Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold16
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5287347
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 8769 characters in sequence are not A, C, G, or T
File 24 of 35
Found at i:3592672 original size:43 final size:43
Alignment explanation
Indices: 3592443--3592672 Score: 172
Period size: 43 Copynumber: 5.1 Consensus size: 43
3592433 GGCATATTCT
* *
3592443 TTTAAGCCCAATATCGCTCGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATT---ACC---GCC
* * * ** *
3592492 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTACCGCC
* **
3592535 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAGCTTGGTT
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATT---A-C--CGCC
*** * * ** *
3592584 TTTAAGATTAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTACCGCC
*
3592627 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTACCGCC
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTACCGCC
3592670 TTT
1 TTT
3592673 GTCATCTTTA
Statistics
Matches: 139, Mismatches: 36, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
43 73 0.53
46 1 0.01
49 65 0.47
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (43 bp):
TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTACCGCC
Found at i:3592704 original size:52 final size:51
Alignment explanation
Indices: 3592626--3592966 Score: 284
Period size: 52 Copynumber: 6.7 Consensus size: 51
3592616 ACATTGGCAC
* *
3592626 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTACCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTTT-TCAT
* * * * * *
3592678 CTTTAAGTCCAATGTCGCCAGCCTTGAATCAACACATT-G-GCATCTTCAT
1 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTTTTCAT
** * * * *
3592727 CTTTAAGTCCGGTATCGCTGGCCTTTAATCAGCATATTAGCACCTTCGTCAT
1 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTT-TTCAT
* * * *
3592779 -TTTCAAGTCCAATGTCGCTAGCCTTGAATCAGCACATTGGCACC--TTCAT
1 CTTT-AAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTTTTCAT
* * * *
3592828 CTTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTCATCAT
1 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTT-TTCAT
* * * * * * *
3592880 CTTTCAA-ACCAATGTCACCAGCCTTGAATCAGCACATTGGCACC--TTCAT
1 CTTT-AAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTTTTCAT
* * * *
3592929 CCTTAAGTCCAATATCGTTGGCCTTGAATCAGCGTATT
1 CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATT
3592967 GGCATCTTTA
Statistics
Matches: 227, Mismatches: 52, Indels: 23
0.75 0.17 0.08
Matches are distributed among these distances:
48 2 0.01
49 103 0.45
50 8 0.04
51 5 0.02
52 107 0.47
53 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.32
Consensus pattern (51 bp):
CTTTAAGTCCAATATCGCTAGCCTTGAATCAGCATATTAGCGCCTTTTCAT
Found at i:3592764 original size:101 final size:100
Alignment explanation
Indices: 3592443--3593067 Score: 612
Period size: 101 Copynumber: 6.4 Consensus size: 100
3592433 GGCATATTCT
* * * * *
3592443 TTTAAGCCCAATATCGCTCGCCTTGAATCAGCATATTGGCACCTT--T-GTCTTTAAGACCAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATG
*
3592505 TCGCTGGCCTTGAATCAGCACATTGGCA---C--C
66 TCGCTAGCCTTGAATCAGCACATTGGCACTTCATC
* * *
3592535 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAG-CTTGGT--T-TTTAAGAT-TAA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC-GCCTTCGTCATCTTTAAG-TCCAA
*
3592595 TGTCGCTGGCCTTGAATCAGCACATTGGCA---C--C
64 TGTCGCTAGCCTTGAATCAGCACATTGGCACTTCATC
** *
3592627 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTACCGCCTTTGTCATCTTTAAGTCCAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATG
* *
3592692 TCGCCAGCCTTGAATCAACACATTGGCATCTTCATC
66 TCGCTAGCCTTGAATCAGCACATTGGCA-CTTCATC
** * * *
3592728 TTTAAGTCCGGTATCGCTGGCCTTTAATCAGCATATTAGCACCTTCGTCAT-TTTCAAGTCCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTT-AAGTCCAAT
3592792 GTCGCTAGCCTTGAATCAGCACATTGGCACCTTCATC
65 GTCGCTAGCCTTGAATCAGCACATTGGCA-CTTCATC
* * *
3592829 TTTAAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTCATCATCTTTCAA-ACCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTT-AAGTCCAAT
* *
3592893 GTCACCAGCCTTGAATCAGCACATTGGCACCTTCATC
65 GTCGCTAGCCTTGAATCAGCACATTGGCA-CTTCATC
* * * ** * * *
3592930 CTTAAGTCCAATATCGTTGGCCTTGAATCAGCGTATTGGCATCTT--TAATATTCCTAAGCCCAA
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTT--TAAGTCCAA
* ** **
3592993 TGTCGCTGGCCTTGCCTCAGCACATTGGCA-TTTTTC
64 TGTCGCTAGCCTTGAATCAGCACATTGGCACTTCATC
* * * * *
3593029 TTCAAGTCTAAATGTCGCTGGCCATGAATCAGCACATTG
1 TTTAAGTC-CAATATCGCTGGCCTTGAATCAGCATATTG
3593068 TCATTCTTCG
Statistics
Matches: 457, Mismatches: 55, Indels: 34
0.84 0.10 0.06
Matches are distributed among these distances:
91 1 0.00
92 124 0.27
93 1 0.00
94 3 0.01
95 35 0.08
99 16 0.04
100 29 0.06
101 242 0.53
102 6 0.01
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (100 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTCGTCATCTTTAAGTCCAATG
TCGCTAGCCTTGAATCAGCACATTGGCACTTCATC
Found at i:3594126 original size:33 final size:33
Alignment explanation
Indices: 3594081--3594377 Score: 265
Period size: 34 Copynumber: 9.1 Consensus size: 33
3594071 ACGGCACCCT
3594081 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
* * *
3594114 TTTAAAGCCCACAACTCCATGGCACTCTTTTTCTT
1 TTTAAAGTCCACAACTCCGTGGCA-TCTTTTTC-C
* *
3594149 TTTAAAGTCCACAACTCTGTGGCATCTCTTTCC
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
* **
3594182 TTCAAAGTCCACAACTCATTGGCATCCCTTTTTCC
1 TTTAAAGTCCACAACTCCGTGGCAT--CTTTTTCC
* *
3594217 TGT-AAGTCCACAACTCAGTGGCATCTTTTT--
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
* * * * * *
3594247 TCT-AGGTCCACGACTCTGTGGCACCTTTTTCTT
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTC-C
*
3594280 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTAAAGTCCACAACTCCGTGGCA-TCTTTTT-CC
* *
3594315 TTTTAAA-TCCATAACTCCGTGGCA-C--CTT--
1 -TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
*
3594343 TTT-AAGTCCACAACTCCGTGGCATCTTTCTCC
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
3594375 TTT
1 TTT
3594378 TCAAAAGCCC
Statistics
Matches: 214, Mismatches: 33, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
26 2 0.01
27 19 0.09
28 1 0.00
30 26 0.12
31 2 0.01
32 9 0.04
33 47 0.22
34 51 0.24
35 50 0.23
36 7 0.03
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (33 bp):
TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
Found at i:3594277 original size:29 final size:30
Alignment explanation
Indices: 3594155--3594278 Score: 106
Period size: 33 Copynumber: 3.9 Consensus size: 30
3594145 TCTTTTTAAA
* * *
3594155 GTCCACAACTCTGTGGCATCTCTTTCCTTCAAA
1 GTCCACAACTCAGTGGCATC-CTTT--TTCTAG
* *
3594188 GTCCACAACTCATTGGCATCCCTTTTTCCTGTAA
1 GTCCACAACTCAGTGGCAT-CCTTTTT-C--TAG
*
3594222 GTCCACAACTCAGTGGCATCTTTTTTCTAG
1 GTCCACAACTCAGTGGCATCCTTTTTCTAG
* *
3594252 GTCCACGACTCTGTGGCA-CCTTTTTCT
1 GTCCACAACTCAGTGGCATCCTTTTTCT
3594279 TTTTAAAGCC
Statistics
Matches: 78, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
29 8 0.10
30 18 0.23
31 2 0.03
32 2 0.03
33 27 0.35
34 21 0.27
ACGTcount: A:0.19, C:0.31, G:0.15, T:0.35
Consensus pattern (30 bp):
GTCCACAACTCAGTGGCATCCTTTTTCTAG
Found at i:3594347 original size:27 final size:27
Alignment explanation
Indices: 3594315--3594370 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
3594305 TCTTTTTCCC
*
3594315 TTTTAAATCCATAACTCCGTGGCACCT
1 TTTTAAATCCACAACTCCGTGGCACCT
* *
3594342 TTTTAAGTCCACAACTCCGTGGCATCT
1 TTTTAAATCCACAACTCCGTGGCACCT
3594369 TT
1 TT
3594371 CTCCTTTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.23, C:0.29, G:0.12, T:0.36
Consensus pattern (27 bp):
TTTTAAATCCACAACTCCGTGGCACCT
Found at i:3594400 original size:98 final size:97
Alignment explanation
Indices: 3594078--3594401 Score: 270
Period size: 97 Copynumber: 3.3 Consensus size: 97
3594068 TCCACGGCAC
* * * *
3594078 CCTTTT-AAAGTCCACAACTCCGTGGCAT--CTTTTTCCTTTAAAGCCCACAACTCCA-TGGCAC
1 CCTTTTCAAAGCCCACAACTCAGTGGCATCCCTTTTTCCTGTAAA-TCCACAACT-CAGTGGCA-
3594139 TCTTTTTCTTTTTAAAGTCCACAACTCTGTGGCATCTCTTT
63 TC----TCTTTTT-AAGTCCACAACTCTGTGGCATCT-TTT
* * *
3594180 CC--TTCAAAGTCCACAACTCATTGGCATCCCTTTTTCCTGTAAGTCCACAACTCAGTGGCATCT
1 CCTTTTCAAAGCCCACAACTCAGTGGCATCCCTTTTTCCTGTAAATCCACAACTCAGTGGCATCT
* * * *
3594243 TTTTTCTAGGTCCACGACTCTGTGGCACCTTTT
66 CTTTT-TAAGTCCACAACTCTGTGGCATCTTTT
* * * * * * *
3594276 TCTTTTTAAAGCCCACAACTCCGTGGCA-CTCTTTTTCCCTTTTAAATCCATAACTCCGTGGCA-
1 CCTTTTCAAAGCCCACAACTCAGTGGCATCCCTTTTT-CC-TGTAAATCCACAACTCAGTGGCAT
*
3594339 C-CTTTTTAAGTCCACAACTCCGTGGCATCTTTCT
64 CTCTTTTTAAGTCCACAACTCTGTGGCATCTTT-T
* *
3594373 CCTTTTCAAAAGCCCACAAGTTAGTGGCA
1 CCTTTTC-AAAGCCCACAACTCAGTGGCA
3594402 ACCTTCAAAA
Statistics
Matches: 182, Mismatches: 29, Indels: 26
0.77 0.12 0.11
Matches are distributed among these distances:
96 26 0.14
97 42 0.23
98 42 0.23
99 19 0.10
100 2 0.01
101 24 0.13
102 15 0.08
103 12 0.07
ACGTcount: A:0.22, C:0.31, G:0.13, T:0.35
Consensus pattern (97 bp):
CCTTTTCAAAGCCCACAACTCAGTGGCATCCCTTTTTCCTGTAAATCCACAACTCAGTGGCATCT
CTTTTTAAGTCCACAACTCTGTGGCATCTTTT
Found at i:3594547 original size:43 final size:43
Alignment explanation
Indices: 3594438--3594945 Score: 494
Period size: 43 Copynumber: 11.0 Consensus size: 43
3594428 GGCATATTCT
* *
3594438 TTTAAGCCCAATATCGCTCGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-----C
* *
3594487 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
3594530 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAGCTTGGTT
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-----C
** * *
3594579 TTTAAGATTAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* *
3594622 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTACCGCCTTTGTCATC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATT---G-----G-CACC
*
3594674 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* * * *
3594717 TTTAAGCCCGATATCGCTAGACTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-----C
* *
3594766 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
*
3594809 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCA-C-----C
* *
3594858 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
* * *
3594901 TTTAAGTCCAACATCGCTGGCTTTGAATCAGCATATTGGCACC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
3594944 TT
1 TT
3594946 CGTCATCTTC
Statistics
Matches: 387, Mismatches: 45, Indels: 60
0.79 0.09 0.12
Matches are distributed among these distances:
43 190 0.49
44 4 0.01
46 1 0.00
48 4 0.01
49 149 0.39
51 1 0.00
52 38 0.10
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (43 bp):
TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
Found at i:3594595 original size:92 final size:92
Alignment explanation
Indices: 3594438--3595097 Score: 899
Period size: 92 Copynumber: 7.0 Consensus size: 92
3594428 GGCATATTCT
* * *
3594438 TTTAAGCCCAATATCGCTCGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTTTTTAAGACCAATGTCG
3594503 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * * **
3594530 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCAGCTTGGTTTTTAAGATTAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTTTTTAAGACCAATGTCG
3594595 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
** *
3594622 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTACCGCCTTTGTCATCTTTAAGACCAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT--T-TTTAAGACCAATG
*
3594687 TCGCTGGCCTTGAATCAGCATATTGGCACC
63 TCGCTGGCCTTGAATCAGCACATTGGCACC
* * * * *
3594717 TTTAAGCCCGATATCGCTAGACTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTTTTTAAGACCAATGTCG
3594782 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
3594809 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTTTTTAAGACCAATGTCG
3594874 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
* * * * *
3594901 TTTAAGTCCAACATCGCTGGCTTTGAATCAGCATATTGGCACCTTCGTCATCTTCAAGTCCAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT--T-TTTAAGACCAATG
*
3594966 TCGCTGGCCTTGAATCAGCACATTGGAACCTTCATC
63 TCGCTGGCCTTGAATCAGCACATTGG------CACC
* * * *
3595002 TTTAAGTTCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTCAA-ACCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGT--T-TTT-AAGACCAAT
* *
3595066 GTCGCCGGCCTTGAATCAGCACATTAGCACC
62 GTCGCTGGCCTTGAATCAGCACATTGGCACC
3595097 T
1 T
3595098 GTCGTAACGT
Statistics
Matches: 510, Mismatches: 45, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
92 303 0.59
94 1 0.00
95 122 0.24
101 82 0.16
102 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (92 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTTTTTAAGACCAATGTCG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:3594718 original size:21 final size:21
Alignment explanation
Indices: 3594694--3594761 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
3594684 ATGTCGCTGG
3594694 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGCATATTGGCA
* * * *
3594715 CCTTTAAGC-CCGATA-TCGCTA
1 CCTTGAATCAGC-ATATTGGC-A
*
3594736 GACTTGAATCAGCATATTGGCA
1 -CCTTGAATCAGCATATTGGCA
3594758 CCTT
1 CCTT
3594762 TGTCTTTAAG
Statistics
Matches: 32, Mismatches: 10, Indels: 10
0.62 0.19 0.19
Matches are distributed among these distances:
20 4 0.12
21 14 0.44
22 10 0.31
23 4 0.12
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (21 bp):
CCTTGAATCAGCATATTGGCA
Found at i:3594757 original size:187 final size:183
Alignment explanation
Indices: 3594438--3595097 Score: 901
Period size: 187 Copynumber: 3.5 Consensus size: 183
3594428 GGCATATTCT
* *
3594438 TTTAAGCCCAATATCGCTCGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
3594503 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCT-GACTTGAATCAGCATATTG
* * *
3594568 GCAGCTTGGTTTTTAAGATTAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
130 GCACCTTCGTTTTTAAGATCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
** *
3594622 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTACCGCCTTTGTCATCTTTAAGACCAATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTG---TCTTTAAGACCAATG
* *
3594687 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTAAGCCCGATATCGCTAGACTTGAATCAGCATA
63 TCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCT-GACTTGAATCAGCATA
* * *
3594752 TTGGCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
127 TTGGCACCTTCGTTTTTAAGATCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
3594809 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
* * *
3594874 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAACATCGCTGGCTTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGAC-TTGAATCAGCATATTG
* *
3594939 GCACCTTCGTCATCTTCAAG-TCCAATGTCGCTGGCCTTGAATCAGCACATTGGAACCTTCATC
130 GCACCTTCGT--T-TTTAAGAT-CAATGTCGCTGGCCTTGAATCAGCACATTGG------CACC
* * * *
3595002 TTTAAGTTCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTCAA-ACCAAT
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-GTCTTT-AAGACCAAT
* *
3595066 GTCGCCGGCCTTGAATCAGCACATTAGCACCT
62 GTCGCTGGCCTTGAATCAGCACATTGGCACCT
3595098 GTCGTAACGT
Statistics
Matches: 425, Mismatches: 33, Indels: 24
0.88 0.07 0.05
Matches are distributed among these distances:
183 2 0.00
184 126 0.30
187 208 0.49
193 45 0.11
195 1 0.00
196 41 0.10
197 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (183 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGACTTGAATCAGCATATTGG
CACCTTCGTTTTTAAGATCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC
Found at i:3594843 original size:279 final size:280
Alignment explanation
Indices: 3594438--3595097 Score: 982
Period size: 279 Copynumber: 2.3 Consensus size: 280
3594428 GGCATATTCT
*
3594438 TTTAAGCCCAATATCGCTCGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
3594503 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
* * **
3594568 GCAGCTTGGTTTTTAAGATTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
131 GCACCTTGGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
* * * *
3594633 TATCGCTGGCCTTGAATCAGCATATTACCGCCTTTGTCATCTTTAAGACCAATGTCGCTGGCCTT
196 CATCGCTGGCCTTGAATCAGCATATTACCACCTTCGTCATCTTCAAGACCAATGTCGCTGGCCTT
*
3594698 GAATCAGCATATTGG-CACC
261 GAATCAGCACATTGGACACC
* *
3594717 TTTAAGCCCGATATCGCTAGACTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
1 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
3594782 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
66 CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
*
3594847 GCACCTTTGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
131 GCACCTTGGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
* ** *
3594912 CATCGCTGGCTTTGAATCAGCATATTGGCACCTTCGTCATCTTCAAGTCCAATGTCGCTGGCCTT
196 CATCGCTGGCCTTGAATCAGCATATTACCACCTTCGTCATCTTCAAGACCAATGTCGCTGGCCTT
*
3594977 GAATCAGCACATTGGAACCTTCATC
261 GAATCAGCACATTGG-A----CACC
** * * * *
3595002 TTTAAGTTCAATATCGCTGGCCTTGAATCAACATATTGGCGCCTTCGTCATCTTTCAA-ACCAAT
1 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTT--T-GTCTTT-AAGACCAAT
* *
3595066 GTCGCCGGCCTTGAATCAGCACATTAGCACCT
62 GTCGCTGGCCTTGAATCAGCACATTGGCACCT
3595098 GTCGTAACGT
Statistics
Matches: 342, Mismatches: 29, Indels: 11
0.90 0.08 0.03
Matches are distributed among these distances:
279 257 0.75
285 41 0.12
287 1 0.00
288 41 0.12
289 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (280 bp):
TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
CTGGCCTTGAATCAGCACATTGGCACCTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTG
GCACCTTGGTCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAA
CATCGCTGGCCTTGAATCAGCATATTACCACCTTCGTCATCTTCAAGACCAATGTCGCTGGCCTT
GAATCAGCACATTGGACACC
Found at i:3598243 original size:52 final size:52
Alignment explanation
Indices: 3598165--3598292 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
3598155 CGAAATATGA
3598165 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
3598217 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
*
3598269 AAA-TTGCCTGAATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
3598293 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
51 20 0.27
52 55 0.73
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:3598305 original size:51 final size:51
Alignment explanation
Indices: 3598165--3598312 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 51
3598155 CGAAATATGA
* *
3598165 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGAATGTATCGATACA-TAAATAATGTATCGATACATCTGGGC
* *
3598217 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGAATGTATCGATACA-TAAATAATGTATCGATACATCTGGGC
*
3598269 AAA-TTGCCTGAATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGAATGTATCGATACATAA-AT-AATGTATCGATACA
3598313 ATGTATTGAT
Statistics
Matches: 91, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
49 1 0.01
50 2 0.02
51 33 0.36
52 55 0.60
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (51 bp):
AAATTTGCCTGAATGTATCGATACATAAATAATGTATCGATACATCTGGGC
Found at i:3598403 original size:33 final size:33
Alignment explanation
Indices: 3598366--3598432 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3598356 AGTAGCTTAA
3598366 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
3598399 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
3598432 A
1 A
3598433 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:3598406 original size:13 final size:13
Alignment explanation
Indices: 3598388--3598412 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3598378 CAAAAAAATA
3598388 TGTATCGATACAT
1 TGTATCGATACAT
3598401 TGTATCGATACA
1 TGTATCGATACA
3598413 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3599761 original size:31 final size:31
Alignment explanation
Indices: 3599704--3599853 Score: 121
Period size: 31 Copynumber: 4.9 Consensus size: 31
3599694 CTTCAAATAC
* * *
3599704 CTTCTTAAAGTCCACGACTTAATGGCAATCT
1 CTTCTCAAAGTCCACGACTCAGTGGCAATCT
*
3599735 CTTCTCAAAGTCCATGACTCAGTGGC-AT-T
1 CTTCTCAAAGTCCACGACTCAGTGGCAATCT
* * *
3599764 -TTGACCCAAAGTCCACGACTCGGTGGC-ATTT
1 CTT--CTCAAAGTCCACGACTCAGTGGCAATCT
* ***
3599795 TTTCTCCAAAGTCCGTAACTCAGTGGCAATCT
1 CTTCT-CAAAGTCCACGACTCAGTGGCAATCT
*
3599827 CCTT-TCAAAGTCCACGACTCCGTGGCA
1 -CTTCTCAAAGTCCACGACTCAGTGGCA
3599854 CCCTTTTAAA
Statistics
Matches: 94, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
28 2 0.02
29 1 0.01
30 25 0.27
31 58 0.62
32 6 0.06
33 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (31 bp):
CTTCTCAAAGTCCACGACTCAGTGGCAATCT
Found at i:3599776 original size:30 final size:31
Alignment explanation
Indices: 3599740--3599822 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
3599730 AATCTCTTCT
3599740 CAAAGTCCATGACTCAGTGGCATTTTGAC-C
1 CAAAGTCCATGACTCAGTGGCATTTTGACTC
* * **
3599770 CAAAGTCCACGACTCGGTGGCATTTTTTCTC
1 CAAAGTCCATGACTCAGTGGCATTTTGACTC
* *
3599801 CAAAGTCCGTAACTCAGTGGCA
1 CAAAGTCCATGACTCAGTGGCA
3599823 ATCTCCTTTC
Statistics
Matches: 44, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 25 0.57
31 19 0.43
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (31 bp):
CAAAGTCCATGACTCAGTGGCATTTTGACTC
Found at i:3599888 original size:28 final size:28
Alignment explanation
Indices: 3599827--3599881 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
3599817 GTGGCAATCT
* * *
3599827 CCTTTCAAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAAGTCCACAACTCCATGGCAC
3599855 CCTTTTAAAGTCCACAACTCCATGGCA
1 CCTTTTAAAGTCCACAACTCCATGGCA
3599882 TCTTTTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.24
Consensus pattern (28 bp):
CCTTTTAAAGTCCACAACTCCATGGCAC
Found at i:3599920 original size:34 final size:33
Alignment explanation
Indices: 3599858--3600122 Score: 261
Period size: 34 Copynumber: 7.9 Consensus size: 33
3599848 GTGGCACCCT
*
3599858 TTTAAAGTCCACAACTCCATGGCATCTTTTTCC
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
* *
3599891 TTTAAAGCCCACAACTCCGTGGCATTCTTTTTCTT
1 TTTAAAGTCCACAACTCCGTGGCA-TCTTTTTC-C
* *
3599926 TTTAAAGTCCACAACTCTGTGGCATCTCTTTCC
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
* *
3599959 TTCAAAGTCCACAACTCAGTGGCATCCCTTTTTCC
1 TTTAAAGTCCACAACTCCGTGGCAT--CTTTTTCC
* *
3599994 TGT-AAGTCCACAACTCTGTGGCATCTTTTT--
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
* * * * *
3600024 TCT-AGGTCCACGACTCCGTGGCACCTTTTTCTT
1 TTTAAAGTCCACAACTCCGTGGCATCTTTTTC-C
* *
3600057 TTTAAAGCCCACAACACCGTGGCACTCTTTTTCCC
1 TTTAAAGTCCACAACTCCGTGGCA-TCTTTTT-CC
* *
3600092 TTTTAAA-TCCAAAACTCCGTGGCACCTTTTT
1 -TTTAAAGTCCACAACTCCGTGGCATCTTTTT
3600123 AAGTCTACAA
Statistics
Matches: 192, Mismatches: 29, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
30 25 0.13
32 6 0.03
33 47 0.24
34 57 0.30
35 50 0.26
36 7 0.04
ACGTcount: A:0.21, C:0.31, G:0.12, T:0.36
Consensus pattern (33 bp):
TTTAAAGTCCACAACTCCGTGGCATCTTTTTCC
Found at i:3599938 original size:35 final size:33
Alignment explanation
Indices: 3599856--3600154 Score: 260
Period size: 33 Copynumber: 9.2 Consensus size: 33
3599846 CCGTGGCACC
*
3599856 CTTTTAAAGTCCACAACTCCATGGCATCTTTTT
1 CTTTTAAAGTCCACAACTCCGTGGCATCTTTTT
* *
3599889 CCTTTAAAGCCCACAACTCCGTGGCATTCTTTTT
1 CTTTTAAAGTCCACAACTCCGTGGCA-TCTTTTT
* *
3599923 CTTTTTAAAGTCCACAACTCTGTGGCATCTCTTT
1 C-TTTTAAAGTCCACAACTCCGTGGCATCTTTTT
* * *
3599957 CCTTCAAAGTCCACAACTCAGTGGCATCCCTTTTT
1 CTTTTAAAGTCCACAACTCCGTGGCAT--CTTTTT
* * *
3599992 CCTGT-AAGTCCACAACTCTGTGGCATC-TTTT
1 CTTTTAAAGTCCACAACTCCGTGGCATCTTTTT
* * * *
3600023 -TTCT-AGGTCCACGACTCCGTGGCACCTTTTT
1 CTTTTAAAGTCCACAACTCCGTGGCATCTTTTT
* *
3600054 CTTTTTAAAGCCCACAACACCGTGGCACTCTTTTT
1 C-TTTTAAAGTCCACAACTCCGTGGCA-TCTTTTT
*
3600089 CCCTTTTAAA-TCCAAAACTCCGTGGCA-C-----
1 --CTTTTAAAGTCCACAACTCCGTGGCATCTTTTT
* * *
3600117 CTTTTTAAGTCTACAACTCCGTGGCATCTTTCT
1 CTTTTAAAGTCCACAACTCCGTGGCATCTTTTT
3600150 CTTTT
1 CTTTT
3600155 TCAAGAGCCT
Statistics
Matches: 216, Mismatches: 32, Indels: 36
0.76 0.11 0.13
Matches are distributed among these distances:
26 7 0.03
27 15 0.07
28 1 0.00
30 20 0.09
31 8 0.04
32 1 0.00
33 55 0.25
34 51 0.24
35 50 0.23
36 7 0.03
37 1 0.00
ACGTcount: A:0.21, C:0.30, G:0.12, T:0.36
Consensus pattern (33 bp):
CTTTTAAAGTCCACAACTCCGTGGCATCTTTTT
Found at i:3600124 original size:27 final size:27
Alignment explanation
Indices: 3600092--3600147 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
3600082 TCTTTTTCCC
3600092 TTTTAAATCCAAAACTCCGTGGCACCT
1 TTTTAAATCCAAAACTCCGTGGCACCT
* * * *
3600119 TTTTAAGTCTACAACTCCGTGGCATCT
1 TTTTAAATCCAAAACTCCGTGGCACCT
3600146 TT
1 TT
3600148 CTCTTTTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (27 bp):
TTTTAAATCCAAAACTCCGTGGCACCT
Found at i:3600281 original size:49 final size:49
Alignment explanation
Indices: 3600215--3600735 Score: 551
Period size: 49 Copynumber: 10.9 Consensus size: 49
3600205 GGCATCTTCT
* *
3600215 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* * *
3600264 TTTAAGACCATTGTCGCTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
*
3600307 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* * * *
3600356 TTTAAGACAAATGTCGCTGGCCTTGAATCAGCACATTGGCA------AC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
3600399 TTTAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* * *
3600448 TTTAAGACCAATGTCACTGGCCTTGAATCAGCACATTGGCA-C-----C
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
*
3600491 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* * * **
3600540 TTTAAGACCAATGTCTCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* ** *
3600589 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTCGTCATC
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-GTC
* ** * **
3600641 TTTCAA-ACCAATGTCGCCAGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTT-AAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
* * * * *
3600690 CTTAAGTCCAATATCGTTGGCCTTGAATCAGCGTATTGGCATCTTT
1 TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT
3600736 AATATTCCTA
Statistics
Matches: 391, Mismatches: 56, Indels: 50
0.79 0.11 0.10
Matches are distributed among these distances:
42 1 0.00
43 113 0.29
44 2 0.01
48 4 0.01
49 229 0.59
50 2 0.01
52 38 0.10
53 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTC
Found at i:3600372 original size:92 final size:92
Alignment explanation
Indices: 3600215--3600779 Score: 754
Period size: 92 Copynumber: 5.9 Consensus size: 92
3600205 GGCATCTTCT
* *
3600215 TTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCATTGTCG
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
3600280 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
3600307 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACAAATGTCG
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
*
3600372 CTGGCCTTGAATCAGCACATTGGCAAC
66 CTGGCCTTGAATCAGCACATTGGCACC
* *
3600399 TTTAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCA
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
3600464 CTGGCCTTGAATCAGCACATTGGCACC
66 CTGGCCTTGAATCAGCACATTGGCACC
*
3600491 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCT
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
3600556 CTGGCCTTGAATCAGCACATTGGCACCTTCATC
66 CTGGCCTTGAATCAGCACATTGGCA----C--C
* ** *
3600589 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTCGTCATCTTTCAA-ACCAAT
1 TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-GTCTTT-AAGACCAAT
**
3600653 GTCGCCAGCCTTGAATCAGCACATTGGCACCTTC
62 GTCGCTGGCCTTGAATCAGCACATTGGCA-C--C
* * * * * * *
3600687 ATCCTTAAGTCCAATATCGTTGGCCTTGAATCAGCGTATTGGCATCTTTAATATTCCTAAGCCCA
1 -T--TTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-GTCTT--TAAGACCA
**
3600752 ATGTCGCTGGCCTTGCCTCAGCACATTG
60 ATGTCGCTGGCCTTGAATCAGCACATTG
3600780 TCATTTTTTT
Statistics
Matches: 426, Mismatches: 31, Indels: 23
0.89 0.06 0.05
Matches are distributed among these distances:
92 264 0.62
96 1 0.00
98 46 0.11
99 6 0.01
100 3 0.01
101 104 0.24
102 2 0.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (92 bp):
TTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCTTTAAGACCAATGTCG
CTGGCCTTGAATCAGCACATTGGCACC
Found at i:3600664 original size:52 final size:50
Alignment explanation
Indices: 3600490--3600779 Score: 291
Period size: 49 Copynumber: 5.8 Consensus size: 50
3600480 ACATTGGCAC
* * * *
3600490 CTTTAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTT-GT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTCAT
*
3600539 CTTTAAGACCAATGTCTCTGGCCTTGAATCAGCACATTGGCACC-TTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTCAT
* * * **
3600588 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGTGCCTTCGTCAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT--TCAT
**
3600640 CTTTCAA-ACCAATGTCGCCAGCCTTGAATCAGCACATTGGCACC-TTCAT
1 CTTT-AAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTCAT
* * * * ** * *
3600689 CCTTAAGTCCAATATCGTTGGCCTTGAATCAGCGTATTGGCATCTTTAAT
1 CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTCAT
* * **
3600739 ATTCCTAAGCCCAATGTCGCTGGCCTTGCCTCAGCACATTG
1 CTT--TAAGACCAATGTCGCTGGCCTTGAATCAGCACATTG
3600780 TCATTTTTTT
Statistics
Matches: 195, Mismatches: 37, Indels: 15
0.79 0.15 0.06
Matches are distributed among these distances:
48 4 0.02
49 115 0.59
50 6 0.03
51 1 0.01
52 67 0.34
53 2 0.01
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.31
Consensus pattern (50 bp):
CTTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTTCAT
Found at i:3601634 original size:19 final size:19
Alignment explanation
Indices: 3601610--3601659 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
3601600 ATCGATACAA
3601610 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
*
3601629 TGTATCGATACATAAGTTT
1 TGTATCGATACATAAGTGT
3601648 TGTATCGATACA
1 TGTATCGATACA
3601660 ATGTATCTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:3606815 original size:26 final size:22
Alignment explanation
Indices: 3606771--3606825 Score: 78
Period size: 20 Copynumber: 2.6 Consensus size: 22
3606761 CATAAGTAAA
3606771 TGTATCGATACATACTTATAAT
1 TGTATCGATACATACTTATAAT
*
3606793 TGTATCGATACAT--TTATCAT
1 TGTATCGATACATACTTATAAT
*
3606813 TATATCGATACAT
1 TGTATCGATACAT
3606826 TCTAGGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 18 0.58
22 13 0.42
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.42
Consensus pattern (22 bp):
TGTATCGATACATACTTATAAT
Found at i:3606853 original size:51 final size:51
Alignment explanation
Indices: 3606793--3606924 Score: 210
Period size: 51 Copynumber: 2.6 Consensus size: 51
3606783 TACTTATAAT
* *
3606793 TGTATCGATACATTTATCATTATATCGATACATTCTAGGTTTTAACCCAAA
1 TGTATCGATACATTTATCATTGTATCGATAAATTCTAGGTTTTAACCCAAA
*
3606844 TGTATCGATACATTTATCATTGTATCGATAAATTCTGGGTTTTAACCCAAA
1 TGTATCGATACATTTATCATTGTATCGATAAATTCTAGGTTTTAACCCAAA
* * *
3606895 TGTATCGATAAATTTTTCAATGTATCGATA
1 TGTATCGATACATTTATCATTGTATCGATA
3606925 TATGCAGGCA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 75 1.00
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (51 bp):
TGTATCGATACATTTATCATTGTATCGATAAATTCTAGGTTTTAACCCAAA
Found at i:3609415 original size:79 final size:79
Alignment explanation
Indices: 3609279--3609641 Score: 374
Period size: 79 Copynumber: 4.6 Consensus size: 79
3609269 TTCATTGATG
* * *
3609279 TTTTAATTTCTAAAATATCGATTTTCCACCATCGAGGATACTCCAACCTAGTTATTTCCAAGGGG
1 TTTT-ATTTCTAAAACATCAATTTTCCACCATCGGGGATACTCCAACCTAGTTATTTCCAAGGGG
3609344 ATACTCCAACCCCGGA
65 ATACTCCAACCCC-GA
* * * * *
3609360 -TTTATTTCTAAAATA-CTAATTTTTCACCATTGGGGATACTCCAACCTTGTTATTTCTAAGGGG
1 TTTTATTTCTAAAACATC-AATTTTCCACCATCGGGGATACTCCAACCTAGTTATTTCCAAGGGG
3609423 ATACTCCAACCCCGA
65 ATACTCCAACCCCGA
* * * * * * *
3609438 TTTTATTTTTAAAACATCGATTTTTCACTATCGGGGATACTCCAACCCCA-TTATTTTCGAGGGG
1 TTTTATTTCTAAAACATCAATTTTCCACCATCGGGGATACTCCAA-CCTAGTTATTTCCAAGGGG
* *
3609502 ATATTCGAACCCC-A
65 ATACTCCAACCCCGA
* * * ** *
3609516 TTTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTTCAACCTAGTTATTTTTAAGGGAA
1 TTTTATTTCTAAAACATCAATTTTCCACCATCGGGGATACTCCAACCTAGTTATTTCCAAGGGGA
* **
3609581 TATTCCAACCTTGA
66 TACTCCAACCCCGA
* * * * **
3609595 CTTTACTTGTAAAACATCGATTTTTTACCATCGGGGATACTCCAACC
1 TTTTATTTCTAAAACATCAATTTTCCACCATCGGGGATACTCCAACC
3609642 CTGATTTTAT
Statistics
Matches: 235, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
77 3 0.01
78 63 0.27
79 163 0.69
80 6 0.03
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (79 bp):
TTTTATTTCTAAAACATCAATTTTCCACCATCGGGGATACTCCAACCTAGTTATTTCCAAGGGGA
TACTCCAACCCCGA
Found at i:3609577 original size:157 final size:158
Alignment explanation
Indices: 3609279--3609642 Score: 446
Period size: 157 Copynumber: 2.3 Consensus size: 158
3609269 TTCATTGATG
* * * *
3609279 TTTTAATTTCTAAAATATCGATTTTCCACCATCGAGGATACTCCAA-CCTAGTTATTTCCAAGGG
1 TTTT-ATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCAGTTATTTCCAAGGG
* * * ** *
3609343 GATACTCCAACCCCGGATTTATTTCTAAAATACTAATTTTTCACCATTGGGGATACTCCAACCTT
65 GATACTCCAACCCC-GATTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTCCAACCTA
*
3609408 GTTATTTCTAAGGGGATACTCCAACCCCGA
129 GTTATTTCTAAGGGAATACTCCAACCCCGA
* * * *
3609438 TTTTATTTTTAAAACATCGATTTTTCACTATCGGGGATACTCCAACCCCA-TTATTTTCGAGGGG
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCAGTTATTTCCAAGGGG
* * *
3609502 ATATTCGAACCCC-ATTTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTTCAACCTAG
66 ATACTCCAACCCCGA-TTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTCCAACCTAG
* * **
3609566 TTATTTTTAAGGGAATATTCCAACCTTGA
130 TTATTTCTAAGGGAATACTCCAACCCCGA
* * * *
3609595 CTTTACTTGTAAAACATCGATTTTTTACCATCGGGGATACTCCAACCC
1 TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCC
3609643 TGATTTTATT
Statistics
Matches: 176, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
156 1 0.01
157 109 0.62
158 59 0.34
159 7 0.04
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.35
Consensus pattern (158 bp):
TTTTATTTCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCCAGTTATTTCCAAGGGG
ATACTCCAACCCCGATTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTCCAACCTAGT
TATTTCTAAGGGAATACTCCAACCCCGA
Found at i:3609640 original size:51 final size:51
Alignment explanation
Indices: 3609576--3609693 Score: 139
Period size: 51 Copynumber: 2.3 Consensus size: 51
3609566 TTATTTTTAA
* * * **
3609576 GGGAATATTCCAACCTTGACTTTACTTGTAAAACA-TCGATTTTTTACCATC
1 GGGAATACTCCAACCCTGACTTTACTTCTAAAACACT-GATTTTCCACCATC
* * * *
3609627 GGGGATACTCCAACCCTGATTTTATTTCTAAAACACTGATTTTCCACTATC
1 GGGAATACTCCAACCCTGACTTTACTTCTAAAACACTGATTTTCCACCATC
3609678 GGGAATACTCCAACCC
1 GGGAATACTCCAACCC
3609694 CATTATTTTC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 55 0.98
52 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (51 bp):
GGGAATACTCCAACCCTGACTTTACTTCTAAAACACTGATTTTCCACCATC
Found at i:3609710 original size:79 final size:79
Alignment explanation
Indices: 3609627--3609850 Score: 310
Period size: 79 Copynumber: 2.8 Consensus size: 79
3609617 TTTTACCATC
* * *
3609627 GGGGATACTCCAACCCTGATTTTATTTCTAAAACACTGATTTTCCACTATCGGGAATACTCCAAC
1 GGGGATACTCAAACCCTGATTTTATTTCTAAAACACTGATTTTTCACCATCGGGAATACTCCAAC
*
3609692 CCCATTATTTTCGA
66 CCCATTATTTTCAA
* * *
3609706 GGGGATACTCAAACCCTGGTTTTATTCCTAAAACACTGATTTTTCACCATCAGGG-ATACTCTAA
1 GGGGATACTCAAACCCTGATTTTATTTCTAAAACACTGATTTTTCACCATC-GGGAATACTCCAA
*
3609770 TCCCATTATTTTCAA
65 CCCCATTATTTTCAA
* *
3609785 GGGGATACTCTAA-CCTCGATTTTATTTCTAAAACACTAATTTTTCACCATC-GGAGATACTCCA
1 GGGGATACTCAAACCCT-GATTTTATTTCTAAAACACTGATTTTTCACCATCGGGA-ATACTCCA
3609848 ACC
64 ACC
3609851 TCGATTTTAT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
77 2 0.02
78 3 0.02
79 119 0.94
80 3 0.02
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.33
Consensus pattern (79 bp):
GGGGATACTCAAACCCTGATTTTATTTCTAAAACACTGATTTTTCACCATCGGGAATACTCCAAC
CCCATTATTTTCAA
Found at i:3609748 original size:130 final size:129
Alignment explanation
Indices: 3609498--3609776 Score: 296
Period size: 130 Copynumber: 2.2 Consensus size: 129
3609488 TTATTTTCGA
* * *
3609498 GGGGATATTCGAACCCCATTTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTTCAACC
1 GGGGATACTCCAACCCCATTTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTCCAACC
* * * * * * *
3609563 TAGTTATTTTTAAGGGAATATTCCAACCTTGACTTTACTTGTAAAACATCGATTTTTTACCATC
66 CAGTTATTTTCAAGGGAATACTCAAACCCTGACTTTACTTCTAAAACATCGATTTTTCACCATC
* ** *
3609627 GGGGATACTCCAACCCTGATTTTATTTCTAAAACACTGATTTTCCACTATC-GGGAATACTCCAA
1 GGGGATACTCCAACCC-CATTTTATTTCTAAAACACCAATTTTCCACCATCAGGG-ATACTCCAA
* * **
3609691 CCCCA-TTATTTTCGAGGGGATACTCAAACCCTGGTTTTA-TTCCTAAAACA-CTGATTTTTCAC
64 -CCCAGTTATTTTCAAGGGAATACTCAAACCCTGACTTTACTT-CTAAAACATC-GATTTTTCAC
3609753 CATC
126 CATC
* * *
3609757 AGGGATACTCTAATCCCATT
1 GGGGATACTCCAACCCCATT
3609777 ATTTTCAAGG
Statistics
Matches: 123, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
129 23 0.19
130 97 0.79
131 3 0.02
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (129 bp):
GGGGATACTCCAACCCCATTTTATTTCTAAAACACCAATTTTCCACCATCAGGGATACTCCAACC
CAGTTATTTTCAAGGGAATACTCAAACCCTGACTTTACTTCTAAAACATCGATTTTTCACCATC
Found at i:3609850 original size:209 final size:208
Alignment explanation
Indices: 3609422--3609906 Score: 588
Period size: 209 Copynumber: 2.3 Consensus size: 208
3609412 TTTCTAAGGG
* * * *
3609422 GATACTCCAACCCCGATTTTATTTTTAAAACATCGATTTTTCACTATCGGGGATACTCCAACCCC
1 GATACTCCAACCCTGATTTTATTTCTAAAACATCGATTTTCCACTATCGGGAATACTCCAACCCC
* * *
3609487 ATTATTTTCGAGGGGATATTCGAACCCCATTTTATTTCTAAAACACCAATTTTCCACCATCAGGG
66 ATTATTTTCGAGGGGATACTCAAACCCCATTTTATTCCTAAAACACCAATTTTCCACCATCAGGG
* * * * * *
3609552 ATACTTCAACCTAGTTATTTTTAAGGGAATATTCCAACCTTGACTTTACTTGTAAAACATCGATT
131 ATACTTCAACCCAGTTATTTTCAAGGGAATACTCCAACCTCGACTTTACTTCTAAAACATCAATT
* *
3609617 TTTTACCATCGGG
196 TTTCACCATCGGA
3609630 GATACTCCAACCCTGATTTTATTTCTAAAACA-CTGATTTTCCACTATCGGGAATACTCCAACCC
1 GATACTCCAACCCTGATTTTATTTCTAAAACATC-GATTTTCCACTATCGGGAATACTCCAACCC
** ** *
3609694 CATTATTTTCGAGGGGATACTCAAACCCTGGTTTTATTCCTAAAACACTGATTTTTCACCATCAG
65 CATTATTTTCGAGGGGATACTCAAACCC-CATTTTATTCCTAAAACACCAATTTTCCACCATCAG
* * * *
3609759 GGATAC-TCTAATCCCA-TTATTTTCAAGGGGATACTCTAACCTCGATTTTATTTCTAAAACA-C
129 GGATACTTC-AA-CCCAGTTATTTTCAAGGGAATACTCCAACCTCGACTTTACTTCTAAAACATC
3609821 TAATTTTTCACCATCGGA
192 -AATTTTTCACCATCGGA
* * * * *
3609839 GATACTCCAA-CCTCGATTTTATTACAAAAATATCGATTTTTCAAC-ATCGAGG-ATACTCTAAC
1 GATACTCCAACCCT-GATTTTATTTCTAAAACATCGA-TTTTCCACTATCG-GGAATACTCCAAC
3609901 CCCATT
63 CCCATT
3609907 TTTATTTCCA
Statistics
Matches: 239, Mismatches: 29, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
207 1 0.00
208 90 0.38
209 135 0.56
210 13 0.05
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (208 bp):
GATACTCCAACCCTGATTTTATTTCTAAAACATCGATTTTCCACTATCGGGAATACTCCAACCCC
ATTATTTTCGAGGGGATACTCAAACCCCATTTTATTCCTAAAACACCAATTTTCCACCATCAGGG
ATACTTCAACCCAGTTATTTTCAAGGGAATACTCCAACCTCGACTTTACTTCTAAAACATCAATT
TTTCACCATCGGA
Found at i:3609878 original size:51 final size:51
Alignment explanation
Indices: 3609787--3609952 Score: 176
Period size: 51 Copynumber: 3.3 Consensus size: 51
3609777 ATTTTCAAGG
* * *
3609787 GGATACTCTAACCTCGATTTTATTTCTAAAACA-CTAATTTTTCACCATCG-
1 GGATACTCCAACCTCGATTTTATTTCAAAAATATC-AATTTTTCACCATCGA
* * *
3609837 GAGATACTCCAACCTCGATTTTATTACAAAAATATCGATTTTTCAACATCGA
1 G-GATACTCCAACCTCGATTTTATTTCAAAAATATCAATTTTTCACCATCGA
* * * * * *
3609889 GGATACTCTAACC-CCATTTTTATTTCCAAAATATCAATTTCTCACCTTCAA
1 GGATACTCCAACCTCGA-TTTTATTTCAAAAATATCAATTTTTCACCATCGA
3609940 GGATACTCCAACC
1 GGATACTCCAACC
3609953 CCCTTGTTTT
Statistics
Matches: 96, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
50 3 0.03
51 91 0.95
52 2 0.02
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.34
Consensus pattern (51 bp):
GGATACTCCAACCTCGATTTTATTTCAAAAATATCAATTTTTCACCATCGA
Found at i:3610820 original size:30 final size:30
Alignment explanation
Indices: 3610779--3610870 Score: 78
Period size: 30 Copynumber: 3.4 Consensus size: 30
3610769 TTGTTCATTA
*
3610779 TATCAATACATTCTGGGTTTTACCCAGATG
1 TATCGATACATTCTGGGTTTTACCCAGATG
* *
3610809 TATCGATACA-T-T--G--TT---CA-TTA
1 TATCGATACATTCTGGGTTTTACCCAGATG
*
3610829 TATCGATACATTCTGGGTTGTACCCAGATG
1 TATCGATACATTCTGGGTTTTACCCAGATG
3610859 TATCGATACATT
1 TATCGATACATT
3610871 ATTCATTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 20
0.64 0.08 0.28
Matches are distributed among these distances:
20 11 0.24
21 3 0.07
22 1 0.02
24 3 0.07
26 2 0.04
28 1 0.02
29 3 0.07
30 22 0.48
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (30 bp):
TATCGATACATTCTGGGTTTTACCCAGATG
Found at i:3610887 original size:20 final size:20
Alignment explanation
Indices: 3610859--3610910 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
3610849 TACCCAGATG
3610859 TATCGATACATTATTCATTA
1 TATCGATACATTATTCATTA
* * * *
3610879 TATCAATACGTTGTTCATTG
1 TATCGATACATTATTCATTA
3610899 TATCGATACATT
1 TATCGATACATT
3610911 CTAGGTTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.44
Consensus pattern (20 bp):
TATCGATACATTATTCATTA
Found at i:3610900 original size:50 final size:50
Alignment explanation
Indices: 3610757--3610887 Score: 235
Period size: 50 Copynumber: 2.6 Consensus size: 50
3610747 TTTCACAATT
*
3610757 TGTATCGATACATTGTTCATTATATCAATACATTCTGGGTTTTACCCAGA
1 TGTATCGATACATTGTTCATTATATCAATACATTCTGGGTTGTACCCAGA
*
3610807 TGTATCGATACATTGTTCATTATATCGATACATTCTGGGTTGTACCCAGA
1 TGTATCGATACATTGTTCATTATATCAATACATTCTGGGTTGTACCCAGA
*
3610857 TGTATCGATACATTATTCATTATATCAATAC
1 TGTATCGATACATTGTTCATTATATCAATAC
3610888 GTTGTTCATT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.40
Consensus pattern (50 bp):
TGTATCGATACATTGTTCATTATATCAATACATTCTGGGTTGTACCCAGA
Found at i:3610903 original size:70 final size:70
Alignment explanation
Indices: 3610809--3610960 Score: 232
Period size: 70 Copynumber: 2.2 Consensus size: 70
3610799 TACCCAGATG
*
3610809 TATCGATACATTGTTCATTATATCGATACATTCTGGGTTGTACCCAGATGTATCGATACATTATT
1 TATCGATACATTGTTCATTATATCGATACATTCTAGGTTGTACCCAGATGTATCGATACATTATT
*
3610874 CATTA
66 CAATA
* * * * * *
3610879 TATCAATACGTTGTTCATTGTATCGATACATTCTAGGTTTTACTCAGATGTATCGATACATTTTT
1 TATCGATACATTGTTCATTATATCGATACATTCTAGGTTGTACCCAGATGTATCGATACATTATT
3610944 CAATA
66 CAATA
3610949 TATCGATACATT
1 TATCGATACATT
3610961 CAGGTATTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 72 1.00
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.41
Consensus pattern (70 bp):
TATCGATACATTGTTCATTATATCGATACATTCTAGGTTGTACCCAGATGTATCGATACATTATT
CAATA
Found at i:3613611 original size:79 final size:79
Alignment explanation
Indices: 3613288--3613620 Score: 405
Period size: 79 Copynumber: 4.2 Consensus size: 79
3613278 ATTAGTGTTT
* * * * * * *
3613288 TTATTTCCGAGGGGATACTCTAACCTCGGTTTTATTCCCAAAACACTAATTTTTCACAATCGGGG
1 TTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
3613353 ATACTCCAACCCCG
66 ATACTCCAACCCCG
* * * * *
3613367 TTATTTCCAAGGGGATACTCCAACCTCGATTTTATTTCCAAAATATCAATTTTTCACAATCGGAG
1 TTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
*
3613432 ATACTCCAACCCTG
66 ATACTCCAACCCCG
** * * * *
3613446 TTATTTTTTAGGAGATACTCCAACCCCGATTTTATTTCCAAAATACCAAATTTTCACAATCGAGG
1 TTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
3613511 ATACTCCAACCCCG
66 ATACTCCAACCCCG
* * * * * * *
3613525 TTGTTTTCAAGGGGATACACCAACCCCGGTTTTATTTCTAAAACACCGATTTTTCATAATTGGGG
1 TTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
*
3613590 ATACTCCAACCCTG
66 ATACTCCAACCCCG
* *
3613604 TTATTTTCGAGAGGATA
1 TTATTTTCAAGGGGATA
3613621 TTGCAATCCT
Statistics
Matches: 218, Mismatches: 36, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
79 218 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (79 bp):
TTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGG
ATACTCCAACCCCG
Found at i:3617764 original size:20 final size:21
Alignment explanation
Indices: 3617738--3617791 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
3617728 CATTTCAGAC
3617738 ATGTATCGATACA-TGCACTT
1 ATGTATCGATACATTGCACTT
* *
3617758 CTGTATCGATACATTGCCCTT
1 ATGTATCGATACATTGCACTT
3617779 ATGTATCGATACA
1 ATGTATCGATACA
3617792 ATTTGTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 12 0.40
21 18 0.60
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (21 bp):
ATGTATCGATACATTGCACTT
Found at i:3624551 original size:51 final size:50
Alignment explanation
Indices: 3624458--3624586 Score: 149
Period size: 51 Copynumber: 2.6 Consensus size: 50
3624448 GTATCCCCTC
*
3624458 AAAA-AAAAT-AGGGTTGGAGTATCCCTGATTATAGAAAATTGGTGTTTT
1 AAAATAAAATCAGGGTTGGAGTATCCCTGATTATAGAAAATTGGTATTTT
* *
3624506 GAAAATAAAATCAGAGTTGGAGTAT-CCTCGATTGT-GAAAATTTGGTATTTT
1 -AAAATAAAATCAGGGTTGGAGTATCCCT-GATTATAGAAAA-TTGGTATTTT
*
3624557 AGAAATAAAATCGGGGTTGGAGTATACCCT
1 A-AAATAAAATCAGGGTTGGAGTAT-CCCT
3624587 CGAAAATAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
49 4 0.06
50 14 0.21
51 47 0.69
53 3 0.04
ACGTcount: A:0.36, C:0.09, G:0.23, T:0.32
Consensus pattern (50 bp):
AAAATAAAATCAGGGTTGGAGTATCCCTGATTATAGAAAATTGGTATTTT
Found at i:3624688 original size:79 final size:79
Alignment explanation
Indices: 3624599--3624774 Score: 194
Period size: 79 Copynumber: 2.2 Consensus size: 79
3624589 AAAATAACAA
* * *
3624599 GGTTGGAGTATCCCCGATGACATAACTGGGTTAGAGTA-CCCCAGATTATGAAAAATCAATATTT
1 GGTTGGAGTATCCCCGATAAAATAACGGGGTTAGAGTATCCCCA-ATTATGAAAAATCAATATTT
*
3624663 TAGATATAAAACCGG
65 TAGAAATAAAACCGG
* * * ** *
3624678 GGTTGGAGTATCCCCTCA-AAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTT
1 GGTTGGAGTATCCCC-GATAAAATAACGGGGTTAGAGTATCCCCAATTATGAAAAATCAATATTT
* *
3624742 TGGAAATAAAATCGG
65 TAGAAATAAAACCGG
* *
3624757 AGTTAGAGTATCCCCGAT
1 GGTTGGAGTATCCCCGAT
3624775 TAAGAAAAAT
Statistics
Matches: 79, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
78 1 0.01
79 72 0.91
80 6 0.08
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (79 bp):
GGTTGGAGTATCCCCGATAAAATAACGGGGTTAGAGTATCCCCAATTATGAAAAATCAATATTTT
AGAAATAAAACCGG
Found at i:3624823 original size:51 final size:51
Alignment explanation
Indices: 3624711--3624824 Score: 158
Period size: 51 Copynumber: 2.2 Consensus size: 51
3624701 AACGGGGTTG
* ** *
3624711 GAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCGGAGTTA
* *
3624762 GAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAGACCGG-GATTA
1 GAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCGGAG-TTA
3624813 GAGTATCCCCGA
1 GAGTATCCCCGA
3624825 GATGAAAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 1 0.02
51 55 0.98
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (51 bp):
GAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATAAAACCGGAGTTA
Found at i:3632509 original size:79 final size:78
Alignment explanation
Indices: 3632296--3632512 Score: 249
Period size: 79 Copynumber: 2.7 Consensus size: 78
3632286 AACGGGGCTA
* * *
3632296 GAGTATCCCCGATTATGGAAAATCGGTGTTCT-AGAAATAAAAATCGGGGTTGGAGTAT-CCCTA
1 GAGTATCCCTGATTATAGAAAATCGGTGTTTTGA-AAAT-AAAATC-GGGTTGGAGTATCCCCTA
3632359 AAAAATAACAGGGTTG
63 AAAAATAACAGGGTTG
* * * * * * ***
3632375 AAGTATCCCTGATTATAGAAAATCGATATTTTGAAACTAAAATTAGGGTTAGAGTATCCCCTCGG
1 GAGTATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAA-TCGGGTTGGAGTATCCCCTAAA
*
3632440 AAATAGCAGGGTTG
65 AAATAACAGGGTTG
*
3632454 GAGTATCCCTGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGAGTTGGAGTATCC
1 GAGTATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCGG-GTTGGAGTATCC
3632513 TCGATTGTGA
Statistics
Matches: 114, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
78 18 0.16
79 95 0.83
80 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.29
Consensus pattern (78 bp):
GAGTATCCCTGATTATAGAAAATCGGTGTTTTGAAAATAAAATCGGGTTGGAGTATCCCCTAAAA
AATAACAGGGTTG
Found at i:3632543 original size:51 final size:51
Alignment explanation
Indices: 3632450--3632565 Score: 148
Period size: 51 Copynumber: 2.3 Consensus size: 51
3632440 AAATAGCAGG
*
3632450 GTTGGAGTATCCCTGATTATAGAAAATTGGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCTGATTATAGAAAATTGGTATTTTGAAAATAAAATCGGA
* * *
3632501 GTTGGAGTAT-CCTCGATTGT-GAAAATTTTGTATTTT-AGAAATAAAATCGGG
1 GTTGGAGTATCCCT-GATTATAGAAAA-TTGGTATTTTGA-AAATAAAATCGGA
3632552 GTTGGAGTATCCCT
1 GTTGGAGTATCCCT
3632566 TCGAAAATAA
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
50 9 0.16
51 45 0.79
52 3 0.05
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.35
Consensus pattern (51 bp):
GTTGGAGTATCCCTGATTATAGAAAATTGGTATTTTGAAAATAAAATCGGA
Found at i:3632631 original size:107 final size:107
Alignment explanation
Indices: 3632501--3632697 Score: 288
Period size: 107 Copynumber: 1.8 Consensus size: 107
3632491 TAAAATCGGA
* * *** *
3632501 GTTGGAGTATCCTCGATTGTGAAAATTTTGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCT
1 GTTGGAGTATCCTCGATTATGAAAAATCAATATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
3632566 TCGAAAATAACAGGGTTAGAGTATCCCCGATGACATAACTGG
66 TCGAAAATAACAGGGTTAGAGTATCCCCGATGACATAACTGG
*
3632608 GTTGGAGTA-CTCTCGATTATGAAAAATCAATATTTTAGATATAAAATCGGGGTTGGAGTATCCC
1 GTTGGAGTATC-CTCGATTATGAAAAATCAATATTTTAGAAATAAAATCGGGGTTGGAGTATCCC
* * *
3632672 CTCGGAAATAACGGGGTTGGAGTATC
65 CTCGAAAATAACAGGGTTAGAGTATC
3632698 ACCAATTGTG
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
106 1 0.01
107 78 0.99
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (107 bp):
GTTGGAGTATCCTCGATTATGAAAAATCAATATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
TCGAAAATAACAGGGTTAGAGTATCCCCGATGACATAACTGG
Found at i:3632797 original size:51 final size:51
Alignment explanation
Indices: 3632707--3632804 Score: 117
Period size: 51 Copynumber: 1.9 Consensus size: 51
3632697 CACCAATTGT
* * *
3632707 GAAAAATTGGTGTTTTGGAAATAAAATCTGAGTTTGAGTAACCCCGATTAA
1 GAAAAATTGATGTTTTGGAAATAAAATCCGAGTTGGAGTAACCCCGATTAA
* ** *
3632758 GAAAATTTGATGTTTTGGAAATAGGA-CCGAGATTGGAGTATCCCCGA
1 GAAAAATTGATGTTTTGGAAATAAAATCCGAG-TTGGAGTAACCCCGA
3632805 GATGAAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
50 4 0.10
51 35 0.90
ACGTcount: A:0.35, C:0.11, G:0.24, T:0.30
Consensus pattern (51 bp):
GAAAAATTGATGTTTTGGAAATAAAATCCGAGTTGGAGTAACCCCGATTAA
Found at i:3634036 original size:20 final size:20
Alignment explanation
Indices: 3634011--3634064 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
3634001 AAAATGCCTG
3634011 AATGTATCGATACATTATAA
1 AATGTATCGATACATTATAA
*
3634031 AATGTATCGATACATTATAT
1 AATGTATCGATACATTATAA
3634051 AATGTATCGATACA
1 AATGTATCGATACA
3634065 ATGTATCGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTATAA
Found at i:3634069 original size:13 final size:13
Alignment explanation
Indices: 3634051--3634079 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
3634041 TACATTATAT
3634051 AATGTATCGATAC
1 AATGTATCGATAC
3634064 AATGTATCGATAC
1 AATGTATCGATAC
3634077 AAT
1 AAT
3634080 AAGCAATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:3634073 original size:33 final size:33
Alignment explanation
Indices: 3634031--3634100 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
3634021 TACATTATAA
* *
3634031 AATGTATCGATACATTATA-TAATGTATCGATAC
1 AATGTATCGATACAATA-AGCAATGTATCGATAC
3634064 AATGTATCGATACAATAAGCAATGTATCGATAC
1 AATGTATCGATACAATAAGCAATGTATCGATAC
3634097 AATG
1 AATG
3634101 CAAAATGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 1 0.03
33 33 0.97
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.31
Consensus pattern (33 bp):
AATGTATCGATACAATAAGCAATGTATCGATAC
Found at i:3634088 original size:20 final size:18
Alignment explanation
Indices: 3634063--3634117 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 18
3634053 TGTATCGATA
3634063 CAATGTATCGATACAATAAG
1 CAATGTATCGATACAAT--G
3634083 CAATGTATCGATACAATG
1 CAATGTATCGATACAATG
3634101 CAAAATGTATCGATACA
1 C--AATGTATCGATACA
3634118 TCTAGGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.06
20 31 0.94
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (18 bp):
CAATGTATCGATACAATG
Found at i:3634091 original size:53 final size:52
Alignment explanation
Indices: 3634011--3634117 Score: 144
Period size: 53 Copynumber: 2.0 Consensus size: 52
3634001 AAAATGCCTG
* * *
3634011 AATGTATCGATACATTATAAAATGTATCGATACATTATATAATGTATCGATAC
1 AATGTATCGATACA-TATAAAATGTATCGATACAATACAAAATGTATCGATAC
*
3634064 AATGTATCGATACA-ATAAGCAATGTATCGATACAATGCAAAATGTATCGATAC
1 AATGTATCGATACATATAA--AATGTATCGATACAATACAAAATGTATCGATAC
3634117 A
1 A
3634118 TCTAGGTAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
51 4 0.08
53 44 0.92
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (52 bp):
AATGTATCGATACATATAAAATGTATCGATACAATACAAAATGTATCGATAC
Found at i:3634174 original size:13 final size:13
Alignment explanation
Indices: 3634156--3634181 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3634146 ACAAAGATCG
3634156 ATGTATCGATATA
1 ATGTATCGATATA
3634169 ATGTATCGATATA
1 ATGTATCGATATA
3634182 TTGAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ATGTATCGATATA
Found at i:3634191 original size:20 final size:21
Alignment explanation
Indices: 3634152--3634199 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
3634142 CGCTACAAAG
*
3634152 ATCGATGTATCGATATAATGT
1 ATCGATATATCGATATAATGT
*
3634173 ATCGATATATTGA-ATAATGT
1 ATCGATATATCGATATAATGT
3634193 ATCGATA
1 ATCGATA
3634200 CATTTCCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.56
21 11 0.44
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.38
Consensus pattern (21 bp):
ATCGATATATCGATATAATGT
Found at i:3636412 original size:25 final size:25
Alignment explanation
Indices: 3636383--3636484 Score: 80
Period size: 25 Copynumber: 4.4 Consensus size: 25
3636373 ATGTTAGGTG
3636383 TGTTAGGTGATGTATTTGGTGAGAA
1 TGTTAGGTGATGTATTTGGTGAGAA
* *
3636408 TGTTAGGTG-TG--TTAGGTGATGTA
1 TGTTAGGTGATGTATTTGGTGA-GAA
*
3636431 T-TT-GGTGA-GAATGTTAGGT--G--
1 TGTTAGGTGATGTAT-TT-GGTGAGAA
3636451 TGTTAGGTGATGTATTTGGTGAGAA
1 TGTTAGGTGATGTATTTGGTGAGAA
3636476 TGTTAGGTG
1 TGTTAGGTG
3636485 TGTTAGGTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 26
0.67 0.04 0.29
Matches are distributed among these distances:
20 1 0.02
21 10 0.17
22 17 0.28
23 8 0.13
24 3 0.05
25 21 0.35
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (25 bp):
TGTTAGGTGATGTATTTGGTGAGAA
Found at i:3636506 original size:68 final size:68
Alignment explanation
Indices: 3636361--3636507 Score: 249
Period size: 68 Copynumber: 2.2 Consensus size: 68
3636351 GAGAATGATG
* *
3636361 TATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTG
1 TATTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTA
*
3636426 ATG
66 ATA
*
3636429 TATTTGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTA
1 TATTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTA
3636494 ATA
66 ATA
*
3636497 TGTTAGGTGAG
1 TATTAGGTGAG
3636508 TAAGATATTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 75 1.00
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (68 bp):
TATTAGGTGAGAATGTTAGGTGTGTTAGGTGATGTATTTGGTGAGAATGTTAGGTGTGTTAGGTA
ATA
Found at i:3636507 original size:34 final size:34
Alignment explanation
Indices: 3636356--3636492 Score: 274
Period size: 34 Copynumber: 4.0 Consensus size: 34
3636346 TTGGTGAGAA
3636356 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
1 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
3636390 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
1 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
3636424 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
1 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
3636458 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
1 TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
3636492 T
1 T
3636493 AATATGTTAG
Statistics
Matches: 103, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 103 1.00
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (34 bp):
TGATGTATTTGGTGAGAATGTTAGGTGTGTTAGG
Found at i:3637412 original size:48 final size:48
Alignment explanation
Indices: 3637341--3637436 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
3637331 TGTCTATCTC
3637341 ACAACGAACTATGACAATTAGTCAGTATTTCACAAAAGTGAAATCCAT
1 ACAACGAACTATGACAATTAGTCAGTATTTCACAAAAGTGAAATCCAT
3637389 ACAACGAACTATGACAATTAGTCAGTATTTCACAAAAGTGAAATCCAT
1 ACAACGAACTATGACAATTAGTCAGTATTTCACAAAAGTGAAATCCAT
3637437 CTATAGAGAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (48 bp):
ACAACGAACTATGACAATTAGTCAGTATTTCACAAAAGTGAAATCCAT
Found at i:3641328 original size:34 final size:34
Alignment explanation
Indices: 3641290--3641367 Score: 147
Period size: 34 Copynumber: 2.3 Consensus size: 34
3641280 AGCATATTAA
*
3641290 GTGTGTTAGGCGATGTATTTGGTGAGAATGTTAG
1 GTGTGTTAGGAGATGTATTTGGTGAGAATGTTAG
3641324 GTGTGTTAGGAGATGTATTTGGTGAGAATGTTAG
1 GTGTGTTAGGAGATGTATTTGGTGAGAATGTTAG
3641358 GTGTGTTAGG
1 GTGTGTTAGG
3641368 TAATATGTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.21, C:0.01, G:0.40, T:0.38
Consensus pattern (34 bp):
GTGTGTTAGGAGATGTATTTGGTGAGAATGTTAG
Found at i:3641382 original size:34 final size:34
Alignment explanation
Indices: 3641272--3641383 Score: 118
Period size: 34 Copynumber: 3.3 Consensus size: 34
3641262 GTTAAGTGTG
* * * * *
3641272 TTAGGTGAAGCATATTAAGTGTGTTAGGCGATGTA
1 TTAGGTG-AGAATGTTAGGTGTGTTAGGAGATATA
* *
3641307 TTTGGTGAGAATGTTAGGTGTGTTAGGAGATGTA
1 TTAGGTGAGAATGTTAGGTGTGTTAGGAGATATA
* *
3641341 TTTGGTGAGAATGTTAGGTGTGTTAGGTA-ATATG
1 TTAGGTGAGAATGTTAGGTGTGTTAGG-AGATATA
3641375 TTAGGTGAG
1 TTAGGTGAG
3641384 TAAGATATTT
Statistics
Matches: 68, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
34 61 0.90
35 7 0.10
ACGTcount: A:0.25, C:0.02, G:0.36, T:0.38
Consensus pattern (34 bp):
TTAGGTGAGAATGTTAGGTGTGTTAGGAGATATA
Found at i:3645902 original size:22 final size:22
Alignment explanation
Indices: 3645877--3645941 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
3645867 TTTCAAACAT
3645877 TTTCTCCCCCTTAATCAAAAAA
1 TTTCTCCCCCTTAATCAAAAAA
***
3645899 TTTCTCCCCCTTAATCAAGGCA
1 TTTCTCCCCCTTAATCAAAAAA
**
3645921 TTTCTCCCCCTTTGTCAAAAA
1 TTTCTCCCCCTTAATCAAAAA
3645942 TTAAAAAATT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.28, C:0.34, G:0.05, T:0.34
Consensus pattern (22 bp):
TTTCTCCCCCTTAATCAAAAAA
Found at i:3647840 original size:13 final size:13
Alignment explanation
Indices: 3647822--3647848 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3647812 ATAGTAACCC
3647822 ATGTATCGATACA
1 ATGTATCGATACA
3647835 ATGTATCGATACA
1 ATGTATCGATACA
3647848 A
1 A
3647849 AGAATGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3654127 original size:19 final size:19
Alignment explanation
Indices: 3654082--3654156 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
3654072 CTGCCAAGTT
**
3654082 CATGTATCGATACAATTGTT
1 CATGTATCGATACAA-TGAA
*
3654102 TATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
3654121 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
3654140 CATGTATCGATACAATG
1 CATGTATCGATACAATG
3654157 TATCGATACA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
19 37 0.73
20 14 0.27
ACGTcount: A:0.37, C:0.15, G:0.16, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:3654159 original size:13 final size:13
Alignment explanation
Indices: 3654141--3654167 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3654131 TACAATGAAC
3654141 ATGTATCGATACA
1 ATGTATCGATACA
3654154 ATGTATCGATACA
1 ATGTATCGATACA
3654167 A
1 A
3654168 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3655600 original size:51 final size:50
Alignment explanation
Indices: 3655536--3655681 Score: 159
Period size: 51 Copynumber: 3.1 Consensus size: 50
3655526 GTCCCATCAG
* *
3655536 ACATTGAATAATGTATCGATGCATCTGGGTAAAAAGACAGAATGTATCAAT
1 ACATTGAAAAATGTATCGATGCATCT-GGTAAAAAGACAGAATGTATCGAT
* * *
3655587 ACATTGAAAAATGTATCGATACA--T--T---CATAC---ATGTATCGAT
1 ACATTGAAAAATGTATCGATGCATCTGGTAAAAAGACAGAATGTATCGAT
3655627 ACATTGAAAAATGTATCGATGCATCTAGGTAAAAAGACAGAATGTATCGAT
1 ACATTGAAAAATGTATCGATGCATCT-GGTAAAAAGACAGAATGTATCGAT
3655678 ACAT
1 ACAT
3655682 CTGGGTAAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 22
0.72 0.08 0.21
Matches are distributed among these distances:
40 31 0.41
42 1 0.01
43 3 0.04
45 1 0.01
46 1 0.01
48 3 0.04
49 1 0.01
51 35 0.46
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (50 bp):
ACATTGAAAAATGTATCGATGCATCTGGTAAAAAGACAGAATGTATCGAT
Found at i:3655601 original size:20 final size:20
Alignment explanation
Indices: 3655576--3655646 Score: 106
Period size: 20 Copynumber: 3.5 Consensus size: 20
3655566 AAAAAGACAG
*
3655576 AATGTATCAATACATTGAAA
1 AATGTATCGATACATTGAAA
* *
3655596 AATGTATCGATACATTCATA
1 AATGTATCGATACATTGAAA
*
3655616 CATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
3655636 AATGTATCGAT
1 AATGTATCGAT
3655647 GCATCTAGGT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:3656414 original size:18 final size:19
Alignment explanation
Indices: 3656376--3656427 Score: 97
Period size: 19 Copynumber: 2.8 Consensus size: 19
3656366 TGAAGCATGG
3656376 AAAATGCATGGAACATAAA
1 AAAATGCATGGAACATAAA
3656395 AAAATGCATGGAACATAAA
1 AAAATGCATGGAACATAAA
3656414 AAAATGCAT-GAACA
1 AAAATGCATGGAACA
3656428 AAGGTTGTCA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 5 0.15
19 28 0.85
ACGTcount: A:0.58, C:0.12, G:0.15, T:0.15
Consensus pattern (19 bp):
AAAATGCATGGAACATAAA
Found at i:3658513 original size:3 final size:3
Alignment explanation
Indices: 3658505--3658534 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
3658495 AAACATTAGT
3658505 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3658535 ATATAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:3659755 original size:2 final size:2
Alignment explanation
Indices: 3659748--3659775 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3659738 AAACTAATGA
3659748 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3659776 TTTAATTTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3660321 original size:16 final size:16
Alignment explanation
Indices: 3660267--3660332 Score: 78
Period size: 16 Copynumber: 4.1 Consensus size: 16
3660257 CTGAATATCA
*
3660267 TTAAACTTAAAATAAT
1 TTAAATTTAAAATAAT
*
3660283 TTAAATCTAAAATAAT
1 TTAAATTTAAAATAAT
*
3660299 TTGAATTTAAAATAAT
1 TTAAATTTAAAATAAT
* * *
3660315 TAAAATTCAAAATGAT
1 TTAAATTTAAAATAAT
3660331 TT
1 TT
3660333 TAACTCGAAC
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (16 bp):
TTAAATTTAAAATAAT
Found at i:3667816 original size:79 final size:77
Alignment explanation
Indices: 3667692--3668236 Score: 419
Period size: 79 Copynumber: 7.0 Consensus size: 77
3667682 AAAAGAGGCA
* *
3667692 GGGTTGGAGTGTCCCCTC-AAAAT-ACGAGGTTGGAGTATCCC-CGAGATGAAAATTTTAATATT
1 GGGTTGGAGTAT-CCCTCAAAAATAACGGGGTTGGAGTA-CCCTCGAGATGAAAA-TTTAATATT
3667754 TTTGAAATAAAAATT
63 TTTGAAATAAAAATT
* ** *
3667769 GGGTTGAAGTATCTCCTCGGAAATAACAGGGTTGGAGTACCCTCGAGA--AAAATTTAATATTTT
1 GGGTTGGAGTATC-CCTCAAAAATAACGGGGTTGGAGTACCCTCGAGATGAAAATTTAATATTTT
* * *
3667832 GGAAAAAAAAAATG
65 TG-AAATAAAAATT
* * * * * * **
3667846 GGGTTGGAGTATCCCCTCAGAATTGATGGGGTTGGACTA-TCTCGAGATGAAAAATTTAGCATTT
1 GGGTTGGAGTAT-CCCTCAAAAATAACGGGGTTGGAGTACCCTCGAGATG-AAAATTTAATATTT
* **
3667910 TAGAAATAAAAACG
64 TTGAAATAAAAATT
* * *
3667924 GGGTTGGAGTATCCTCTCAAAATTAATGGGGTTGGAGTATCCCT-AAGATGAAAAATTTAATATT
1 GGGTTGGAGTATCC-CTCAAAAATAACGGGGTTGGAGTA-CCCTCGAGATG-AAAATTTAATATT
* **
3667988 TTTGAAGTAAAAACA
63 TTTGAAATAAAAATT
* * * *
3668003 GGGTTAGAGTATCCCTTCAAAAATAACGAGGTTGGAGTACCCCCGAGA--AAAATTCAATATTTT
1 GGGTTGGAGTATCCC-TCAAAAATAACGGGGTTGGAGTACCCTCGAGATGAAAATTTAATATTTT
* *
3668066 AGAAATAAAAATA
65 TGAAATAAAAATT
* * * * * * * *
3668079 GGGTTGGAGTATCTCCTCAGAATTGATGGGGTTAGAGTATCCC-CGAAATGATAATTTTAATACT
1 GGGTTGGAGTATC-CCTCAAAAATAACGGGGTTGGAGTA-CCCTCGAGATGA-AAATTTAATATT
*
3668143 TTTGAAATAAGAA-T
63 TTTGAAATAAAAATT
* ** * * * *
3668157 GGGTTTGGAGTATCCCCTCGAAAATAACAAGGTTGGAATATCCTCGAGATGAAAAATTGATATTT
1 GGG-TTGGAGTAT-CCCTCAAAAATAACGGGGTTGGAGTACCCTCGAGATGAAAATTTAATATTT
*
3668222 TTGGAAAGAAAAATT
64 TT-GAAATAAAAATT
3668237 TAGAAATTTG
Statistics
Matches: 372, Mismatches: 72, Indels: 45
0.76 0.15 0.09
Matches are distributed among these distances:
76 77 0.21
77 64 0.17
78 71 0.19
79 156 0.42
80 4 0.01
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (77 bp):
GGGTTGGAGTATCCCTCAAAAATAACGGGGTTGGAGTACCCTCGAGATGAAAATTTAATATTTTT
GAAATAAAAATT
Found at i:3667956 original size:155 final size:153
Alignment explanation
Indices: 3667692--3668222 Score: 499
Period size: 155 Copynumber: 3.4 Consensus size: 153
3667682 AAAAGAGGCA
* * *
3667692 GGGTTGGAGTGTCCCCTCAAAATACGAGGTTGGAGTATCCCCGAGATGAAAATTTTAATATTTTT
1 GGGTTGGAGTATCCCCTCAAAATACGAGGTTGGAGTAT-CCCGAGATGAAAAATTTAATATTTTA
* * * **
3667757 GAAATAAAAATTGGGTTGAAGTATCTCCTCGGAAA-TAACAGGGTTGGAGTA-CCCTCGAGAAAA
65 GAAATAAAAATAGGGTTGGAGTATCTCCTC-AAAATTAATGGGGTTGGAGTATCCCTCGAGAAAA
3667820 ATTTAATATTTTGGAAAAAAAAAATG
129 ATTTAATATTTT-GAAAAAAAAAATG
* * * * * **
3667846 GGGTTGGAGTATCCCCTCAGAATTGATGGGGTTGGACTATCTCGAGATGAAAAATTTAGCATTTT
1 GGGTTGGAGTATCCCCTCA-AAAT-ACGAGGTTGGAGTATCCCGAGATGAAAAATTTAATATTTT
** *
3667911 AGAAATAAAAACGGGGTTGGAGTATC-CTCTCAAAATTAATGGGGTTGGAGTATCCCTAAGATGA
64 AGAAATAAAAATAGGGTTGGAGTATCTC-CTCAAAATTAATGGGGTTGGAGTATCCCT-CGA-GA
* *
3667975 AAAATTTAATATTTTTGAAGTAAAAACA--
126 AAAATTTAATA-TTTTGAA-AAAAAAAATG
* * ** *
3668003 GGGTTAGAGTATCCCTTCAAAAATAACGAGGTTGGAGTA-CCCCCGA-GAAAAATTCAATATTTT
1 GGGTTGGAGTATCCCCTC-AAAAT-ACGAGGTTGGAGTATCCCGAGATGAAAAATTTAATATTTT
* * *
3668066 AGAAATAAAAATAGGGTTGGAGTATCTCCTCAGAATTGATGGGGTTAGAGTATCCC-CGA-AATG
64 AGAAATAAAAATAGGGTTGGAGTATCTCCTCAAAATTAATGGGGTTGGAGTATCCCTCGAGAA--
* *
3668129 ATAATTTTAATACTTTTG-AAATAAGAATG
127 A-AA-TTTAATA-TTTTGAAAAAAAAAATG
* * * *
3668158 GGTTTGGAGTATCCCCTCGAAAATAACAAGGTTGGAATATCCTCGAGATGAAAAA-TTGATATTT
1 GGGTTGGAGTATCCCCTC-AAAAT-ACGAGGTTGGAGTATCC-CGAGATGAAAAATTTAATATTT
3668222 T
63 T
3668223 TGGAAAGAAA
Statistics
Matches: 304, Mismatches: 53, Indels: 37
0.77 0.13 0.09
Matches are distributed among these distances:
151 2 0.01
153 7 0.02
154 25 0.08
155 171 0.56
156 23 0.08
157 43 0.14
158 23 0.08
159 10 0.03
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (153 bp):
GGGTTGGAGTATCCCCTCAAAATACGAGGTTGGAGTATCCCGAGATGAAAAATTTAATATTTTAG
AAATAAAAATAGGGTTGGAGTATCTCCTCAAAATTAATGGGGTTGGAGTATCCCTCGAGAAAAAT
TTAATATTTTGAAAAAAAAAATG
Found at i:3668152 original size:234 final size:233
Alignment explanation
Indices: 3667692--3668234 Score: 652
Period size: 234 Copynumber: 2.3 Consensus size: 233
3667682 AAAAGAGGCA
* * *
3667692 GGGTTGGAGTGTCCCCTCAAAAT-ACGAGGTTGGAGTATCCCCGAGATGAAAATTTTAATATTTT
1 GGGTTGGAGTATCCCCTCAAAATAACGAGGTTGGAGTATCCCTGAGATGAAAAATTTAATATTTT
** ** *
3667756 TGAAATAAAAATTGGGTTGAAGTATCTCCTCGGAAATAACAGGGTTGGAGTACCCTCGAGAAAAA
66 TGAAATAAAAACAGGGTTGAAGTATCTCCTCAAAAATAACAGGGTTGGAGTACCCCCGAGAAAAA
* * * *
3667821 TTTAATATTTTGGAAAAAAAAAATGGGGTTGGAGTATCCCCTCAGAATTGATGGGGTTGGACTAT
131 TTCAATATTTTAGAAAAAAAAAATAGGGTTGGAGTATCCCCTCAGAATTGATGGGGTTAGACTAT
* * *
3667886 CTCGAGATGAAAAATTTAGCATTTTAGAAATAAAAACG
196 CCCGAAATGAAAAATTTAACATTTTAGAAATAAAAACG
* * * *
3667924 GGGTTGGAGTATCCTCTCAAAATTAATGGGGTTGGAGTATCCCTAAGATGAAAAATTTAATATTT
1 GGGTTGGAGTATCCCCTCAAAA-TAACGAGGTTGGAGTATCCCTGAGATGAAAAATTTAATATTT
*
3667989 TTGAAGTAAAAACAGGGTT-AGAGTATC-CCTTCAAAAATAAC-GAGGTTGGAGTACCCCCGAGA
65 TTGAAATAAAAACAGGGTTGA-AGTATCTCC-TCAAAAATAACAG-GGTTGGAGTACCCCCGAGA
* *
3668051 AAAATTCAATATTTTAG-AAATAAAAATAGGGTTGGAGTATCTCCTCAGAATTGATGGGGTTAGA
127 AAAATTCAATATTTTAGAAAAAAAAAATAGGGTTGGAGTATCCCCTCAGAATTGATGGGGTTAGA
* * * * * *
3668115 GTATCCCCGAAATGATAATTTTAATACTTTT-GAAATAAGAATG
192 CTAT-CCCGAAATGAAAAATTTAACA-TTTTAGAAATAAAAACG
* * * *
3668158 GGTTTGGAGTATCCCCTCGAAAATAACAAGGTTGGAATAT-CCTCGAGATGAAAAA-TTGATATT
1 GGGTTGGAGTATCCCCTC-AAAATAACGAGGTTGGAGTATCCCT-GAGATGAAAAATTTAATATT
*
3668221 TTTGGAAAGAAAAA
64 TTT-GAAATAAAAA
3668235 TTTAGAAATT
Statistics
Matches: 263, Mismatches: 38, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
232 20 0.08
233 64 0.24
234 171 0.65
235 8 0.03
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.29
Consensus pattern (233 bp):
GGGTTGGAGTATCCCCTCAAAATAACGAGGTTGGAGTATCCCTGAGATGAAAAATTTAATATTTT
TGAAATAAAAACAGGGTTGAAGTATCTCCTCAAAAATAACAGGGTTGGAGTACCCCCGAGAAAAA
TTCAATATTTTAGAAAAAAAAAATAGGGTTGGAGTATCCCCTCAGAATTGATGGGGTTAGACTAT
CCCGAAATGAAAAATTTAACATTTTAGAAATAAAAACG
Found at i:3670231 original size:13 final size:13
Alignment explanation
Indices: 3670213--3670238 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3670203 TACACAAAGT
3670213 ATGTATCGATACA
1 ATGTATCGATACA
3670226 ATGTATCGATACA
1 ATGTATCGATACA
3670239 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3682814 original size:13 final size:13
Alignment explanation
Indices: 3682796--3682823 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3682786 TACAAAAGAT
3682796 CAATGTATCGATA
1 CAATGTATCGATA
3682809 CAATGTATCGATA
1 CAATGTATCGATA
3682822 CA
1 CA
3682824 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:3682886 original size:13 final size:13
Alignment explanation
Indices: 3682868--3682919 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
3682858 AGCTTCGTAG
3682868 CGATACATTGTAT
1 CGATACATTGTAT
3682881 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
3682900 CGATACATTGTAT
1 CGATACATTGTAT
3682913 CGATACA
1 CGATACA
3682920 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:3682900 original size:19 final size:18
Alignment explanation
Indices: 3682876--3682938 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
3682866 AGCGATACAT
3682876 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
3682895 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
3682908 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
3682927 TGTATCGATACA
1 TGTATCGATACA
3682939 GTTACGATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:3682909 original size:32 final size:32
Alignment explanation
Indices: 3682868--3682938 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
3682858 AGCTTCGTAG
3682868 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
3682900 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
3682932 CGATACA
1 CGATACA
3682939 GTTACGATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:3684086 original size:20 final size:20
Alignment explanation
Indices: 3684039--3684096 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 20
3684029 ACAGTGAGAA
3684039 ATGTATCGATACAATTGTATGC
1 ATGTATCGATAC-ATT-TATGC
*
3684061 ATGTATCGATACATTTACT-T
1 ATGTATCGATACATTTA-TGC
3684081 ATGTATCGATACATTT
1 ATGTATCGATACATTT
3684097 TCTTGGCAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 18 0.53
21 4 0.12
22 12 0.35
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTATGC
Found at i:3685150 original size:30 final size:29
Alignment explanation
Indices: 3685116--3685172 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
3685106 ATTATTAAAT
3685116 TATTA-ATTTTTAAGTAAATTTATATTATAC
1 TATTATATTTTTAA-TAAATTTA-ATTATAC
*
3685146 TATTATATTTTTAATATATTTAATTAT
1 TATTATATTTTTAATAAATTTAATTAT
3685173 TTATTTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 5 0.20
30 12 0.48
31 8 0.32
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (29 bp):
TATTATATTTTTAATAAATTTAATTATAC
Found at i:3685238 original size:18 final size:18
Alignment explanation
Indices: 3685199--3685238 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
3685189 ATATTTATAT
*
3685199 ATAAAATTAATTTGTTAT
1 ATAAAATTAATTTGTTAA
3685217 ATAAAATTAATTT-TTCAA
1 ATAAAATTAATTTGTT-AA
3685235 ATAA
1 ATAA
3685239 TTTATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
ATAAAATTAATTTGTTAA
Found at i:3689666 original size:85 final size:85
Alignment explanation
Indices: 3689517--3689715 Score: 213
Period size: 85 Copynumber: 2.3 Consensus size: 85
3689507 TTAAACTAAC
* * * * * *
3689517 AAGTCAACAAAGGATAAAAAGGATTTACTTGGGACTAAACCTATAGATAAACAATGGATAAAAAA
1 AAGTCAACAAAGGAT-AAAAGGATTTACCTGGGACTAAACCGAAAGATAAAAAAAGGAGAAAAAA
*
3689582 GTTGATCAACACT-GAACCAA
65 GTTGACCAACACTGGAACCAA
* * * * *
3689602 GAAGTTAGCAAAAGATAAAAGGATTTACCTGGGACTAAGCCGACAAG-TAAAAAAAGGAGGAAAA
1 -AAGTCAACAAAGGATAAAAGGATTTACCTGGGACTAAACCGA-AAGATAAAAAAAGGAGAAAAA
* * * *
3689666 AGTTGACCAAGATTGGATCGAA
64 AGTTGACCAACACTGGAACCAA
3689688 AAGTCAACAAAGGATAAAAGGATTTACC
1 AAGTCAACAAAGGATAAAAGGATTTACC
3689716 CAGTAAGGTT
Statistics
Matches: 92, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
85 73 0.79
86 19 0.21
ACGTcount: A:0.48, C:0.13, G:0.21, T:0.18
Consensus pattern (85 bp):
AAGTCAACAAAGGATAAAAGGATTTACCTGGGACTAAACCGAAAGATAAAAAAAGGAGAAAAAAG
TTGACCAACACTGGAACCAA
Found at i:3690025 original size:82 final size:81
Alignment explanation
Indices: 3689919--3690115 Score: 245
Period size: 82 Copynumber: 2.4 Consensus size: 81
3689909 AGTCTAGGCG
* * * *
3689919 AAACTAATAAAGCCAAT-GAGTTAGAAAGGTTGACCAGGGCGAAATCGATAAAGTTAACCAATTA
1 AAACTGATAAAGCCAATAG-GTTAGAAGGGTTGACCAGGGCAAAATCGATAAAGTCAACCAA-TA
3689983 A-AAGGGTTGGCCAGGGAA
64 AGAA-GGTTGGCCAGGGAA
*
3690001 AAACTGATAAAGCCAATAGGTTAGAAGGGTTGACTAGGGCAAAATCGATAAAGTCAACCAATAAG
1 AAACTGATAAAGCCAATAGGTTAGAAGGGTTGACCAGGGCAAAATCGATAAAGTCAACCAATAAG
* **
3690066 AAGGTTGGCTAGGGCG
66 AAGGTTGGCCAGGGAA
* * **
3690082 AAACCGATAAAGCCAACAAATTAGAAGGGTTGAC
1 AAACTGATAAAGCCAATAGGTTAGAAGGGTTGAC
3690116 TAAGGAAAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
81 44 0.44
82 56 0.55
83 1 0.01
ACGTcount: A:0.42, C:0.14, G:0.26, T:0.18
Consensus pattern (81 bp):
AAACTGATAAAGCCAATAGGTTAGAAGGGTTGACCAGGGCAAAATCGATAAAGTCAACCAATAAG
AAGGTTGGCCAGGGAA
Found at i:3690132 original size:41 final size:41
Alignment explanation
Indices: 3689870--3690133 Score: 162
Period size: 41 Copynumber: 6.5 Consensus size: 41
3689860 AGAATGGCTA
* * * * *
3689870 ACTAGGGCAAAACTAATAAAGACAACTAATTA-AAAGGTTAG
1 ACTAGGGAAAAACTGATAAAGCCAACAAATTAGAAGGGTT-G
* * ** * *
3689911 TCTAGGCG--AAACTAATAAAGCCAATGAGTTAGAAAGGTTG
1 ACTAGG-GAAAAACTGATAAAGCCAACAAATTAGAAGGGTTG
* ** ** * *
3689951 ACCAGGGCGAAA-TCGATAAAGTTAACCAATTAAAAGGGTTG
1 ACTAGGGAAAAACT-GATAAAGCCAACAAATTAGAAGGGTTG
* * * **
3689992 GCCAGGGAAAAACTGATAAAGCCAATAGGTTAGAAGGGTTG
1 ACTAGGGAAAAACTGATAAAGCCAACAAATTAGAAGGGTTG
* * * *
3690033 ACTAGGGCAAAA-TCGATAAAGTCAACCAATAAGAA-GGTTG
1 ACTAGGGAAAAACT-GATAAAGCCAACAAATTAGAAGGGTTG
* ** *
3690073 GCTAGGGCGAAACCGATAAAGCCAACAAATTAGAAGGGTTG
1 ACTAGGGAAAAACTGATAAAGCCAACAAATTAGAAGGGTTG
*
3690114 ACTAAGGAAAAACTGATAAA
1 ACTAGGGAAAAACTGATAAA
3690134 ATCATTCAAG
Statistics
Matches: 169, Mismatches: 45, Indels: 18
0.73 0.19 0.08
Matches are distributed among these distances:
39 1 0.01
40 59 0.35
41 107 0.63
42 2 0.01
ACGTcount: A:0.44, C:0.14, G:0.24, T:0.18
Consensus pattern (41 bp):
ACTAGGGAAAAACTGATAAAGCCAACAAATTAGAAGGGTTG
Found at i:3690133 original size:81 final size:81
Alignment explanation
Indices: 3689870--3690117 Score: 286
Period size: 81 Copynumber: 3.0 Consensus size: 81
3689860 AGAATGGCTA
* * * * *
3689870 ACTAGGGCAAAA-CTAATAAAGACAACTAATTAAAAGGTTAGTCTA-GGCGAAACTAATAAAGCC
1 ACTAGGGCAAAATC-GATAAAGTCAACCAATTAAAAGGTT-GGCTAGGGCGAAACTGATAAAGCC
* *
3689933 AATGAGTTAGAAAGGTTG
64 AATAAGTTAGAAGGGTTG
* * * * **
3689951 ACCAGGGCGAAATCGATAAAGTTAACCAATTAAAAGGGTTGGCCAGGGAAAAACTGATAAAGCCA
1 ACTAGGGCAAAATCGATAAAGTCAACCAATTAAAA-GGTTGGCTAGGGCGAAACTGATAAAGCCA
*
3690016 ATAGGTTAGAAGGGTTG
65 ATAAGTTAGAAGGGTTG
*
3690033 ACTAGGGCAAAATCGATAAAGTCAACCAA-TAAGAAGGTTGGCTAGGGCGAAACCGATAAAGCCA
1 ACTAGGGCAAAATCGATAAAGTCAACCAATTAA-AAGGTTGGCTAGGGCGAAACTGATAAAGCCA
* *
3690097 ACAAATTAGAAGGGTTG
65 ATAAGTTAGAAGGGTTG
3690114 ACTA
1 ACTA
3690118 AGGAAAAACT
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
81 76 0.55
82 63 0.45
ACGTcount: A:0.43, C:0.14, G:0.25, T:0.19
Consensus pattern (81 bp):
ACTAGGGCAAAATCGATAAAGTCAACCAATTAAAAGGTTGGCTAGGGCGAAACTGATAAAGCCAA
TAAGTTAGAAGGGTTG
Found at i:3690281 original size:35 final size:35
Alignment explanation
Indices: 3690242--3690991 Score: 556
Period size: 35 Copynumber: 21.2 Consensus size: 35
3690232 ATGACGATAA
* *
3690242 AAAGAGTTTGACCAGACATAGTCAAACGATGATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
* * *
3690277 AAAGAGTTTGTCAAGATATAGTCAAACGATGATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
** *
3690312 AAAGAGTTCAACCAGATACAGTCAAATGATGATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
* *
3690347 AAAGAGTTTGACCAAATATAGTCAAACGATGATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
*
3690382 AAAGAGTTCGACCAGATACAGTCAAACGATGATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
** ** *
3690417 AAATTGTTTGACCAGATACAACCAAACGATGATGA
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
* * *
3690452 AAAGAGTTCGACCAGATACA-TCCAAATGATGATAG
1 AAAGAGTTTGACCAGATACAGT-CAAACGATGATGG
*
3690487 AAAGAGTTGGACCAGATACAGTCAAACGATGATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
** ** * * *
3690522 AGAA-AGTTCAAATAGATATAGTCAAACGATGGT-A
1 A-AAGAGTTTGACCAGATACAGTCAAACGATGATGG
* * * *
3690556 AGAAGAGTTCGACCAGGTACAGTCAAATGATGGTGGG
1 A-AAGAGTTTGACCAGATACAGTCAAACGATGAT-GG
* * *
3690593 AAA-AGTTTGACCAAATACAGTCAAACTATGGTGGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGAT-GG
* *
3690628 AAA-AGTTTGACTAGATAAAGTCAAACGATG--GG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
* * * * *
3690660 -GAGAGTTGGACTAGATATAGTCAAACGATTTCGACCAAATACAGT
1 AAAGAGTTTGACCAGATACAGTCAAACGA--T-G-----AT---GG
* *
3690705 GAAAGA-TTTCGACCAAATACAGTCGAACGAT-AGTGG
1 -AAAGAGTTT-GACCAGATACAGTCAAACGATGA-TGG
* * * * *
3690741 AAAGAG-TTGAACCAGTTATAGTCGAACAATGGTGG
1 AAAGAGTTTG-ACCAGATACAGTCAAACGATGATGG
* * * *
3690776 AAAGAGTTCGACCAAATACAGCCAAACAATGATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
* * * * *
3690811 AAAGAGTTTAACTAGATACAGCCAAATGATAATGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
* * * *
3690846 GAAGAATTTGACCAGATACGGCCAAACGATGATGGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGAT-GG
* *
3690882 AAA-AGTTCGACCAGATTCAGTCAAACGATGATGGG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGAT-GG
* * * *
3690917 GAA-AGTTTGACCAGATATAGT-AGAATGATGGTGG
1 AAAGAGTTTGACCAGATACAGTCA-AACGATGATGG
* * * *
3690951 AAAAAGTTTGACCAGATACAGTCGAACGATAATAG
1 AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
3690986 AAAGAG
1 AAAGAG
3690992 GTTTAACTAG
Statistics
Matches: 570, Mismatches: 113, Indels: 64
0.76 0.15 0.09
Matches are distributed among these distances:
31 1 0.00
32 25 0.04
34 11 0.02
35 495 0.87
36 12 0.02
37 1 0.00
38 1 0.00
39 1 0.00
45 2 0.00
46 2 0.00
47 19 0.03
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.21
Consensus pattern (35 bp):
AAAGAGTTTGACCAGATACAGTCAAACGATGATGG
Found at i:3691025 original size:22 final size:22
Alignment explanation
Indices: 3690982--3691029 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
3690972 TCGAACGATA
*
3690982 ATAGAAAGAGGTTTAACTAGAT
1 ATAGAAAGAGGTTTAACCAGAT
* *
3691004 GATAGGAAGA-GTTTGACCAGAT
1 -ATAGAAAGAGGTTTAACCAGAT
3691026 ATAG
1 ATAG
3691030 TTAAACGATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 4 0.18
22 10 0.45
23 8 0.36
ACGTcount: A:0.42, C:0.06, G:0.27, T:0.25
Consensus pattern (22 bp):
ATAGAAAGAGGTTTAACCAGAT
Found at i:3691049 original size:58 final size:56
Alignment explanation
Indices: 3690955--3691064 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 56
3690945 TGGTGGAAAA
*
3690955 AGTTTGACCAGATACAGTCGAACGATAATAGAAAGAGGTTTAACTAGATGATAGGAAG
1 AGTTTGACCAGATACAGTCAAACGATAATAGAAAGA-GTTTAACTAGAT-ATAGGAAG
* * * * *
3691013 AGTTTGACCAGATATAGTTAAACGATGATGGGAAGAGTTTAACTAGATATAG
1 AGTTTGACCAGATACAGTCAAACGATAATAGAAAGAGTTTAACTAGATATAG
3691065 TCAAACGATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
56 4 0.09
57 12 0.26
58 30 0.65
ACGTcount: A:0.40, C:0.09, G:0.25, T:0.25
Consensus pattern (56 bp):
AGTTTGACCAGATACAGTCAAACGATAATAGAAAGAGTTTAACTAGATATAGGAAG
Found at i:3691119 original size:128 final size:127
Alignment explanation
Indices: 3690873--3691130 Score: 306
Period size: 128 Copynumber: 2.0 Consensus size: 127
3690863 ACGGCCAAAC
* *
3690873 GATGATGGGAAAAGTTCGACCAGATTCAGTCAAACGATGATGGGGAAAGTTTGACCAGATATAGT
1 GATGATAGGAAAAGTTCGACCAGATTCAGTCAAACGATGATGGGGAAAGTTTAACCAGATATAGT
* * * *
3690938 AGAATGATGGTGGAAAAAGTTTGACCAGATACAGTCGAACGATAATAGAAAGAGGTTTAACTA
66 AGAACGATGGTGGAAAAAGTTTGACCAAATACAGTCAAACGATAATAGAAAGA-GTTCAACTA
* * * *
3691001 GATGATAGGAAGAGTTTGACCAGATAT-AGTTAAACGATGAT-GGGAAGAGTTTAACTAGATATA
1 GATGATAGGAAAAGTTCGACCAGAT-TCAGTCAAACGATGATGGGGAA-AGTTTAACCAGATATA
** * ** * *
3691064 GTCA-AACGATGGTGGAATGAGTTTGACCAAATACAGTCAAATGATGGTGGGAAGAGTTCAACTA
64 GT-AGAACGATGGTGGAAAAAGTTTGACCAAATACAGTCAAACGATAATAGAAAGAGTTCAACTA
3691128 GAT
1 GAT
3691131 ACAGTCGAAC
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
127 16 0.15
128 92 0.84
129 2 0.02
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.24
Consensus pattern (127 bp):
GATGATAGGAAAAGTTCGACCAGATTCAGTCAAACGATGATGGGGAAAGTTTAACCAGATATAGT
AGAACGATGGTGGAAAAAGTTTGACCAAATACAGTCAAACGATAATAGAAAGAGTTCAACTA
Found at i:3691133 original size:163 final size:162
Alignment explanation
Indices: 3690845--3691143 Score: 379
Period size: 163 Copynumber: 1.8 Consensus size: 162
3690835 AATGATAATG
* *
3690845 GGAAGAATTTGACCAGATACGGCCAAACGATGATGGGAAAAGTTCGACCAGATTCAGTCAAACGA
1 GGAAGAATTTGACCAGATACAGCCAAACGATGATGGGAAAAGTTCAACCAGATTCAGTCAAACGA
* * **
3690910 TGATGGGGAAAGTTTGACCAGATATAGTAGAATGATGGTGGAAAAAGTTTGACCAGATACAGTCG
66 TGA-GGGGAAAGTTTGACCAAATACAGTAGAATGATGGTGGAAAAAGTTCAACCAGATACAGTCG
3690975 AACGATAATAGAAAGAGGTTTAACTAGATGATA
130 AACGATAATAGAAAGAGGTTTAACTAGATGATA
* * ** * * *
3691008 GGAAGAGTTTGACCAGATATAGTTAAACGATGATGGGAAGAGTTTAACTAGATAT-AGTCAAACG
1 GGAAGAATTTGACCAGATACAGCCAAACGATGATGGGAAAAGTTCAACCAGAT-TCAGTCAAACG
* * * *
3691072 ATG-GTGGAATGAGTTTGACCAAATACAGTCA-AATGATGGTGGGAAGAGTTCAACTAGATACAG
65 ATGAGGGGAA--AGTTTGACCAAATACAGT-AGAATGATGGTGGAAAAAGTTCAACCAGATACAG
3691135 TCGAACGAT
127 TCGAACGAT
3691144 GATGGAAAAA
Statistics
Matches: 115, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
161 5 0.04
163 108 0.94
164 2 0.02
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (162 bp):
GGAAGAATTTGACCAGATACAGCCAAACGATGATGGGAAAAGTTCAACCAGATTCAGTCAAACGA
TGAGGGGAAAGTTTGACCAAATACAGTAGAATGATGGTGGAAAAAGTTCAACCAGATACAGTCGA
ACGATAATAGAAAGAGGTTTAACTAGATGATA
Found at i:3691282 original size:35 final size:35
Alignment explanation
Indices: 3691001--3691279 Score: 301
Period size: 35 Copynumber: 8.0 Consensus size: 35
3690991 GGTTTAACTA
* *
3691001 GATGATAGGAAGAGTTTGACCAGATATAGTTAAAC
1 GATGATGGGAAGAGTTTGACCAGATATAGTCAAAC
* *
3691036 GATGATGGGAAGAGTTTAACTAGATATAGTCAAAC
1 GATGATGGGAAGAGTTTGACCAGATATAGTCAAAC
* * * *
3691071 GATGGT-GGAATGAGTTTGACCAAATACAGTCAAAT
1 GATGATGGGAA-GAGTTTGACCAGATATAGTCAAAC
* ** * * *
3691106 GATGGTGGGAAGAGTTCAACTAGATACAGTCGAAC
1 GATGATGGGAAGAGTTTGACCAGATATAGTCAAAC
* * * *
3691141 GATGATGGAAAAAGTTTGACCAGATACAGTCGAAC
1 GATGATGGGAAGAGTTTGACCAGATATAGTCAAAC
* * *
3691176 GATGA-GGAAAGATGTTTGACCAGATATAGTGAAAT
1 GATGATGGGAAGA-GTTTGACCAGATATAGTCAAAC
* *
3691211 GATGATAGGAAGAGTTTGACCAGATATAGTCAAAT
1 GATGATGGGAAGAGTTTGACCAGATATAGTCAAAC
* *
3691246 GATGATGGGAAGAGTGTGACCAGATATAATCAAA
1 GATGATGGGAAGAGTTTGACCAGATATAGTCAAA
3691280 TGAGAGAAAA
Statistics
Matches: 207, Mismatches: 33, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
34 10 0.05
35 188 0.91
36 9 0.04
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24
Consensus pattern (35 bp):
GATGATGGGAAGAGTTTGACCAGATATAGTCAAAC
Found at i:3691635 original size:90 final size:90
Alignment explanation
Indices: 3691521--3691775 Score: 411
Period size: 90 Copynumber: 2.8 Consensus size: 90
3691511 CGAGATATCT
* **
3691521 TTGCCCCAAGAAAATCTGGCTTTGTGATGCATCAATACCATCTAGTGGTTGAATGAAGGGGATAT
1 TTGCCCCAAGGAAATCAAGCTTTGTGATGCATCAATACCATCTAGTGGTTGAATGAAGGGGATAT
* *
3691586 GATTGGGAATGTGTGGGCTGCACTC
66 GATTGGGAATGTATGGGCTGCACCC
*
3691611 TTGCCCCAAGGAAATCAAGCTTTGTGATGCATCAATACCATCTAGTGATTGAATGAAGGGGATAT
1 TTGCCCCAAGGAAATCAAGCTTTGTGATGCATCAATACCATCTAGTGGTTGAATGAAGGGGATAT
* *
3691676 GACTAGGAATGTATGGGCTGCACCC
66 GATTGGGAATGTATGGGCTGCACCC
* * *
3691701 TTGCCCCAAAGAAATCAAGCTTTGTGATGCATCAATACCATATAGTAGTTGAATGAAGGGGATAT
1 TTGCCCCAAGGAAATCAAGCTTTGTGATGCATCAATACCATCTAGTGGTTGAATGAAGGGGATAT
3691766 GATTGGGAAT
66 GATTGGGAAT
3691776 ATGTAGTTCC
Statistics
Matches: 151, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
90 151 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (90 bp):
TTGCCCCAAGGAAATCAAGCTTTGTGATGCATCAATACCATCTAGTGGTTGAATGAAGGGGATAT
GATTGGGAATGTATGGGCTGCACCC
Found at i:3691902 original size:77 final size:77
Alignment explanation
Indices: 3691803--3691968 Score: 305
Period size: 77 Copynumber: 2.2 Consensus size: 77
3691793 TTCCATTAAC
* *
3691803 AGCCAAAACAAAAAATGATGACAAGTTAGAGAAAAAGAACATAATAGGGAATATATTTTTCTATA
1 AGCCAAAACAAAAAATGATGACAAGTTAGAGAAAAAGAACATAATAGGGAATATATGTTTCTAGA
3691868 ATTTTTATCAAT
66 ATTTTTATCAAT
*
3691880 AGCCAAAACAAAAAATGTTGACAAGTTAGAGAAAAAGAACATAATAGGGAATATATGTTTCTAGA
1 AGCCAAAACAAAAAATGATGACAAGTTAGAGAAAAAGAACATAATAGGGAATATATGTTTCTAGA
3691945 ATTTTTATCAAT
66 ATTTTTATCAAT
3691957 AGCCAAAACAAA
1 AGCCAAAACAAA
3691969 CTGATGATAG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 86 1.00
ACGTcount: A:0.50, C:0.10, G:0.14, T:0.26
Consensus pattern (77 bp):
AGCCAAAACAAAAAATGATGACAAGTTAGAGAAAAAGAACATAATAGGGAATATATGTTTCTAGA
ATTTTTATCAAT
Found at i:3692262 original size:75 final size:76
Alignment explanation
Indices: 3692180--3692344 Score: 190
Period size: 75 Copynumber: 2.2 Consensus size: 76
3692170 TTAATAGCTG
* ** * * * *
3692180 AAACAAACTGACAAGAT-GCTGACGAAGATAATCATGATGGGGAATACGTAG-TTCTAAAATTTC
1 AAACAAACTAACAAG-TGGCTGAAAAACATAATCATAATGGGAAATAAGTAGTTTCTAAAATTTC
* *
3692243 CATTAAAAGTCA
65 CATCAAAAGCCA
* * * *
3692255 AAACAAACTAACAAGTGGCTGAAAAACATGATCATAATGGGAAATAAGTGGTTTTTAAAATTTTC
1 AAACAAACTAACAAGTGGCTGAAAAACATAATCATAATGGGAAATAAGTAGTTTCTAAAATTTCC
3692320 ATCAAAAGCCA
66 ATCAAAAGCCA
3692331 AAACAAACTAACAA
1 AAACAAACTAACAA
3692345 AAATTATGAT
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
74 1 0.01
75 40 0.53
76 34 0.45
ACGTcount: A:0.47, C:0.15, G:0.16, T:0.23
Consensus pattern (76 bp):
AAACAAACTAACAAGTGGCTGAAAAACATAATCATAATGGGAAATAAGTAGTTTCTAAAATTTCC
ATCAAAAGCCA
Found at i:3692561 original size:60 final size:61
Alignment explanation
Indices: 3692495--3692626 Score: 151
Period size: 61 Copynumber: 2.2 Consensus size: 61
3692485 TACAAAATGG
* *** *
3692495 CTTAGGTGAAACCAAGACTTAGC-AAAATGGGTTGGACAAAACCAAAAACCTAAACAATAA
1 CTTAGGTGAAACCAAGACTCAGCGAAAATGACCTGGACAAAACCAAAAACATAAACAATAA
* * * * *
3692555 CTTAGGTAAAACTAAGACTCATCGAAAATGACCTGGATAAAACCAAAAACATAAACAATGA
1 CTTAGGTGAAACCAAGACTCAGCGAAAATGACCTGGACAAAACCAAAAACATAAACAATAA
3692616 CTT-GAGTGAAA
1 CTTAG-GTGAAA
3692627 TCAAAATAGT
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
60 20 0.34
61 39 0.66
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.18
Consensus pattern (61 bp):
CTTAGGTGAAACCAAGACTCAGCGAAAATGACCTGGACAAAACCAAAAACATAAACAATAA
Found at i:3693304 original size:87 final size:87
Alignment explanation
Indices: 3693213--3693448 Score: 248
Period size: 87 Copynumber: 2.7 Consensus size: 87
3693203 CAACTGTGAG
* * *
3693213 CATCAATAAA-AGGCAAATGCAAATTATATGATGCAGATACCAATGTTATGTAAAATGCAAATAT
1 CATCAATAAAGAGGCAAATGCATATTAAATGATGCAAATACCAATGTTAT-TAAAATGCAAA-AT
*
3693277 GCATG-AAACA-ATGCAAATACAAA
64 GCATGTAAA-AGATACAAATACAAA
* * * **
3693300 CATCAGTAAAGTGGCAAATGCATATTAAATGATGCAAATGCCAATGTTATTTGAATGC-AAATGC
1 CATCAATAAAGAGGCAAATGCATATTAAATGATGCAAATACCAATGTTATTAAAATGCAAAATGC
* *
3693364 ATGTAAAATGATACAAATGCAAG
66 ATGTAAAA-GATACAAATACAAA
* * * *
3693387 CATCAACAAAGGGGCAAACGCATA-TACAATGATGCAAATACCAATGTCATCTAAAATGCAAA
1 CATCAATAAAGAGGCAAATGCATATTA-AATGATGCAAATACCAATGTTAT-TAAAATGCAAA
3693449 CGTAGGTTAG
Statistics
Matches: 123, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
85 8 0.07
86 7 0.06
87 66 0.54
88 40 0.33
89 2 0.02
ACGTcount: A:0.46, C:0.15, G:0.16, T:0.23
Consensus pattern (87 bp):
CATCAATAAAGAGGCAAATGCATATTAAATGATGCAAATACCAATGTTATTAAAATGCAAAATGC
ATGTAAAAGATACAAATACAAA
Found at i:3693338 original size:20 final size:20
Alignment explanation
Indices: 3693313--3693384 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
3693303 CAGTAAAGTG
*
3693313 GCAAATGCATATTAAATGAT
1 GCAAATGCATGTTAAATGAT
**
3693333 GCAAATGCCAATGTTATTTGAAT
1 GCAAATG-C-ATGTTAAATG-AT
*
3693356 GCAAATGCATGTAAAATGAT
1 GCAAATGCATGTTAAATGAT
*
3693376 ACAAATGCA
1 GCAAATGCA
3693385 AGCATCAACA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
20 17 0.40
21 8 0.19
22 8 0.19
23 9 0.21
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (20 bp):
GCAAATGCATGTTAAATGAT
Found at i:3694582 original size:6 final size:6
Alignment explanation
Indices: 3694571--3694640 Score: 52
Period size: 6 Copynumber: 10.8 Consensus size: 6
3694561 TGCTTTTGCA
* *
3694571 TTTTTG TTTTTG TTTTTG TTTTTTT TCTTTTG TTTCTTA TTTTTG TCTTTCT-
1 TTTTTG TTTTTG TTTTTG -TTTTTG T-TTTTG TTT-TTG TTTTTG T-TTT-TG
*
3694623 TTTTCTC TTTTTG TTTTT
1 TTTT-TG TTTTTG TTTTT
3694641 CTTATTTAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
6 29 0.55
7 23 0.43
8 1 0.02
ACGTcount: A:0.01, C:0.09, G:0.09, T:0.81
Consensus pattern (6 bp):
TTTTTG
Found at i:3694588 original size:12 final size:12
Alignment explanation
Indices: 3694571--3694640 Score: 52
Period size: 13 Copynumber: 5.4 Consensus size: 12
3694561 TGCTTTTGCA
3694571 TTTTTGTTTTTG
1 TTTTTGTTTTTG
*
3694583 TTTTTGTTTTTTT
1 TTTTTG-TTTTTG
*
3694596 TCTTTTGTTTCTTA
1 T-TTTTGTTT-TTG
3694610 TTTTTGTCTTTCT-
1 TTTTTGT-TTT-TG
*
3694623 TTTTCTCTTTTTG
1 TTTT-TGTTTTTG
3694636 TTTTT
1 TTTTT
3694641 CTTATTTAAA
Statistics
Matches: 48, Mismatches: 3, Indels: 14
0.74 0.05 0.22
Matches are distributed among these distances:
12 8 0.17
13 27 0.56
14 13 0.27
ACGTcount: A:0.01, C:0.09, G:0.09, T:0.81
Consensus pattern (12 bp):
TTTTTGTTTTTG
Found at i:3694601 original size:9 final size:9
Alignment explanation
Indices: 3694583--3694634 Score: 50
Period size: 9 Copynumber: 5.3 Consensus size: 9
3694573 TTTGTTTTTG
*
3694583 TTTTTGTTT
1 TTTTTCTTT
3694592 TTTTTCTTT
1 TTTTTCTTT
*
3694601 TGTTTCTTAT
1 TTTTTCTT-T
3694611 TTTTGTCTTT
1 TTTT-TCTTT
3694621 CTTTTTCTCTT
1 -TTTTTCT-TT
3694632 TTT
1 TTT
3694635 GTTTTTCTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
9 15 0.42
10 11 0.31
11 10 0.28
ACGTcount: A:0.02, C:0.12, G:0.06, T:0.81
Consensus pattern (9 bp):
TTTTTCTTT
Found at i:3694641 original size:20 final size:19
Alignment explanation
Indices: 3694571--3694643 Score: 60
Period size: 20 Copynumber: 3.7 Consensus size: 19
3694561 TGCTTTTGCA
* *
3694571 TTTTTGTTTTTGTTTTTGT
1 TTTTTGTTTTTCTTTTTCT
*
3694590 TTTTT-TTCTTT-TGTTTCTT
1 TTTTTGTT-TTTCTTTTTC-T
*
3694609 ATTTTTGTCTTTCTTTTTCT
1 -TTTTTGTTTTTCTTTTTCT
3694629 CTTTTTGTTTTTCTT
1 -TTTTTGTTTTTCTT
3694644 ATTTAAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
18 6 0.14
19 9 0.21
20 22 0.51
21 6 0.14
ACGTcount: A:0.01, C:0.10, G:0.08, T:0.81
Consensus pattern (19 bp):
TTTTTGTTTTTCTTTTTCT
Found at i:3697593 original size:89 final size:90
Alignment explanation
Indices: 3697436--3697613 Score: 304
Period size: 89 Copynumber: 2.0 Consensus size: 90
3697426 CACTGCTTGT
* *
3697436 CATCCTTCCTTCTATAAATTAAGGATGATTTGCAGCCAATAAGAGCTTTTGGCAAGGGAGAGATC
1 CATCATTCCTTCTATAAATTAAGGATGATTTGCAGCCAATAAGAGCTTTTGGCAAGAGAGAGATC
3697501 AATTGAAAAAGAAGAGAAAAAAAGC
66 AATTGAAAAAGAAGAGAAAAAAAGC
* * *
3697526 CATCATTCCTTCTAT-AATTGAGGATGATTTGCTGCCAATAAGAGCTTTTGGCAAGAGAGGGATC
1 CATCATTCCTTCTATAAATTAAGGATGATTTGCAGCCAATAAGAGCTTTTGGCAAGAGAGAGATC
3697590 AATTGAAAAAGAAGAGAAAAAAAG
66 AATTGAAAAAGAAGAGAAAAAAAG
3697614 AGAGAAAGAA
Statistics
Matches: 83, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
89 69 0.83
90 14 0.17
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.24
Consensus pattern (90 bp):
CATCATTCCTTCTATAAATTAAGGATGATTTGCAGCCAATAAGAGCTTTTGGCAAGAGAGAGATC
AATTGAAAAAGAAGAGAAAAAAAGC
Found at i:3697645 original size:11 final size:11
Alignment explanation
Indices: 3697594--3697656 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
3697584 GGGATCAATT
*
3697594 GAAAAAGAAGA
1 GAAAAAAAAGA
3697605 GAAAAAAAGAGA
1 GAAAAAAA-AGA
*
3697617 GAAAGAAAAGA
1 GAAAAAAAAGA
*
3697628 AAAAAAAAAGA
1 GAAAAAAAAGA
* *
3697639 GACAAAATAGA
1 GAAAAAAAAGA
3697650 GACAAAA
1 GA-AAAA
3697657 TTAGAAATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
11 29 0.69
12 13 0.31
ACGTcount: A:0.75, C:0.03, G:0.21, T:0.02
Consensus pattern (11 bp):
GAAAAAAAAGA
Found at i:3697656 original size:24 final size:24
Alignment explanation
Indices: 3697596--3697644 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
3697586 GATCAATTGA
*
3697596 AAAAGAAGAGAAAAAAAGAGAGAAAG
1 AAAAGAA-A-AAAAAAAGAGACAAAG
3697622 AAAAGAAAAAAAAAAGAGACAAA
1 AAAAGAAAAAAAAAAGAGACAAA
3697645 ATAGAGACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 14 0.64
25 1 0.05
26 7 0.32
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (24 bp):
AAAAGAAAAAAAAAAGAGACAAAG
Found at i:3698717 original size:27 final size:27
Alignment explanation
Indices: 3698679--3698749 Score: 142
Period size: 27 Copynumber: 2.6 Consensus size: 27
3698669 GATTGAAAAC
3698679 GGGGTTGGAGTGTCCCCTCGGAGGAAT
1 GGGGTTGGAGTGTCCCCTCGGAGGAAT
3698706 GGGGTTGGAGTGTCCCCTCGGAGGAAT
1 GGGGTTGGAGTGTCCCCTCGGAGGAAT
3698733 GGGGTTGGAGTGTCCCC
1 GGGGTTGGAGTGTCCCC
3698750 GGTGAATAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.13, C:0.20, G:0.45, T:0.23
Consensus pattern (27 bp):
GGGGTTGGAGTGTCCCCTCGGAGGAAT
Found at i:3703794 original size:13 final size:13
Alignment explanation
Indices: 3703776--3703801 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3703766 ACAAAGATCG
3703776 ATGTATCGATACA
1 ATGTATCGATACA
3703789 ATGTATCGATACA
1 ATGTATCGATACA
3703802 TTCTACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3704850 original size:13 final size:13
Alignment explanation
Indices: 3704832--3704859 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
3704822 ATACAAAGAT
3704832 CAATGTATCGATA
1 CAATGTATCGATA
3704845 CAATGTATCGATA
1 CAATGTATCGATA
3704858 CA
1 CA
3704860 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:3705698 original size:55 final size:52
Alignment explanation
Indices: 3705638--3706173 Score: 252
Period size: 53 Copynumber: 10.4 Consensus size: 52
3705628 ACCAATGCAT
* * *
3705638 TGATTCACGGCCAACGATATTAGGTTTAAAGATGAGAAAAAGGATGTCAATGTGC
1 TGATTCACGGCCAACGACATTAGGTTTAAAGATGAG---AAGAATGCCAATGTGC
* * ** *
3705693 TGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGCCAATGTGC
1 TGATTCACGGCCAACGACATTAGGTTTAAAGATGAGAAGAATGCCAATGTGC
* * ** *
3705745 TGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAG-GCGCCAATATGC
1 TGATTCACGGCCAACGACATTAGG-TTTAAAGATGA-GAAGAATGCCAATGTGC
* * * *** * * *
3705798 TGATTCAAGGCCAGCGATATTATACTTAAAGAT--GAAG-GTACCAATATGC
1 TGATTCACGGCCAACGACATTAGGTTTAAAGATGAGAAGAATGCCAATGTGC
* * * * *
3705847 TGATTCAAGGCCAACGACATT-GGACTTAAAAGATGACAA-AGGTGCCAATATGC
1 TGATTCACGGCCAACGACATTAGG--TTTAAAGATGAGAAGA-ATGCCAATGTGC
* * * * * *
3705900 TGATTTAAGGCCAGCGATATT-GGACTTAAAGAT--GAAG-GTGCCAATGTGC
1 TGATTCACGGCCAACGACATTAGG-TTTAAAGATGAGAAGAATGCCAATGTGC
* * * * ** *
3705949 TGATTCAAGGCCACCGACATT-GGACTTAAAAGATGACAA-AGGCGCCAATATGC
1 TGATTCACGGCCAACGACATTAGG--TTTAAAGATGAGAAGA-ATGCCAATGTGC
* * * *
3706002 TGATTCAAGGCCAACGATATT-GGACTTAAAGAT--GAAG-GTGCCAATGTGC
1 TGATTCACGGCCAACGACATTAGG-TTTAAAGATGAGAAGAATGCCAATGTGC
* * * * * *
3706051 TGATTCAAGGCCAGCGACATT-GGACTTAAAAGATGACAA-AGGTGCCAATATGC
1 TGATTCACGGCCAACGACATTAGG--TTTAAAGATGAGAAGA-ATGCCAATGTGC
* * * * *
3706104 TGATTCAAGGCCAGCGATATT-GGACTTAAAGAT--GAAG-GTGCCAATGTGC
1 TGATTCACGGCCAACGACATTAGG-TTTAAAGATGAGAAGAATGCCAATGTGC
* *
3706153 TGATTCAAGGCCAGCGACATT
1 TGATTCACGGCCAACGACATT
3706174 GGACTTAAAA
Statistics
Matches: 387, Mismatches: 73, Indels: 48
0.76 0.14 0.09
Matches are distributed among these distances:
49 126 0.33
50 27 0.07
52 68 0.18
53 132 0.34
54 4 0.01
55 30 0.08
ACGTcount: A:0.34, C:0.18, G:0.25, T:0.23
Consensus pattern (52 bp):
TGATTCACGGCCAACGACATTAGGTTTAAAGATGAGAAGAATGCCAATGTGC
Found at i:3705848 original size:49 final size:49
Alignment explanation
Indices: 3705685--3706879 Score: 1133
Period size: 49 Copynumber: 24.8 Consensus size: 49
3705675 AAAAGGATGT
* * * * * * *
3705685 CAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--GAAG-GTGC
* * * ** *
3705737 CAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGATATT-GGACTTAAAGAT---GAAGGTGC
** *
3705790 CAATATGCTGATTCAAGGCCAGCGATATTATACTTAAAGATGAAGGTAC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
3705839 CAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAGATGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGGTGC
*
3705892 CAATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * *
3705941 CAATGTGCTGATTCAAGGCCACCGACATTGGACTTAAAAGATGACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGGTGC
*
3705994 CAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
3706043 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGGTGC
3706096 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * *
3706145 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATG---AAGGTGC
* *
3706198 CAATATGCTAATTCAAGGCCATCGATATTGGACTT-AA-A-G-A--TGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * **
3706241 CAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
3706290 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * ** * *
3706333 CAATGTGCTGATTCAAGGTCAGCGACATTGGTCTTAAAGACAAAAGCGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
3706382 CAATATGCTGATTCAAGGCCAGCAATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * **
3706425 CAATGTGCTGATTCAAGGTCAGCGACATTGGTCTTAAAGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
3706474 CAATATGTTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * **
3706517 CAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGACAAAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
*
3706566 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTAC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * * * ** **
3706609 CAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAAGGCAC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
3706658 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * ** *
3706701 CAATGTGCTGATTCAAGGCCAGCGAGATTGGTCTTAAAGACAAAGGCGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* *
3706750 CAATATACTGATTCAAGGCCAGCGATATTGGACTT----A--ACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
* * * ** **
3706793 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCAC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
3706842 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
3706880 AGAAGATGCC
Statistics
Matches: 956, Mismatches: 127, Indels: 123
0.79 0.11 0.10
Matches are distributed among these distances:
43 250 0.26
44 2 0.00
45 8 0.01
47 7 0.01
49 410 0.43
50 29 0.03
51 2 0.00
52 55 0.06
53 189 0.20
54 4 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
Found at i:3706320 original size:92 final size:92
Alignment explanation
Indices: 3705733--3706879 Score: 1520
Period size: 92 Copynumber: 12.0 Consensus size: 92
3705723 GATGAGAAGA
* * *
3705733 ATGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAGATGACGAAGGCGCCAATATGC
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTT-AA-A-GACAAAGGCGCCAATATGC
**
3705798 TGATTCAAGGCCAGCGATATTATACTTAAAG
62 TGATTCAAGGCCAGCGATATTGGACTTAAAG
* * * *
3705829 ATGAAGGTACCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAGATGACAAAGGTGCCA
1 AT----G--CCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT--AA-A-GACAAAGGCGCCA
*
3705894 ATATGCTGATTTAAGGCCAGCGATATTGGACTTAAAGATG
56 ATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
* *
3705934 AAGGTGCCAATGTGCTGATTCAAGGCCACCGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
1 -A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT--AA-A-GACAAAGGCGCCAATA
*
3705999 TGCTGATTCAAGGCCAACGATATTGGACTTAAAGATG
59 TGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
* *
3706036 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGTGCCAATA
1 -A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT--AA-A-GACAAAGGCGCCAATA
3706101 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
59 TGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G
*
3706138 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAAGATGACAAAGGCGCCAATA
1 -A--TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT--AA-A-GACAAAGGCGCCAATA
* *
3706203 TGCTAATTCAAGGCCATCGATATTGGACTTAAAG
59 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAG
* *
3706237 ATGCCAATGTGCTGATTCAAGGCCAGTGACATTGGTCTTAAAGACAAAGGTGCCAATATGCTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
3706302 TCAAGGCCAGCGATATTGGACTTAAAG
66 TCAAGGCCAGCGATATTGGACTTAAAG
* * *
3706329 GTGCCAATGTGCTGATTCAAGGTCAGCGACATTGGTCTTAAAGACAAAAGCGCCAATATGCTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
*
3706394 TCAAGGCCAGCAATATTGGACTTAAAG
66 TCAAGGCCAGCGATATTGGACTTAAAG
* * * *
3706421 GTGCCAATGTGCTGATTCAAGGTCAGCGACATTGGTCTTAAAGACAAAGGTGCCAATATGTTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
3706486 TCAAGGCCAGCGATATTGGACTTAAAG
66 TCAAGGCCAGCGATATTGGACTTAAAG
* * *
3706513 GTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGTCTTAAAGACAAAGGTGCCAATATGCTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
3706578 TCAAGGCCAGCGATATTGGACTTAAAG
66 TCAAGGCCAGCGATATTGGACTTAAAG
* * * * *
3706605 GTACCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGACAAAGGCACCAATATGCTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
3706670 TCAAGGCCAGCGATATTGGACTTAAAG
66 TCAAGGCCAGCGATATTGGACTTAAAG
* * *
3706697 GTGCCAATGTGCTGATTCAAGGCCAGCGAGATTGGTCTTAAAGACAAAGGCGCCAATATACTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
*
3706762 TCAAGGCCAGCGATATTGGACTTAACG
66 TCAAGGCCAGCGATATTGGACTTAAAG
* *
3706789 GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCACCAATATGCTGAT
1 ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
3706854 TCAAGGCCAGCGATATTGGACTTAAA
66 TCAAGGCCAGCGATATTGGACTTAAA
3706880 AGAAGATGCC
Statistics
Matches: 984, Mismatches: 54, Indels: 30
0.92 0.05 0.03
Matches are distributed among these distances:
92 568 0.58
93 1 0.00
94 2 0.00
96 38 0.04
98 1 0.00
99 1 0.00
100 2 0.00
101 6 0.01
102 358 0.36
103 2 0.00
104 2 0.00
105 1 0.00
106 1 0.00
108 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.24
Consensus pattern (92 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAAGGCGCCAATATGCTGAT
TCAAGGCCAGCGATATTGGACTTAAAG
Found at i:3707061 original size:71 final size:71
Alignment explanation
Indices: 3706978--3707264 Score: 396
Period size: 71 Copynumber: 4.0 Consensus size: 71
3706968 ACTTAAAAGG
* * * * *
3706978 GAAAAAGAGTGCCACGAAGTTGTGGGCTTTAAAAAGAAAAAGGTCCCACAGATTTATGGGCTTTG
1 GAAAAAG-GTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGATTTATGGGCTTTG
*
3707043 TAGAAAA
65 GAGAAAA
* *
3707050 GAAAAAGGTGCCACGGAGTGGTAGGCTTTGAAAAGAAAAAGGTGCCATGGATTTATGGGCTTTGG
1 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGATTTATGGGCTTTGG
3707115 AGAAAA
66 AGAAAA
* * *
3707121 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAATGTGTCACGGAGTTATGGGCTTTGG
1 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGATTTATGGGCTTTGG
3707186 AGAACAA
66 AGAA-AA
* * * * * *
3707193 -AAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAATGTGTCATGGAGTTGTGGGCTTTGA
1 GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGATTTATGGGCTTTGG
3707257 AGAAAA
66 AGAAAA
3707263 GA
1 GA
3707265 TGCCACTGAT
Statistics
Matches: 197, Mismatches: 16, Indels: 5
0.90 0.07 0.02
Matches are distributed among these distances:
70 2 0.01
71 186 0.94
72 9 0.05
ACGTcount: A:0.36, C:0.10, G:0.32, T:0.22
Consensus pattern (71 bp):
GAAAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAAAAGGTGCCACGGATTTATGGGCTTTGG
AGAAAA
Found at i:3707244 original size:105 final size:103
Alignment explanation
Indices: 3706979--3707257 Score: 258
Period size: 105 Copynumber: 2.6 Consensus size: 103
3706969 CTTAAAAGGG
* * * * * **
3706979 AAAAAGAGTGCCACGAAGTTG-TGGGCTTT-AAAAAGAAAAAGGTCCCACAGATTTATGGGCTTT
1 AAAAAG-GTGCCACGGAG-TGATGGGCTTTGGAAAAGAAAAAGGTGCCACGGAGTGGTGGGC-TT
* *
3707042 GTAGAAAAGAAAAAGGTGCCACGGAGTGGTAGGCTTTGAAAAG
63 -T-GAAAAGAAAAAGGTGCCACGGAGTGATAGGCTTTGAAAAA
* * *
3707085 AAAAAGGTGCCATGGATTTATGGGCTTTGGAGAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTT
1 AAAAAGGTGCCACGGAGTGATGGGCTTT-G-GAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTT
* * * *
3707150 GAAAAGAAAAATGTGTCACGGAGTTATGGGCTTTGGAGAACAA
64 GAAAAGAAAAAGGTGCCACGGAGTGATAGGCTTT-GA-AA-AA
* * * * *
3707193 AAAAAGGTGCCACGGAGTGGTGGGCTTT-GAAAAGAAAAATGTGTCATGGAGTTGTGGGCTTTGA
1 AAAAAGGTGCCACGGAGTGATGGGCTTTGGAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGA
3707257 A
66 A
3707258 GAAAAGATGC
Statistics
Matches: 142, Mismatches: 24, Indels: 15
0.78 0.13 0.08
Matches are distributed among these distances:
104 1 0.01
105 78 0.55
106 9 0.06
107 4 0.03
108 50 0.35
ACGTcount: A:0.35, C:0.11, G:0.32, T:0.22
Consensus pattern (103 bp):
AAAAAGGTGCCACGGAGTGATGGGCTTTGGAAAAGAAAAAGGTGCCACGGAGTGGTGGGCTTTGA
AAAGAAAAAGGTGCCACGGAGTGATAGGCTTTGAAAAA
Found at i:3707255 original size:34 final size:34
Alignment explanation
Indices: 3706926--3707257 Score: 310
Period size: 34 Copynumber: 9.4 Consensus size: 34
3706916 TGCCACTAAC
* *
3706926 TTGTGGGCTTTTGAAAAGAAGAAAGATGCCACGAAG
1 TTGTGGGC-TTTGAAAAGAA-AAAGGTGCCACGGAG
*
3706962 TTG-GGGAC-TT-AAAAGGGAAAAAGAGTGCCACGAAG
1 TTGTGGG-CTTTGAAAA--GAAAAAG-GTGCCACGGAG
* * * *
3706997 TTGTGGGCTTTAAAAAGAAAAAGGTCCCACAGAT
1 TTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAG
*
3707031 TTATGGGCTTTGTAGAAAAGAAAAAGGTGCCACGGAG
1 TTGTGGGC-TT-T-GAAAAGAAAAAGGTGCCACGGAG
* * * *
3707068 TGGTAGGCTTTGAAAAGAAAAAGGTGCCATGGAT
1 TTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAG
*
3707102 TTATGGGCTTTGGAGAAAAGAAAAAGGTGCCACGGAG
1 TTGTGGGCTTT---GAAAAGAAAAAGGTGCCACGGAG
* * *
3707139 TGGTGGGCTTTGAAAAGAAAAATGTGTCACGGAG
1 TTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAG
* *
3707173 TTATGGGCTTTGGAGAACAAAAAAAGGTGCCACGGAG
1 TTGTGGGCTTT-GA-AA-AGAAAAAGGTGCCACGGAG
* * * *
3707210 TGGTGGGCTTTGAAAAGAAAAATGTGTCATGGAG
1 TTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAG
3707244 TTGTGGGCTTTGAA
1 TTGTGGGCTTTGAA
3707258 GAAAAGATGC
Statistics
Matches: 244, Mismatches: 36, Indels: 34
0.78 0.11 0.11
Matches are distributed among these distances:
33 4 0.02
34 107 0.44
35 34 0.14
36 16 0.07
37 83 0.34
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.22
Consensus pattern (34 bp):
TTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAG
Found at i:3707321 original size:61 final size:62
Alignment explanation
Indices: 3707241--3707443 Score: 281
Period size: 61 Copynumber: 3.3 Consensus size: 62
3707231 ATGTGTCATG
* * *
3707241 GAGTTGTGGGCTTTGAAGAAAAGATGCCACTGATTCGTGGACTTTGGA-AAAAGATGCCACT
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGAGAAAAGATGCCACT
*
3707302 GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGAGAAAAGATGCCACT
* * * *
3707364 AAGTCGTGGACTTTG-GGACAAA-ATGCCACTGAGTCGTGGGCTTT-GAGAAGAGATTGCCACT
1 GAGTCGTGGACTTTGAAGA-AAAGATGCCACTGAGTCGTGGACTTTGGAGAAAAGA-TGCCACT
3707425 GAGTCGTGGACTTT-AAGAA
1 GAGTCGTGGACTTTGAAGAA
3707444 GGTATTTGAA
Statistics
Matches: 127, Mismatches: 11, Indels: 9
0.86 0.07 0.06
Matches are distributed among these distances:
60 8 0.06
61 89 0.70
62 30 0.24
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (62 bp):
GAGTCGTGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGAGAAAAGATGCCACT
Found at i:3707361 original size:92 final size:92
Alignment explanation
Indices: 3707241--3707443 Score: 304
Period size: 92 Copynumber: 2.2 Consensus size: 92
3707231 ATGTGTCATG
* * * *
3707241 GAGTTGTGGGCTTTGAAGAAAAGATGCCACTGATTCGTGGACTTT-GGAAAAAGATGCCACTGAG
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGAAAAA-ATGCCACTGAG
3707305 TCGTGGACTTTGAAGAAAAGA-TGCCACT
65 TCGTGGACTTTG-AGAAAAGATTGCCACT
*
3707333 GAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGACAAAATGCCACTGAGT
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGAAAAAATGCCACTGAGT
* *
3707398 CGTGGGCTTTGAGAAGAGATTGCCACT
66 CGTGGACTTTGAGAAAAGATTGCCACT
3707425 GAGTCGTGGACTTT-AAGAA
1 GAGTCGTGGACTTTGAAGAA
3707444 GGTATTTGAA
Statistics
Matches: 102, Mismatches: 7, Indels: 5
0.89 0.06 0.04
Matches are distributed among these distances:
91 12 0.12
92 84 0.82
93 6 0.06
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (92 bp):
GAGTCGTGGACTTTGAAGAAAAGATGCCACTAAGTCGTGGACTTTGGGAAAAAATGCCACTGAGT
CGTGGACTTTGAGAAAAGATTGCCACT
Found at i:3707444 original size:31 final size:31
Alignment explanation
Indices: 3707241--3707443 Score: 281
Period size: 31 Copynumber: 6.6 Consensus size: 31
3707231 ATGTGTCATG
* *
3707241 GAGTTGTGGGCTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
* *
3707272 GATTCGTGGACTTTGGA-AAAAGATGCCACT
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
3707302 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
3707333 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
1 GAGTCGTGGACTTTGAAGAAAAGATGCCACT
* *
3707364 AAGTCGTGGACTTTG-GGACAAA-ATGCCACT
1 GAGTCGTGGACTTTGAAGA-AAAGATGCCACT
* *
3707394 GAGTCGTGGGCTTTG-AGAAGAGATTGCCACT
1 GAGTCGTGGACTTTGAAGAAAAGA-TGCCACT
3707425 GAGTCGTGGACTTT-AAGAA
1 GAGTCGTGGACTTTGAAGAA
3707444 GGTATTTGAA
Statistics
Matches: 154, Mismatches: 13, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
29 2 0.01
30 54 0.35
31 98 0.64
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.25
Consensus pattern (31 bp):
GAGTCGTGGACTTTGAAGAAAAGATGCCACT
Found at i:3707566 original size:8 final size:8
Alignment explanation
Indices: 3707543--3707572 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
3707533 GATTCAAATA
3707543 ATGATGTT
1 ATGATGTT
3707551 ATTGATGTT
1 A-TGATGTT
3707560 ATGATGTT
1 ATGATGTT
3707568 ATGAT
1 ATGAT
3707573 TACAGCACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (8 bp):
ATGATGTT
Found at i:3708483 original size:19 final size:20
Alignment explanation
Indices: 3708449--3708489 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
3708439 CTCACCGAGA
* *
3708449 TTTTCTGTTTTGTTTTTTGT
1 TTTTCTCTTTTGTTTTGTGT
3708469 TTTTCTCTTTT-TTTTGTGT
1 TTTTCTCTTTTGTTTTGTGT
3708488 TT
1 TT
3708490 GGAAAAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.00, C:0.07, G:0.12, T:0.80
Consensus pattern (20 bp):
TTTTCTCTTTTGTTTTGTGT
Found at i:3708755 original size:11 final size:11
Alignment explanation
Indices: 3708730--3708774 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
3708720 CTTTACACTC
3708730 TTTTTTTGGTGTG
1 TTTTTTT-GT-TG
3708743 TTTTTTTGTTG
1 TTTTTTTGTTG
*
3708754 TTTTTTTGTTT
1 TTTTTTTGTTG
3708765 TTTTTTTGTT
1 TTTTTTTGTT
3708775 TACTTTTGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
11 22 0.71
12 2 0.06
13 7 0.23
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (11 bp):
TTTTTTTGTTG
Done.