAGACAGGCAGACTAAGGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * * * * * * * ** *
3438192 AATGGTTAAGGCTGAGAGGCAGACTTGA-GTTGAGGCAGCCT-
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * *
3438233 TGAGGG-AAAAGCTGACAGGCAGACTGAGGGAAAGAAAATCTT
1 T-AGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* ** * * * *
3438275 TAAGGTCAAAGCCGACAGAAAGACTTGA-GATGAGACAGTATC
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGGGTAAGAAAGTCTC
* * * * * *
3438317 CAAGGTCAAAGTCAAGAGGCAGACTGATGGTAAGAAAGTCTC
1 TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
* * *
3438359 TGGGGTCAAAGCCGATAGGCAAACTTGAGG
1 TAGGGTCAAAGCCGACAGGCAGAC-TGAGG
3438389 AGAGGTAGGG
Statistics
Matches: 2981, Mismatches: 1005, Indels: 480
0.67 0.23 0.11
Matches are distributed among these distances:
32 44 0.01
33 4 0.00
34 1 0.00
35 87 0.03
36 15 0.01
37 3 0.00
38 9 0.00
39 7 0.00
40 31 0.01
41 328 0.11
42 2162 0.73
43 255 0.09
44 4 0.00
47 1 0.00
48 29 0.01
49 1 0.00
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.19
Consensus pattern (42 bp):
TAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAGAAAGTCTC
Found at i:3435605 original size:32 final size:32
Alignment explanation
Indices: 3435564--3435625 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
3435554 GATAAGCAGA
*
3435564 TTGAAGGTAA-AAAGGTCTCTAGGGTCAAAGCC
1 TTGAAGGTAAGAAA-GTCTCTAAGGTCAAAGCC
3435596 TTGAAGGTAAGAAAGTCTCTAAGGTCAAAG
1 TTGAAGGTAAGAAAGTCTCTAAGGTCAAAG
3435626 TCGACCGCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
32 25 0.89
33 3 0.11
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.23
Consensus pattern (32 bp):
TTGAAGGTAAGAAAGTCTCTAAGGTCAAAGCC
Found at i:3436097 original size:167 final size:169
Alignment explanation
Indices: 3435774--3436104 Score: 397
Period size: 167 Copynumber: 2.0 Consensus size: 169
3435764 CTAAGGATAA
*
3435774 AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGAGGTGAGGCAATCTCTAGGGTCAAAGCCA
1 AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGAGATGAGGCAATCTCTAGGGTCAAAGCCA
* * * * * *
3435839 AAGGTAGACTAAGGGTATGAAAGTCTCTAGGGTTAAAGCCAATAGGCATACTTTAGATGAGGTAG
66 AAGGTAGACTAAGGGTAGGAAAGTCTCTAGGGTTAAAACCAACAGACAAACTTGAGATGAGGTAG
* *
3435904 TCTCCATAGTCAAAGTTGATAGGCAAAC-TGAGGGTAAG
131 TCTCCATAGTCAAAGCTGACAGGCAAACTTGAGGGTAAG
* * * * * * *
3435942 AAAA-TCTCTAAGGTCAAAGCCGATAGGTAGGCTTGAGATGAGGTAATCTCTAGGGTCAAAGTCG
1 AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGAGATGAGGCAATCTCTAGGGTCAAAG-CC
* *
3436006 ACAGGTAGACTGAA-GGTAGGAAAGTCTTTAGGGTTAAAACCAACA-ACAAACTTGAGATGAGGT
65 AAAGGTAGACT-AAGGGTAGGAAAGTCTCTAGGGTTAAAACCAACAGACAAACTTGAGATGAGGT
*
3436069 AGTC-CC-TAGGGTTAAAGCT-ACCAGGCAAACTTGAGG
129 AGTCTCCATA--GTCAAAGCTGA-CAGGCAAACTTGAGG
3436105 TTAGGCTGCC
Statistics
Matches: 138, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
165 2 0.01
166 3 0.02
167 84 0.61
168 47 0.34
169 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.28, T:0.21
Consensus pattern (169 bp):
AAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAGAGATGAGGCAATCTCTAGGGTCAAAGCCA
AAGGTAGACTAAGGGTAGGAAAGTCTCTAGGGTTAAAACCAACAGACAAACTTGAGATGAGGTAG
TCTCCATAGTCAAAGCTGACAGGCAAACTTGAGGGTAAG
Found at i:3436124 original size:167 final size:167
Alignment explanation
Indices: 3435780--3436141 Score: 385
Period size: 167 Copynumber: 2.2 Consensus size: 167
3435770 ATAAAAAAGT
*
3435780 CTCCAAGGTCAAAGCCGACAGGCAGACTAGAGGTGAGGCAATCTCTAGGGTCAAAGCCAAAGGTA
1 CTCCAAGGTCAAAGCCGACAGGCAGACTAGAGATGAGGCAATCTCTAGGGTCAAAGCCAAAGGTA
* * * * * *
3435845 GACTAAGGGTATGAAAGTCTCTAGGGTTAAAGCCAATAGGCATACTTTAGATGAGGTAGTCTCCA
66 GACTAAGGGTAGGAAAGTCTCTAGGGTTAAAACCAACAGACAAACTTGAGATGAGGTAGTCTCCA
* * *
3435910 TAGTCAAAGTTGATAGGCAAACTGAGGGTAAGAAAAT
131 TAGTCAAAGCTGACAGGCAAACTGAGGGTAAGAAAAC
* * * * * * * *
3435947 CTCTAAGGTCAAAGCCGATAGGTAGGCTTGAGATGAGGTAATCTCTAGGGTCAAAGTCGACAGGT
1 CTCCAAGGTCAAAGCCGACAGGCAGACTAGAGATGAGGCAATCTCTAGGGTCAAAG-CCAAAGGT
*
3436012 AGACTGAA-GGTAGGAAAGTCTTTAGGGTTAAAACCAACA-ACAAACTTGAGATGAGGTAGTC-C
65 AGACT-AAGGGTAGGAAAGTCTCTAGGGTTAAAACCAACAGACAAACTTGAGATGAGGTAGTCTC
* * ****
3436074 C-TAGGGTTAAAGCT-ACCAGGCAAACTTGA-GGTTAGGCTGC
129 CATA--GTCAAAGCTGA-CAGGCAAAC-TGAGGGTAAGAAAAC
* *
3436114 CTCCAAGGTCAAAGTCAACAGGCAGACT
1 CTCCAAGGTCAAAGCCGACAGGCAGACT
3436142 GAGGGTAAGA
Statistics
Matches: 158, Mismatches: 31, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
165 2 0.01
166 3 0.02
167 110 0.70
168 41 0.26
169 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (167 bp):
CTCCAAGGTCAAAGCCGACAGGCAGACTAGAGATGAGGCAATCTCTAGGGTCAAAGCCAAAGGTA
GACTAAGGGTAGGAAAGTCTCTAGGGTTAAAACCAACAGACAAACTTGAGATGAGGTAGTCTCCA
TAGTCAAAGCTGACAGGCAAACTGAGGGTAAGAAAAC
Found at i:3437376 original size:125 final size:126
Alignment explanation
Indices: 3437129--3437420 Score: 293
Period size: 125 Copynumber: 2.3 Consensus size: 126
3437119 ACCAATAGGC
* * * * *
3437129 AGACTTGAGATGAGGCAATCTCCAAGGTCAAAGCTGATAGGCAGATTTGAGGTTAGGCTGTCGCC
1 AGACTTGAGATGAGGCAATCTCCAAGGTCAAAGCCGAAAGGCAAACTTGAGGTTAGGCAGTCGCC
* * * * *
3437194 AGGGTCAAAGTCGATAGACTGACTGAAGATAAGAAAGTCTCCAAGGTCAATGCCGACAGGT
66 AAGGTCAAAATCGAGAGACTGACTGAAGATAAGAAAGTCTCCAAGGGCAAAGCCGACAGGT
* * * * * *
3437255 AGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCCGAAAGGCAAACTTG-TGTTAGGCAGTCTCC
1 AGACTTGAGATGAGGCAATCTCCAAGGTCAAAGCCGAAAGGCAAACTTGAGGTTAGGCAGTCGCC
* * * * *
3437319 AAGGTCAAAATCGAGA-AGTAGACTGAAGGTAAGATAGTCT-CTAGGGCAAAAGTCGACAGGT
66 AAGGTCAAAATCGAGAGACT-GACTGAAGATAAGAAAGTCTCCAAGGGC-AAAGCCGACAGGT
* * * ** * *
3437380 AGATTTGAGATTAGGCAACCTTTAGGGTCAAAGTCGAAAGG
1 AGACTTGAGATGAGGCAATCTCCAAGGTCAAAGCCGAAAGG
3437421 GAGACTGAGG
Statistics
Matches: 134, Mismatches: 30, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
124 7 0.05
125 86 0.64
126 41 0.31
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.21
Consensus pattern (126 bp):
AGACTTGAGATGAGGCAATCTCCAAGGTCAAAGCCGAAAGGCAAACTTGAGGTTAGGCAGTCGCC
AAGGTCAAAATCGAGAGACTGACTGAAGATAAGAAAGTCTCCAAGGGCAAAGCCGACAGGT
Found at i:3437471 original size:83 final size:83
Alignment explanation
Indices: 3437270--3437471 Score: 189
Period size: 83 Copynumber: 2.4 Consensus size: 83
3437260 TGAGGTGAGG
* * * * **
3437270 TAGTCTCTAAGGTCAAAGCCGAAAGGCAAACTTGTGTTAGGCAGTCTCCAAGGTCAAAATCGAGA
1 TAGTCTCTAGGGTCAAAGCTGACAGGCAAACTTGAGTTAGGCAACCTCCAAGGTCAAAATCGAGA
*
3437335 AGTAGACTGAAGGTAAGA
66 AGGAGACTGAAGGTAAGA
* * * ** * *
3437353 TAGTCTCTAGGG-CAAAAG-TCGACAGGTAGATTTGAGATTAGGCAACCTTTAGGGTCAAAGTCG
1 TAGTCTCTAGGGTC-AAAGCT-GACAGGCAAACTTGAG-TTAGGCAACCTCCAAGGTCAAAATCG
3437416 A-AAGGGAGACTG-AGGTAAGA
63 AGAA-GGAGACTGAAGGTAAGA
*
3437436 -AGGTCTTTAGGGTCAAAGCTGACAGGCAAACTTGAG
1 TA-GTCTCTAGGGTCAAAGCTGACAGGCAAACTTGAG
3437472 GTGAGATGGT
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
82 2 0.02
83 62 0.66
84 30 0.32
ACGTcount: A:0.34, C:0.15, G:0.29, T:0.21
Consensus pattern (83 bp):
TAGTCTCTAGGGTCAAAGCTGACAGGCAAACTTGAGTTAGGCAACCTCCAAGGTCAAAATCGAGA
AGGAGACTGAAGGTAAGA
Found at i:3438525 original size:42 final size:42
Alignment explanation
Indices: 3438401--3459496 Score: 2831
Period size: 42 Copynumber: 508.5 Consensus size: 42
3438391 AGGTAGGGTT
** * * * *
3438401 AAAGTCGACAGGCAGACTTTTGGTGAGGCAGTCTATAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3438443 AAAGCCGACAGACAGACTT-AGGGTGAA--AAGGCCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGT-AAGGAA-GTCTCTAAGGTC
* * *
3438485 AAAGTCGATAGGCAGACTTTAGGTAAGGCAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3438527 AATA-TCGAGAGGCAAAC-TGAAGGTGAGAAAGTCTC-CAGCTC
1 AA-AGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * *
3438568 AAAGCCAACTA-GCAGAC-TGAAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGAC-AGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3438610 AAAGTCGATAAGCAGACATGAGG-AGAGGTAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTA-AGGAAGTCTCTAAGGTC
* * * * * *
3438652 AAAGCCGAAAAGTAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3438687 AAAG-CTGATAGGTAGATTTGAGGGTAAGAAAGTCCCTATGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * *
3438730 AAAGCCGACAAGCAGACTTGAGGTGAGGCAGTTTCCCT-A-GTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAG--TCTCTAAGGTC
* * * *
3438772 AAAG-CTGATAGGCAGACTT-AGTGTAAGAAAGTCTATAAGGTT
1 AAAGTC-GACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * ** *
3438814 AAAGTCGACAGGCAGACTTGGGGTGA-GATAGTCTCTTGGGCC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * * * * * *
3438856 GATGCCGAGAGGCAGACTATG-GGTAAGAAAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
* * * ** *
3438898 AAAGCCGATAGGTAGACTTGAGAAAAGGAAGTCTCTACGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *** *
3438940 AAAGTCGACAGGCAGAC-TAAGGGT-AGGAAAGTTTCCCGGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * * * * * *
3438982 AGAA-CCAATAGGCGGACTTGAGATAAGGCAGTCCCCAAGGTG
1 A-AAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** **
3439024 AAAG-CTGACAGGTAGACTTGAGGTTAA-GCTGTCTCTTGGGTC
1 AAAGTC-GACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
* *
3439066 AAAGTCGACAGGTAGAC-TGAAGGTAAGAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * *
3439108 AAAGTCGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * * * *
3439150 AAAGCCAAAAAGTAGACTTGTGTTGAGGCAA-TCTCTAGGGCC
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * * * *
3439192 AAAATCGACAAGCAGAC-TGAAGGTAAGAAAGTCTTTAGGGTA
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3439234 AAAG-CTACCAGGTAGATTTGAGATGAGGTAGCCT-TCAGGGTC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * *
3439276 AAAGTTGAAAGGCAGAC-TGGGGT-AGGAAAGACTC-AAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAA-GGTC
* * * * * *
3439317 AAAGTCGACAGACAGACTTAAGATGAGGTAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3439359 AAAGCCGACAGGCAAAC-TGAGTGTAAGAAAGTCTCCAAGGTT
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * *
3439401 AAAG-CTGACTGGCAAACTTAAAGT--GCAACGGTCT-TCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAA--GTCTCT-AAGGTC
** * ** *
3439443 AAAG-CTGACAGGCAGACTAAAAGTAAAAAAGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3439485 AAAGCCGACAAGTAGACTCT-AGATGACGCAGT-TTTCAGGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCT-AAGGTC
* *
3439527 AAAGTCGACAGGCAGA-TTGAGAGT-AGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * *
3439568 AAAG-CTTACAAGTAGACTTGAGATGAGGAAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3439610 AAAGCCGACAGGCAGAC-TGAGGGTAAGAAACTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* ** * * *
3439652 AAAGTCGATAGGCAGACTCAAGGTGAGGCAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * ** * *
3439694 AAAGCCGATAGGCAAACTAAAGGTAA-GAACTCTCT-AGGATT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * * * *
3439735 AGACTCGACAGGCAAACTTGAGGT---G-AG---GTAGGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3439770 AAAGCCGAAAGGTAGACTTAAAGGTAAGAAAGTCTCCAAAGTC
1 AAAGTCGACAGGCAGACTT-GAGGTAAGGAAGTCTCTAAGGTC
* * * *
3439813 AAAGTCGACAAGCAGACCTGAGGTAAGGCAGTCTC-CAGAGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAG-GTC
* * *
3439855 AAAGCCGACAGGTAGAC-TGAGGGTAAGAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3439897 AAA-ACTAATAGGTAGACTTAAGGTGAGGTAGTCTGTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
** * * * * *
3439939 AAAGTTAATAGGCAGAC-TAAGGGTATGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* ** * * * * * *
3439981 AAAGCCGATTGGTAGACTTGAGATGAGG-TG-ATCTATAGGCTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTA-AGG-TC
* * * * *
3440023 AAAGCCGATA-GAAGAC-TAAGGATAAGAAAGTCTC-AAGGGTC
1 AAAGTCGACAGGCAGACTTGAGG-TAAGGAAGTCTCTAA-GGTC
* * * * * * ** *
3440064 AAAGCCAACAGGTAGACTTGAGTTGAGGCAG-C-CATGGGGGAC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTC-T-AAGGTC
* * * * * *
3440106 AAAGCCGACAAGCAGA-TTGAGGGTAAGAAAATCTCCAATGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * *
3440148 AAAGCCGACAGGAAGTCTTGAGATCA-GACAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * * * * *
3440190 AAAGTCAAGAGGCAGAC-TGAAAGTAAGAAAGTCTGTGAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * *
3440232 AAAGCCGATAGGCAAACTTGAGGT---G-AG---GTAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3440267 AAA-ACTGATAGGTAAACTTGAGGGTAAGAAAGCCCCCAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * *
3440310 AAAGCCGACAGGTAGACTT-ATGGTGAGGCAGTCCCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* ** * *
3440352 AAAGCCGACAGATAGACTT-AGTGTAA-GAAGGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAA-GTCTCTAAGGTC
* * * * *
3440394 AAAATCGATC-GGCAAACTTGACGG-GAGGCAGTCTCCAAGGTC
1 AAAGTCGA-CAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * ** * *
3440436 AATGTTGAGAGGCAGAC-TGAATATAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * *
3440478 AAAGTCGACAGGTAGACTTGAGATGAGGTAGTCTCT-AGGTTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* *
3440520 AAAG-CTGACAGGCAGA-TTGAGGGT-AGGAAATTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * * * *
3440562 AAA-ACTAGCAGGCAGACTTAAGATGAGGCAGTCCCT-AGGATC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * *
3440604 AAAG-CTGACAGACAGACTTGAGGGT-AGGCTA-TCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * * *
3440646 AAAGCCGACAAGCAGACTGGAGGTAAGAAAGTCTCCAAGATC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3440688 AAAG-CTGACAAGCAGACTTGAGGTGAGGTAGCCT-TCAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * *
3440730 AAAGCCAAAAGGCAGACTTGAGGTGAGGAAG-------GGTA
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3440765 AAAGCCAACAGGTAGACTTGAGGGTAAGAAAGTCTCTAAGGGC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * *
3440808 AAAG-CTGACAGGCAAACTTGAGGTGAGGCAGTCTGTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3440850 AAAG-CTGATAGGCAGACTT-AGGGTAA-GAAGGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * *
3440892 AAAGTCGACAGGTAGACTT-ATGGTGAA-GTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGT-AAGGAAGTCTCTAAGGTC
** *
3440934 AAAGTCGACAGATAAACTT-AGGATAA-GAAGGTCTCT-AGAGTC
1 AAAGTCGACAGGCAGACTTGAGG-TAAGGAA-GTCTCTAAG-GTC
* * ** * * * *
3440976 AAAGCCAATTGGCAGACTTGAGGTGAGGTAGTATCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3441018 AATGCCGAGAGGCAGAC-TGAATGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3441060 AAAG-CTGATAGGTAGACTCGAGATGACGTAGTCTCTAAGTTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3441102 AAAGTTGACAAGCAGAC-TGAGGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * * * *
3441144 AAA-ACAAGCAGGCAGACTTAAGATGAGGCAGTCCCT-AGGATC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * *
3441186 AAAG-CTGATAGGCAGACTTGAGGTTAGGCTA-TCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * ** * *
3441228 AAAGGCAACAGGCAGAC-TGAAATTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * *
3441270 AAAGTCGACAAGCAGACTTGAGGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3441312 AAAGTCTAAAGGCAAACTTGAGGT---G-AG---GTAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * ** * * *
3441347 AAAGCCGATAGGTAGACTTAAGGATAAAAAAGTCCCTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
* * * * * * * *
3441390 AAAGCCAATAGGCAGACTTGAGGTGACGCAGTCTCGAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3441432 AAAG-CTGATAGGCAGACTT-AGGGTAA-GAAGGTCTAC-AGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCT-CTAAGGTC
* * * * *
3441474 AAAGTCGACAGGCAGACTTGGGGTGAGGCAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3441516 AATGTCGAGAGGTAGACTATG-GGT-AGGAAAGTCTCGAAGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAGG-AAGTCTCTAAGGTC
* * * *
3441558 AAAGCCGACAGACAGACTTGA-G-AAGGGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAA--GGAAGTCTCTAAGGTC
* * * ** * * ** *
3441600 AAAGCCGACAAGCAGAC-TAAGGGTAAAAAACTTTCTCGGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
** * * * * * *
3441642 AAAACCAATAGGCAAACTTGAGATAAGGAAGTCCCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * *
3441684 AAAG-CTGACAGGCAGACTTGAGGTTAGGCTGTCACTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3441726 AAAGTCAACAAGCAAAC-TGAAGGTAA-GAACGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAA-GTCTCTAAGGTC
* * * * *
3441768 AATGCCGACAGGCAGACTTGAGGTGAGGTAGTC-CTTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTC-TAAGGTC
* * * * * * * * *
3441810 AAAGCCGAAAGGAAAACTTGTGTTGAGGCAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3441852 ATAA-CCGACAAGCAGAC-T---G--A--AAGTCTCTAGGGTA
1 A-AAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3441886 AAAGTCGACAGGTAGATTTGAGATGAGGTAGT-TGCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCT-CTAAGGTC
* * * *
3441928 AAAGTCGAAAGGGAGAC-TGAAGT-AGAAAAGTCTC-AAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAG-GAAGTCTCTAA-GGTC
* * * * * *
3441969 AAAGTCGATAGACAGACTT-AGAATGAGGTAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * *
3442011 AAAGCCGATATGCAGAC-TGAGTGTAAGAAAGTCTCAAAGG-C
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* *
3442052 TAAAG-CTGACAAGCAGACTTAAGGTAA-GACAGTCTCTAAGGTC
1 -AAAGTC-GACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * * * * *
3442095 AAAGTTGGCAAGCAGACTTGAGGT--GTGACGGCCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAG-GA-AGTCTCTAAGGTC
* * * ** * ** *
3442137 TAAACTAG-TAGGCAGACTAAAAGTAATAAAGTCTCTAGGGTC
1 -AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3442179 AAAGCCGAGAAGTAGACTTGGGGT---G-AG--TC-AGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
** * * * * * *
3442214 AAAGTCGACAGGCAGACTCAAGATGATGCAGTTTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
3442256 AAAGTCGACAGGCAGA-TTGAGAGT-AGGAAAGTCTC-AATGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGG-AAGTCTCTAA-GGTC
*** * * * * *
3442298 AAAG-CTGACAAATAGACTTAAGATGAGGAAGTCTCCAAGGTT
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3442340 AAAG-CTGACAGGTAGA-TTGAGGATAA-AAAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
* * * *
3442381 AAAGTCAACAGGCAGACTTGAGGTGAGGCAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3442423 AAAGCCAATAGGCAGAC-TGAAGGTAAGAAAGTCTCCAAGATT
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
** * * * * * *
3442465 AAAACCGATAAGCAAACTGGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3442500 AAAGTCGATAGGTAGGCTTGAAGGTAAGAAAGTCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * *
3442543 AAA-ACTGATAAGCATACTTGAGGTAAGGCAA-TCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* ** * *
3442585 AAAGCCGACAGGCAGAC-TGAGGGTAAAAAAGTCTCCAAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3442627 AAAGCCAATAGGCAAACTTAAGGTGAGGTAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3442669 AAAGCCAATAGGCAAAC-TAAGCGCT-AGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-G-TAAGGAAGTCTCTAAGGTC
* * * * *
3442711 AAAG-CTGACTGGTAGACTTGAGATGAGGCAA---TCTACAGGCTT
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTA-AGG-TC
* * ** *
3442753 AAAGCCGACAGGCAGAATAAAGGTAAGAAAGTCTC-AAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAA-GGTC
* * * * * * * * *
3442795 AAAGCCAACATGTAGACTTGAGTTGAGGCAGCCT-TAAGGGAC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAA-GGTC
* * * * *
3442837 AAA-ACTGACAAGCAGAC-TGAGGGTAAGAAAATCTCTTAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3442879 AAAGCCAACAGGTAAACATGAGATGA-GATAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * ** * ** * **
3442921 AAAGTCGAGAGGCAGAGTAAAAGTAAAAAAATCTCCGAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3442963 AAAG-CTGACATGCAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3442998 AAAGCCGATAGGTAGACTTGAGGGTAAGAAAGTCCCCAAAGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* ** * *
3443041 AAAGCCGACAGGCAGACTT-ATGGTGTGGCAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* *
3443083 AAAG-CCAGCAGGCAGACTT-AGGGTAA-GAAGGTCT-TCAGGGTC
1 AAAGTCGA-CAGGCAGACTTGA-GGTAAGGAA-GTCTCT-AAGGTC
* * * * *
3443125 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * ** * *
3443167 AATG-CTGAGAGGCAGACTAAAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * **
3443209 AAAGCCGATAGGCAGAGTTGAGATGAGGTTGTCTCT-AGGTTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * * * * *
3443251 AAAG-CTGATAAGTAGAC-TAAGGGT-GGGAATGTCACCAAGGT-
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
** * * ** * *
3443292 AAAAACCAGCAAGCAGACTTGATATGAGGCAA-TCGCT-AGGATC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGG-TC
* * * * *
3443335 AAAG-CTGACAGGCAGGCTTGAGGTTAGGCTA-TCTCCAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * ** * *
3443377 AAAGCCAATAGGCAGACTACAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3443419 AAAGCCGACAAGCAGACTTGAGGTGAGGTAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3443461 AAAGTCGAAAGGCAGACCTGAGGTAA-G--G----TAGGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3443496 AAAGCCAATAGGTAGACTTGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * *
3443539 AAAGAT-GATAGGCAGACTTGAGGTAAGGCAGTTTCTAGGGTC
1 AAAG-TCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3443581 AAAG-CTAACAGGCAGACTTAAGGTAAGAAAGTCTTTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3443623 AAAGTCGACAGACAGACTTGAGGTGAA-GCAGTCTCCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* * * * * * * * * *
3443665 CATGCCGAGAGTCA-AATTAAGGGTAAGAAAGTTTC-AAGGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAA-GGTC
* * * * * * *
3443707 AAAGCCGACAGACAAACTTGAGATGAGGTAGTCTCTAAGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
** * * *
3443749 AAAACCAATAGGCAGAC-TGAAGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGG-AAGTCTCTAAGGTC
** * * * * * * * *
3443791 AAAACCAACAAGCAAACTTGAGATGAAGCAA-TC-CCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* * * * * * *
3443832 AAA-ACTAACAGGCAGACATAAGGTTAGGCTA-TCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * * ** *
3443874 AAAGCCGATAGCCA-AATTGAAGGTAAAAAAGTCT-TCAGG--
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * *
3443913 ---GTC-A-A---AGCCTTGAAGGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3443948 AAAGCCGACAAGCAAACTTGAAGTGAGGTACTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * * * * * *
3443990 AAAG-CTGAAAGGCAGACTTTTGTTGAGGCAGTCCCCAAGGTG
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** *
3444032 AAAGTCGATAGGCAGACAAGA-GTAAGAAAGTCTC-AAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAA-GGTC
* * * * * * * * *
3444073 AAAGCCAACAGGCAAACTTGAGATGAGGCAGTCTTTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3444115 AAAG-CTGACAAGCAGGC-TAAGGGTAAGAAAGTCTCCT-AGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCT-CTAAGGTC
* * * ** ** *
3444157 AAAGCCAAGAGGCAGA-TTAGAGGTGTGGCCGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTT-GAGGTAAGGAAGTCTCTAAGGTC
* * * *
3444199 AAAGCCGAAAGGCAGA-TTGAGTGTGAGAAAGTCT-TAA-G-C
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * *
3444238 CAA-T----AGTCAGACTTGAGCTGAGGCAGTCTCCAAGG-C
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3444274 TAAAGCCGACAGGCATA-TTGAGGGTAAGAAAGTTTCCAAGGTC
1 -AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3444317 AAAG-CTAATAAGCAAACTAGAGGTGAGGCAGTCTCCAAGATC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * ** * *
3444359 AAAG-CTGAAAGGCAGAC-TAAGGGCAAAAAAGCCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * *
3444401 AAAG-CCAGCAGACAGACTTGAGGTATA-GCAGTCTCCACGGAC
1 AAAGTCGA-CAGGCAGACTTGAGGTA-AGGAAGTCTCTAAGGTC
* * * * *
3444443 AAAG-CAAACAGGTAGAC-TAAGTGTAAGAAAATCTC-AAGGTC
1 AAAGTC-GACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * *
3444484 AAAGCCGATAGGTAGACTTGAGATGA-GACAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * * **
3444526 AAAGTCGAGAGGCA-AATTGAAGGTAAGAAAGTCT-TCGGAGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAG-GTC
* * * * *
3444568 AAAG-CCACAGACAGACTTGAAGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3444602 AAAG-CTGACCA-GTAGACTTGAGGGTAAGAAAGTCTCCAAGGTC
1 AAAGTC-GA-CAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * *
3444645 AAAG-CTAACAGGCAGA-TTTATGGTGAGGCAGTCTCCAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * *
3444687 AAAGGCGACAGACAGACTT-AGGATAA-GAATGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGG-TAAGGAA-GTCTCTAAGGTC
* ** * *
3444729 AAAGTCGATAGGTGGACTTGAGGTAAGGCAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3444771 AATA-CCGAGAGGCAGACTAT-AGGTAAGAAAGTCTAC-AAGGTC
1 AA-AGTCGACAGGCAGACT-TGAGGTAAGGAAGTCT-CTAAGGTC
* * * *
3444813 CAAG-CTGACAGGTAGA-TGTGAGATAAGGCAGTCTCT-AGGTTC
1 AAAGTC-GACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGG-TC
* *
3444855 AAAG-CTGACAGGCAGAC-TGATGGT-AGGAAAGTCACCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * * * * *
3444897 AAA-ACCAGTAGGTAGACTTGAGATGAGGCAGTCCCT-AGGATC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * *
3444939 AAA-CCTGACAGGCAGACTTGAGGTTAGGCTA-TCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * *
3444981 AAA-ACTGACAAGCAGA-TTCGAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTT-GAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3445023 AAAGCCGATAAGTAGACTTGAGGTGAGGTAGTCT-TCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * *
3445065 AAAGCCGAAAGGCAGACTTAAGGT---GAAG---C-AAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * ** * *
3445100 AAA-ACTGATAGGTAGACTTGAGGGTAATAAAGTTTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * * *
3445143 AAAGCCAACAGGTAGACTTGAGATGAGGCAGTTTCCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3445185 AGAGTTGACAGGCAGACTT-AGGGTAA-GAAGGTCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * * *
3445227 AAAGTCGACAAGCAGACGTGAGGTTAGGCAGTCTCCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3445269 AATGCCGAGAGTCA-A-ATGAGGGTAAGAAAGTCTC-AAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAA-GGTC
* * * * * * *
3445310 AAAGCCGACAAGCAAACTTGAGATGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3445352 AAAGCCGACAGGCAGACTATG-GGT-AGAAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAG-GAAGTCTCTAAGGTC
** * * * * * * *
3445394 AAAACCAATAGGCAGACTTGAGATGAGGCAGTCCCT-AGGATT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * * *
3445436 AAAG-CTAATAGGCAGACTTGAGGTTAGGCTA-TCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * * ** ** *
3445478 AAAGCCCATAGGCAAACTAAAGGTAAAAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3445520 --A----A-A-GC---CTTGAAGGTAAGAAAGTC-CTTAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTC-TAAGGTC
* * * * * * * * * *
3445552 AAAGCCAATAAGAAGACTTGAGGTGAGGTACTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * ** * *
3445594 AAAG-CTGAAAGGTAGTCTTGTGTTGAGGCGGTCTCTAGGGTG
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3445636 AAAGTCGACAGGTAGGC-TAAGAGTATGAAAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * * * * * *
3445678 AAAGCCAACAGACAGACTTAAGATGAGGCAGTTTATAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3445720 AAAG-CTGACAAGTAAAC-TAAGGGTAAGAAAGTCTCCT-AGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCT-CTAAGGTC
* * * *
3445762 AAAG-CCAGTAGGCAGACTAGAGGT--GCGACCGTCTCT-AGGATC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAG-GA-AGTCTCTAAGG-TC
* * * *
3445804 AAAGTCGAAAGGCAGAC-TGAGTGTGAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * * *
3445846 AAAGCCAACTGGTAGACTTAAGGTAAGGCAGTCTCCAAGG-C
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3445887 TAGAGCCGACAGGCATACTACG-GGTAAGAAAGTCTCCAAGCTC
1 -AAAGTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3445930 AAAGCCAACAGACAGACTAGAGGTGAGGCAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * * *
3445972 AAAGTCGAAAGGCAGAC-AAAGGGTAAGAAAGTCTCTAGGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3446014 AAAG-CCATAAGCAGACTTGAGATAAGGCAGTCTCCACGGCC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * ** *
3446055 AAAGTTGACAGGCAGAC-TGAGGAAAAAAAATCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3446096 AAAG-CTGATAGGTAGACTTGAGGTGA-GATAGCCTCCATGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * * *
3446138 AAGGCCGAAAGGCAGAC-TGAAGGTAA-GAATGTCT-TCAGGATC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAA-GTCTCTAAGG-TC
* * * *
3446180 AAAGCCGATAGGCAGACTT-AGGGTAA-G--G----TAGGGTA
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * ***
3446215 AAAG-CTGACAGGTAGACTTGAGGGTAAGAAAGTCTCCGGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
** * * * * * * * *
3446258 AAAACCAACAGGTAGGCTTAAGGTGAGGTAGTCTCCAAGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3446300 AAAG-CTGATAGACCGACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * *
3446342 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3446384 AATGCCGAGAGGCTGA-TTAAAGGT-AGGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTT-GAGGTAAGG-AAGTCTCTAAGGTC
* * * * * * *
3446426 AAAGTTGACAAGCAGATTTAAGATGAGGTAGTCTCT-AGGTTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * * ** * * *
3446468 AAAG-CTAACAAGTAGAC-TAAGGGTTTGAAAGCCGAC-AAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTC-TCTAAGGTC
* * * *
3446510 AAAGTCGACAGGTAGGCAT-AGGGTAA-GAAGGTCTAC-AAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCT-CTAAGGTC
* * * *
3446552 AAAGTCGACTA-GTAGATTTGAAGCGT--GGCAGTCTCCAAGGTC
1 AAAGTCGAC-AGGCAGACTTG-AG-GTAAGGAAGTCTCTAAGGTC
* * ** *
3446594 AATGTCGAGAGGCAGACTATG-GGTAAAAAAGTCTTTAAGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3446636 AAAATTGACAAGCAAACTTGA-GAAGAGGTAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTA-AGGAAGTCTCTAAGGTC
* ** * *
3446678 AAAG-CTGATAAACAGA-TTGAGGGT-AGGAAAGTTTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * * * *
3446720 AAAACCAATACGCAAACTTGAGATGAGGTAA-TCCCTAAGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * *
3446762 AAAG-CTACCAGGTAGACTTGAGGTTAGGTTA-TCTCT-AGAGTC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGG-AAGTCTCTAAG-GTC
* * *
3446804 AAAGTCGACATGTAGAC-TGAAGGTAAGAAAGTCTCT-AGGCTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGG-TC
* * * * * * *
3446846 AAAGCCGACAAGCAAACTTGAAGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3446888 AAAGCCGAAAGGCAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3446923 AAAG-CTGACAGGGTA-ACATGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTC-GACA-GGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3446966 AAAGTTGACAAGCAGACTTAAGGTGAGGCAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3447008 AAAGAT-GATAGGAAAACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAG-TCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * ** * *
3447050 AAAGTCGATAGGCAGACTTGCGGTGTGGCAGTCT-TCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * * * * *
3447092 AATGCCAAGAGTCAAAC-TAAGGGTAAGAAAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * ** * *
3447134 AAACTCGATAGGTAGAGTTGACATAAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3447176 AAAGCCGACAAGCAGGC-TAAGGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * *
3447218 AAAACCAACAGGCAGACTTGAGATAAGGCAGTC-CGCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTC-TAAGGTC
* * * *
3447260 AAAG-CTGACAAGCAGACTTGAGGTTAA-G--CTTTTTGAAGG--
1 AAAGTC-GACAGGCAGACTTGAGG-TAAGGAAGTCTCT-AAGGTC
*
3447299 ---GTC-A-A---AG-CTTTGAAGGTAAGGAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGAC-TTG-AGGTAAGGAAGTCTCTAAGGTC
* * ** * * *
3447334 AAAGCCGACAGACAGACTTGAGGTGTGGTACTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3447376 AAAG-CTGAAAGGTACACTTGTGTTGAGGCAGTCTCCAACGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3447418 AAGGTTGATAGGTAGAC-TGAAAGT-AGGAAAGTCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGG-AAGTCTCTAAGGTC
* * * * * * * *
3447460 AAAGCCAATAGGTAGACTTGAGATGAGGCAGTCTCT-AGGATT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * *
3447502 AAAGTCGACAGGCAGAC-TAAGGGTAAGAAAGTCTC-ACAAGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTA-AGGTC
* * ** * * * *
3447544 AAAGCCGATAGGCCTACTAGAGGT-ACGACCA-TCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA--AGTCTCTAAGGTC
* * * *
3447586 AAAGTCGAAAGGCAGA-TTGAGTGTGAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3447628 AAAGCCAACAAGTAGACTTGAGGTTAGGCAGTCTCCAAGGCC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3447670 AAAGTCGACAAGCATA-TTGAGGGTAAGAAAATCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3447712 AAAGCCAATAGGCAGAGTAGAGGTGAGGGAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3447754 AAAG-CTGATAGCCAAACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * *
3447796 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-AGAGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAG-GTC
* * * * * *
3447838 AATGCCGAGAGGCTGA-TTAAAGGT-AGGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTT-GAGGTAAGG-AAGTCTCTAAGGTC
* * * * * *
3447880 AAAGTTGACAAGCAGATTTGAGATGAGGTAGTCTCT-AGGTTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * ** * * *
3447922 AAAG-CTAACAGGTAGAC-TAAGGGTTTGAAAGCCGACT-AGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTC-TCTAAGGTC
* * * *
3447964 AAAGTCGACAGGTAGGCGT-AGGGTAA-GAAGGTCTAC-AAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCT-CTAAGGTC
* * * *
3448006 AAAGTCGACAAGTAGATTTGAAGCGT--GGCAA-TCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTG-AG-GTAAGG-AAGTCTCTAAGGTC
* * ** *
3448048 AATGTCGAGAGGCAGACTATG-GGTAAAAAAGTCTTTAAGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3448090 AAAATTGACAAGCAAACTTGA-GAAGAGGTAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTA-AGGAAGTCTCTAAGGTC
* ** * * *
3448132 AAAG-CTGATAAACA-AATTGAGGGT-AGGAAAGTTTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * * * *
3448174 AAAACCAATACGCAAACTTGAGATGAGGTAA-TCCCTAAGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * *
3448216 AAAG-CTACTAGGCAGACTTGAGGTTAGGTTA-TCTCT-AGAGTC
1 AAAGTCGAC-AGGCAGACTTGAGGTAAGG-AAGTCTCTAAG-GTC
* * * *
3448258 AAAGTCGGCATGTAGAC-TGAAGGTAAGAAAGTCTCT-AGGCTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGG-TC
* * * * * * *
3448300 AAAGCCGACAAGCAAACTTGAAGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3448342 AAAGCCGAAAGGCAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3448377 AAAG-CTGACAGGTA-ACATGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3448419 AAAGTTGACAAGCAGACTTAAGGTGAGGCAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3448461 AAAGAT-GATAGGCAAACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAG-TCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * *
3448503 AAAGTCGATAGGCAGACTTGCGGTGAGGCAGTCT-TCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * * * * *
3448545 AATGCCAAGAGTCAAAC-TAAGGGTAAGAAAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * ** * *
3448587 AAACTCGATAGGTAGAGTTGACATAAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3448629 AAAGCCGACAAGCAGGC-TAAGGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * *
3448671 AAAACCAACAGGCAGACTTGAGATAAGGCAGTC-CGCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTC-TAAGGTC
* * * *
3448713 AAAG-CTGACAAGCAGACTTGAGGTTAA-G--CTTTTTGAAGG--
1 AAAGTC-GACAGGCAGACTTGAGG-TAAGGAAGTCTCT-AAGGTC
*
3448752 ---GTC-A-A---AG-CTTTGAAGGTAAGGAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGAC-TTG-AGGTAAGGAAGTCTCTAAGGTC
* * * ** * * *
3448787 AAAGCCGACAGACAAACTTGAGGTGTGGTACTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3448829 AAAG-CTGAAAGGTACACTTGTGTTGAGGCAGTCTCCAACGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3448871 AAGGTTGACAGGTAGAC-TGAAAGT-AGGAAAGTCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGG-AAGTCTCTAAGGTC
* * * * * * * *
3448913 AAAGCCAATAGGTAGACTTGAGATGAGGCAGTCTCT-AGGATT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * *
3448955 AAAGTCGACAGGCAGAC-TAAGGGTAAGAAAGTCTC-ACAAGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTA-AGGTC
* * ** * * *
3448997 AAAGCCGATAGGCCTACTAGAGGT-ACGACCA-TCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA--AGTCTCTAAGGTC
* * * * *
3449039 AAAGTCGAAAGGCAGAC-TAAGTGTGAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3449081 AAAGCCAACAAGTAGACTTGAGGTTAGGCAGTCTCCAAGGCC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3449123 AAAGTCGACAAGCATA-TTGAGGGTAAGAAAATCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3449165 AAAGCCAATAGGCAGAGTAGAGGTGAGGGAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3449207 AAAG-CTGATAGCCAAACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * *
3449249 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCT-AGAGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAG-GTC
* * * * * *
3449291 AATGCCGAGAGGCTGA-TTAAAGGT-AGGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTT-GAGGTAAGG-AAGTCTCTAAGGTC
* * * * * *
3449333 AAAGTTGACAAGCAGATTTGAGATGAGGTAGTCTCT-AGGTTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * * ** * * *
3449375 AAAG-CTAACTGGTAGAC-TAAGGGTTTGAAAGCCGACT-AGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTC-TCTAAGGTC
* * * *
3449417 AAAGTCGACAGGTAGGCGT-AGGGTAA-GAAGGTCTAC-AAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCT-CTAAGGTC
* * * * *
3449459 AAAGTCGACAAGTAGATTTGAAGCGT--GGCAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTG-AG-GTAAGGAAGTCTCTAAGGTC
* * ** *
3449501 AATGTCGAGAGGCAGACTATG-GGTAAAAAAGTCTTTAAGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3449543 AAAATTGACAAGCAAACTTGA-GAAGAGGTAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTA-AGGAAGTCTCTAAGGTC
* ** * *
3449585 AAAG-CTGATAAACAGA-TTGAGGGT-AGGAAAGTTTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * * * *
3449627 AAAACCAATACGCAAACTTGAGATGAGGTAA-TCCCTAAGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * *
3449669 AAAG-CTACCAGGCAGACTTGAGGTTAGGTTA-TCTCT-AGAGTC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGG-AAGTCTCTAAG-GTC
* * * *
3449711 AAAGTCGGCATGTAGAC-TGAAGGTAAGAAAGTCTCT-AGGCTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGG-TC
* * * * * * *
3449753 AAAGCCGACAAGCAAACTTGAAGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3449795 AAAGCCGAAAGGCAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3449830 AAAG-CTGACAGGGTA-ACATGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTC-GACA-GGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3449873 AAAGTTGACAAGCAGACTTAAGGTGAGGTAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3449915 AAAGAT-GATAGGCAAACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAG-TCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * *
3449957 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCT-TCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * * ** * *
3449999 AATGCCAAGAGTCAAAC-TAAGGGTAAAAAAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * ** * *
3450041 AAACTCGATAGGTAGAGTTGACATAAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3450083 AAAGCCGACAAGCAGGC-TAAGGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * *
3450125 AAAACCAACAGGCAGACTTGAGATAAGGCAGTC-CGCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTC-TAAGGTC
* * * *
3450167 AAAG-CTGACAAGCAGACTTGAGGT---TAAG-CT-T---TTT
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * ** *
3450201 AAAG-GGTTA--AAGCTTTGAAGGTAAGGAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * ** * *
3450241 AAAGCCGACAGACAGACTTGAGGTGGGGTACTCTCCT-AGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCT-CTAAGGTC
* * * * * * * * *
3450283 AAAG-CTGAAAGGTACACTTGTGTTGAGGCAGTCTCCAATGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3450325 AAGGTTGAAAGGTAGAC-TGAAAGT-AGGAAAGTCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGG-AAGTCTCTAAGGTC
* * * * * * * * *
3450367 AAAGCCAATAGGTAGACTTGAGATGAGGCAGTCTCTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3450409 AAAGTCGACAGGCAGAC-TAAGGGTAAGAAAGTCTC-ACAAGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTA-AGGTC
* * ** * * * *
3450451 AAAGCCGATAGGCCTACTAGAGGT-ACGACCA-TCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA--AGTCTCTAAGGTC
* * * *
3450493 AAAGTCGAAAGGCAGAC-TGAGTGTGAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * * *
3450535 AAAG-CTAACAAGTAGACTTGAGGTTAGGCAGTCTCCAAGGCC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3450577 AAAGTCGACAAGCATA-TTGAGGGTAAGAAAATCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3450619 AAAGCCAATAGGCAGAGTAGAGGTGAGGGAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3450661 AAAG-CTGATA-GCTAAACTT-AGGGTAA-GATGGTCTCCAAGGTC
1 AAAGTC-GACAGGC-AGACTTGA-GGTAAGGA-AGTCTCTAAGGTC
* * * *
3450703 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * ** * *
3450745 AATGCCGAGAGGTTGA-TTAAAGGT-AGGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTT-GAGGTAAGG-AAGTCTCTAAGGTC
* * * * * * *
3450787 AAAGTTGACAAGCAGATTTGAGATGAGGTAGTCT-TTAGGTTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * ** * *
3450829 AAAG-CTAACAGGTAGAC-TAAGGGTTTGAAAGTCGAC-AAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTC-TCTAAGGTC
* * * * *
3450871 AAAGTTGACAGGTAGGCAT-AGGGTAA-GAAGGTCTAC-AAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCT-CTAAGGTC
* * * *
3450913 AAAGTCGACTA-GTAGATTTGAAGCGT--GGCAGTCTCCAAGGTC
1 AAAGTCGAC-AGGCAGACTTG-AG-GTAAGGAAGTCTCTAAGGTC
* * ** *
3450955 AATGTCGAGAGGCAGACTATG-GGTAAAAAAGTCTTTAAGGTC
1 AAAGTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3450997 AAAATTGACAAGCAAACTTGA-GAAGAGGTAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTA-AGGAAGTCTCTAAGGTC
* ** * *
3451039 AAAG-CTGATAAACAGA-TTGAGGGT-AGGAAAGTTTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * * * *
3451081 AAAACCAATACGCAAACTTGAGATGAGGTAA-TCCCTAAGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * *
3451123 AAAG-CTACCAGGCAGACTTGAGGTTAGGTTA-TCTCT-AGAGTC
1 AAAGTCGA-CAGGCAGACTTGAGGTAAGG-AAGTCTCTAAG-GTC
* * *
3451165 AAAGTC-AGCATGTAGAC-TGAAGGTAAGAAAGTCTCT-AGGCTC
1 AAAGTCGA-CAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGG-TC
* * * * * * *
3451207 AAAGCCGACAAGCAAACTTGAAGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3451249 AAAGCCGAAAGGCAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3451284 AAAG-CTGACAGGTA-ACATGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3451326 AAAGTTGACAAGCAGACTTAAGGTGAGGCAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3451368 AAAGAT-GATAGGCAAACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAG-TCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * *
3451410 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGCCT-TCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * * * * *
3451452 AATGCCAAGAGTCAAAC-TAAGGGTAAGAAAGTCTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * ** * *
3451494 AAACTCGATAGGTAGAGTTGACATAAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3451536 AAAGCCGATAAGCAGGC-TAAGGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* ** ** * *
3451578 AAAGCCGACAAACAGACTTGAGGTGGGGTACTCT-TCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * * * *
3451620 AAAG-CTGAAAGGTACACTTGTGTTGAGGCAGTCTCCAACGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3451662 AAGGTTGACAGGTAGAC-TGAAAGT-AGGAAAGTCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGG-AAGTCTCTAAGGTC
* * * * ** * * * *
3451704 AAAGCCAATAGGTAGACTTGAAATGAGGCAGTCTCTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3451746 AAAGTCGACAGGCAGAC-TAAGGGTAAGAAAGTCTC-ACAAGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTA-AGGTC
* * * ** * * *
3451788 AAAGCCGATATGCCTACTAGAGGT-ACGACCA-TCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA--AGTCTCTAAGGTC
* * * *
3451830 AAAGTCGAAAGGCAGAC-TGAGTGTGAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3451872 AAAGCCAACAAGTAGACTTGAGGTTAGGCAGTCTCCAAGGCC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3451914 AAAGTCGACAAGCATA-TTGAGGGTAAGAAAATCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3451956 AAAGCCAATAGGCAGACTAGAGGTGAGGGAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3451998 AAAG-CTGATAGCCAAACTT-AGGGTAA-GAAGGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * *
3452040 AAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCT-TCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * * * *
3452082 AATGCCGAGAGTCAAAC-TAAGGGTAAGAAAGTGTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
** * * * ** * * *
3452124 AAACCCGATAGGTAGAGTTGACATGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3452166 AAAGCCGACAAGCAGAC-TAAGGGT-AGGAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * * * * *
3452208 AAAACCAACAAGCAGACTTGAGATGAGGCAGTC-CGCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTC-TAAGGTC
* ** * * * * *
3452250 AAAGTTGACAAACAAACTTGAGGTTAGG--CTTTTTGAAGG--
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* *
3452289 ---GTC-A-A---AG-CTTTGAAGGTAAAGAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGAC-TTG-AGGTAAGGAAGTCTCTAAGGTC
* * * ** * * *
3452324 AAAGCCGATAGACAGACTTGAGGTGGGGTACTCTCTAAGGGC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3452366 AAAG-CTGAAAGGTACACTTGTGTTGAGGCAGTCTCCAACGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3452408 AAGGTTGACAGGTAGAC-TGAAAGT-AGGAAAGTCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGG-AAGTCTCTAAGGTC
* * * * * * * * *
3452450 AAAGCCAATAGGCAGACTTGTGATGAGGCAGTCTCTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3452492 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCTCCTAA-GTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCT-CTAAGGTC
* * ** * * * *
3452534 AAAGCCGATAGGCCTACTAGAGGT-ACGACCA-TCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA--AGTCTCTAAGGTC
* * * *
3452576 AAAGTCGAAAGGCAGAC-TGAGTGTGAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * *
3452618 AAAGCCAACAGCCAGACTTGAGGTTAGGCAA-TCTCCAAGGCC
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * *
3452660 AAAGTCGACAAGCATA-TTGAGGGTAAGAAAATCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3452702 AAAGCCAATAGGCAGACTAGAGGTGAGGGAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ***
3452744 AAAG-CTGAAAGGCAGA-AAAAGGGT-AGGAAAGTCTCTAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
** * * * * *
3452786 AAAACCAACAGGCAGACTTGAGGTGAGGCAGTCTCTACGGAC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
** ** * ** * * *
3452828 AAAACCGATTGGCAAAC-TGAGGGTAAAAAAATCTCAAAGGCC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * *
3452870 AAAG-CTGACAGGTAGACTTGAGATGA-GATAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * * * **
3452912 AAAGTTGAGAGGCAGAC-TGAAGGTAAGAAAGTCTTTGGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * *
3452954 AAAGCCAACAGGCAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
** * * ** * * *
3452989 AAAACCGACAAGTAGACTTGAGGGTAAAAAAATCTCCAAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3453032 AAAGCCAATAAGCAGA-TTTATGGTGAGGCAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* ** * * *
3453074 AAAGCCGACAGATAGACTT-AGGGTAA-GAAGATCTTTAGGGCC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAG-TCTCTAAGGTC
* *
3453116 AAAGTCGATC-GACAGACATGAGG-ACAGGCAA-TCTCCT-AGGTC
1 AAAGTCGA-CAGGCAGACTTGAGGTA-AGG-AAGTCT-CTAAGGTC
* * * ** * ** *
3453158 AATG-CTGAGAGGCTGACTAAAGGTAAGAAAGTCTCCCACGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * ** ** * *
3453200 AAAGCCAATAGGCAGACTAGAGGTGCGTCTA-TCTCTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAG-GAAGTCTCTAAGGTC
* * ** * *
3453242 AAAGTCAATAGGCAGACTAAAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * **
3453284 AAAGTCAACAAGCAGACTTAAGGTGAA-GTAGTCCCTTGGGTC
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* * * *
3453326 AAAG-CTGATAAGCAGAC-TGAGGGTAA-AAATGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * * *
3453368 AAAGCCGGCAGGCAGAGTTGAGGTAAGGCAGT-TTTGAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * *
3453410 CAAG-CTGAGAGGCAAAC-TAAGGGTAAGAAATTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3453452 AAAG-CAAATAGGCAAACTTGAGATGAGGTAGTCTCCAAGGTT
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3453494 AAAGTCGACTGGC-GAAC-TGAGGGTAAGAAAGTCTCT-AGTGTC
1 AAAGTCGACAGGCAG-ACTTGA-GGTAAGGAAGTCTCTAAG-GTC
* * * *
3453536 AAAG-CAACAGGCAGACTGGAGGTAA-GAAGGT-TTTTAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAA-GTCTCTAAGGTC
* * * * *
3453576 AAAG-CTAATAGGCAGACTCT-AGGTAAGGTATTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3453618 AAAGCCGACACGCAGACTTGAGATGAGGCAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3453660 AAAG-CTGATAGGTAGA-TTGAGGGT-AGGAAAGTCTTTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * * *
3453702 AAAGTCGACATGCAGACTTAAGATGAGGTAGTCTATAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3453744 AAAGCCGACAGACAGA-TTAAGGGTAAGAAAGTTTCTAAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * ** * **
3453786 AAAG-CTGAGAAGTAGACTTGAGGGGAGGTAGTCTCTACTGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3453828 AAAGCCGACAGACAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * *
3453863 AAAGGT-GACAGGCATACTCAAAGGTAAGAAAGTCTCCAAGGTC
1 AAA-GTCGACAGGCAGACT-TGAGGTAAGGAAGTCTCTAAGGTC
** * * * *
3453906 AAAGAAGATAGGCACACTTGAGGTGAGGCAA-TCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * **
3453948 AAAGTTGATAGGCAGAC-TAAGGGTAAAAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * *
3453990 AAAGTCGATAAGCGGACTTGAGGTGAA-GCAG-CTTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTC-TCTAAGGTC
* * * * * *
3454032 AGAGTCGATAGGCAGACTTGAGGTGAGGTAGT-TTTGAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * *
3454074 AAAGGT-GACAGGCAGAC-TAATGGTAAGAAAGTCTCCAAGGTT
1 AAA-GTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3454116 AAAGCCAATAGGTATACTTGA-GAAGAGGCAA-TCTTTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTA-AGG-AAGTCTCTAAGGTC
* * * * * * * * *
3454158 AAAGTTGACAAGTAGAATGGGGGTAAGAAAGTTTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3454200 AAAGCCAACAGGCAGACTTGAAGTGAGGCAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3454242 AAATTCGAGAAGCAGAC-TGAGGGTAAGAAAGTCTCCATGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * *
3454284 AAAG-CTGACAAGCAGACTTGAGGTGAGGAAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * *
3454326 AAAGTCGACACGCAGACTAAAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3454368 AAAGCCCACAAGCAGACTCGAGGT---G-AG---GTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3454403 AAAGCCGCCAAG-ATGACTAGAAGGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCA-GACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * *
3454446 AAAGTCGATAGGCAGAC-TGAGGGTAAGAAAGTCTCCAGGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * *
3454488 AAATTCGACCGGTAGACTTGAGGTGAAGG-AGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* * *
3454530 AAAATTGACAAGCAGAC-TGAAGGTAA-GAATGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAA-GTCTCTAAGGTC
* * * * * * *
3454572 AAGGACGAAAGGCAGAATTGAGGTGAGGTAGTCT-TGAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * *
3454614 AAAGCCGAGAGGCAAAC-TAAGGTTAAGAAAGTCTCCAAGGTG
1 AAAGTCGACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
** * * * * * * * *
3454656 AAAACCAATAGGCAAACTTGAGATGAGGTAGTCT-TCAACGTTTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AA-G-GTC
* * * * * *
3454700 AAAG-CAAATAAGAAGACAT-AGGGTAA-GAATGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * *
3454742 AAAGCCGACAGGCAGACTTGAGGTTATGTAA-TCTCCAAGTTC
1 AAAGTCGACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
* * * ** * *
3454784 AAAG-CAGATAGGTAAACTAAAGGTAAGAAAATCTCTAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3454826 AAAGTCAACAGGCAGACTTGAGATGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3454868 CAAGCCGACACGCAAACTTGAGATGAGGCAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3454910 ACAGCCGACAGGCAGAC-TGAGGGTAA-AAATGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * * * * * *
3454952 AAAGCCGTCATGCAGACTTAAGATAAGGCAGTTTCCAAGATC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3454994 AAAGCCGACAGGCAAAC-TGAAGGTGAA--AAATCTCTAAAGTT
1 AAAGTCGACAGGCAGACTTG-AGGT-AAGGAAGTCTCTAAGGTC
* * * ** ** ** *
3455035 AAAGTTGACAAGCAGGCTTGAGGGGAGGTTGTCTCTACCGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3455077 AAAGTCGATAGGTAGACTTGAGGT---G-AG--GC-AGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3455112 AAAGCCGACAGGCAGAC-TAAGAGTAAGAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * ** * * * * * *
3455154 AAAGCCAATAGGCAGACAAGAGATGAGGTAGT-TTTCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * *
3455196 AAA-CCTGACAAGCAAAC-TAAGGTTAAGAAAGTTTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
* ** * * * *
3455238 AAAGCCGGTAGGCAGACTTG-GAGTGAGGCAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * * * *
3455280 AAAGTCGAGAAGTAGAC-TGAGGGTAAGAAAGTCTCCATGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * ** * * *
3455322 AAAG-CTAACATGTAGACTTGAGGTGTGGAAGTCACCAAAGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3455364 AAAGTCGACAGGCAGAC-AGAAAGTATGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3455406 AAAGCCGATAGGCAGACTCGAGGT---G-AG--GC-AGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * *
3455441 AAA-TCCAGCAGG-ATGACTAAAAGGTAAGAAAAGTCTCTAGGGTC
1 AAAGTCGA-CAGGCA-GACT-TGAGGTAAG-GAAGTCTCTAAGGTC
* * *
3455485 AAAGTCGATAGGCAGA-TTGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * *
3455527 AAAGTCGACCGGTAGACTTAAGGTGAA-GTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* * * *
3455569 AAAGTCGATAGGCAGAC-TGAGGGTAA-AAATGTCTCTAGGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
** * * ** *
3455611 AAAACCGACAGGCAGAGTTGAGGTGAGGCTGTCT-TGAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * * *
3455653 AAAGCCGAGAGGTAAAC-TAAGGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3455695 AAAGCCAATAGGCAAACTTGAGATAAGGTAGCCT-TCAAGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * *
3455737 AAAGCCAACAAGTAGGCAT-AGGGTAA-GAATGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * *
3455779 AAAGCCGACAGGCAGACTTGAGGTTA-GATAGTCTCCATGTTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* *
3455821 AAAGTCGATAGGCAGAC-TGAAGGTAA-GAACGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAA-GTCTCTAAGGTC
* * * *
3455863 AAAGTCGATAGGCAGACTTGAGGTGAGGTACTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * ** * * * * * *
3455905 CAAGCCGACACACAGACTTGAGATGAGGCAGTCTATAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3455947 AAAGCCAACAAGCAGAC-AGAGGGT-AGAAAAGTCTTTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAG-GAAGTCTCTAAGGTC
** * * * * * * *
3455989 AAAGTTTACATGCAAACTTAAGATGAGGCAGTCTATAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * **
3456031 AAAGCCAACAGGCAAAC-TAAGTGTAAAAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAAGGTC
* * * ** ** *
3456073 AAAGTTGACAAGCAAACTTGAGGGGAGGTTGTCTCTACGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3456115 AAAGCCGACAGGTAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3456150 AAAGCCGACAGGCAGACTTGAGGTGAGGTAGTCT-TGAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * *
3456192 AAAGCCGACAGGCAGAC-TAAGGGTAAGAAAGTCCCCAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3456234 AAAGCCAAAAGGCAGACTTGAGATAAGGTAGACT-TCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
** * * *
3456276 AAAG-CTGACATACAGAC-TGAGGGTAA-AAATGTTTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * * * *
3456318 AAAGCCGATAGGCAGACTTGAAGTGAGGTAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3456360 AAAGTCGAGAAGTAGAC-TAAGGGTAAGAAAGTCTCCATGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * *
3456402 AAAG-CTGACAAGCAGACTTAAGTTGAGGAAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3456444 AAAGTCGATAGGCAGAC-TGAAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3456486 AAAGCCGATAGGCAAACTTGAGGT---G-AG---GTAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3456521 AAAGCCGGCAGG-ATGACTAGCAAGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCA-GACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * ** * *
3456564 AAAGTCGATAAGTAGAC-TAAGGGTAAAAAAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * *
3456606 AAAGTCGA-TGGATAGACTCGAGGTGAA-GTAGTCTCTAGGGTC
1 AAAGTCGACAGG-CAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* * * *
3456648 AAAG-CTGATAGGCAGA-ATGAGGGTAA-GAATGTCTCCAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * * * * *
3456690 AAAG-CTGACAGGCAGAGTTGATGTGAGGTAGTCT-TGAGGGTT
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * *
3456732 AAAGCCGAGAGGCAAAC-TAAGGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * * *
3456774 AAAGCCAATAGGCAAACTTGAGATAAGGTAGTAT-TCAGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * ** * * *
3456816 AAAGCCAACAAGCAGAC-ACAGGGTAAGAATAG-CTTTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGA-AGTCTCTAAGGTC
* * * * * * *
3456858 AAAGTCGATAGGCAAACTTGAGGTTAGGTAGTGTC-CAGGTTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGG-TC
* * * *
3456900 AAAG-CTGATAGGCAGA-TTGAAGGTAAGAAAATCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3456942 AAAGTCGACATGCAAACTTGAAGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3456984 TAAGCCGACACGCAGACTTGAGATGAGGCAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3457026 AAAG-CTA-ATTGGCAGA-ATGAGGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACA--GGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * ** *
3457068 AAAG-CTGACATGCAGACTTAAGATGAGGCTGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3457110 AAAG-CTGACAGGCAAAC-TGAGGGTAAGAAAGTCTCTAAGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * **
3457152 AAAGTTGGCAAGCAGACTTGAGG-AGAGGTTGTCTCTACA-GTC
1 AAAGTCGACAGGCAGACTTGAGGTA-AGGAAGTCTCTA-AGGTC
* * * *
3457194 AAAGCCGACTA-GTAGACTTGAGGT--GG--G--GC-AGGGTC
1 AAAGTCGAC-AGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3457229 AAAGCCGACAAGCAGAGTTGAAAGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * *
3457272 AAAG-CAAATAGGCACACTTGAGGTGAGGCAA-TCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * *
3457314 AAAGTCGACAAGCAGAC-TAAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * *
3457356 AAAGTCGACAAGCAAACTTGAGGTGAA-GTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* * * * * * * * *
3457398 AAAGCCAAAAGACAAACTTGAGGTGAGGCAGT-TTTGAAGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
** * * *
3457440 AAAG-CTGGTAGGCAGAC-TAAGCGTAAGAAAGTCT-TAAAGGTT
1 AAAGTC-GACAGGCAGACTTGAG-GTAAGGAAGTCTCT-AAGGTC
* * * * * * * *
3457482 AAAGCCAATAGGCAGACTTAAGATAAAGCAA-TCT-TCATGGTT
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCT-AAGGTC
* * * * *
3457524 AAAGCCGACAAGCAGA-TTGAGGGTAAGAAAGTTTCGAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * *
3457566 AAAGCCAACAGGCAGACTTGAAGTGA-GACACTCTCTTAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGA-AGTCTCTAAGGTC
* * * * *
3457608 AAAGCCGACAAGCAGAC-TCAGCCTAAGAAAGTCTC-AATGGTC
1 AAAGTCGACAGGCAGACTTGAG-GTAAGGAAGTCTCTAA-GGTC
* * * *
3457650 AAAG-CTGACACGCAAACTTGAGGTGAGGAAGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * ** * *
3457692 AAAATCGATAGGCAGGCTAAAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3457734 AAAGTTGACAGGCAAACTTGAGGTAA-G--G---C-AGGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *** * **
3457769 AAAGCCGACAAGTTCACTTAAAGGTAAAAAAGTCTC-AAGGGTC
1 AAAGTCGACAGGCAGACTT-GAGGTAAGGAAGTCTCTAA-GGTC
* * * *
3457812 AAAGTCGATAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* ** * *
3457854 AAAG-CTGACCA-GCAAACTAAAGGTAAGAAAGCCT-TCAAGGTC
1 AAAGTC-GA-CAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * *
3457896 AAAG-CTGATAGGTAGACTTGAGATGAGGTAGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3457938 AAAG-CTGACAGG-TGCAC-CGAGGGT-TGGAAAGTTTCT-AGAGTC
1 AAAGTC-GACAGGCAG-ACTTGA-GGTAAGG-AAGTCTCTAAG-GTC
* * * * * *
3457980 AAAGCCGACGGGCAGACTTGAGATGAGGCAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3458022 AAAGCCGACTGGCAGAC-TGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
*** * *
3458064 AAAG-CTGA-ATATAGACTTGAGGTTAA-GCAGTCTCCAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
* * * * * * * * * *
3458105 -AAGGCTGATAAGTAGAC-TGAAAGTGAGAAAGTTTCTAGGGTT
1 AAAGTC-GACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3458147 AAAG-CTGATAGGCGGACTTGAGGTGAGGTAGCCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3458189 AAAGCCAACAGGCAAACTTGAGATAAGGTAGTCTCCATGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * *
3458231 AAAGTCAACAGGCAGA-GTGAGGGT-AGGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGG-AAGTCTCTAAGGTC
* * * * * * *
3458273 AAAGCCAATAGGCAGACTTAAGATGAGGTAGTCTCT-AGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * ** *
3458314 AAAGCCGATAGGTAGAC-TAAGGGTAAAAAAAGTCTCTAAAGTC
1 AAAGTCGACAGGCAGACTTGA-GGT-AAGGAAGTCTCTAAGGTC
* * * * *
3458357 AAAG-CTGA-TGGCAGACTTGATGG-GAGGCAGTCTTTACGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * *
3458398 AAAGCCGACAGGCAGACTTAAGGTGAGGCAG-----AA--TC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
** * * * * * * *
3458433 AAAACCAATAAGTAGTCTTGAAGGTAAGAAAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * * *
3458476 AAAGCCAATAGGCACACTTGAGGTAAGTCAA-TCTCTAGGGTG
1 AAAGTCGACAGGCAGACTTGAGGTAAG-GAAGTCTCTAAGGTC
* * * * *
3458518 AAAGTTGACAGGCAAAC-TGAGGGTAAGAAAGTTTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
** * * *
3458560 AAAGTCGACAGTAAGACTTGAGCTGAA-GTAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGT-AAGGAAGTCTCTAAGGTC
* *
3458602 AAAGTCGATTA-GCAGAC-TGAGGGTAAGAAAGTCTCTAAGGTC
1 AAAGTCGA-CAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3458644 AAAG-CTGACAAGCAAACTTGAGATGAGGCAGACTCTAGGGAC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * **
3458686 GAAG-CTGACGGGCAGAC-TAAGG-ATAGGAAAGTCTCTATTGTC
1 AAAGTC-GACAGGCAGACTTGAGGTA-AGG-AAGTCTCTAAGGTC
* * * *
3458728 AAAG-CTGATAGGCAAACTTGAGGTAAGGTAGTCT-TGAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * * * * *
3458770 AAAGTCAATAGGTAGGC-TGAGGGTAAGAAAGTCT-TCAAGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCT-AAGGTC
* * * * * * * *
3458812 AAAGCCAACAGGTAGACTCGAGATGAGGTAGTCTCCAAGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3458854 AAAGTCGAGAGGCAGAC-TGAGGATAAGAAAGTTTCCAATGTC
1 AAAGTCGACAGGCAGACTTGAGG-TAAGGAAGTCTCTAAGGTC
* * * * * * *
3458896 AAAGCCAATAGGCAAACTTGAGGTGAGGTAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3458938 AAAGTTGACAAGCAGA-TTGAGGGTAA-GAAGGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAA-GTCTCTAAGGTC
* * *
3458980 AAAG-CTGACCGGCATACTTAAGGTAAGGCAA-TCTCTAAGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGG-AAGTCTCTAAGGTC
* * * * * *
3459022 ATAGTCGACTGGAAGA-TTGATGGTAAGAAAGTTTC-AAGGGTT
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAA-GGTC
* * * * *
3459064 AAA-ACAGACAAGTAGACTTGAGGT---G-AG---GTAGGGTC
1 AAAGTC-GACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * * *
3459099 AAAGTTGATAGGTAGACTTAAGGGTAAGAAAGTCTCTAAGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * *
3459142 -AAGCCGACAAGCAGACTTGAGGTGAGGCAGTCTCCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * *
3459183 AAAGCCAACAGGCAG-TTTGAGGGTAAGAAAG--TCTAAGGGTC
1 AAAGTCGACAGGCAGACTTGA-GGTAAGGAAGTCTCTAA-GGTC
* * * *
3459224 AAAGTCGATAGGCAAACTTGA-G-ATGCGATAGTCTCTAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAG-GA-AGTCTCTAAGGTC
* * * * *
3459266 AAAGTTGAGAGGAATG-C-TGAAGGTAAGAAAGTCTCTAGGGTC
1 AAAGTCGACAGGCA-GACTTG-AGGTAAGGAAGTCTCTAAGGTC
* * * * * *
3459308 AAAGTTGACAGGCAGACTTGAGGTGAGGCAGTCTTTAGGGTA
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* * * ** *
3459350 AAAGTTGACAAGCAAAC-TGAGGTAAAAAAGTCT-TCAGGGTC
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCT-AAGGTC
* * *
3459391 AAAG-CTGATAGGCAGA-TTGAGGGTAAGAAAGTCTCTAGGGTC
1 AAAGTC-GACAGGCAGACTTGA-GGTAAGGAAGTCTCTAAGGTC
* * * * * * * *
3459433 AAAGCCGACATGCAGACTTGAGATGAGGCAGCCTTTAAGGTT
1 AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
* *
3459475 AAAGCCGACAAGCAGA-TTGAGG
1 AAAGTCGACAGGCAGACTTGAGG
3459497 GTGAGAATTG
Statistics
Matches: 15022, Mismatches: 4535, Indels: 2995
0.67 0.20 0.13
Matches are distributed among these distances:
30 3 0.00
31 29 0.00
32 52 0.00
33 16 0.00
34 94 0.01
35 540 0.04
36 121 0.01
37 8 0.00
38 48 0.00
39 44 0.00
40 123 0.01
41 1432 0.10
42 11113 0.74
43 1309 0.09
44 85 0.01
45 5 0.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.20
Consensus pattern (42 bp):
AAAGTCGACAGGCAGACTTGAGGTAAGGAAGTCTCTAAGGTC
Found at i:3439154 original size:126 final size:125
Alignment explanation
Indices: 3436179--3446198 Score: 896
Period size: 126 Copynumber: 80.6 Consensus size: 125
3436169 GCCTTGAAGA
* * * ** * * *
3436179 TAAGAAAGTCTCTAGGGTCAAAGCCGACAAGCAGACTTG-AGGTGAGGTACTCTCCAAGGTCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * * * * * * * * * *
3436243 ACCGAAATGCAGACTTGTGTTGAGGCAGTCTCTAAGGTCAAAGTCGACAA-GAAAAC-TGAGGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGA-GT
* * * * ** * *
3436305 TAGGAAAGTCTCTAGGGTCAAAGT-TAGCAGGCAGACTTG-AGATGAGGCACTCTCTAGTGTCAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGA-CAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * ** * * * *
3436368 AGCCGACAGGCA-ACCTGAGGGTAAGAAAGTCTCCTA-GGTCAAAACCGACAGGTAGGCTAGAGG
63 AGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCC-AGGGTCAAAGCCGAAAGGTAGACTTGA-G
3436431 T
125 T
* * * * * * *
3436432 GAGGCCA-TTTCCTA-GGTCAAAGTCGACAGGTAAACT-AAGTGTGAGAAAGTCTCTCA-GGTCA
1 TAAG-AAGTCT-CTAGGGTCAAAGTCGACAGGCAGACTGAAG-GTAAGAAAGTCTCT-AGGGTCA
* * * * ** * * *
3436493 AAGCCAATAGGCAGACTTGAGGTGAGGTAGTCTCCAAGGCCAAAGCCGACGGGTATAC-TAAGGC
62 AAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * * * *
3436557 TGAGAAAGTCTACCA-GGTCAAAGCCAACAGGCAAACT-AGATGTGACG-CAGTCGCCAGGGTCA
1 TAAG-AAGTCT-CTAGGGTCAAAGTCGACAGGCAGACTGA-AGGT-AAGAAAGTCTCTAGGGTCA
* * * * * ** * * * *
3436619 AAGCCGAAAGGTAAAC-TAAGGGTAAGAAAGTCTCTAAGATCAAAGCC-AACAGGCAGACTTGAG
62 AAGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGAG
*
3436682 G
125 T
* * * * * *
3436683 TAAGGCAGTCTC-CGTGGCCAAAG-CTGACAGGCAGATTG-AGGCTAAGAAAATCTCTAAGGTCA
1 TAA-GAAGTCTCTAG-GGTCAAAGTC-GACAGGCAGACTGAAGG-TAAGAAAGTCTCTAGGGTCA
* * * * * * * * * * *
3436745 AAGTCGACAGGTAAACTTGAGATGAGATAGTCTCCAAGGTTAAGGCCGAGAGGCAGAC-TGAAGG
62 AAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTG-AGT
* * * *
3436809 TAAAAAGGTCTTTAGGGTCAAAG-CTGATAGGCAGACTTG-AGGT--G--AG---CTAGGGTAAA
1 TAAGAA-GTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * * * * ** * * ** *
3436865 AGCTGATAGGTAGCCTTGAGGGTAAGAAAGTCTCCAAGGTCAAAGCTGTCAGGGAGACTTGAGGT
63 AGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
*** * * * ** * * * * *
3436930 GGGGCAGTCTCTAGGGTCAAAGCCAATGGGCGGGCT-TAGGATAAGAAGGTCTAC-AAGGTCAAA
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGG-TAAGAAAGTCT-CTAGGGTCAAA
* * * * * * * * *
3436993 GTCGACAGGCAAACTTGAGGTAAGGCAGTCTCAAAGGTCAATG-CTAAGAGGTAGACTATG-GG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACT-TGAGT
* * * * ** * * *
3437055 TAAGAAAGTCTCCAAGGTCAAAGCCGAGAGATAGACTG-AGAGTAGGAAAGTTTCTCGGGTCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAG-GTAAGAAAGTCTCTAGGGTCAAA
* * * * * * * * * * *
3437119 ACCAATAGGCAGACTTGAGATGAGGCAATCTCCAAGGTCAAAGCTGATAGGCAGATTTGAGGT
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* ** * * * * * * * * *
3437182 TAGGCTGTCGCCAGGGTCAAAGTCGATAGACTGACTGAAGATAAGAAAGTCTCCAAGGTCAATGC
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGC
* * * * * *
3437247 CGACAGGTAGACTTGAGGTGAGGTAGTCTCTAAGGTCAAAGCCGAAAGGCAAACTTGTGT
66 CGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * * * *
3437307 TAGGCAGTCTCCAAGGTCAAAATCGAGAAGTAGACTGAAGGTAAGATAGTCTCTAGGG-CAAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTC-AAAG
* * * * * * ** ** * * *
3437371 TCGACAGGTAGATTTGAGATTAGGCAACCTTTAGGGTCAAAGTCGAAAGGGAGAC-TGAGG
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * ** * *
3437431 TAAGAAGGTCTTTAGGGTCAAAG-CTGACAGGCAAACTTG-AGGTGAGATGGTCTCCAAGGTCAA
1 TAAGAA-GTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * * *** * * * * * ** **
3437494 AGCTGAGAGGCAGACTTGAGGTGCGACGGTCTCTAAGGTCAAAGTTC-ACAGGCAGACTAAAAA
63 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAG-CCGAAAGGTAGACTTGAGT
* * * *
3437557 TAAGAAAGTCTCTAGAGTCAAAG-CTGAC-GGATAGACTTG-AGGTAAG---G---C-AAGGTTA
1 TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGG-CAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCA
* * * * * * * * * *
3437612 AAGCCGAC-GGCTAGACTCGAGATGATGCAGTTTCCAAGGTCAACGTCGATAGGCAGA-TTGAGA
62 AAGCCGACAGGC-AGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAG-
*
3437675 G
125 T
* * * * * * * * * *
3437676 TAAGAAAGTCTCCAAAGG-CAAAG-CTGACAAGTAGACTTG-AGATGAGGAAGTATCCAAGGTCA
1 TAAG-AAGTCT-CTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCA
* * * * ** ** ** ***
3437738 AAGCTGACAAGTAGAC-TGAGGGTAAGAAAGTCTCCAAAGTCAAAG-TTAACAAACAGACTTGAA
62 AAGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTG-A
3437801 GT
124 GT
* * * * * * * * * * *
3437803 GAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAAACTAAAGGTAAGAAAGTCT-TCAGGATTAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCT-AGGGTCAAAG
** * * * * * * *
3437867 CCGATGGGCAAACTAGAGGTGA-G--G----CAGGGACAAAGTCGACAA-GCAGACTTAAAGG
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTT-GAGT
* ** * *
3437922 TAAGAAAGTCTCTAGGGTCAAAGTCGACAAGCAGACTTG-AGGTAAGGCAGTCTCCAAGGTCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAA
** * ** * *
3437986 GCCGACAGTTA-AGC-TGAAGGTAAGAAAGTCTCCAAAGTTAAAGTCAAAGCC-AATAGGCAGAC
64 GCCGACAGGCAGA-CTTG-AGGTGAGGTAGTCTCC--AG----GGTCAAAGCCGAA-AGGTAGAC
*
3438048 TTAAGGT
120 TTGA-GT
* * * * * * * * * *
3438055 GAGGTAGTCTCTAGAGTCAAAGCCAATAGGTAGACT-AAGGGTAAGAAAGTCTTTAGGGTCGAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTCAAAG
* * * * * * * * * * *
3438119 CTGACTA-GTAGACTTGAGATGAGGTAGTCTACTA-GCTTAAAGCAGACAGGCAGAC-TAAGGG
65 CCGAC-AGGCAGACTTGAGGTGAGGTAGTCT-CCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * ** * *
3438180 TAAGAAAGTCTCAATGGT-TAAGGCTGAGAGGCAGACTTG-AGTTGAGGCAGCCT-TGAGGG-AA
1 TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCT-AGGGTCA
* ** * ** * * **
3438241 AAGCTGACAGGCAGAC-TGAGG-GAAAGAAAATCTTTAAGGTCAAAGCCGACAGAAAGACTTGAG
62 AAGCCGACAGGCAGACTTGAGGTG--AGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAG
*
3438304 A
125 T
* * * * * * * *
3438305 TGAGACAGTATCCAAGGTCAAAGTCAAGAGGCAGACTGATGGTAAGAAAGTCTCTGGGGTCAAAG
1 TAAGA-AGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * * * * *
3438370 CCGATAGGCAAACTTGA-G-GA-G-AG-GT--AGGGTTAAAGTCGACAGGCAGACTTTTG-GT
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGAC--TTGAGT
* * * * * * * * * * * *
3438425 GAGGCAGTCTATAGGGTCAAAGCCGACAGACAGACTTAGGGTGAA-AAGGCCTCCAAGGTCAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGT-AAGAAAGTCTCTAGGGTCAAAG
* * * * * * * * * * * *
3438489 TCGATAGGCAGACTTTAGGTAAGGCAGTCTCTAAGGTCAATA-TCGAGAGGCAAAC-TGAAGG
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAA-AGCCGAAAGGTAGACTTG-AGT
* * * * * * *
3438550 TGAGAAAGTCTCCA-GCTCAAAGCCAACTA-GCAGACTGAAGGTAAGAAAGTCTCCAAGGTCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGAC-AGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * * * * *
3438613 GTCGATAAGCAGACATGAGGAGAGGTAGTCTCCAGGGTCAAAGCCGAAAAGTAGACTTGAGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * *
3438675 T--G-AG---GTAGGGTCAAAG-CTGATAGGTAGATTTGAGGGTAAGAAAGTCCCTATGGTCAAA
1 TAAGAAGTCTCTAGGGTCAAAGTC-GACAGGCAGA-CTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * *** * * *
3438733 GCCGACAAGCAGACTTGAGGTGAGGCAGTTTCCCTAGTCAAAGCTGATAGGCAGACTT-AGT
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * * * *
3438794 GTAAGAAAGTCTATAAGGTTAAAGTCGACAGGCAGACTTG-GGGTGAGATAGTCTCTTGGGCCGA
1 -TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * * ** * *
3438858 TGCCGAGAGGCAGACTATG-GGTAAGAAAGTCTCCAGGGTCAAAGCCGATAGGTAGACTTGAGA
63 AGCCGACAGGCAGACT-TGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * ** *
3438921 AAAGGAAGTCTCTACGGTCAAAGTCGACAGGCAGACT-AAGGGTAGGAAAGTTTCCCGGGTTAGA
1 TAA-GAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTCA-A
* * * * * * * * * * *
3438985 A-CCAATAGGCGGACTTGAGATAAGGCAGTCCCCAAGGTGAAAGCTGACAGGTAGACTTGAGGT
63 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
** * * * *
3439048 TAAGCTGTCTCTTGGGTCAAAGTCGACAGGTAGACTGAAGGTAAGAAAGTCTCTAAGGTCAAAGT
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGC
* * * *
3439113 CGACAGGCAGACTTGAGGTGAGGTAGTCTCTAGGGTCAAAGCCAAAAAGTAGACTTGTGT
66 CGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * *
3439173 TGAGGCAA-TCTCTAGGGCCAAAATCGACAAGCAGACTGAAGGTAAGAAAGTCTTTAGGGTAAAA
1 T-AAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * * * * ** * * *
3439237 G-CTACCAGGTAGATTTGAGATGAGGTAGCCTTCAGGGTCAAAGTTGAAAGGCAGAC-TGGGG
64 GCCGA-CAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * * ** * *
3439298 TAGGAAAGACTCAAGGGTCAAAGTCGACAGACAGACTTAAGATGAGGTAGTCTCCAAGGTCAAAG
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * ** * * * ** * * *
3439363 CCGACAGGCAAAC-TGAGTGTAAGAAAGTCTCCAAGGTTAAAGCTGACTGGCAAACTTAAAGT
65 CCGACAGGCAGACTTGAG-GTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTT-GAGT
* * * * *
3439425 GCAACG--GTCT-TCAAGGTCAAAG-CTGACAGGCAGACTAAAAGTAAAAAAGTCTCTAGGGTCA
1 -TAA-GAAGTCTCT-AGGGTCAAAGTC-GACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCA
* * * * * * * * * *
3439486 AAGCCGACAAGTAGACTCT-AGATGACGCAGTTTTCAGGGTCAAAGTCGACAGGCAGA-TTGAGA
62 AAGCCGACAGGCAGACT-TGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAG-
*
3439549 G
125 T
* * * * * * * * * *
3439550 T-AGAAAGTCTCCAAGGTCAAAG-CTTACAAGTAGACTTG-AGATGAGGAAGTCTCCAAGGTCAA
1 TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* ** * * * * * * **
3439612 AGCCGACAGGCAGAC-TGAGGGTAAGAAACTCTCTAAGGTCAAAGTCGATAGGCAGACTCAAGGT
63 AGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * * * * * * *
3439676 GAGGCAGTCTCCAAGGTCAAAGCCGATAGGCAAACTAAAGGTAAG-AACTCTCTAGGATTAGA-C
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGC
* * * *
3439739 TCGACAGGCAAACTTGAGGTGA-G--G--T--AGGGTGAAAGCCGAAAGGTAGACTTAAAGG
66 -CGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTT-GAGT
* ** * ** * *
3439794 TAAGAAAGTCTCCAAAGTCAAAGTCGACAAGCAGACCTG-AGGTAAGGCAGTCTCCAGAGTCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGA-CTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * ** * * * * *
3439858 GCCGACAGGTAGAC-TGAGGGTAAGAAAGTCTCTAAGGTCAAA-ACTAATAGGTAGACTTAAGGT
64 GCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGA-GT
* * * * ** * *
3439921 GAGGTAGTCTGTAGGGTCAAAGTTAATAGGCAGACT-AAGGGTATGAAAGTCTCTAGGGTCAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTCAAAG
** * * ** * * * * * *
3439985 CCGATTGGTAGACTTGAGATGAGGT-GATCTATAGGCTTAAAGCCGATA-GAAGAC-TAAGGA
65 CCGACAGGCAGACTTGAGGTGAGGTAG-TCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * ** * *
3440045 TAAGAAAGTCTCAAGGGTCAAAGCCAACAGGTAGACTTG-AGTTGAGGCAG-C-CATGGGGGACA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTC-T-AGGGTCA
* * ** * ** * * * *
3440107 AAGCCGACAAGCAGA-TTGAGGGTAAGAAAATCTCCAATGTCAAAGCCGACAGGAAGTCTTGAGA
62 AAGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * *
3440171 TCAGACAGTCTCCAAGGTCAAAGTCAAGAGGCAGACTGAAAGTAAGAAAGTCTGT-GAGGTCAAA
1 TAAGA-AGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAG-GGTCAAA
* * * * * * *
3440235 GCCGATAGGCAAACTTGAGGTGAGGTA------A-GGTCAAAACTGATAGGTAAACTTGAGGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * * ** *
3440291 TAAGAAAGCCCCCAGGGTCAAAGCCGACAGGTAGACTTATGGTGAGGCAGTCCCTAGGGTCAAAG
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
** * * ** ** ** * * *
3440356 CCGACAGATAGACTT-A-GTGTAAGAAGGTCTTTAGGGTCAAAATCGATCGGCAAACTTGACGG
65 CCGACAGGCAGACTTGAGGTG-AGGTA-GTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * * ** * * *
3440418 GAGGCAGTCTCCAAGGTCAATGTTGAGAGGCAGACTGAATATAAGAAAGTCTCCAAGGTCAAAGT
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGC
* * * * * * * *
3440483 CGACAGGTAGACTTGAGATGAGGTAGTCTCTAGGTTCAAAGCTGACAGGCAGA-TTGAGGG
66 CGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * * * ** * *
3440543 TAGGAAATTCTCCAAGGTCAAA-ACTAGCAGGCAGACTTAAGATGAGGCAGTCCCTAGGATCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGA-CAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * * * *
3440607 GCTGACAGACAGACTTGAGG-GTAGGCTA-TCTCCAAGGTCAAAGCCGACAA-GCAGACTGGAGG
64 GCCGACAGGCAGACTTGAGGTG-AGG-TAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGAGT
* * * * * ** *
3440669 TAAGAAAGTCTCCAAGATCAAAG-CTGACAAGCAGACTTG-AGGTGAGGTAGCCT-TCAGGGTCA
1 TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCT-AGGGTCA
* * *
3440731 AAGCCAAAAGGCAGACTTGAGGTGAGG-A------AGGGTAAAAGCC-AACAGGTAGACTTGAGG
62 AAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGA-G
*
3440788 G
125 T
* * ** *
3440789 TAAGAAAGTCTCTAAGGG-CAAAG-CTGACAGGCAAACTTG-AGGTGAGGCAGTCTGTAGGGTCA
1 TAAG-AAGTCTCT-AGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCA
* * * * * * *
3440851 AAGCTGATAGGCAGACTT-AGG-GTAAGAAGGTCTCTAGGGTCAAAGTCGACAGGTAGACTT-AT
62 AAGCCGACAGGCAGACTTGAGGTG-AGGTA-GTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-
3440913 GGT
124 -GT
* * ** * * * *
3440916 GAAGTAGTCTCTAGGGTCAAAGTCGACAGATAAACT-TAGGATAAGAAGGTCTCTAGAGTCAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGG-TAAGAAAGTCTCTAGGGTCAAAG
* ** * * * * * *
3440980 CCAATTGGCAGACTTGAGGTGAGGTAGTATCCAAGGTCAATGCCGAGAGGCAGAC-TGAAT
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * * * *
3441040 GTAAGAAAGTCTCCAAGGTCAAAG-CTGATAGGTAGACTCG-AGATGACG-TAGTCTCTAAGTTC
1 -TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGGCAGACT-GAAGGT-AAGAAAGTCTCTAGGGTC
** * * * * *
3441102 AAAGTTGACAAGCAGAC-TGAGG-GTAGGAAAGTCTCTAGGGTCAAA-AC-AAGCAGGCAGACTT
61 AAAGCCGACAGGCAGACTTGAGGTG-AGG-TAGTCTCCAGGGTCAAAGCCGAA--AGGTAGACTT
*
3441163 AAGAT
122 GAG-T
* * * * * * * **
3441168 GAGGCAGTCCCTAGGATCAAAG-CTGATAGGCAGACTTG-AGGTTAGGCTA-TCTCTAGGGTCAA
1 TAAGAAGTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGG-TAAGAAAGTCTCTAGGGTCAA
* * ** * ** * * *
3441230 AGGCAACAGGCAGAC-TGAAATTAAGAAAGTCTCTAGGGTCAAAGTCGACAA-GCAGACTTGAGG
63 AGCCGACAGGCAGACTTG-AGGTGAGGTAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGA-G
3441293 T
125 T
* * * * * * * *
3441294 GAGGTAGTCTCTAGGGTCAAAGTCTAAAGGCAAACTTG-AGGT--G--AG---GTAAGGTCAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * * *** * *
3441351 CCGATAGGTAGACTTAAGGATAAAAAAGTC-CCTAGGGTTAAAGCC-AATAGGCAGACTTGAGGT
65 CCGACAGGCAGACTTGAGG-TGAGGTAGTCTCC-AGGGTCAAAGCCGAA-AGGTAGACTTGA-GT
* * * * * * * *
3441414 GACGCAGTCTCGAGGGTCAAAG-CTGATAGGCAGACTTAGGGTAAGAAGGTCTAC-AGGGTCAAA
1 TAAGAAGTCTCTAGGGTCAAAGTC-GACAGGCAGACTGAAGGTAAGAAAGTCT-CTAGGGTCAAA
* * * * * * *
3441477 GTCGACAGGCAGACTTGGGGTGAGGCAGTCTCCAGGGTCAATGTCGAGAGGTAGACTATG-GG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACT-TGAGT
* * * * * **
3441539 TAGGAAAGTCTCGAAGGTCAAAGCCGACAGACAGACTTG-A-G-AAGGGGTAGTCTCTAGGGTCA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAA--GAAAGTCTCTAGGGTCA
* * * *** * * * * * *
3441601 AAGCCGACAAGCAGAC-TAAGGGTAAAAAACTTTCTC-GGGTTAAAACC-AATAGGCAAACTTGA
62 AAGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTC-CAGGGTCAAAGCCGAA-AGGTAGACTTGA
*
3441663 GA
124 GT
* * * * *** *
3441665 TAAGGAAGTCCCCAAGGTCAAAG-CTGACAGGCAGACTTG-AGGTTAGGCTGTCACTAGGGTCAA
1 TAA-GAAGTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * * * * * * * *
3441728 AGTCAACAAGCAAAC-TGAAGGT-AAGAACGTCTCCAGGGTCAATGCCGACAGGCAGACTTGAGG
63 AGCCGACAGGCAGACTTG-AGGTGAGGTA-GTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-G
3441791 T
125 T
* * * * * * * * * * **
3441792 GAGGTAGTC-CTTAGGGTCAAAGCCGAAAGGAAAACTTG-TGTTGAGGCAGTCTCTAGGGTCATA
1 TAAGAAGTCTC-TAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCA-A
* * * * * *
3441855 A-CCGACAAGCAGAC-TGA----A---AGTCTCTAGGGTAAAAGTCGACAGGTAGATTTGAGAT
63 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAG-T
* * * * * *
3441910 GAGGTAGT-TGCTAGGGTCAAAGTCGAAAGGGAGACTGAA-GT-AGAAAAGTCTCAAGGGTCAAA
1 TAAGAAGTCT-CTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAG-AAAGTCTCTAGGGTCAAA
* * * * * * * *
3441972 GTCGATAGACAGACTT-AGAATGAGGTAGTCTCCAAGGTCAAAGCCGATATGCAGAC-TGAGT
64 GCCGACAGGCAGACTTGAG-GTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * *
3442033 GTAAGAAAGTCTCAAAGG-CTAAAG-CTGACAAGCAGACTTAAGGTAAGACAGTCTCTAAGGTCA
1 -TAAG-AAGTCTCTAGGGTC-AAAGTC-GACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCA
** * * * *** * * * * * **
3442096 AAGTTGGCAAGCAGACTTGAGGTGTGACGGCCTCCAAGGTCTAAA--CTAGTAGGCAGACTAAAA
62 AAGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTC-AAAGCCGA-AAGGTAGACT-TGA
3442159 G-
124 GT
* * * * * *
3442160 TAATAAAGTCTCTAGGGTCAAAGCCGAGAAGTAGACTTG-GGGT--G--AG--TC-AGGGTCAAA
1 TAA-GAAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAA
* ** * * * * * * * * *
3442217 GTCGACAGGCAGACTCAAGATGATGCAGTTTCTAGGGTCAAAGTCGACAGGCAGA-TTGAGAG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAG-T
* * * *** * * * * * * *
3442279 TAGGAAAGTCTCAATGGTCAAAG-CTGACAAATAGACTTAAGATGAGGAAGTCTCCAAGGTTAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * *** * * *
3442343 GCTGACAGGTAGA-TTGAGGAT-AAAAAGTCTCCAAGGTCAAAGTC-AACAGGCAGACTTGAGGT
64 GCCGACAGGCAGACTTGAGG-TGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGA-GT
* * * * * * * * * * * * *
3442405 GAGGCAGTCTCCAAGGTCAAAGCCAATAGGCAGACTGAAGGTAAGAAAGTCTCCAAGATTAAAAC
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGC
* * * * * * * *
3442470 CGATAAGCAAACTGGAGGTGA-G--G--T--AGGGTCAAAGTCGATAGGTAGGCTTGAAGG
66 CGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTG-AGT
* * * * * * * *
3442524 TAAGAAAGTCTCCAAGTTCAAA-ACTGATAAGCATACTTG-AGGTAAGGCAA-TCTCTAGGGTCA
1 TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGGCAGAC-TGAAGGTAA-GAAAGTCTCTAGGGTCA
* *** * * * * *
3442586 AAGCCGACAGGCAGAC-TGAGGGTAAAAAAGTCTCCAAGGTTAAAGCC-AATAGGCAAACTTAAG
62 AAGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGA-
3442649 GT
124 GT
* * * * * * * * *
3442651 GAGGTAGTCTCCAAGGTCAAAGCCAATAGGCAAACT-AAGCGCT-AGAAAGTCTCTAGGGTCAAA
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAG-G-TAAGAAAGTCTCTAGGGTCAAA
* * * * * * * * * * * * ** *
3442714 GCTGACTGGTAGACTTGAGATGAGGCAATCTACAGGCTTAAAGCCGACAGGCAGAATAAAGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * * ** * *
3442776 TAAGAAAGTCTCAAGGGTCAAAGCCAACATGTAGACTTG-AGTTGAGGCAGCCT-TAAGGGACAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCT-AGGGTCAA
* * * * ** * * * *
3442839 AACTGACAAGCAGAC-TGAGGGTAAGAAAATCTCTTA-GGTCAAAGCC-AACAGGTAAACATGAG
63 AGCCGACAGGCAGACTTGA-GGTGAGGTAGTCTC-CAGGGTCAAAGCCGAA-AGGTAGACTTGAG
*
3442901 A
125 T
* * * * * * * * *
3442902 TGAGATAGTCTCTAAGGTCAAAGTCGAGAGGCAGAGTAAAAGTAAAAAAATCTC-CGAGGTCAAA
1 TAAGA-AGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAG-GGTCAAA
* * * *
3442966 GCTGACATGCAGACTTGAGGTGA-G--G--T--AGGGTCAAAGCCGATAGGTAGACTTGAGGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * ** * * * ** **
3443022 TAAGAAAGTCCCCAAAGTCAAAGCCGACAGGCAGACTTATGGTGTGGCAGTCTCTAGGGTCAAAG
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * * * *
3443087 CC-AGCAGGCAGACTT-AGG-GTAAGAAGGTCTTCAGGGTCAAAGTCGATAGGCAGACTTGAGGT
65 CCGA-CAGGCAGACTTGAGGTG-AGGTA-GTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * * *
3443149 GAGGCAGTCTCTAGGGTTAATG-CTGAGAGGCAGACTAAAGGTAAGAAAGTCTCCAAGGTCAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTC-GACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * * * * * * *
3443213 CCGATAGGCAGAGTTGAGATGAGGTTGTCTCTAGGTTCAAAGCTGATAA-GTAGAC-TAAGGG
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGA-GT
** * * * ** * * * * * * *
3443274 TGGGAATGTCACCAAGGT-AAAAACCAGCAAGCAGACTTGATATG-AGGCAA-TCGCTAGGATCA
1 TAAGAA-GTCTCTAGGGTCAAAGTCGA-CAGGCAGAC-TGA-AGGTAAGAAAGTCTCTAGGGTCA
* * * * **
3443336 AAGCTGACAGGCAGGCTTGAGGTTAGGCTA-TCTCCAGGGTCAAAGCC-AATAGGCAGACTACAG
62 AAGCCGACAGGCAGACTTGAGGTGAGG-TAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGAG
*
3443399 G
125 T
* * * * * ** *
3443400 TAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTTG-AGGTGAGGTAGTCTTTAGGGTCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * * * *
3443464 GTCGAAAGGCAGACCTGAGGT-A---AG-GT--AGGGTGAAAGCC-AATAGGTAGACTTGAGGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGA-GT
* ** *
3443520 TAAGAAAGTCTCTAGGGTCAAAGAT-GATAGGCAGACTTG-AGGTAAGGCAGTTTCTAGGGTCAA
1 TAAG-AAGTCTCTAGGGTCAAAG-TCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
** * * ** ** * * **
3443583 AGCTAACAGGCAGACTTAAGGTAAGAAAGTCTTTAGGGTCAAAGTCGACAGACAGACTTGAGGT
63 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * * * * * * * *
3443647 GAAGCAGTCTCCATGGTCCATGCCGAGAGTCA-AATTAAGGGTAAGAAAGTTTCAAGGGTTAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAA-GGTAAGAAAGTCTCTAGGGTCAAAG
* * * * * * * * *
3443711 CCGACAGACAAACTTGAGATGAGGTAGTCTCTAAGGTTAAAACC-AATAGGCAGAC-TGAAGG
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTG-AGT
* ** * * * * * * *
3443772 TAGGAAAGTCTCTAGGGTCAAAACCAACAAGCAAACTTG-AGATGAAGCAA-TC-CCAGGGTTAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGT-AAGAAAGTCTCTAGGGTCAA
* ** * * * * * ** *
3443834 AACTAACAGGCAGACATAAGGTTAGGCTA-TCTCCAAGGTCAAAGCCGATAGCCA-AATTGAAGG
63 AGCCGACAGGCAGACTTGAGGTGAGG-TAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTG-A-G
3443897 T
125 T
* * *
3443898 AAAAAAGTCT-TCAGGGTCAAA---G-C---C---TTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
1 TAAGAAGTCTCT-AGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
* * * * * * * **
3443952 CCGACAAGCAAACTTGAAGTGAGGTACTCTCCAAGGTCAAAGCTGAAAGGCAGACTTTTGT
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * * *
3444013 TGAGGCAGTCCCCAAGGTGAAAGTCGATAGGCAGAC--AAGAGTAAGAAAGTCTCAAGGGTCAAA
1 T-AAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAG-GTAAGAAAGTCTCTAGGGTCAAA
* * * * ** * * * * * *
3444076 GCCAACAGGCAAACTTGAGATGAGGCAGTCTTTAGGGTTAAAGCTGACAA-GCAGGC-TAAGGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGA-GT
* * * * ** *** * *
3444138 TAAGAAAGTCTCCTA-GGTCAAAGCCAAGAGGCAGA-TTAGAGGTGTGGCCGTCTCCAAGGTCAA
1 TAAG-AAGTCT-CTAGGGTCAAAGTCGACAGGCAGACTGA-AGGTAAGAAAGTCTCTAGGGTCAA
* **
3444201 AGCCGAAAGGCAGA-TTGAGTGTGAGAAAGTCT------T--AAGCC-AATA-GTCAGACTTGAG
63 AGCCGACAGGCAGACTTGAG-GTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGT-AGACTTGAG
3444255 CT
125 -T
* * * * * * * * * * * *
3444257 GAGGCAGTCTCCAAGG-CTAAAGCCGACAGGCATATTGAGGGTAAGAAAGTTTCCAAGGTCAAAG
1 TAAGAAGTCTCTAGGGTC-AAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAG
** * * * * * * * * * * * *
3444321 CTAATAAGCAAACTAGAGGTGAGGCAGTCTCCAAGATCAAAGCTGAAAGGCAGACTAAGGGC
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACT-TGAGT
* * * * * * * * *
3444383 AAAAAAGCCTCTAGGGTCAAAG-CCAGCAGACAGACTTG-AGGTATAG-CAGTCTCCACGGACAA
1 TAAGAAGTCTCTAGGGTCAAAGTCGA-CAGGCAGAC-TGAAGGTA-AGAAAGTCTCTAGGGTCAA
** * * * ** * * * *
3444445 AGCAAACAGGTAGAC-TAAGTGTAAGAAAATCT-CAAGGTCAAAGCCGATAGGTAGACTTGAGA
63 AGCCGACAGGCAGACTTGAG-GTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * *
3444507 TGAGACAGTCTCCAAGGTCAAAGTCGAGAGGCAAATTGAAGGTAAGAAAGTCT-TCGGAGTCAAA
1 TAAGA-AGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGG-GTCAAA
* * * * *
3444571 GCC-ACAGACAGACTTGAAGTGA-G--G--T--AGGGTCAAAGCTGACCA-GTAGACTTGAGGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGA-GT
* * * * * * * ** *
3444626 TAAGAAAGTCTCCAAGGTCAAAG-CTAACAGGCAGATTTATGGTGAGGCAGTCTCCAGGGTCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTC-GACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAA
* * * * * * * *
3444690 GGCGACAGACAGACTT-AGGAT-AAGAATGTCTCCAGGGTCAAAGTCGATAGGTGGACTTGAGG
64 GCCGACAGGCAGACTTGAGG-TGAGGTA-GTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * *
3444752 TAAGGCAGTCTCCAAGGTCAATA-CCGAGAGGCAGACT-ATAGGTAAGAAAGTCTAC-AAGGTCC
1 TAA-GAAGTCTCTAGGGTCAA-AGTCGACAGGCAGACTGA-AGGTAAGAAAGTCT-CTAGGGTCA
* * * * * * * * * *
3444814 AAGCTGACAGGTAGA-TGTGAGATAAGGCAGTCTCTAGGTTCAAAGCTGACAGGCAGAC-TGATG
62 AAGCCGACAGGCAGACT-TGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-G
*
3444877 G
125 T
* * * * * * * * * * ** * *
3444878 TAGGAAAGTCACCAAGGTCAAA-ACCAGTAGGTAGACTTG-AGATGAGGCAGTCCCTAGGATCAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGA-CAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAA
* * * * *
3444941 A-CCTGACAGGCAGACTTGAGGTTAGGCTA-TCTCCAAGGTCAAAACTGACAA-GCAGA-TTCGA
63 AGCC-GACAGGCAGACTTGAGGTGAGG-TAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTT-GA
*
3445002 GG
124 GT
* * * * * * * ** *
3445004 TAAGAAAGTCTCCAAGGTCAAAGCCGATAAGTAGACTTG-AGGTGAGGTAGTCT-TCAAGGTCAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCT-AGGGTCAA
* * * * * * *
3445067 AGCCGAAAGGCAGACTTAAGGTGA---AG----CAAGGTCAAAACTGATAGGTAGACTTGAGGG
63 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * * * ** * * * *
3445124 TAATAAAGTTTCTAGGGTCAAAGCCAACAGGTAGACTTG-AGATGAGGCAGTTTCCAGGGTTAGA
1 TAA-GAAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAA
** * * * * * * *
3445188 GTTGACAGGCAGACTT-AGG-GTAAGAAGGTCTCCAAGTTCAAAGTCGACAA-GCAGACGTGAGG
64 GCCGACAGGCAGACTTGAGGTG-AGGTA-GTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGA-G
3445250 T
125 T
* * * * * * * * * * *
3445251 TAGGCAGTCTCCATGGTCAATGCCGAGAGTCA-AATGAGGGTAAGAAAGTCTCAAGGGTCAAAGC
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGC
* * * * * * *
3445315 CGACAAGCAAACTTGAGATGAGGTAGTCTCTAGGGTCAAAGCCGACAGGCAGACTATG-GG
66 CGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACT-TGAGT
* * ** * * * * ** * * *
3445375 TAGAAAAGTCTCTAAGGTCAAAACCAATAGGCAGACTTG-AGATGAGGCAGTCCCTAGGATTAAA
1 TA-AGAAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAA
** * * * * * * * **
3445439 GCTAATAGGCAGACTTGAGGTTAGGCTA-TCTCCAAGGTCAAAGCCCATAGGCAAACTAAAGGT
64 GCCGACAGGCAGACTTGAGGTGAGG-TAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * *
3445502 AAAAAAGTCTCCAAGGTCAAA---G-C---C---TTGAAGGTAAGAAAGTC-CTTAGGGTCAAAG
1 TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTC-TAGGGTCAAAG
* * * * * * * *
3445556 CCAATAAGAAGACTTGAGGTGAGGTACTCTCCAGGGTCAAAGCTGAAAGGTAGTCTTGTGT
65 CCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* ** * * * * *
3445617 TGAGGCGGTCTCTAGGGTGAAAGTCGACAGGTAGGCT-AAGAGTATGAAAGTCTCCAGGGTCAAA
1 T-AAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAG-GTAAGAAAGTCTCTAGGGTCAAA
* * * * * * ** * * * *
3445681 GCCAACAGACAGACTTAAGATGAGGCAGTTTATAGGGTCAAAGCTGACAA-GTAAAC-TAAGGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGA-AAGGTAGACTTGA-GT
* * ** ** *
3445743 TAAGAAAGTCTCCTA-GGTCAAAG-CCAGTAGGCAGACT-AGAGGTGCGACCGTCTCTAGGATCA
1 TAAG-AAGTCT-CTAGGGTCAAAGTCGA-CAGGCAGACTGA-AGGTAAGAAAGTCTCTAGGGTCA
* * ** * * *
3445805 AAGTCGAAAGGCAGAC-TGAGTGTGAGAAAGTCTCTAGGGTCAAAGCC-AACTGGTAGACTTAAG
62 AAGCCGACAGGCAGACTTGAG-GTGAGGTAGTCTCCAGGGTCAAAGCCGAA-AGGTAGACTTGAG
*
3445868 G
125 T
* * * * * * * * * *
3445869 TAAGGCAGTCTCCAAGG-CTAGAGCCGACAGGCATACT-ACGGGTAAGAAAGTCTCCAAGCTCAA
1 TAA-GAAGTCTCTAGGGTC-AAAGTCGACAGGCAGACTGA-AGGTAAGAAAGTCTCTAGGGTCAA
* * * * * * * ** *
3445932 AGCCAACAGACAGACTAGAGGTGAGGCAGTCTCTAGGGTCAAAGTCGAAAGGCAGAC-AAAGGG
63 AGCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGA-GT
* * * * * ** * * *
3445995 TAAGAAAGTCTCTAGGGTTAAAG-CCATAAGCAGACTTG-AGATAAGGCAGTCTCCACGGCCAAA
1 TAAG-AAGTCTCTAGGGTCAAAGTCGACAGGCAGAC-TGAAGGTAAGAAAGTCTCTAGGGTCAAA
** ** *** * * * * * *
3446058 GTTGACAGGCAGAC-TGAGGAAAAAAAATCTCTAAGGTCAAAGCTGATAGGTAGACTTGAGG
64 GCCGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
* * * * * * * * *
3446119 TGAGATAGCCTCCATGGTCAAGGCCGAAAGGCAGACTGAAGGTAAGAATGTCT-TCAGGATCAAA
1 TAAGA-AGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCT-AGGGTCAAA
*
3446183 GCCGATAGGCAGACTT
64 GCCGACAGGCAGACTT
3446199 AGGGTAAGGT
Statistics
Matches: 7061, Mismatches: 2171, Indels: 1324
0.67 0.21 0.13
Matches are distributed among these distances:
114 7 0.00
115 16 0.00
116 137 0.02
117 39 0.01
118 195 0.03
119 555 0.08
120 678 0.10
121 35 0.00
122 14 0.00
123 24 0.00
124 161 0.02
125 1268 0.18
126 3311 0.47
127 505 0.07
128 21 0.00
129 4 0.00
131 4 0.00
132 64 0.01
133 23 0.00
ACGTcount: A:0.34, C:0.17, G:0.29, T:0.19
Consensus pattern (125 bp):
TAAGAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAAGGTAAGAAAGTCTCTAGGGTCAAAGC
CGACAGGCAGACTTGAGGTGAGGTAGTCTCCAGGGTCAAAGCCGAAAGGTAGACTTGAGT
Found at i:3440110 original size:83 final size:83
Alignment explanation
Indices: 3439952--3440171 Score: 183
Period size: 83 Copynumber: 2.6 Consensus size: 83
3439942 GTTAATAGGC
* * * * ** * * *
3439952 AGACTAAGGGTATGAAAGTCTCTAGGGTCAAAGCCGATTGGTAGACTTGAGATGAGGTGATCTAT
1 AGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGTCAGCCAT
**
3440017 AGGCTTAAAGCCGATAGA
66 AGGCACAAAGCCGATAGA
*
3440035 AGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGCCAACAGGTAGACTTGAGTTGAGG-CAGCCAT
1 AGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGTCAGCCAT
* * * *
3440099 GGGGGACAAAGCCGACAAGC
66 -AGGCACAAAGCCGA-TAGA
* * * * * * * *
3440119 AGATTGAGGGTAAGAAAATCTCCAA-TGTCAAAGCCGACAGGAAGTCTTGAGAT
1 AGACTAAGGATAAGAAAGTCT-CAAGGGTCAAAGCCAACAGGTAGACTTGAGAT
3440172 CAGACAGTCT
Statistics
Matches: 109, Mismatches: 25, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
82 4 0.04
83 60 0.55
84 42 0.39
85 3 0.03
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (83 bp):
AGACTAAGGATAAGAAAGTCTCAAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGTCAGCCAT
AGGCACAAAGCCGATAGA
Found at i:3442028 original size:83 final size:84
Alignment explanation
Indices: 3441870--3442047 Score: 184
Period size: 83 Copynumber: 2.1 Consensus size: 84
3441860 CAAGCAGACT
* ** * * * *
3441870 GAAAGTCTCTAGGGTAAAAGTCGACAGGTAGATTTGAGATGAGGTAGTTGCTAGGGTCAAAGTCG
1 GAAAGTCTCAAGGGTAAAAGTCGACAGACAGATTAGAGATGAGGTAGTTGCCAAGGTCAAAGCCG
*
3441935 AAAGGGAGACTGA-AGT-A
66 AAAGGCAGACTGAGAGTAA
* *
3441952 GAAAAGTCTCAAGGGTCAAAGTCGATAGACAGACTTAGA-ATGAGGTAGTCT-CCAAGGTCAAAG
1 G-AAAGTCTCAAGGGTAAAAGTCGACAGACAGA-TTAGAGATGAGGTAGT-TGCCAAGGTCAAAG
* * *
3442015 CCGATATGCAGACTGAGTGTAA
63 CCGAAAGGCAGACTGAGAGTAA
3442037 GAAAGTCTCAA
1 GAAAGTCTCAA
3442048 AGGCTAAAGC
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
82 1 0.01
83 58 0.74
84 17 0.22
85 2 0.03
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (84 bp):
GAAAGTCTCAAGGGTAAAAGTCGACAGACAGATTAGAGATGAGGTAGTTGCCAAGGTCAAAGCCG
AAAGGCAGACTGAGAGTAA
Found at i:3443379 original size:498 final size:497
Alignment explanation
Indices: 3442484--3443879 Score: 1145
Period size: 498 Copynumber: 2.8 Consensus size: 497
3442474 AAGCAAACTG
* * * * * *
3442484 GAGGTGAGGTAGGGTCAAAGTCGATAGGTAGGCTTGAAGGTAAGAAAGTCTCC-AAGTTCAAA-A
1 GAGGTAAGGTAGGGTCAAAGCCAATAGGTAGACTTGAGGGTAAGAAAGTCCCCAAAG-TCAAAGA
* * * * * * * *
3442547 CTGATAAGCATACTTGAGGTAAGGCAATCTCTAGGGTCAAAGCCGACAGGCAGACTGAGGGTAAA
65 C-GACAGGCAGACTTGAGGTAAGGCAGTCTCTAGGGTCAAAGCCAACAGGCAGACTTAAGGTAAG
* * * * * * * * * * * * * *
3442612 AAAGTCTCCAAGGTTAAAGCCAATAGGCAAACTTAAGGTGAGGTAGTCTCCAAGGTCAAAGCCAA
129 AAAGTCTTCAGGGTCAAAGTCGACAGACAGACTTGAGGTGAAGCAGTCTCCAGGGTCAATGCCGA
* * * * ** *
3442677 TAGGCAAACT-AAGCGCT-AGAAAG-TCTCTAGGGTCAAAGCTGACTGGTAGACTTGAGATGAGG
194 GAGGCAAACTAAAG-G-TAAGAAAGTTC-CAAGGGTCAAAGCCGACAGACAAACTTGAGATGAGG
* * * * * * * * * * * *
3442739 CA--ATCTACAGGCTTAAAGCCGACAGGCAGAATAAAGGTAAGAAAGTC-TCAAGGGTCAAAGCC
256 TAGTCTCTA-AGG-TTAAAACCAATAAGCAGACTGAAGGTAGGAAAGTCACCAA-GGTAAAAACC
* * * * * * * * * * *
3442801 AACATGTAGACTTGAGTTGAGGC-AGCCTTAAGGGA-CAAAACTGACAAGCAGAC-TGAGGGTAA
318 AACAAGCAAACTTGAGATGAAGCAATCC--CA-GGATCAAAACTAACAGGCAGACAT-AAGGTTA
*** ** * * * * * *
3442863 GAAAATCTCTTAGGTCAAAGCCAACAGGTAAAC-ATGAGATGAGATAGTCTCTAAGGTCAAAGTC
379 GGCTATCTCCAAGGTCAAAGCCAACAGGCAAACTA-CAGATAAGAAAGTCTCCAAGGTCAAAGCC
* * * * * *
3442927 GAGAGGCAGAGTAAAAGTAAAAAAATCTCCGA-GGTCAAAG-CTGACATGCAGACTT
443 GACAAGCAGACTAAAAGTAAAAAAATCT-CGAGGGTCAAAGTC-GAAAGGCAGACCT
* * *
3442982 GAGGTGAGGTAGGGTCAAAGCCGATAGGTAGACTTGAGGGTAAGAAAGTCCCCAAAGTCAAAGCC
1 GAGGTAAGGTAGGGTCAAAGCCAATAGGTAGACTTGAGGGTAAGAAAGTCCCCAAAGTCAAAGAC
** * *
3443047 GACAGGCAGACTT-ATGGTGTGGCAGTCTCTAGGGTCAAAGCCAGCAGGCAGACTTAGGGTAAGA
66 GACAGGCAGACTTGA-GGTAAGGCAGTCTCTAGGGTCAAAGCCAACAGGCAGACTTAAGGTAAGA
* * * * * * *
3443111 AGGTCTTCAGGGTCAAAGTCGATAGGCAGACTTGAGGTGAGGCAGTCTCTAGGGTTAATGCTGAG
130 AAGTCTTCAGGGTCAAAGTCGACAGACAGACTTGAGGTGAAGCAGTCTCCAGGGTCAATGCCGAG
* * * * * *
3443176 AGGCAGACTAAAGGTAAGAAAGTCTCCAA-GGTCAAAGCCGATAGGCAGAGTTGAGATGAGGTTG
195 AGGCAAACTAAAGGTAAGAAAGT-TCCAAGGGTCAAAGCCGACAGACAAACTTGAGATGAGGTAG
* ** * * * *
3443240 TCTCT-AGGTTCAAAGCTGATAAGTAGACT-AAGGGTGGGAATGTCACCAAGGTAAAAACCAGCA
259 TCTCTAAGGTT-AAAACCAATAAGCAGACTGAA-GGTAGGAAAGTCACCAAGGTAAAAACCAACA
* * * * * * * * *
3443303 AGCAGACTTGATATGAGGCAATCGCTAGGATCAAAGCTGACAGGCAGGCTTGAGGTTAGGCTATC
322 AGCAAACTTGAGATGAAGCAATC-CCAGGATCAAAACTAACAGGCAGACATAAGGTTAGGCTATC
* * * *
3443368 TCCAGGGTCAAAGCCAATAGGCAGACTACAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCA
386 TCCAAGGTCAAAGCCAACAGGCAAACTACAGATAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCA
** * * *** * **
3443433 GACTTGAGGTGAGGTAGTCTTTAGGGTCAAAGTCGAAAGGCAGACCT
451 GACTAAAAGTAAAAAAATCTCGAGGGTCAAAGTCGAAAGGCAGACCT
* * * ** *
3443480 GAGGTAAGGTAGGGTGAAAGCCAATAGGTAGACTTGAGGGTAAGAAAGTCTCTAGGGTCAAAGAT
1 GAGGTAAGGTAGGGTCAAAGCCAATAGGTAGACTTGAGGGTAAGAAAGTCCCCAAAGTCAAAGAC
* * *
3443545 GATAGGCAGACTTGAGGTAAGGCAGTTTCTAGGGTCAAAGCTAACAGGCAGACTTAAGGTAAGAA
66 GACAGGCAGACTTGAGGTAAGGCAGTCTCTAGGGTCAAAGCCAACAGGCAGACTTAAGGTAAGAA
* * *
3443610 AGTCTTTAGGGTCAAAGTCGACAGACAGACTTGAGGTGAAGCAGTCTCCATGGTCCATGCCGAGA
131 AGTCTTCAGGGTCAAAGTCGACAGACAGACTTGAGGTGAAGCAGTCTCCAGGGTCAATGCCGAGA
* * * * *
3443675 GTCAAATTAAGGGTAAGAAAGTTTCAAGGGTTAAAGCCGACAGACAAACTTGAGATGAGGTAGTC
196 GGCAAACTAAAGGTAAGAAAGTTCCAAGGGTCAAAGCCGACAGACAAACTTGAGATGAGGTAGTC
* * * * *
3443740 TCTAAGGTTAAAACCAATAGGCAGACTGAAGGTAGGAAAGTCTCTAGGGTCAAAACCAACAAGCA
261 TCTAAGGTTAAAACCAATAAGCAGACTGAAGGTAGGAAAGTCACCAAGGTAAAAACCAACAAGCA
* *
3443805 AACTTGAGATGAAGCAATCCCAGGGTTAAAACTAACAGGCAGACATAAGGTTAGGCTATCTCCAA
326 AACTTGAGATGAAGCAATCCCAGGATCAAAACTAACAGGCAGACATAAGGTTAGGCTATCTCCAA
3443870 GGTCAAAGCC
391 GGTCAAAGCC
3443880 GATAGCCAAA
Statistics
Matches: 718, Mismatches: 157, Indels: 47
0.78 0.17 0.05
Matches are distributed among these distances:
497 61 0.08
498 626 0.87
499 25 0.03
500 6 0.01
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (497 bp):
GAGGTAAGGTAGGGTCAAAGCCAATAGGTAGACTTGAGGGTAAGAAAGTCCCCAAAGTCAAAGAC
GACAGGCAGACTTGAGGTAAGGCAGTCTCTAGGGTCAAAGCCAACAGGCAGACTTAAGGTAAGAA
AGTCTTCAGGGTCAAAGTCGACAGACAGACTTGAGGTGAAGCAGTCTCCAGGGTCAATGCCGAGA
GGCAAACTAAAGGTAAGAAAGTTCCAAGGGTCAAAGCCGACAGACAAACTTGAGATGAGGTAGTC
TCTAAGGTTAAAACCAATAAGCAGACTGAAGGTAGGAAAGTCACCAAGGTAAAAACCAACAAGCA
AACTTGAGATGAAGCAATCCCAGGATCAAAACTAACAGGCAGACATAAGGTTAGGCTATCTCCAA
GGTCAAAGCCAACAGGCAAACTACAGATAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGACTA
AAAGTAAAAAAATCTCGAGGGTCAAAGTCGAAAGGCAGACCT
Found at i:3443605 original size:120 final size:119
Alignment explanation
Indices: 3443371--3443607 Score: 298
Period size: 120 Copynumber: 2.0 Consensus size: 119
3443361 GGCTATCTCC
*
3443371 AGGGTCAAAGCCAATAGGCAGACTACAGGTAAGAAAGTCTCCAAGGTCAAAGCCGACAAGCAGAC
1 AGGGTCAAAGCCAATAGGCAGACTACAGGTAAGAAAGTCTCCAAGGTCAAAGACGACAAGCAGAC
* * *
3443436 TTGAGGTGAGGTAGTCTTTAGGGTCAAAGTCGAAAGGCAGACCTGAGGTAAGGT
66 TTGAGGTAAGGCAGTCTTTAGGGTCAAAGTCGAAAGGCAGACCTAAGGTAAGGT
* * ** * * * * *
3443490 AGGGTGAAAGCCAATAGGTAGACTTGAGGGTAAGAAAGTCTCTAGGGTCAAAGATGATAGGCAGA
1 AGGGTCAAAGCCAATAGGCAGACTACA-GGTAAGAAAGTCTCCAAGGTCAAAGACGACAAGCAGA
* *
3443555 CTTGAGGTAAGGCAGT-TTCTAGGGTCAAAG-CTAACAGGCAGACTTAAGGTAAG
65 CTTGAGGTAAGGCAGTCTT-TAGGGTCAAAGTCGAA-AGGCAGACCTAAGGTAAG
3443608 AAAGTCTTTA
Statistics
Matches: 100, Mismatches: 15, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
119 28 0.28
120 72 0.72
ACGTcount: A:0.35, C:0.15, G:0.32, T:0.19
Consensus pattern (119 bp):
AGGGTCAAAGCCAATAGGCAGACTACAGGTAAGAAAGTCTCCAAGGTCAAAGACGACAAGCAGAC
TTGAGGTAAGGCAGTCTTTAGGGTCAAAGTCGAAAGGCAGACCTAAGGTAAGGT
Found at i:3443926 original size:32 final size:32
Alignment explanation
Indices: 3443890--3443953 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
3443880 GATAGCCAAA
3443890 TTGAAGGTAAAAAAGTCT-TCAGGGTCAAAGCC
1 TTGAAGGTAAAAAAGTCTCT-AGGGTCAAAGCC
*
3443922 TTGAAGGTAAGAAAGTCTCTAGGGTCAAAGCC
1 TTGAAGGTAAAAAAGTCTCTAGGGTCAAAGCC
3443954 GACAAGCAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.22
Consensus pattern (32 bp):
TTGAAGGTAAAAAAGTCTCTAGGGTCAAAGCC
Found at i:3444062 original size:157 final size:156
Alignment explanation
Indices: 3443766--3444078 Score: 341
Period size: 157 Copynumber: 2.0 Consensus size: 156
3443756 ATAGGCAGAC
* *
3443766 TGAAGGTAGGAAAGTCTCTAGGGTCAAAACCAACAAGCAAACTTGAGATGAAGCAATCCCAGGGT
1 TGAAGGTAAGAAAGTCTCTAGGGTCAAAACCAACAAGCAAACTTGAGATGAAGCAATCCCAAGGT
* * *
3443831 TAAAACTAACAGGCAGACATAAGGTTAGGCTATCTCCAAGGTCAAAGCCGATAGCCAAATTGAAG
66 CAAAACTAACAGGCAGACATAAGGTTAGGCTATCCCCAAGGTCAAAGCCGATAGCCAAA-TCAAG
3443896 GTAAAAAAGTCTTC-AGGGTCAAAGCCT
130 GTAAAAAAGTC-TCAAGGGTCAAAGCCT
* * * * *
3443923 TGAAGGTAAGAAAGTCTCTAGGGTCAAAGCCGACAAGCAAACTTGA-AGTGAGGTACTCTCCAAG
1 TGAAGGTAAGAAAGTCTCTAGGGTCAAAACCAACAAGCAAACTTGAGA-TGAAGCAATC-CCAAG
* *** * * * *
3443987 GTCAAAGCTGAA-AGGCAGAC-TTTTGTTGAGGC-AGTCCCCAAGGTGAAAGTCGATAGGCAGA-
64 GTCAAAACT-AACAGGCAGACATAAGGTT-AGGCTA-TCCCCAAGGTCAAAGCCGATAGCCAAAT
*
3444048 CAAGAGTAAGAAAGTCTCAAGGGTCAAAGCC
126 CAAG-GTAAAAAAGTCTCAAGGGTCAAAGCC
3444079 AACAGGCAAA
Statistics
Matches: 130, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
156 6 0.05
157 77 0.59
158 45 0.35
159 2 0.02
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.18
Consensus pattern (156 bp):
TGAAGGTAAGAAAGTCTCTAGGGTCAAAACCAACAAGCAAACTTGAGATGAAGCAATCCCAAGGT
CAAAACTAACAGGCAGACATAAGGTTAGGCTATCCCCAAGGTCAAAGCCGATAGCCAAATCAAGG
TAAAAAAGTCTCAAGGGTCAAAGCCT
Found at i:3445302 original size:83 final size:83
Alignment explanation
Indices: 3445118--3445359 Score: 207
Period size: 83 Copynumber: 2.9 Consensus size: 83
3445108 TAGGTAGACT
* * * * * * * * *
3445118 TGAGGGTAATAAAGTTTCTAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGCAGTTTCCAGGG
1 TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCGACAAGCAAACGTGAGATGAGGCAGTCTCCAGGG
* * ** * * *
3445183 TTAGAGTTGACAGGCAGAC
66 TCAAAGCCGAGAGTCA-AA
* * * * * * * *
3445202 TTAGGGTAAGAAGGTCTCCAA-GTTCAAAGTCGACAAGCAGACGTGAGGTTAGGCAGTCTCCATG
1 TGAGGGTAAGAAAGTCT-CAAGGGTCAAAGCCGACAAGCAAACGTGAGATGAGGCAGTCTCCAGG
*
3445266 GTCAATGCCGAGAGTCAAA
65 GTCAAAGCCGAGAGTCAAA
* * *
3445285 TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCGACAAGCAAACTTGAGATGAGGTAGTCTCTAGGG
1 TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCGACAAGCAAACGTGAGATGAGGCAGTCTCCAGGG
3445350 TCAAAGCCGA
66 TCAAAGCCGA
3445360 CAGGCAGACT
Statistics
Matches: 121, Mismatches: 35, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
82 3 0.02
83 60 0.50
84 56 0.46
85 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.31, T:0.20
Consensus pattern (83 bp):
TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCGACAAGCAAACGTGAGATGAGGCAGTCTCCAGGG
TCAAAGCCGAGAGTCAAA
Found at i:3445425 original size:167 final size:167
Alignment explanation
Indices: 3445118--3445426 Score: 361
Period size: 167 Copynumber: 1.9 Consensus size: 167
3445108 TAGGTAGACT
* * * * * * *
3445118 TGAGGGTAATAAAGTTTCTAGGGTCAAAGCCAACAGGTAGACTTGAGATGAGGCAGTTTCCAGGG
1 TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCAACAAGCAAACTTGAGATGAGGCAGTCTCCAGGG
* * ** * * ** *
3445183 TTAGAGTTGACAGGCAGACTTAGGGTAAGAAGGTCTCCAAGTTCAAAGTCGACAAGCAGACGTGA
66 TCAAAGCCGACAGGCAGACTTAGGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGACGTGA
* *
3445248 GGTTAGGCAGTCTCCATGGTCAATGCCGAGAGTCAAA
131 GATGAGGCAGTCTCCATGGTCAATGCCGAGAGTCAAA
* * *
3445285 TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCGACAAGCAAACTTGAGATGAGGTAGTCTCTAGGG
1 TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCAACAAGCAAACTTGAGATGAGGCAGTCTCCAGGG
* * * *
3445350 TCAAAGCCGACAGGCAGAC-TATGGGT-AGAAAAGTCTCTAAGGTCAAAACCAATAGGCAGACTT
66 TCAAAGCCGACAGGCAGACTTA-GGGTAAG-AAAGTCTCCAAGGTCAAAACCAACAAGCAGACGT
3445413 GAGATGAGGCAGTC
129 GAGATGAGGCAGTC
3445427 CCTAGGATTA
Statistics
Matches: 115, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
166 4 0.03
167 111 0.97
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (167 bp):
TGAGGGTAAGAAAGTCTCAAGGGTCAAAGCCAACAAGCAAACTTGAGATGAGGCAGTCTCCAGGG
TCAAAGCCGACAGGCAGACTTAGGGTAAGAAAGTCTCCAAGGTCAAAACCAACAAGCAGACGTGA
GATGAGGCAGTCTCCATGGTCAATGCCGAGAGTCAAA
Found at i:3453589 original size:41 final size:41
Alignment explanation
Indices: 3453515--3453622 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 41
3453505 GCGAACTGAG
*
3453515 GGTAAGAAAGTCTCTAGTGTCAAAGCAACAGGCAGACTGGA
1 GGTAAGAAAGTCTCTAGTGTCAAAGCAACAGGCAGACTCGA
* * * * *
3453556 GGTAAGAAGGTTTTTAG-GTCAAAGCTAATAGGCAGACTCTA
1 GGTAAGAAAGTCTCTAGTGTCAAAGC-AACAGGCAGACTCGA
** * *
3453597 GGTAAGGTATTCTCTAGGGTCAAAGC
1 GGTAAGAAAGTCTCTAGTGTCAAAGC
3453623 CGACACGCAG
Statistics
Matches: 53, Mismatches: 12, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
40 8 0.15
41 37 0.70
42 8 0.15
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (41 bp):
GGTAAGAAAGTCTCTAGTGTCAAAGCAACAGGCAGACTCGA
Found at i:3454597 original size:204 final size:204
Alignment explanation
Indices: 3454229--3454602 Score: 502
Period size: 204 Copynumber: 1.8 Consensus size: 204
3454219 GAAGTGAGGC
* *
3454229 AGTCTCTAGGGTCAAATTCGAGAAGCAGACTGAGGGTAAGAAAGTCTCCATGGTCAAAGCTGACA
1 AGTCTCTAGGGTCAAAGTCGAGAAGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCTGACA
* *
3454294 AGCAGACTTGAGGTGAGGAAGTCTCCAAGGTCAAAGTCGACACGCAGACTAAAGGTAAGAAAGTC
66 AGCAGACTTGAGGTGAGGAAGTCTCCAAGGTCAAAATCGACAAGCAGACTAAAGGTAAGAAAGTC
* *
3454359 TCCAAGGTCAAAGCCCACAAGCAGACTCGAGGTGAGGTAGGGTTAAAGCCGCCAAGATGACTAGA
131 TCCAAGGTCAAAGACCACAAGCAGAATCGAGGTGAGGTAGGGTTAAAGCCGCCAAGATGACTAGA
3454424 AGGTAAGAA
196 AGGTAAGAA
* * * *
3454433 AGTCTCTAGGGTCAAAGTCGATAGGCAGACTGAGGGTAAGAAAGTCTCCAGGGTTAAA-TTCGAC
1 AGTCTCTAGGGTCAAAGTCGAGAAGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCT-GAC
** * * * * * *
3454497 CGGTAGACTTGAGGTGAAGG-AGTCTCTAGGGTCAAAATTGACAAGCAGACTGAAGGTAAGAATG
65 AAGCAGACTTGAGGTG-AGGAAGTCTCCAAGGTCAAAATCGACAAGCAGACTAAAGGTAAGAAAG
* * * *
3454561 TCTCTAAGGTCAAGGACGA-AAGGCAGAATTGAGGTGAGGTAG
129 TCTCCAAGGTCAAAGACCACAA-GCAGAATCGAGGTGAGGTAG
3454603 TCTTGAGGGT
Statistics
Matches: 145, Mismatches: 22, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
203 3 0.02
204 139 0.96
205 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.18
Consensus pattern (204 bp):
AGTCTCTAGGGTCAAAGTCGAGAAGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCTGACA
AGCAGACTTGAGGTGAGGAAGTCTCCAAGGTCAAAATCGACAAGCAGACTAAAGGTAAGAAAGTC
TCCAAGGTCAAAGACCACAAGCAGAATCGAGGTGAGGTAGGGTTAAAGCCGCCAAGATGACTAGA
AGGTAAGAA
Found at i:3454788 original size:170 final size:170
Alignment explanation
Indices: 3454551--3454859 Score: 404
Period size: 170 Copynumber: 1.8 Consensus size: 170
3454541 GCAGACTGAA
* * ** *
3454551 GGTAAGAATGTCTCTAAGGTCAAGGACGAAAGGCAGAATTGAGGTGAGGTAGTCTTGAGGGTCAA
1 GGTAAGAATGTCTCTAAGGTCAAAGACGAAAGGCAGAATTGAGGTGAGGTAATCTCCAAGGTCAA
* * * *
3454616 AGCCGAGAGGCAAACT-AAGGTTAAGAAAGTCTCCAAGGTGAAAACCAATAGGCAAACTTGAGAT
66 AGCAGAGAGGCAAACTAAAGG-TAAGAAAATCTCCAAGGTCAAAACCAACAGGCAAACTTGAGAT
3454680 GAGGTAGTCTTCAACGTTTTAAAGCAAATAAGAAGACATAG
130 GAGGTAGTCTTCAACGTTTTAAAGCAAATAAGAAGACATAG
* * * * * * *
3454721 GGTAAGAATGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGGTTATGTAATCTCCAAGTTCAA
1 GGTAAGAATGTCTCTAAGGTCAAAGACGAAAGGCAGAATTGAGGTGAGGTAATCTCCAAGGTCAA
* * * ** *
3454786 AGCAGATAGGTAAACTAAAGGTAAGAAAATCTCTAAGGTCAAAGTCAACAGGCAGACTTGAGATG
66 AGCAGAGAGGCAAACTAAAGGTAAGAAAATCTCCAAGGTCAAAACCAACAGGCAAACTTGAGATG
3454851 AGGTAGTCT
131 AGGTAGTCT
3454860 CTAGGGTCCA
Statistics
Matches: 116, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
170 112 0.97
171 4 0.03
ACGTcount: A:0.37, C:0.15, G:0.27, T:0.21
Consensus pattern (170 bp):
GGTAAGAATGTCTCTAAGGTCAAAGACGAAAGGCAGAATTGAGGTGAGGTAATCTCCAAGGTCAA
AGCAGAGAGGCAAACTAAAGGTAAGAAAATCTCCAAGGTCAAAACCAACAGGCAAACTTGAGATG
AGGTAGTCTTCAACGTTTTAAAGCAAATAAGAAGACATAG
Found at i:3455544 original size:205 final size:205
Alignment explanation
Indices: 3455267--3455639 Score: 462
Period size: 205 Copynumber: 1.8 Consensus size: 205
3455257 GGAGTGAGGC
* *
3455267 AGTCTCCAGGGTCAAAGTCGAGAAGTAGACTGAGGGTAAGAAAGTCTCCATGGTCAAAGCTAACA
1 AGTCTCCAGGGTCAAAGTCGAGAAGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCTAACA
* * ** *
3455332 TGTAGACTTGAGGTGTGGAAGTCACCAAAGTCAAAGTCGACAGGCAGACAGAAAGTATGAAA-GT
66 GGTAGACTTAAGGTGAAGAAGTCACCAAAGTCAAAGTCGACAGGCAGACAGAAAGTA-AAAATGT
* *
3455396 CTCTAGGGTCAAAGCCGATAGGCAGACTCGAGGTGAGGCAGGGTTAAATCCAGCAGGATGACTAA
130 CTCTAGGGTCAAAACCGACAGGCAGACTCGAGGTGAGGCAGGGTTAAATCCAGCAGGATGACTAA
3455461 AAGGTAAGAAA
195 AAGGTAAGAAA
* * * * * *
3455472 AGTCTCTAGGGTCAAAGTCGATAGGCAGATTGAGGGTAAGAAAGTCTCTAGGGTCAAAG-TCGAC
1 AGTCTCCAGGGTCAAAGTCGAGAAGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCT-AAC
* * * * ** * * **
3455536 CGGTAGACTTAAGGTGAAGTAGTCTCTAGGGTCAAAGTCGATAGGCAGACTGAGGGTAAAAATGT
65 AGGTAGACTTAAGGTGAAGAAGTCACCAAAGTCAAAGTCGACAGGCAGACAGAAAGTAAAAATGT
* * *
3455601 CTCTAGGGTTAAAACCGACAGGCAGAGTTGAGGTGAGGC
130 CTCTAGGGTCAAAACCGACAGGCAGACTCGAGGTGAGGC
3455640 TGTCTTGAGG
Statistics
Matches: 138, Mismatches: 28, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
204 4 0.03
205 134 0.97
ACGTcount: A:0.34, C:0.16, G:0.31, T:0.19
Consensus pattern (205 bp):
AGTCTCCAGGGTCAAAGTCGAGAAGCAGACTGAGGGTAAGAAAGTCTCCAGGGTCAAAGCTAACA
GGTAGACTTAAGGTGAAGAAGTCACCAAAGTCAAAGTCGACAGGCAGACAGAAAGTAAAAATGTC
TCTAGGGTCAAAACCGACAGGCAGACTCGAGGTGAGGCAGGGTTAAATCCAGCAGGATGACTAAA
AGGTAAGAAA
Found at i:3456150 original size:35 final size:35
Alignment explanation
Indices: 3456111--3456180 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
3456101 TTGTCTCTAC
*
3456111 GGTCAAAGCCGACAGGTAGACTTGAGGTGAGGTAG
1 GGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAG
3456146 GGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAG
1 GGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAG
3456181 TCTTGAGGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.29, C:0.16, G:0.40, T:0.16
Consensus pattern (35 bp):
GGTCAAAGCCGACAGGCAGACTTGAGGTGAGGTAG
Found at i:3456586 original size:204 final size:204
Alignment explanation
Indices: 3456347--3456720 Score: 484
Period size: 204 Copynumber: 1.8 Consensus size: 204
3456337 GAAGTGAGGT
* * *
3456347 AGTCTCCAGGGTCAAAGTCGAGAAGTAGACTAAGGGTAAGAAAGTCTCCATGGTTAAAG-CTGAC
1 AGTCTCCAGGGTCAAAGTCGAGAAGTAGACTAAGGGTAAAAAAGTCTCCAGGGTCAAAGTC-GA-
* * * *
3456411 AAG-CAGACTTAAGTTGAGGAAGTCTCCAAGGTCAAAG-TCGATAGGCAGACTGAAGGTAAGAAA
64 AAGACAGACTCAAGGTGAAGAAGTCTCCAAGGTCAAAGCT-GATAGGCAGAATGAAGGTAAGAAA
*
3456474 GTCTCCAAGGTCAAAGCCGATAGGCAAACTTGAGGTGAGGTAGGGTTAAAGCCGGCAGGATGACT
128 GTCTCCAAGGTCAAAGCCGACAGGCAAACTTGAGGTGAGGTAGGGTTAAAGCCGGCAGGATGACT
3456539 AGCAAGTAAGAA
193 AGCAAGTAAGAA
* * **
3456551 AGTCTCTAGGGTCAAAGTCGATAAGTAGACTAAGGGTAAAAAAGTCTCCAGGGTCAAAGTCGATG
1 AGTCTCCAGGGTCAAAGTCGAGAAGTAGACTAAGGGTAAAAAAGTCTCCAGGGTCAAAGTCGAAA
* * * * * * *
3456616 GATAGACTCGAGGTGAAGTAGTCTCTAGGGTCAAAGCTGATAGGCAGAATGAGGGTAAGAATGTC
66 GACAGACTCAAGGTGAAGAAGTCTCCAAGGTCAAAGCTGATAGGCAGAATGAAGGTAAGAAAGTC
* * * * *
3456681 TCCAGGGTCAAAGCTGACAGGCAGAGTTGATGTGAGGTAG
131 TCCAAGGTCAAAGCCGACAGGCAAACTTGAGGTGAGGTAG
3456721 TCTTGAGGGT
Statistics
Matches: 143, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
203 1 0.01
204 140 0.98
205 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.20
Consensus pattern (204 bp):
AGTCTCCAGGGTCAAAGTCGAGAAGTAGACTAAGGGTAAAAAAGTCTCCAGGGTCAAAGTCGAAA
GACAGACTCAAGGTGAAGAAGTCTCCAAGGTCAAAGCTGATAGGCAGAATGAAGGTAAGAAAGTC
TCCAAGGTCAAAGCCGACAGGCAAACTTGAGGTGAGGTAGGGTTAAAGCCGGCAGGATGACTAGC
AAGTAAGAA
Found at i:3458134 original size:83 final size:83
Alignment explanation
Indices: 3457993--3458154 Score: 200
Period size: 83 Copynumber: 2.0 Consensus size: 83
3457983 GCCGACGGGC
* * **
3457993 AGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACTGGCAGACTGAGGGTAAGAAAGTCTCT
1 AGACTTGAGATGAAGCAGTCTCCAAGGTCAAAGCCGACTAGCAGACTGAAAGTAAGAAAGTCTCT
3458058 AGGGTCAAAGCTGAATAT
66 AGGGTCAAAGCTGAATAT
* * * * * * *
3458076 AGACTTGAGGTTAAGCAGTCTCCAAGGTCAAGGCTGA-TAAGTAGACTGAAAGTGAGAAAGTTTC
1 AGACTTGAGATGAAGCAGTCTCCAAGGTCAAAGCCGACT-AGCAGACTGAAAGTAAGAAAGTCTC
*
3458140 TAGGGTTAAAGCTGA
65 TAGGGTCAAAGCTGA
3458155 TAGGCGGACT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
82 1 0.02
83 65 0.98
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (83 bp):
AGACTTGAGATGAAGCAGTCTCCAAGGTCAAAGCCGACTAGCAGACTGAAAGTAAGAAAGTCTCT
AGGGTCAAAGCTGAATAT
Found at i:3458376 original size:209 final size:209
Alignment explanation
Indices: 3457971--3458416 Score: 497
Period size: 209 Copynumber: 2.1 Consensus size: 209
3457961 TTGGAAAGTT
* * * * *
3457971 TCTAGAGTCAAAGCCGACGGGCAGACTTGAGATGAGGCAGTCTCCAAGGTCAAAGCCGACTGGCA
1 TCTAGGGTCAAAGCCGACAGGCAGACTTGAGATAAGGCAGTCTCCAAGGTCAAAGCCAACAGGCA
* * * * *
3458036 GACTGAGGGTAAGAAAGTCTCTAGGGTCAAAGCTGAATATAGACTTGAGGTTAAGCAGTCTCCAA
66 GACTGAGGGTAAGAAAGTCTCTAGGGTCAAAGCTCAATACAGACTTAAGATGAAGCAGTCTCCAA
* * * * * ** * *
3458101 GGTCAAGGCTGATAAGTAGACTGAAAGTGAGAAAGTTTCTAGGGTTAAAGCTGATAGGCGGACTT
131 GGTCAAAGCCGATAAGTAGACTGAAAGTAAAAAAGTCTCTAAAGTCAAAGCTGATAGGCAGACTT
*
3458166 GA-GGTGAGGTAGCC
196 GATGG-GAGGCAGCC
* * * * *
3458180 TCTAGGGTCAAAGCCAACAGGCAAACTTGAGATAAGGTAGTCTCCATGGTCAAAGTCAACAGGCA
1 TCTAGGGTCAAAGCCGACAGGCAGACTTGAGATAAGGCAGTCTCCAAGGTCAAAGCCAACAGGCA
* * * *
3458245 GAGTGAGGGTAGGAAAGTCTCTAGGGTCAAAGC-CAATAGGCAGACTTAAGATGAGGTAGTCT-C
66 GACTGAGGGTAAGAAAGTCTCTAGGGTCAAAGCTCAATA--CAGACTTAAGATGAAGCAGTCTCC
* * *
3458308 TAGGTCAAAGCCGATAGGTAGACT-AAGGGTAAAAAAAGTCTCTAAAGTCAAAGCTGAT-GGCAG
129 AAGGTCAAAGCCGATAAGTAGACTGAA-AGT-AAAAAAGTCTCTAAAGTCAAAGCTGATAGGCAG
*
3458371 ACTTGATGGGAGGCAGTC
192 ACTTGATGGGAGGCAGCC
* *
3458389 TTTACGGTCAAAGCCGACAGGCAGACTT
1 TCTAGGGTCAAAGCCGACAGGCAGACTT
3458417 AAGGTGAGGC
Statistics
Matches: 195, Mismatches: 37, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
208 6 0.03
209 150 0.77
210 39 0.20
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (209 bp):
TCTAGGGTCAAAGCCGACAGGCAGACTTGAGATAAGGCAGTCTCCAAGGTCAAAGCCAACAGGCA
GACTGAGGGTAAGAAAGTCTCTAGGGTCAAAGCTCAATACAGACTTAAGATGAAGCAGTCTCCAA
GGTCAAAGCCGATAAGTAGACTGAAAGTAAAAAAGTCTCTAAAGTCAAAGCTGATAGGCAGACTT
GATGGGAGGCAGCC
Found at i:3459341 original size:125 final size:125
Alignment explanation
Indices: 3459170--3459488 Score: 299
Period size: 125 Copynumber: 2.6 Consensus size: 125
3459160 GAGGTGAGGC
* * * * * ** * *
3459170 AGTCTCCAGGGTCAAAGCCAACAGGCAG-TTTGAGGGTAAGAAAGTC-TAAGGGTCAAAGTCGAT
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGA-GATGAGGCAGTCTTAAGGGTAAAAGTCGAC
* *** * *
3459233 AGGCAAACTTGAGATGCGATAGTC-TCTAGGGTCAAAGTTGAGAGG-A-ATGCTGAAGGTAAGAA
65 AAGCAAAC-TGAGATAAAAAAGTCTTC-AGGGTCAAAGCTGAGAGGCAGAT--TGAAGGTAAGAA
** * * *
3459295 AGTCTCTAGGGTCAAAGTTGACAGGCAGACTTGAGGTGAGGCAGTCTTTAGGGTAAAAGTTGACA
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTTAAGGGTAAAAGTCGACA
* * *
3459360 AGCAAACTGAGGTAAAAAAGTCTTCAGGGTCAAAGCTGATAGGCAGATTGAGGGTAAGAA
66 AGCAAACTGAGATAAAAAAGTCTTCAGGGTCAAAGCTGAGAGGCAGATTGAAGGTAAGAA
* * * *
3459420 AGTCTCTAGGGTCAAAGCCGACATGCAGACTTGAGATGAGGCAGCCTTTAA-GGTTAAAGCCGAC
1 AGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTC-TTAAGGGTAAAAGTCGAC
3459484 AAGCA
65 AAGCA
3459489 GATTGAGGGT
Statistics
Matches: 158, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
125 126 0.80
126 30 0.19
127 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.20
Consensus pattern (125 bp):
AGTCTCTAGGGTCAAAGCCGACAGGCAGACTTGAGATGAGGCAGTCTTAAGGGTAAAAGTCGACA
AGCAAACTGAGATAAAAAAGTCTTCAGGGTCAAAGCTGAGAGGCAGATTGAAGGTAAGAA
Found at i:3459430 original size:83 final size:84
Alignment explanation
Indices: 3459092--3459436 Score: 231
Period size: 83 Copynumber: 4.1 Consensus size: 84
3459082 TGAGGTGAGG
* ** * * * * * *
3459092 TAGGGTCAAAGTTGATAGGTAGACTTAAGGGTAAGAAAGTCTCTAAGGTC-AAGCCGACAAGCAG
1 TAGGGTCAAAGTTGAAAGCAATACTGAA-GGTAAAAAAGTCTCTAGGGTCAAAGCTGACAGGCAG
* **
3459156 ACTTGAGGTGAGGCAGTCTC
65 ACTTGAGGTAAGAAAGTCTC
* ** * * * * * *
3459176 CAGGGTCAAAG-CCAACAGGCAGT-TTGAGGGTAAGAAAGTCT-AAGGGTCAAAG-TCGATAGGC
1 TAGGGTCAAAGTTGAA-A-GCAATACTGAAGGTAAAAAAGTCTCTAGGGTCAAAGCT-GACAGGC
* * ** *
3459237 AAACTTGAGATGCGATAGTCTC
63 AGACTTGAGGTAAGAAAGTCTC
* * * * *
3459259 TAGGGTCAAAGTTGAGAGGAATGCTGAAGGTAAGAAAGTCTCTAGGGTCAAAGTTGACAGGCAGA
1 TAGGGTCAAAGTTGAAAGCAATACTGAAGGTAAAAAAGTCTCTAGGGTCAAAGCTGACAGGCAGA
* ** *
3459324 CTTGAGGTGAGGCAGTCTT
66 CTTGAGGTAAGAAAGTCTC
* *
3459343 TAGGGTAAAAGTTGACAAGCAA-ACTG-AGGTAAAAAAGTCT-TCAGGGTCAAAGCTGATAGGCA
1 TAGGGTCAAAGTTGA-AAGCAATACTGAAGGTAAAAAAGTCTCT-AGGGTCAAAGCTGACAGGCA
3459405 GA-TTGAGGGTAAGAAAGTCTC
64 GACTTGA-GGTAAGAAAGTCTC
3459426 TAGGGTCAAAG
1 TAGGGTCAAAG
3459437 CCGACATGCA
Statistics
Matches: 201, Mismatches: 49, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
82 13 0.06
83 119 0.59
84 63 0.31
85 6 0.03
ACGTcount: A:0.34, C:0.14, G:0.31, T:0.21
Consensus pattern (84 bp):
TAGGGTCAAAGTTGAAAGCAATACTGAAGGTAAAAAAGTCTCTAGGGTCAAAGCTGACAGGCAGA
CTTGAGGTAAGAAAGTCTC
Found at i:3459902 original size:89 final size:89
Alignment explanation
Indices: 3459745--3460033 Score: 357
Period size: 89 Copynumber: 3.2 Consensus size: 89
3459735 TAGGTAAAAG
* * * * * * *
3459745 GGGATATTATTAAGAATGTGTGGGCT-ACACCTTGCCCCAAGGTAATCAGGCTTTGTGATGCGTT
1 GGGATATGATTAGGAATGTGTGGGCTGA-ACCTTGCCCCTAGGAAATCAAGCTTTGTGATGCATC
*
3459809 AATACCATCTAAGGGTTGAGTGAAG
65 AATACCATCTAAGGGTTGAGTGAAA
* * * *
3459834 GGGATATGATTAGGAATGTGTGGGTTGAACCTTGCCCTTAGGAAATCAAGCTTCGTGATACATCA
1 GGGATATGATTAGGAATGTGTGGGCTGAACCTTGCCCCTAGGAAATCAAGCTTTGTGATGCATCA
*
3459899 ATACCATCT-AGTGGTTGGGTGAAA
66 ATACCATCTAAG-GGTTGAGTGAAA
* * * * *
3459923 GGAATATGATTGGGAATGTGTGGGCTGCACCTTTCCCCTAGGAAACCAAGCTTTGTGATGCATCA
1 GGGATATGATTAGGAATGTGTGGGCTGAACCTTGCCCCTAGGAAATCAAGCTTTGTGATGCATCA
*
3459988 ATACCATCTAAGGGCTGAGTGAAA
66 ATACCATCTAAGGGTTGAGTGAAA
*
3460012 GGGATATGATTAAGAAATGTGT
1 GGGATATGATT-AGGAATGTGT
3460034 TTTGCTTAAA
Statistics
Matches: 169, Mismatches: 27, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
88 2 0.01
89 156 0.92
90 11 0.07
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (89 bp):
GGGATATGATTAGGAATGTGTGGGCTGAACCTTGCCCCTAGGAAATCAAGCTTTGTGATGCATCA
ATACCATCTAAGGGTTGAGTGAAA
Found at i:3469797 original size:22 final size:22
Alignment explanation
Indices: 3469771--3469867 Score: 117
Period size: 22 Copynumber: 4.4 Consensus size: 22
3469761 GTCTTTGCTT
*
3469771 TTGCTTGCTGTTTCTTCTTTTT
1 TTGCTTGCTGTTTCTTCTTTTC
3469793 TTGCTT-CATGTTTCTTCTTTTC
1 TTGCTTGC-TGTTTCTTCTTTTC
* *
3469815 TTGCTTGATGTTTCTTCTTTCC
1 TTGCTTGCTGTTTCTTCTTTTC
* *
3469837 TTGCTTACTGTTTCATT-TTTCC
1 TTGCTTGCTGTTTC-TTCTTTTC
3469859 TTGCTTGCT
1 TTGCTTGCT
3469868 ATTTTGGTTT
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
21 1 0.02
22 63 0.95
23 2 0.03
ACGTcount: A:0.04, C:0.22, G:0.12, T:0.62
Consensus pattern (22 bp):
TTGCTTGCTGTTTCTTCTTTTC
Found at i:3470244 original size:20 final size:20
Alignment explanation
Indices: 3470216--3470290 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
3470206 TTTTACCCTG
3470216 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
3470236 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * * *
3470256 ATGTATCAATATATTCTGCA
1 ATGTATCGATACATTTTTCA
3470276 ATGTATCGATACATT
1 ATGTATCGATACATT
3470291 ATGTCTTTTT
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:3470283 original size:40 final size:39
Alignment explanation
Indices: 3470216--3470293 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
3470206 TTTTACCCTG
* * *
3470216 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCAATACATTCTGCAATATATCGATACAT-TATGA
* *
3470256 ATGTATCAATATATTCTGCAATGTATCGATACATTATG
1 ATGTATCAATACATTCTGCAATATATCGATACATTATG
3470294 TCTTTTTACG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCAATACATTCTGCAATATATCGATACATTATGA
Found at i:3473081 original size:21 final size:21
Alignment explanation
Indices: 3473057--3473134 Score: 147
Period size: 21 Copynumber: 3.7 Consensus size: 21
3473047 AAAAAATTTA
3473057 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
3473078 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
3473099 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
3473120 AATGTATCGATACAT
1 AATGTATCGATACAT
3473135 CCTACAAATG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 56 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:3473145 original size:42 final size:42
Alignment explanation
Indices: 3473056--3473154 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
3473046 AAAAAAATTT
**
3473056 AAATGTATCGATACATTTGTAGAATGTATCGATACATTTGTA
1 AAATGTATCGATACATTTGTAGAATGTATCGATACATTCCTA
* *
3473098 GAATGTATCGATACATTTGTGGAATGTATCGATACA-TCCTA
1 AAATGTATCGATACATTTGTAGAATGTATCGATACATTCCTA
3473139 CAAATGTATCGATACA
1 -AAATGTATCGATACA
3473155 GGGTCCCAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 3 0.06
42 48 0.94
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.34
Consensus pattern (42 bp):
AAATGTATCGATACATTTGTAGAATGTATCGATACATTCCTA
Found at i:3473214 original size:19 final size:19
Alignment explanation
Indices: 3473190--3473257 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
3473180 AATTCAACAA
3473190 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
3473209 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
3473224 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
3473241 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
3473258 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:3473229 original size:13 final size:13
Alignment explanation
Indices: 3473211--3473235 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3473201 ACATAAGTTT
3473211 TGTATCGATACAA
1 TGTATCGATACAA
3473224 TGTATCGATACA
1 TGTATCGATACA
3473236 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3473233 original size:32 final size:32
Alignment explanation
Indices: 3473192--3473254 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3473182 TTCAACAATT
*
3473192 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
3473224 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
3473255 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:3473315 original size:13 final size:13
Alignment explanation
Indices: 3473297--3473322 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3473287 CATTTTTCTG
3473297 TGTATCGATACAT
1 TGTATCGATACAT
3473310 TGTATCGATACAT
1 TGTATCGATACAT
3473323 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3473319 original size:33 final size:33
Alignment explanation
Indices: 3473277--3473343 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3473267 GCCAAGGAAA
***
3473277 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
3473310 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
3473343 T
1 T
3473344 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:3474016 original size:8 final size:8
Alignment explanation
Indices: 3474003--3474027 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
3473993 CCAAAAGCTA
3474003 CATCCTTT
1 CATCCTTT
3474011 CATCCTTT
1 CATCCTTT
3474019 CATCCTTT
1 CATCCTTT
3474027 C
1 C
3474028 CTTGCTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.40, G:0.00, T:0.48
Consensus pattern (8 bp):
CATCCTTT
Found at i:3475755 original size:51 final size:53
Alignment explanation
Indices: 3475686--3476135 Score: 199
Period size: 52 Copynumber: 8.5 Consensus size: 53
3475676 AGTTTATCAA
* * * * *
3475686 TTCTCCACAATCGAGGATATTCCAACTCCGATTTTATTTTC-AAAACACTAA-
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* *
3475737 TT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAAT
1 TTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAAACACCAAT
* * * *** * *
3475791 TTCTTCACAATCGGGGATACTCCAAC-CCCA-TTAATCATCGGGGATACTCCAACCCCGT
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAA-----T
* * ** *
3475849 TAT-TTC-CGA--GGGGATACTCCAACTCCGGTTTTATCGCAAAAAACACCAAT
1 T-TCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
* * * *** * *
3475899 TTCTTCACAATCGGGGATACTCCAAC-CCCA-TTAATCATCGGGGATACTCCAACCCCGT
1 TTCTTCACAATCGGGGATACTCCAACTCCGATTTTAT-TTC-CAAAAACACCAA-----T
* * *
3475957 TAT-TTC-CGA--GGGGATACTCCAACTCCGATTTTA--TCGCTAAAACACTAAT
1 T-TCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAAT
* * *
3476006 TT-TTCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAATT
1 TTCTT-CACAATCGGGGATACTCCAACTCC-GATTTTATTTCCAAAAACACCAA-T
* *
3476059 TTCCTT--TAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAAT
1 TT-CTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
*
3476111 TT-TTCACAATCGAGGATACTCCAAC
1 TTCTTCACAATCGGGGATACTCCAAC
3476136 CTCGTTATTT
Statistics
Matches: 296, Mismatches: 60, Indels: 85
0.67 0.14 0.19
Matches are distributed among these distances:
48 3 0.01
49 4 0.01
50 11 0.04
51 41 0.14
52 81 0.27
53 57 0.19
54 30 0.10
55 40 0.14
56 6 0.02
57 11 0.04
58 10 0.03
59 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.30
Consensus pattern (53 bp):
TTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAACACCAAT
Found at i:3475870 original size:28 final size:27
Alignment explanation
Indices: 3475803--3475871 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
3475793 CTTCACAATC
**
3475803 GGGGATACTCCAACCCCATTAATCATC
1 GGGGATACTCCAACCCCATTAATCAGA
* * *
3475830 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCATTA-ATCAGA
3475858 GGGGATACTCCAAC
1 GGGGATACTCCAAC
3475872 TCCGGTTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCATTAATCAGA
Found at i:3475912 original size:108 final size:107
Alignment explanation
Indices: 3475749--3476191 Score: 490
Period size: 108 Copynumber: 4.1 Consensus size: 107
3475739 TTCTATAATC
*
3475749 GGGGATACTCTAACTCCGATTTTATTTC-CAAAAAACACCAATTTCTTCACAATCGGGGATACTC
1 GGGGATACTCCAACTCCGATTTTA--TCGCAAAAAACACCAATTT-TTCACAATCGGGGATACTC
3475813 CAACCCCATTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
63 CAACCCCATTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
*
3475858 GGGGATACTCCAACTCCGGTTTTATCGCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGATTTTATCGCAAAAAACACCAATTT-TTCACAATCGGGGATACTCCA
3475923 ACCCCATTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
65 ACCCCATTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
* *
3475966 GGGGATACTCCAACTCCGATTTTATCGC-TAAAACACTAATTTTTCCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGATTTTATCGCAAAAAACACCAATTTTT-CACAATCGGGGATACTCCA
*** * ** * * * ** * *
3476030 ATCCTGGTTTTATTTTC---AAAACGCCAATTTTCCTTTA-AT-C--
65 A-CC-CCATTAATCATCGGGGATACTCCAA--CCCCGTTATTTCCGA
** * * *
3476070 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGATTTTATCGCAAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
* * * * *
3476135 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCTGA
66 CCCCATTA-ATCATCGGGGATACTCCAACCCCGTTATTTCCGA
3476178 GGGGATACTCCAAC
1 GGGGATACTCCAAC
3476192 CCCGGCTTTA
Statistics
Matches: 280, Mismatches: 39, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
102 2 0.01
103 5 0.02
104 50 0.18
105 14 0.05
106 17 0.06
107 35 0.12
108 129 0.46
109 28 0.10
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.29
Consensus pattern (107 bp):
GGGGATACTCCAACTCCGATTTTATCGCAAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
CCCCATTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
Found at i:3475978 original size:28 final size:27
Alignment explanation
Indices: 3475911--3475979 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
3475901 CTTCACAATC
**
3475911 GGGGATACTCCAACCCCATTAATCATC
1 GGGGATACTCCAACCCCATTAATCAGA
* * *
3475938 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCATTA-ATCAGA
3475966 GGGGATACTCCAAC
1 GGGGATACTCCAAC
3475980 TCCGATTTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 20 0.56
28 16 0.44
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCATTAATCAGA
Found at i:3476155 original size:28 final size:28
Alignment explanation
Indices: 3476119--3476195 Score: 102
Period size: 28 Copynumber: 2.8 Consensus size: 28
3476109 ATTTTTCACA
* * *
3476119 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
3476147 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
*
3476175 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
3476196 GCTTTATTCC
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:3476202 original size:108 final size:108
Alignment explanation
Indices: 3475749--3476252 Score: 481
Period size: 108 Copynumber: 4.7 Consensus size: 108
3475739 TTCTATAATC
* *
3475749 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCC
1 GGGGATACTCCAACTCCGGTTTTATTTCC-AAAAACACCAATTT-TTCACAATCGGGGATACTCC
* * *
3475814 AACCCCATTA-ATCATCGGGGATACTCCAACCCCGTTATTTCCGA
64 AACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
** *
3475858 GGGGATACTCCAACTCCGGTTTTATCGCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTT-TTCACAATCGGGGATACTCCA
* * *
3475923 ACCCCATTA-ATCATCGGGGATACTCCAACCCCGTTATTTCCGA
65 ACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
* * *
3475966 GGGGATACTCCAACTCCGATTTTA--TCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCC
1 GGGGATACTCCAACTCCGGTTTTATTTC-CAAAAACACCAATTTTT-CACAATCGGGGATACTCC
* * * ***** * * ** * *
3476029 AATCCTGGT-TTT-ATTTTCAAAACGCCAATTTTCCTTTA-AT-C--
64 AACCCCGTTATTTCATCGGGGATACTCCAA--CCCCGTTACTTCCGA
* * *
3476070 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATACTCCAA
1 GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
* *
3476135 CCTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCTGA
66 CCCCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
* * * * *** * * *
3476178 GGGGATACTCCAACCCCGGCTTTA-TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAA
1 GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
3476242 CCCCGTTATTT
66 CCCCGTTATTT
3476253 TCGAAGAGAT
Statistics
Matches: 324, Mismatches: 58, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
104 51 0.16
105 18 0.06
106 24 0.07
107 79 0.24
108 128 0.40
109 24 0.07
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (108 bp):
GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
CCCCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGA
Found at i:3479654 original size:20 final size:20
Alignment explanation
Indices: 3479631--3479668 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3479621 CAAAGCAATA
3479631 TGTATCGATACTTCTAAGTC
1 TGTATCGATACTTCTAAGTC
*
3479651 TGTATCGATACTTTTAAG
1 TGTATCGATACTTCTAAG
3479669 GGTTTTGACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.16, G:0.16, T:0.42
Consensus pattern (20 bp):
TGTATCGATACTTCTAAGTC
Found at i:3482896 original size:20 final size:19
Alignment explanation
Indices: 3482871--3482924 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 19
3482861 CTACCACTGT
3482871 TTGTATCGATACATG-GCACA
1 TTGTATCGATACATGAG-A-A
3482891 TTGTATCGATACATGAAGAA
1 TTGTATCGATACATG-AGAA
3482911 TTGTATCGATACAT
1 TTGTATCGATACAT
3482925 TGTCTCAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 30 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (19 bp):
TTGTATCGATACATGAGAA
Found at i:3485771 original size:32 final size:32
Alignment explanation
Indices: 3485730--3485854 Score: 198
Period size: 32 Copynumber: 3.9 Consensus size: 32
3485720 GGACTTAATA
*
3485730 TATCGATACATGAACAGTGATGAACAATGATT
1 TATCGATACATGAACAGTGATGAACAGTGATT
*
3485762 TATCGATACATGAACAGTGTTGAACAGTGA-T
1 TATCGATACATGAACAGTGATGAACAGTGATT
* * *
3485793 TATCGATACATGAATAGTGCTGAACAGTGATG
1 TATCGATACATGAACAGTGATGAACAGTGATT
3485825 TATCGATACATGAACAGTGATGAACAGTGA
1 TATCGATACATGAACAGTGATGAACAGTGA
3485855 AAATGAGATT
Statistics
Matches: 85, Mismatches: 7, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
31 29 0.34
32 56 0.66
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (32 bp):
TATCGATACATGAACAGTGATGAACAGTGATT
Found at i:3485829 original size:63 final size:63
Alignment explanation
Indices: 3485730--3485854 Score: 205
Period size: 63 Copynumber: 2.0 Consensus size: 63
3485720 GGACTTAATA
* *
3485730 TATCGATACATGAACAGTGATGAACAATGATTTATCGATACATGAACAGTGTTGAACAGTGAT
1 TATCGATACATGAACAGTGATGAACAATGATGTATCGATACATGAACAGTGATGAACAGTGAT
* * *
3485793 TATCGATACATGAATAGTGCTGAACAGTGATGTATCGATACATGAACAGTGATGAACAGTGA
1 TATCGATACATGAACAGTGATGAACAATGATGTATCGATACATGAACAGTGATGAACAGTGA
3485855 AAATGAGATT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (63 bp):
TATCGATACATGAACAGTGATGAACAATGATGTATCGATACATGAACAGTGATGAACAGTGAT
Found at i:3489121 original size:52 final size:52
Alignment explanation
Indices: 3489043--3489171 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
3489033 CGAAATATGA
3489043 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
* *
3489095 AAATTTGCCTGCATGTATCAATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
**
3489147 AAATTTTACTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
3489172 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:3489198 original size:13 final size:13
Alignment explanation
Indices: 3489180--3489204 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3489170 CAAAGATCAG
3489180 TGTATCGATACAA
1 TGTATCGATACAA
3489193 TGTATCGATACA
1 TGTATCGATACA
3489205 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3489282 original size:33 final size:33
Alignment explanation
Indices: 3489245--3489311 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3489235 AGTAGCTTAA
3489245 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
3489278 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
3489311 A
1 A
3489312 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:3489285 original size:13 final size:13
Alignment explanation
Indices: 3489267--3489291 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3489257 CAAAAAAATA
3489267 TGTATCGATACAT
1 TGTATCGATACAT
3489280 TGTATCGATACA
1 TGTATCGATACA
3489292 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3489731 original size:22 final size:21
Alignment explanation
Indices: 3489697--3489800 Score: 64
Period size: 22 Copynumber: 4.7 Consensus size: 21
3489687 TTAGTTTAAC
* *
3489697 TAAAGGTAAATATACATTCAGT
1 TAAAGTTATATATACATTCA-T
**
3489719 TAAAGTTATATATACAAGCTAT
1 TAAAGTTATATATACATTC-AT
* *
3489741 TATAGTTATATATATATATTCAAT
1 TAAAG-T-TATATATACATTC-AT
* **
3489765 TATAGTTATATATACAAGCTAT
1 TAAAGTTATATATACATTC-AT
*
3489787 TATAGTTATATATA
1 TAAAGTTATATATA
3489801 TATATATATA
Statistics
Matches: 66, Mismatches: 13, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
22 46 0.70
23 3 0.05
24 17 0.26
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (21 bp):
TAAAGTTATATATACATTCAT
Found at i:3489766 original size:24 final size:24
Alignment explanation
Indices: 3489739--3489837 Score: 101
Period size: 24 Copynumber: 3.9 Consensus size: 24
3489729 TATACAAGCT
3489739 ATTATAGTTATATATATATATTCA
1 ATTATAGTTATATATATATATTCA
*
3489763 ATTATAGTTATATATACAAGCTATT-A
1 ATTATAGTTATATATA-TA--TATTCA
*
3489789 TAGTTATATATATATATATATATATTCA
1 -A-TTATA-GT-TATATATATATATTCA
*
3489817 ATTATAGTTATATATGTATAT
1 ATTATAGTTATATATATATAT
3489838 AAAGTTTAAC
Statistics
Matches: 62, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
24 28 0.45
25 2 0.03
26 6 0.10
27 10 0.16
28 6 0.10
29 2 0.03
30 8 0.13
ACGTcount: A:0.41, C:0.04, G:0.06, T:0.48
Consensus pattern (24 bp):
ATTATAGTTATATATATATATTCA
Found at i:3489772 original size:46 final size:46
Alignment explanation
Indices: 3489706--3489805 Score: 173
Period size: 46 Copynumber: 2.2 Consensus size: 46
3489696 CTAAAGGTAA
* *
3489706 ATATACATTCAGTTAAAGTTATATATACAAGCTATTATAGTTATAT
1 ATATATATTCAATTAAAGTTATATATACAAGCTATTATAGTTATAT
*
3489752 ATATATATTCAATTATAGTTATATATACAAGCTATTATAGTTATAT
1 ATATATATTCAATTAAAGTTATATATACAAGCTATTATAGTTATAT
3489798 ATATATAT
1 ATATATAT
3489806 ATATATATTC
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.44
Consensus pattern (46 bp):
ATATATATTCAATTAAAGTTATATATACAAGCTATTATAGTTATAT
Found at i:3489812 original size:22 final size:22
Alignment explanation
Indices: 3489741--3489812 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
3489731 TACAAGCTAT
3489741 TATAGTTATATATATATAT-TCAA
1 TATAGTTATATATATATATAT--A
*
3489764 TTATAGTTATATATACA-AGCTAT-
1 -TATAGTTATATATATATA--TATA
3489787 TATAGTTATATATATATATATA
1 TATAGTTATATATATATATATA
3489809 TATA
1 TATA
3489813 TTCAATTATA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
21 3 0.07
22 19 0.46
23 2 0.05
24 15 0.37
25 1 0.02
26 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.06, T:0.47
Consensus pattern (22 bp):
TATAGTTATATATATATATATA
Found at i:3490766 original size:22 final size:22
Alignment explanation
Indices: 3490741--3490793 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
3490731 ATTAGTTTTT
* *
3490741 TTTTGTTTTAAGATTATTTTAG
1 TTTTATTTTAAGATTATATTAG
* *
3490763 TTTTATTTTTAGTTTATATTAG
1 TTTTATTTTAAGATTATATTAG
*
3490785 -TCTATTTTA
1 TTTTATTTTA
3490794 TTAATTATTT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (22 bp):
TTTTATTTTAAGATTATATTAG
Done.