Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold16
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5287347
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 8769 characters in sequence are not A, C, G, or T
File 5 of 35
Found at i:710980 original size:165 final size:167
Alignment explanation
Indices: 710789--711152 Score: 479
Period size: 165 Copynumber: 2.2 Consensus size: 167
710779 ATGGGTGTTT
* * ** *
710789 AATAACAATATTAGATAAATTTTAAAAATTTTAAACCAAGAAAAATCCCCCCCAAAACATTTATG
1 AATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCCAAAACATTTA-C
* * ** **
710854 GAA-TAGAAAAC-TCGGTTTTTTGGAAATAGGAAAATTTCAA-AGAAAAAAT-AAAAACTCTTGA
65 GAAGTAAAAAACTTC-GTATTTAAGAAATAGGAAAATTTCAAGA-AAAAAATGAAAAACTCAAGA
710915 AAATGAATGA-TTTTTTGAAAAATGATTTAATATGT-ATTA
128 AAATGAATGATTTTTTTGAAAAATGATTTAATAT-TAATTA
* ** *
710954 AATAATAATATTTGATAAATTTTAAAAATTAAAAACCGAGAAAAATCCCCCTGAAAATATTTACG
1 AATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCCAAAACATTTACG
* *
711019 AAGTAAAAAACTTCGTATTTAAGAAATAGGAGAATTTCAGGAAAAAAATGAAAAACTCAAGAAAA
66 AAGTAAAAAACTTCGTATTTAAGAAATAGGAAAATTTCAAGAAAAAAATGAAAAACTCAAGAAAA
*
711084 TGAATGATTTTTTTGAAAACTGATTTAATATTAATTA
131 TGAATGATTTTTTTGAAAAATGATTTAATATTAATTA
*
711121 AATAATAATATTTGATGAATTTTAAAAATTAA
1 AATAATAATATTTGATAAATTTTAAAAATTAA
711153 TATTTAATGA
Statistics
Matches: 174, Mismatches: 19, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
164 3 0.02
165 90 0.52
166 24 0.14
167 57 0.33
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (167 bp):
AATAATAATATTTGATAAATTTTAAAAATTAAAAACCAAGAAAAATCCCCCCCAAAACATTTACG
AAGTAAAAAACTTCGTATTTAAGAAATAGGAAAATTTCAAGAAAAAAATGAAAAACTCAAGAAAA
TGAATGATTTTTTTGAAAAATGATTTAATATTAATTA
Found at i:711145 original size:24 final size:24
Alignment explanation
Indices: 711118--711176 Score: 93
Period size: 24 Copynumber: 2.5 Consensus size: 24
711108 TTAATATTAA
*
711118 TTAAATAA-TAATATTTGATGAATT
1 TTAAA-AATTAATATTTAATGAATT
711142 TTAAAAATTAATATTTAATGAATT
1 TTAAAAATTAATATTTAATGAATT
711166 TTAAAAATTAA
1 TTAAAAATTAA
711177 AATCAAGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
23 2 0.06
24 31 0.94
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (24 bp):
TTAAAAATTAATATTTAATGAATT
Found at i:719473 original size:13 final size:13
Alignment explanation
Indices: 719455--719479 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
719445 CAAAGATCAG
719455 TGTATCGATACAA
1 TGTATCGATACAA
719468 TGTATCGATACA
1 TGTATCGATACA
719480 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:719563 original size:13 final size:13
Alignment explanation
Indices: 719545--719569 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
719535 CAAAAAAATA
719545 TGTATCGATACAT
1 TGTATCGATACAT
719558 TGTATCGATACA
1 TGTATCGATACA
719570 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:719565 original size:33 final size:33
Alignment explanation
Indices: 719523--719589 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
719513 AGTAGCTTAA
719523 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
719556 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
719589 A
1 A
719590 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:720604 original size:49 final size:49
Alignment explanation
Indices: 720458--720615 Score: 147
Period size: 49 Copynumber: 3.1 Consensus size: 49
720448 AAAAGTGATA
* * * * *
720458 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G
* ** * * *
720509 AAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
720562 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
720610 ATGATG
1 AAGATG
720616 AGAAAAGTGA
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
48 8 0.09
49 37 0.44
50 2 0.02
53 1 0.01
54 2 0.02
55 35 0.41
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:720675 original size:170 final size:171
Alignment explanation
Indices: 720387--720780 Score: 691
Period size: 170 Copynumber: 2.3 Consensus size: 171
720377 TTTTAGAGAT
*
720387 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
720452 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
720517 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
720558 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATGATGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
* *
720622 GTGATAAAGATGCCAATATGTTGCTTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
720687 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
720728 GATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GAT-GAAGA--TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
720781 GTGCCAATGT
Statistics
Matches: 212, Mismatches: 7, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
170 121 0.57
171 51 0.24
173 40 0.19
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (171 bp):
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
Found at i:720799 original size:43 final size:45
Alignment explanation
Indices: 720738--720871 Score: 191
Period size: 43 Copynumber: 2.9 Consensus size: 45
720728 GATGGAAAAT
720738 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-G-
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGA
* *
720781 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-ATG-A
*
720829 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
720872 ATGATGATGA
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
43 37 0.46
44 2 0.03
45 1 0.01
46 1 0.01
47 1 0.01
48 3 0.04
49 35 0.44
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (45 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGA
Found at i:720837 original size:49 final size:48
Alignment explanation
Indices: 720695--720880 Score: 229
Period size: 49 Copynumber: 3.9 Consensus size: 48
720685 GATGTCAACG
* *
720695 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAA-AT-GAAGA--TGCCAATA
* *
720747 TGCTGATTCAAGGCCAGCTATATTGGACTT-AAA-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAATGAAGATGCCAATA
720790 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAA-ATGAAGATGCCAATA
* * *
720839 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGATGATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAATGAAGATG
720881 AGAAAAGTGA
Statistics
Matches: 119, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
43 36 0.30
44 2 0.02
45 1 0.01
46 1 0.01
48 10 0.08
49 38 0.32
50 1 0.01
51 2 0.02
52 28 0.24
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (48 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAATGAAGATGCCAATA
Found at i:720868 original size:92 final size:94
Alignment explanation
Indices: 720694--720871 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 94
720684 GGATGTCAAC
720694 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAA-GTGCCAATATGCTGATTCAAG
*
720759 GCCAGCTATATTGGACTTAAAGGTGCCAAT
65 GCCAGCGATATTGGACTTAAAGGTGCCAAT
* *
720789 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGA-TGCCAATATGCTGATTCAAGG
1 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGG
720852 CCAGCGATATTGGACTTAAA
66 CCAGCGATATTGGACTTAAA
720872 ATGATGATGA
Statistics
Matches: 80, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
92 40 0.50
94 4 0.05
95 36 0.45
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (94 bp):
GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGG
CCAGCGATATTGGACTTAAAGGTGCCAAT
Found at i:720997 original size:265 final size:265
Alignment explanation
Indices: 720524--721136 Score: 1217
Period size: 265 Copynumber: 2.3 Consensus size: 265
720514 GGATGTCAAC
*
720524 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
720589 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
66 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
720654 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
131 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
720719 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
196 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
720784 CCAAT
261 CCAAT
720789 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
720854 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
66 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
720919 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
131 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
720984 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
196 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
721049 CCAAT
261 CCAAT
721054 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
721119 AGCGATATTGGACTTAAA
66 AGCGATATTGGACTTAAA
721137 GGTGCCAATG
Statistics
Matches: 347, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
265 347 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (265 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
CCAAT
Found at i:721102 original size:49 final size:49
Alignment explanation
Indices: 720960--721615 Score: 855
Period size: 49 Copynumber: 13.6 Consensus size: 49
720950 GATGTCAACG
* *
720960 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGA--TGCCAATA
* *
721012 TGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
721055 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * *
721104 TGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
721147 TGCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * *
721196 TGCTGATTCAAGGCCAG-TGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATGAAGATGCCAATA
*
721245 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * * *
721294 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
721343 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATA
* * *
721395 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
*
721444 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * *
721493 TGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
*
721536 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
721585 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
721616 GAGGGGTTGC
Statistics
Matches: 532, Mismatches: 49, Indels: 49
0.84 0.08 0.08
Matches are distributed among these distances:
43 104 0.20
44 8 0.02
45 3 0.01
46 5 0.01
47 2 0.00
48 9 0.02
49 322 0.61
50 3 0.01
51 3 0.01
52 73 0.14
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
Found at i:721133 original size:92 final size:93
Alignment explanation
Indices: 720959--721617 Score: 1009
Period size: 92 Copynumber: 6.9 Consensus size: 93
720949 GGATGTCAAC
* * *
720959 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGA--TGCCAATATGCTGATTCAAG
*
721024 GCCAGCTATATTGGACTTA-AAGGTGCCAAT
63 GCCAGCGATATTGGACTTAGAAGGTGCCAAT
*
721054 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
721119 AGCGATATTGGACTTA-AAGGTGCCAAT
66 AGCGATATTGGACTTAGAAGGTGCCAAT
*
721146 GTGCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
*
721211 AGTGATATTGGACTTAAAGATGAAGGTGCCAAT
66 AGCGATATTGGACTT----A-GAAGGTGCCAAT
721244 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
721309 AGCGATATTGGACTTAAAGATGAAGGTGCCAAT
66 AGCGATATTGGACTT----A-GAAGGTGCCAAT
*
721342 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAG
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAG
*
721407 GCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
63 GCCAGCGATATTGGACTT----A-GAAGGTGCCAAT
721443 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
721508 AGCGATATTGGACTTA-AAGGTGCCAAT
66 AGCGATATTGGACTTAGAAGGTGCCAAT
721535 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
* *
721600 AGCTATATTGGGCTTAGA
66 AGCGATATTGGACTTAGA
721618 GGGGTTGCCA
Statistics
Matches: 540, Mismatches: 14, Indels: 22
0.94 0.02 0.04
Matches are distributed among these distances:
92 216 0.40
93 1 0.00
94 5 0.01
95 36 0.07
96 1 0.00
98 184 0.34
99 1 0.00
100 1 0.00
101 95 0.18
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (93 bp):
GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
AGCGATATTGGACTTAGAAGGTGCCAAT
Found at i:721610 original size:389 final size:386
Alignment explanation
Indices: 720893--721615 Score: 1211
Period size: 389 Copynumber: 1.9 Consensus size: 386
720883 AAAAGTGATA
* * * * *
720893 AAGATGCCAATATGTTGCTTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAA
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT-AG--AAAGGATGCCAA
* *
720958 CGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAA
63 CGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAA
*
721023 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
128 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
721088 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGA
193 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGA
*
721153 GTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGTGATA
258 GTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGTGATA
721218 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
323 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
721282 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G-AAGG-TGCCAATGT
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAGAAAGGATGCCAACGT
*
721344 GCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGC
66 GCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGC
721409 CAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
131 CAGCTATATTGGACTT----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
721474 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
190 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
721539 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCT
255 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAG-T
*
721604 -ATATTGGGCTTA
319 GATATTGGACTTA
721616 GAGGGGTTGC
Statistics
Matches: 314, Mismatches: 13, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
383 85 0.27
384 4 0.01
387 2 0.01
389 222 0.71
390 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (386 bp):
AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAGAAAGGATGCCAACGT
GCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGC
CAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
AAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGTGATATTG
GACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:721749 original size:32 final size:33
Alignment explanation
Indices: 721620--721745 Score: 220
Period size: 33 Copynumber: 3.8 Consensus size: 33
721610 GGCTTAGAGG
*
721620 GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
721653 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
721686 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A
1 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
721719 -GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCGACTTGTGTGGGCTTTGG
721746 GAAGGAAAAA
Statistics
Matches: 91, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
31 2 0.02
32 25 0.27
33 59 0.65
34 5 0.05
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
Found at i:721749 original size:66 final size:66
Alignment explanation
Indices: 721620--721745 Score: 220
Period size: 65 Copynumber: 1.9 Consensus size: 66
721610 GGCTTAGAGG
721620 GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAGA
1 GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAGA
721685 A
66 A
*
721686 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A-GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCAACTTGTGTGGGCTTT-GGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGG
721746 GAAGGAAAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
65 27 0.47
66 26 0.45
67 5 0.09
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (66 bp):
GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAGA
A
Found at i:721834 original size:33 final size:33
Alignment explanation
Indices: 721750--722427 Score: 473
Period size: 34 Copynumber: 19.0 Consensus size: 33
721740 CTTTGGGAAG
*
721750 GAAAAAAGATGCCACGGAGTTGTGGAC-TTAAAA
1 GAAAAAAG-TGCCACGGAGTTGTGGGCTTTAAAA
721783 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTAAAA
721819 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
721853 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTAAAA
721889 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
721923 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTAAA-A
*
721960 GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
* ** * ****
721994 GGGAAAGAGAGTGCCACAAAGTCGTAGGTGCCACAGAGTTGTGGGC
1 --GAAA-AAAGTGCCACGGAGTTGT-GG-G---C----TT-TAAAA
*** *** * * **** ****
722040 TTTAAAAG-AAAAAGGTGCCACGGAG-TTGTGGGCT
1 GAAAAAAGTGCCACGGAGTTGTGG-GCTT-T-AAAA
*** ** *
722074 TTGAAAAGGAAAAAAGAGTGCCACAAAGTTGTGGAC-TTAAAA
1 GAAAAAA----------GTGCCACGGAGTTGTGGGCTTTAAAA
722116 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTAAAA
722152 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
722186 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTAAAA
722222 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
722256 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAACA
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTAAA-A
*
722293 GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
* *
722327 AAAGAAAGAGTGCCACGAAGTTGTGGGCTTTAAAA
1 GAA-AAA-AGTGCCACGGAGTTGTGGGCTTTAAAA
* *
722362 GAAGAAGGTGCCACGGAGTTGTGGGCTTTAAAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT-AAAA
* *
722396 GAAGAAGGTGCCACGGAGTTGTGGGCTTTAAA
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTTAAA
722428 GAGTGCCACG
Statistics
Matches: 529, Mismatches: 59, Indels: 112
0.76 0.08 0.16
Matches are distributed among these distances:
33 120 0.23
34 131 0.25
35 66 0.12
36 77 0.15
37 107 0.20
38 2 0.00
39 1 0.00
41 3 0.01
42 4 0.01
43 4 0.01
44 6 0.01
45 5 0.01
46 2 0.00
47 1 0.00
ACGTcount: A:0.35, C:0.12, G:0.33, T:0.20
Consensus pattern (33 bp):
GAAAAAAGTGCCACGGAGTTGTGGGCTTTAAAA
Found at i:721923 original size:104 final size:107
Alignment explanation
Indices: 721734--722427 Score: 641
Period size: 103 Copynumber: 6.5 Consensus size: 107
721724 CACCGACTTG
** * *
721734 TGTGGGCTTTGGGAAGGAAAAAAGA-TGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GGAAAAAGAGTGC
721797 CACGGAGTTGTGGGCTTTAAAA-GAAAAA-AGTGCCACGGAGT
65 CACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
721838 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAAAAA-AGTGCC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCC
721901 ACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
66 ACGGAGTTGTGGGCTTT-AAAA-GGAAAAAGAGTGCCACGGAGT
*
721945 TGTGGGCTTT-AAACA--GAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGT
1 TGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAAAAAGAGT
** * *** ** * *** * *
722006 GCCACAAAGTCGTAGGTGCCACAGAGTTGTGGGCTTTAAAAGA--AAAAGGTGCCACGG
63 GCCACGGAGTTGT-GG-GCTTTA-A----AAGG---AAAAAGAGTGCCACG-G--A-GT
* ** ** * ** *
722063 AGTTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGTTGTGGAC-TTAAAAGGGAAAAAGAG
1 TG-TG-GGCTTTGAAAAGGGAA-AAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GGAAAAAGAG
722127 TGCCACGGAGTTGTGGGCTTTAAAA-GAAAAA-AGTGCCACGGAGT
62 TGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
722171 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAAAAA-AGTGCC
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCC
722234 ACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
66 ACGGAGTTGTGGGCTTT-AAAA-GGAAAAAGAGTGCCACGGAGT
*
722278 TGTGGGCTTT-AAACA--GAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA-AAAGAAAGAGT
1 TGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGGAA-AAAGAGT
* *
722338 GCCACGAAGTTGTGGGCTTTAAAA-GAAGAAG-GTGCCACGGAGT
63 GCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
* *
722381 TGTGGGCTTT-AAAA-AGAAGAAG-GTGCCACGGAGTTGTGGGCTTTAAA
1 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
722428 GAGTGCCACG
Statistics
Matches: 492, Mismatches: 54, Indels: 90
0.77 0.08 0.14
Matches are distributed among these distances:
102 4 0.01
103 99 0.20
104 92 0.19
105 62 0.13
106 48 0.10
107 77 0.16
108 15 0.03
109 4 0.01
110 4 0.01
111 5 0.01
112 2 0.00
113 2 0.00
114 3 0.01
115 1 0.00
116 6 0.01
117 1 0.00
118 2 0.00
119 3 0.01
120 8 0.02
121 4 0.01
122 28 0.06
123 6 0.01
124 16 0.03
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (107 bp):
TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCC
ACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACGGAGT
Found at i:722005 original size:71 final size:70
Alignment explanation
Indices: 721750--722424 Score: 537
Period size: 70 Copynumber: 9.4 Consensus size: 70
721740 CTTTGGGAAG
*
721750 GAAAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAG-TGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
721813 TTAAAA
65 TTAAAA
721819 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
721884 TAAAA
66 TAAAA
721889 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
721954 TAAACA
66 TAAA-A
* * * ** *
721960 GAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGTCGTAGGTGC
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGT-GG-G-
****
722025 CACAGAGTTGTGGGC
63 --C----TT-TAAAA
*** *** * * **** **** ** **
722040 TTTAAAAG-AAAAAGGTGCCACGGAG-TTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGT
1 GAAAAAAGTGCCACGGAGTTGTGG-GCTT-T--GAAAAGGGAA-----AAAGAGTGCCACGGAGT
*
722103 TGTGGAC-TTAAAA
57 TGTGGGCTTTAAAA
722116 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--GAAAAA-AGTGCCACGGAGTTGTGGG
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGG
722177 CTTTGAAAA
63 CTTT-AAAA
722186 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--GAAAAA-AGTGCCACGGAGTTGTGGG
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGG
722247 CTTTGAAAA
63 CTTT-AAAA
722256 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAACA--GAAAAAG-GTGCCACGGAGTTGTGG
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGG
722317 GCTTTGAAAA
62 GCTTT-AAAA
* * *
722327 AAAGAAAGAGTGCCACGAAGTTGTGGGCTTT-AAAA--GAAGAAG-GTGCCACGGAGTTGTGGGC
1 GAA-AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGC
722388 TTTAAAAA
64 TTT-AAAA
* *
722396 GAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT
722425 AAAGAGTGCC
Statistics
Matches: 508, Mismatches: 66, Indels: 66
0.79 0.10 0.10
Matches are distributed among these distances:
67 21 0.04
68 36 0.07
69 52 0.10
70 247 0.49
71 88 0.17
72 2 0.00
73 1 0.00
74 2 0.00
76 2 0.00
77 1 0.00
78 3 0.01
79 12 0.02
80 16 0.03
81 1 0.00
82 4 0.01
86 2 0.00
87 18 0.04
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (70 bp):
GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
TAAAA
Found at i:722081 original size:87 final size:88
Alignment explanation
Indices: 721933--722102 Score: 297
Period size: 87 Copynumber: 1.9 Consensus size: 88
721923 GGGAAAAAGA
* *
721933 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGGA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
*
721998 AAGAGAGTGCCACAAAGTCGTAG
66 AAAAGAGTGCCACAAAGTCGTAG
*
722021 GTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGAA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
722085 AAAAGAGTGCCACAAAGT
66 AAAAGAGTGCCACAAAGT
722103 TGTGGACTTA
Statistics
Matches: 78, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 54 0.69
88 24 0.31
ACGTcount: A:0.34, C:0.14, G:0.33, T:0.19
Consensus pattern (88 bp):
GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAAGGAA
AAAAGAGTGCCACAAAGTCGTAG
Found at i:722441 original size:27 final size:27
Alignment explanation
Indices: 722403--722575 Score: 112
Period size: 31 Copynumber: 5.8 Consensus size: 27
722393 AAAGAAGAAG
* *
722403 GTGCCACGGAGTTGTGGGCTTTAAAGA
1 GTGCCACGGAGTCGTGGACTTTAAAGA
*
722430 GTGCCACGGAGTCGTGGACTTTGAGACAAA
1 GTGCCACGGAGTCGTGGACTTT-A-A-AGA
* *
722460 ATGCCACTGAGTCGTGGACTTTAAAGAGAA
1 GTGCCACGGAGTCGTGGACTTT-AA-AG-A
* *
722490 GGATGCCACTGCGTCGTGGACTTTGAGCAGAGA
1 -G-TGCCACGGAGTCGTGGACTTT-A--A-AGA
* *
722523 TTGCCACTGAGTCGTGGACTTTGAGAAGA
1 GTGCCACGGAGTCGTGGACTTT-A-AAGA
*
722552 GATTGCCACTGAGTCGTGGACTTT
1 G--TGCCACGGAGTCGTGGACTTT
722576 TTTTTGACTT
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
27 20 0.17
28 1 0.01
29 6 0.05
30 25 0.21
31 43 0.36
32 21 0.17
33 1 0.01
34 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (27 bp):
GTGCCACGGAGTCGTGGACTTTAAAGA
Found at i:722531 original size:31 final size:31
Alignment explanation
Indices: 722431--722575 Score: 181
Period size: 31 Copynumber: 4.7 Consensus size: 31
722421 CTTTAAAGAG
* *
722431 TGCCACGGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAG-CAGAGAT
*
722461 TGCCACTGAGTCGTGGACTTTAAAG-AGAAGGA-
1 TGCCACTGAGTCGTGGACTTT-GAGCAG-A-GAT
*
722493 TGCCACTGCGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
*
722524 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
722555 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
722576 TTTTTGACTT
Statistics
Matches: 102, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
29 1 0.01
30 22 0.22
31 56 0.55
32 22 0.22
33 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
Found at i:722594 original size:4 final size:4
Alignment explanation
Indices: 722587--722618 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
722577 TTTTGACTTT
*
722587 TTTA TTTA TTTA TTTA TTTA TTTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
722619 AAAGGTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:723915 original size:1 final size:1
Alignment explanation
Indices: 723909--723999 Score: 56
Period size: 1 Copynumber: 91.0 Consensus size: 1
723899 ACCTTTGCAC
* * * * * * * * * * *
723909 TTTTTTTTGTGTTTTTTTTTTTTTTGTTTTTTGTGTTTTTGTGTTTTTTGTTTTTTTTGTGTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
723974 TTTTTTGTTTGTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
724000 CATCACTTCT
Statistics
Matches: 62, Mismatches: 28, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 62 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (1 bp):
T
Found at i:723925 original size:9 final size:9
Alignment explanation
Indices: 723911--723995 Score: 90
Period size: 9 Copynumber: 9.7 Consensus size: 9
723901 CTTTGCACTT
723911 TTTTTTGTG
1 TTTTTTGTG
723920 TTTTTT-T-
1 TTTTTTGTG
723927 TTTTTT-TG
1 TTTTTTGTG
723935 TTTTTTGTG
1 TTTTTTGTG
723944 -TTTTTGTG
1 TTTTTTGTG
*
723952 TTTTTTGTTT
1 TTTTTTG-TG
723962 TTTTTGTGTG
1 TTTTT-TGTG
*
723972 TTTTTTTTG
1 TTTTTTGTG
723981 TTTGTTTGT-
1 TTT-TTTGTG
723990 TTTTTT
1 TTTTTT
723996 TTTTCATCAC
Statistics
Matches: 66, Mismatches: 4, Indels: 13
0.80 0.05 0.16
Matches are distributed among these distances:
7 7 0.11
8 18 0.27
9 23 0.35
10 16 0.24
11 2 0.03
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (9 bp):
TTTTTTGTG
Found at i:723929 original size:17 final size:17
Alignment explanation
Indices: 723909--723999 Score: 107
Period size: 18 Copynumber: 5.3 Consensus size: 17
723899 ACCTTTGCAC
723909 TTTTTTTTGTG-TTTTT
1 TTTTTTTTGTGTTTTTT
723925 TTTTTTTT-TGTTTTTT
1 TTTTTTTTGTGTTTTTT
* *
723941 GTGTTTTTGTGTTTTTT
1 TTTTTTTTGTGTTTTTT
723958 GTTTTTTTTGTGTGTTTTT
1 -TTTTTTTTGTGT-TTTTT
723977 TTTGTTTGTT-TGTTTTTT
1 TTT-TTT-TTGTGTTTTTT
723995 TTTTT
1 TTTTT
724000 CATCACTTCT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
15 2 0.03
16 19 0.29
17 10 0.15
18 21 0.32
19 11 0.17
20 2 0.03
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (17 bp):
TTTTTTTTGTGTTTTTT
Found at i:730979 original size:13 final size:13
Alignment explanation
Indices: 730961--730985 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
730951 CAAAGATCAG
730961 TGTATCGATACAA
1 TGTATCGATACAA
730974 TGTATCGATACA
1 TGTATCGATACA
730986 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:731070 original size:13 final size:13
Alignment explanation
Indices: 731052--731076 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
731042 CAAAAAAATA
731052 TGTATCGATACAT
1 TGTATCGATACAT
731065 TGTATCGATACA
1 TGTATCGATACA
731077 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:731072 original size:33 final size:33
Alignment explanation
Indices: 731030--731096 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
731020 AGTAGCTTAA
731030 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
731063 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
731096 A
1 A
731097 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:732111 original size:49 final size:49
Alignment explanation
Indices: 731965--732122 Score: 147
Period size: 49 Copynumber: 3.1 Consensus size: 49
731955 AAAAGTGATA
* * * * *
731965 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G
* ** * * *
732016 AAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG
1 ---AA-GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
732069 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATG
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
*
732117 ATGATG
1 AAGATG
732123 AGAAAAGTGA
Statistics
Matches: 85, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
48 8 0.09
49 37 0.44
50 2 0.02
53 1 0.01
54 2 0.02
55 35 0.41
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (49 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
Found at i:732182 original size:170 final size:171
Alignment explanation
Indices: 731894--732287 Score: 691
Period size: 170 Copynumber: 2.3 Consensus size: 171
731884 TTTTAGAGAT
*
731894 GATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
731959 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
732024 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
732065 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA-ATGATGATGAGAAAA
1 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
* *
732129 GTGATAAAGATGCCAATATGTTGCTTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
66 GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
732194 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
131 TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
* *
732235 GATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 GAT-GAAGA--TGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAG
732288 GTGCCAATGT
Statistics
Matches: 212, Mismatches: 7, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
170 121 0.57
171 51 0.24
173 40 0.19
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (171 bp):
GATGAAGATGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATGAGAAAA
GTGATAAAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCCTAAAGATGAGAAAAAGGA
TGTCAACGTGCTGATTCAAGGCCAGCTACATTGAACTTAAA
Found at i:732306 original size:43 final size:45
Alignment explanation
Indices: 732245--732378 Score: 191
Period size: 43 Copynumber: 2.9 Consensus size: 45
732235 GATGGAAAAT
732245 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA-G-
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGA
* *
732288 GTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-ATG-A
*
732336 GATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAA
1 G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAA
732379 ATGATGATGA
Statistics
Matches: 80, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
43 37 0.46
44 2 0.03
45 1 0.01
46 1 0.01
47 1 0.01
48 3 0.04
49 35 0.44
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (45 bp):
GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAATGA
Found at i:732344 original size:49 final size:48
Alignment explanation
Indices: 732202--732387 Score: 229
Period size: 49 Copynumber: 3.9 Consensus size: 48
732192 GATGTCAACG
* *
732202 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAA-AT-GAAGA--TGCCAATA
* *
732254 TGCTGATTCAAGGCCAGCTATATTGGACTT-AAA-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAATGAAGATGCCAATA
732297 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAA-ATGAAGATGCCAATA
* * *
732346 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAATGATGATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAATGAAGATG
732388 AGAAAAGTGA
Statistics
Matches: 119, Mismatches: 9, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
43 36 0.30
44 2 0.02
45 1 0.01
46 1 0.01
48 10 0.08
49 38 0.32
50 1 0.01
51 2 0.02
52 28 0.24
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (48 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAATGAAGATGCCAATA
Found at i:732375 original size:92 final size:94
Alignment explanation
Indices: 732201--732378 Score: 306
Period size: 92 Copynumber: 1.9 Consensus size: 94
732191 GGATGTCAAC
732201 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
1 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAA-GTGCCAATATGCTGATTCAAG
*
732266 GCCAGCTATATTGGACTTAAAGGTGCCAAT
65 GCCAGCGATATTGGACTTAAAGGTGCCAAT
* *
732296 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGA-TGCCAATATGCTGATTCAAGG
1 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGG
732359 CCAGCGATATTGGACTTAAA
66 CCAGCGATATTGGACTTAAA
732379 ATGATGATGA
Statistics
Matches: 80, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
92 40 0.50
94 4 0.05
95 36 0.45
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (94 bp):
GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGTGCCAATATGCTGATTCAAGG
CCAGCGATATTGGACTTAAAGGTGCCAAT
Found at i:732504 original size:265 final size:265
Alignment explanation
Indices: 732031--732643 Score: 1217
Period size: 265 Copynumber: 2.3 Consensus size: 265
732021 GGATGTCAAC
*
732031 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
732096 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
66 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
732161 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
131 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
732226 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
196 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
732291 CCAAT
261 CCAAT
732296 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
732361 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
66 AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
732426 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
131 CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
732491 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
196 GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
732556 CCAAT
261 CCAAT
732561 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
732626 AGCGATATTGGACTTAAA
66 AGCGATATTGGACTTAAA
732644 GGTGCCAATG
Statistics
Matches: 347, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
265 347 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (265 bp):
GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
AGCGATATTGGACTTAAAATGATGATGAGAAAAGTGATAAAGATGCCAATATGTTGCTTCATGGC
CAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAACGTGCTGATTCAAGGCCAGCTACATT
GAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTG
CCAAT
Found at i:732609 original size:49 final size:49
Alignment explanation
Indices: 732467--733122 Score: 855
Period size: 49 Copynumber: 13.6 Consensus size: 49
732457 GATGTCAACG
* *
732467 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGA--TGCCAATA
* *
732519 TGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
732562 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * *
732611 TGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
732654 TGCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * *
732703 TGCTGATTCAAGGCCAG-TGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGATGAAGATGCCAATA
*
732752 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * * *
732801 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
732850 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATA
* * *
732902 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
*
732951 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * *
733000 TGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
*
733043 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
733092 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
733123 GAGGGGTTGC
Statistics
Matches: 532, Mismatches: 49, Indels: 49
0.84 0.08 0.08
Matches are distributed among these distances:
43 104 0.20
44 8 0.02
45 3 0.01
46 5 0.01
47 2 0.00
48 9 0.02
49 322 0.61
50 3 0.01
51 3 0.01
52 73 0.14
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
Found at i:732640 original size:92 final size:93
Alignment explanation
Indices: 732466--733124 Score: 1009
Period size: 92 Copynumber: 6.9 Consensus size: 93
732456 GGATGTCAAC
* * *
732466 GTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAAG
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGA--TGCCAATATGCTGATTCAAG
*
732531 GCCAGCTATATTGGACTTA-AAGGTGCCAAT
63 GCCAGCGATATTGGACTTAGAAGGTGCCAAT
*
732561 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
732626 AGCGATATTGGACTTA-AAGGTGCCAAT
66 AGCGATATTGGACTTAGAAGGTGCCAAT
*
732653 GTGCTGAGTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
*
732718 AGTGATATTGGACTTAAAGATGAAGGTGCCAAT
66 AGCGATATTGGACTT----A-GAAGGTGCCAAT
732751 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
732816 AGCGATATTGGACTTAAAGATGAAGGTGCCAAT
66 AGCGATATTGGACTT----A-GAAGGTGCCAAT
*
732849 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAG
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATATGCTGATTCAAG
*
732914 GCCAGCTATATTGGACTTAAAGATGAAGGTGCCAAT
63 GCCAGCGATATTGGACTT----A-GAAGGTGCCAAT
732950 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
733015 AGCGATATTGGACTTA-AAGGTGCCAAT
66 AGCGATATTGGACTTAGAAGGTGCCAAT
733042 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
1 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
* *
733107 AGCTATATTGGGCTTAGA
66 AGCGATATTGGACTTAGA
733125 GGGGTTGCCA
Statistics
Matches: 540, Mismatches: 14, Indels: 22
0.94 0.02 0.04
Matches are distributed among these distances:
92 216 0.40
93 1 0.00
94 5 0.01
95 36 0.07
96 1 0.00
98 184 0.34
99 1 0.00
100 1 0.00
101 95 0.18
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (93 bp):
GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCC
AGCGATATTGGACTTAGAAGGTGCCAAT
Found at i:733117 original size:389 final size:386
Alignment explanation
Indices: 732400--733122 Score: 1211
Period size: 389 Copynumber: 1.9 Consensus size: 386
732390 AAAAGTGATA
* * * * *
732400 AAGATGCCAATATGTTGCTTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAA
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGAT-AG--AAAGGATGCCAA
* *
732465 CGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATATGCTGATTCAA
63 CGTGCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAA
*
732530 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAA
128 GGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
732595 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGA
193 GATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGA
*
732660 GTCAAGGCCAGCTACATTGGACTTCAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGTGATA
258 GTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGTGATA
732725 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
323 TTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
* *
732789 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G-AAGG-TGCCAATGT
1 AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAGAAAGGATGCCAACGT
*
732851 GCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGC
66 GCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGC
732916 CAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
131 CAGCTATATTGGACTT----A--AAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTT
732981 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
190 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
733046 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCT
255 TGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAG-T
*
733111 -ATATTGGGCTTA
319 GATATTGGACTTA
733123 GAGGGGTTGC
Statistics
Matches: 314, Mismatches: 13, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
383 85 0.27
384 4 0.01
387 2 0.01
389 222 0.71
390 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (386 bp):
AAGATGCCAATATGCTGATTCAAGGCCAACGATATTGGACTTAAAGATAGAAAGGATGCCAACGT
GCTGAGTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATTCAAGGC
CAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT
GAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGAGTC
AAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGTGATATTG
GACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATG
Found at i:733256 original size:32 final size:33
Alignment explanation
Indices: 733127--733252 Score: 220
Period size: 33 Copynumber: 3.8 Consensus size: 33
733117 GGCTTAGAGG
*
733127 GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
733160 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
1 GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
733193 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A
1 GGTTGCCACCGACTTGTGTGGGCTTT-GGAAGAA
733226 -GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCGACTTGTGTGGGCTTTGG
733253 GAAGGAAAAA
Statistics
Matches: 91, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
31 2 0.02
32 25 0.27
33 59 0.65
34 5 0.05
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (33 bp):
GGTTGCCACCGACTTGTGTGGGCTTTGGAAGAA
Found at i:733256 original size:66 final size:66
Alignment explanation
Indices: 733127--733252 Score: 220
Period size: 65 Copynumber: 1.9 Consensus size: 66
733117 GGCTTAGAGG
733127 GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAGA
1 GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAGA
733192 A
66 A
*
733193 GGTTGCCACCGACTTGTGTGGGCTTTAGGAAG-A-GTTGCCACCGACTTGTGTGGGCTTTGG
1 GGTTGCCACCAACTTGTGTGGGCTTT-GGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGG
733253 GAAGGAAAAA
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
65 27 0.47
66 26 0.45
67 5 0.09
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.29
Consensus pattern (66 bp):
GGTTGCCACCAACTTGTGTGGGCTTTGGAAGAAGGTTGCCACCGACTTGTGTGGGCTTTGGAAGA
A
Found at i:733332 original size:70 final size:70
Alignment explanation
Indices: 733257--733932 Score: 530
Period size: 70 Copynumber: 9.4 Consensus size: 70
733247 CTTTGGGAAG
*
733257 GAAAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
1 GAAAAAAG-TGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCT
733320 TTAAAA
65 TTAAAA
733326 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
733391 TAAAA
66 TAAAA
733396 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
733461 TAAACA
66 TAAA-A
* * * ** *
733467 GAAAAAGGTTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGTGCCACAAAGTCGTAGGTG
1 GAAAAAAG-TGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGT-GG-G
****
733532 CCACAGAGTTGTGGGC
63 ---C----TT-TAAAA
*** *** * * **** **** ** **
733548 TTTAAAAG-AAAAAGGTGCCACGGAG-TTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGT
1 GAAAAAAGTGCCACGGAGTTGTGG-GCTT-T--GAAAAGGGAA-----AAAGAGTGCCACGGAGT
*
733611 TGTGGAC-TTAAAA
57 TGTGGGCTTTAAAA
733624 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--GAAAAA-AGTGCCACGGAGTTGTGGG
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGG
733685 CTTTGAAAA
63 CTTT-AAAA
733694 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAA--GAAAAA-AGTGCCACGGAGTTGTGGG
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGG
733755 CTTTGAAAA
63 CTTT-AAAA
733764 GGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAACA--GAAAAAG-GTGCCACGGAGTTGTGG
1 --GAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAAA-AGGGAAAAAGAGTGCCACGGAGTTGTGG
733825 GCTTTGAAAA
62 GCTTT-AAAA
* * *
733835 AAAGAAAGAGTGCCACGAAGTTGTGGGCTTT-AAAA--GAAGAAG-GTGCCACGGAGTTGTGGGC
1 GAA-AAA-AGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGC
733896 TTTAAAAA
64 TTT-AAAA
* *
733904 GAAGAAGGTGCCACGGAGTTGTGGGCTTT
1 GAAAAAAGTGCCACGGAGTTGTGGGCTTT
733933 AAAGAGTGCC
Statistics
Matches: 508, Mismatches: 66, Indels: 68
0.79 0.10 0.11
Matches are distributed among these distances:
67 21 0.04
68 36 0.07
69 52 0.10
70 247 0.49
71 42 0.08
72 46 0.09
73 2 0.00
74 3 0.01
76 1 0.00
77 2 0.00
78 3 0.01
79 12 0.02
80 10 0.02
81 6 0.01
82 5 0.01
86 2 0.00
87 18 0.04
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (70 bp):
GAAAAAAGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
TAAAA
Found at i:733375 original size:105 final size:104
Alignment explanation
Indices: 733241--733935 Score: 571
Period size: 103 Copynumber: 6.5 Consensus size: 104
733231 CACCGACTTG
** *
733241 TGTGGGCTTTGGGAAGGAAAAA-AGATGCCACGGAGTTGTGGAC-TTAAAAGGGAAAAAGAGTGC
1 TGTGGGCTTTGAAAAGGAAAAAGAG-TGCCACGGAGTTGTGGGCTTTAAAA-GGAAAAAGAGTGC
733304 CACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
64 CACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
733345 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAAAAA-AGTGCC
1 TGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCC
733408 ACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
65 ACGGAGTTGTGGGCTTT-AAAA--GAAAAA-AGTGCCACGGAGT
*
733452 TGTGGGCTTT-AAACA-GAAAAAG-GTTGCCACGGAGTTGTGGGCTTTAAAAAGGGAAAGAGAGT
1 TGTGGGCTTTGAAA-AGGAAAAAGAG-TGCCACGGAGTTGTGGGCTTT-AAAA-GGAAAAAGAGT
** * ******* *** * * *
733514 GCCACAAAGTCGTAGGTGCCACAGAGTTGTGGGCTTTAAAAG-AAAAAGGTGC
62 GCCACGGAGTTGT-GG-G---C----TT-TAAAAGAAAAAAGTGCCACGGAGT
*** *** ** ** *
733566 CACGGAG-TTGTGGGCTTTGAAAAGGAAAAAAGAGTGCCACAAAGTTGTGGAC-TTAAAAGGGAA
1 TGTGG-GCTT-T--G--AAAAGGA----AAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GGAA
733629 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
55 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
733679 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAA-GAAAAA-AGTGCC
1 TGTGGGCTTTGAAAA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCC
733742 ACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
65 ACGGAGTTGTGGGCTTT-AAAA--GAAAAA-AGTGCCACGGAGT
*
733786 TGTGGGCTTT-AAACA-GAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAA-AAAGAAAGAGTG
1 TGTGGGCTTTGAAA-AGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AAAAGGAA-AAAGAGTG
* * *
733847 CCACGAAGTTGTGGGCTTTAAAAGAAGAAGGTGCCACGGAGT
63 CCACGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
* *
733889 TGTGGGCTTT-AAAAAGAAGAAG-GTGCCACGGAGTTGTGGGCTTTAAA
1 TGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAA
733936 GAGTGCCACG
Statistics
Matches: 479, Mismatches: 63, Indels: 100
0.75 0.10 0.16
Matches are distributed among these distances:
102 4 0.01
103 99 0.21
104 61 0.13
105 87 0.18
106 43 0.09
107 70 0.15
108 6 0.01
109 14 0.03
110 3 0.01
111 1 0.00
112 8 0.02
113 10 0.02
114 9 0.02
115 4 0.01
116 3 0.01
117 1 0.00
118 2 0.00
119 2 0.00
120 2 0.00
121 2 0.00
122 25 0.05
123 2 0.00
124 20 0.04
125 1 0.00
ACGTcount: A:0.34, C:0.12, G:0.34, T:0.20
Consensus pattern (104 bp):
TGTGGGCTTTGAAAAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCA
CGGAGTTGTGGGCTTTAAAAGAAAAAAGTGCCACGGAGT
Found at i:733589 original size:87 final size:89
Alignment explanation
Indices: 733440--733610 Score: 292
Period size: 87 Copynumber: 1.9 Consensus size: 89
733430 GGGAAAAAGA
* *
733440 GTGCCACGGAGTTGTGGGCTTTAAACAGAAAAAGGTTGCCACGGAGTTGTGGGCTTTAAAAAGGG
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTTGCCACGGAGTTGTGGGCTTTAAAAAGGA
*
733505 AAAGAGAGTGCCACAAAGTCGTAG
66 AAAAAGAGTGCCACAAAGTCGTAG
*
733529 GTGCCACAGAGTTGTGGGCTTTAAA-AGAAAAAGG-TGCCACGGAGTTGTGGGCTTTGAAAAGGA
1 GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTTGCCACGGAGTTGTGGGCTTTAAAAAGGA
733592 AAAAAGAGTGCCACAAAGT
66 AAAAAGAGTGCCACAAAGT
733611 TGTGGACTTA
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
87 45 0.58
88 9 0.12
89 24 0.31
ACGTcount: A:0.33, C:0.14, G:0.33, T:0.20
Consensus pattern (89 bp):
GTGCCACAGAGTTGTGGGCTTTAAACAGAAAAAGGTTGCCACGGAGTTGTGGGCTTTAAAAAGGA
AAAAAGAGTGCCACAAAGTCGTAG
Found at i:733949 original size:27 final size:27
Alignment explanation
Indices: 733911--734083 Score: 112
Period size: 31 Copynumber: 5.8 Consensus size: 27
733901 AAAGAAGAAG
* *
733911 GTGCCACGGAGTTGTGGGCTTTAAAGA
1 GTGCCACGGAGTCGTGGACTTTAAAGA
*
733938 GTGCCACGGAGTCGTGGACTTTGAGACAAA
1 GTGCCACGGAGTCGTGGACTTT-A-A-AGA
* *
733968 ATGCCACTGAGTCGTGGACTTTAAAGAGAA
1 GTGCCACGGAGTCGTGGACTTT-AA-AG-A
* *
733998 GGATGCCACTGCGTCGTGGACTTTGAGCAGAGA
1 -G-TGCCACGGAGTCGTGGACTTT-A--A-AGA
* *
734031 TTGCCACTGAGTCGTGGACTTTGAGAAGA
1 GTGCCACGGAGTCGTGGACTTT-A-AAGA
*
734060 GATTGCCACTGAGTCGTGGACTTT
1 G--TGCCACGGAGTCGTGGACTTT
734084 TTTTTGACTT
Statistics
Matches: 121, Mismatches: 15, Indels: 16
0.80 0.10 0.11
Matches are distributed among these distances:
27 20 0.17
28 1 0.01
29 6 0.05
30 25 0.21
31 43 0.36
32 21 0.17
33 1 0.01
34 4 0.03
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.25
Consensus pattern (27 bp):
GTGCCACGGAGTCGTGGACTTTAAAGA
Found at i:734039 original size:31 final size:31
Alignment explanation
Indices: 733939--734083 Score: 181
Period size: 31 Copynumber: 4.7 Consensus size: 31
733929 CTTTAAAGAG
* *
733939 TGCCACGGAGTCGTGGACTTTGAGACA-A-AA
1 TGCCACTGAGTCGTGGACTTTGAG-CAGAGAT
*
733969 TGCCACTGAGTCGTGGACTTTAAAG-AGAAGGA-
1 TGCCACTGAGTCGTGGACTTT-GAGCAG-A-GAT
*
734001 TGCCACTGCGTCGTGGACTTTGAGCAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
*
734032 TGCCACTGAGTCGTGGACTTTGAGAAGAGAT
1 TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
734063 TGCCACTGAGTCGTGGACTTT
1 TGCCACTGAGTCGTGGACTTT
734084 TTTTTGACTT
Statistics
Matches: 102, Mismatches: 6, Indels: 13
0.84 0.05 0.11
Matches are distributed among these distances:
29 1 0.01
30 22 0.22
31 56 0.55
32 22 0.22
33 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (31 bp):
TGCCACTGAGTCGTGGACTTTGAGCAGAGAT
Found at i:734102 original size:4 final size:4
Alignment explanation
Indices: 734095--734121 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
734085 TTTTGACTTT
734095 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
734122 TTTTTAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:735424 original size:1 final size:1
Alignment explanation
Indices: 735418--735509 Score: 58
Period size: 1 Copynumber: 92.0 Consensus size: 1
735408 ACCTTTGCAC
* * * * * * * * * * *
735418 TTTTTTTTGTGTTTTTTTTTTTTTTGTTTTTTGTGTTTTTGTGTTTTTTGTTTTTTTTGTGTGTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
735483 TTTTTTGTTTGTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTT
735510 CATCACTTCT
Statistics
Matches: 63, Mismatches: 28, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (1 bp):
T
Found at i:735434 original size:9 final size:9
Alignment explanation
Indices: 735420--735504 Score: 90
Period size: 9 Copynumber: 9.7 Consensus size: 9
735410 CTTTGCACTT
735420 TTTTTTGTG
1 TTTTTTGTG
735429 TTTTTT-T-
1 TTTTTTGTG
735436 TTTTTT-TG
1 TTTTTTGTG
735444 TTTTTTGTG
1 TTTTTTGTG
735453 -TTTTTGTG
1 TTTTTTGTG
*
735461 TTTTTTGTTT
1 TTTTTTG-TG
735471 TTTTTGTGTG
1 TTTTT-TGTG
*
735481 TTTTTTTTG
1 TTTTTTGTG
735490 TTTGTTTGT-
1 TTT-TTTGTG
735499 TTTTTT
1 TTTTTT
735505 TTTTTCATCA
Statistics
Matches: 66, Mismatches: 4, Indels: 13
0.80 0.05 0.16
Matches are distributed among these distances:
7 7 0.11
8 18 0.27
9 23 0.35
10 16 0.24
11 2 0.03
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (9 bp):
TTTTTTGTG
Found at i:735438 original size:17 final size:17
Alignment explanation
Indices: 735418--735509 Score: 109
Period size: 18 Copynumber: 5.4 Consensus size: 17
735408 ACCTTTGCAC
735418 TTTTTTTTGTG-TTTTT
1 TTTTTTTTGTGTTTTTT
735434 TTTTTTTT-TGTTTTTT
1 TTTTTTTTGTGTTTTTT
* *
735450 GTGTTTTTGTGTTTTTT
1 TTTTTTTTGTGTTTTTT
735467 GTTTTTTTTGTGTGTTTTT
1 -TTTTTTTTGTGT-TTTTT
735486 TTTGTTTGTT-TGTTTTTT
1 TTT-TTT-TTGTGTTTTTT
735504 TTTTTT
1 TTTTTT
735510 CATCACTTCT
Statistics
Matches: 66, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
15 2 0.03
16 19 0.29
17 11 0.17
18 21 0.32
19 11 0.17
20 2 0.03
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (17 bp):
TTTTTTTTGTGTTTTTT
Found at i:742489 original size:13 final size:13
Alignment explanation
Indices: 742471--742495 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
742461 CAAAGATCAG
742471 TGTATCGATACAA
1 TGTATCGATACAA
742484 TGTATCGATACA
1 TGTATCGATACA
742496 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:742579 original size:13 final size:13
Alignment explanation
Indices: 742561--742585 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
742551 CAAAAAAATA
742561 TGTATCGATACAT
1 TGTATCGATACAT
742574 TGTATCGATACA
1 TGTATCGATACA
742586 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:742581 original size:33 final size:33
Alignment explanation
Indices: 742539--742605 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
742529 AGTAGCTTAA
742539 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
742572 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
742605 A
1 A
742606 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:742997 original size:13 final size:13
Alignment explanation
Indices: 742979--743003 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
742969 CAAAGATCAG
742979 TGTATCGATACAA
1 TGTATCGATACAA
742992 TGTATCGATACA
1 TGTATCGATACA
743004 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:743081 original size:33 final size:33
Alignment explanation
Indices: 743044--743110 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
743034 AGTAGCTTAA
743044 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
743077 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
743110 A
1 A
743111 AATCGTTGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:743084 original size:13 final size:13
Alignment explanation
Indices: 743066--743090 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
743056 CAAAAAAATA
743066 TGTATCGATACAT
1 TGTATCGATACAT
743079 TGTATCGATACA
1 TGTATCGATACA
743091 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:748319 original size:78 final size:78
Alignment explanation
Indices: 748198--748743 Score: 514
Period size: 79 Copynumber: 6.9 Consensus size: 78
748188 ACACCGATGC
* * * *
748198 TTTTATTTCTAAAATATCGACTTTCCACAATCGGGGATACTCCAACTCTGTTATTTTTGAGGGGA
1 TTTTATTTC-AAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGA
* *
748263 TACTTCAAGCC-CAA
65 TACTCCAA-CCTCGA
* * * * * *
748277 TTTTATTTCAAACCA-CTGATTTTTCACCATCGGGGATGCTCCAACCCTATTATTTTCGAGGAGA
1 TTTTATTTCAAAACATC-GATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGA
* *
748341 TACTCCAACCCCGG
65 TACTCCAACCTCGA
* ** *
748355 TTTTATTTCTAAAACATCGATTTTTTACAATCGGGGATACT-CAAATCTCGTTATTTCTG-GGGG
1 TTTTATTTC-AAAACATCGATTTTTCACAATCGGGGATACTCCAACCCT-GTTATTTTTGAGGGG
*
748418 ATACTCCAACCTCGG
64 ATACTCCAACCTCGA
** * * * ** * * * *
748433 TTTTATTTTTAAA-ATACTAATTTTCCACCATCGAAGATACCCCAACACTGTTATTTTAGAGAGG
1 TTTTATTTCAAAACAT-C-GATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGG
*
748497 ATACTCAAACCTCGA
64 ATACTCCAACCTCGA
* * * * *
748512 TTTTATTTCCAAAACATCGA-TTTTCTACAATTGGGAATACTCTAACCCTATTATTTTTGAGGAG
1 TTTTATTT-CAAAACATCGATTTTTC-ACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGG
748576 ATACTCCAACCTCGA
64 ATACTCCAACCTCGA
* * * * *
748591 TTTTATTTCCAAAACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTTGAAGAGA
1 TTTTATTT-CAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGA
* *
748656 TACTCTAACCTCGG
65 TACTCCAACCTCGA
* * *
748670 TTTTATTTTTAAAACA-CTGATTTTTCACAATC-GGGATACTCCAACCCCGTTATTTTTGAGAGG
1 TTTTA-TTTCAAAACATC-GATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGG
748733 ATACTCCAACC
64 ATACTCCAACC
748744 CCATTTTTAT
Statistics
Matches: 378, Mismatches: 74, Indels: 31
0.78 0.15 0.06
Matches are distributed among these distances:
76 2 0.01
77 7 0.02
78 157 0.42
79 197 0.52
80 13 0.03
81 2 0.01
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (78 bp):
TTTTATTTCAAAACATCGATTTTTCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGAT
ACTCCAACCTCGA
Found at i:748487 original size:157 final size:157
Alignment explanation
Indices: 748198--748743 Score: 593
Period size: 157 Copynumber: 3.5 Consensus size: 157
748188 ACACCGATGC
* * *
748198 TTTTATTTCTAAAATATCGACTTTCCACAATCGGGGATACTCCAACTCTGTTATTTTTGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGA
* * * * * *
748263 TACTTCAAGCC-CAATTTTA-TTTCAAACCACTGATTTTTCACCATCGGGGATGCTCCAACCCTA
66 TACTCCAA-CCTCGATTTTATTTTCAAAACACTAATTTTTCACCATCGGGGATACTCCAACCCTG
* * *
748326 TTATTTTCGAGGAGATACTCCAACCCCGG
130 TTATTTTAGA-GAGATACTCAAACCTCGG
** ** *
748355 TTTTATTTCTAAAACATCGATTTTTTACAATCGGGGATACT-CAAATCTCGTTATTTCTG-GGGG
1 TTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCT-GTTATTTTTGAGGGG
* * * * ** * *
748418 ATACTCCAACCTCGGTTTTATTTTTAAAATACTAATTTTCCACCATCGAAGATACCCCAACACTG
65 ATACTCCAACCTCGATTTTATTTTCAAAACACTAATTTTTCACCATCGGGGATACTCCAACCCTG
*
748483 TTATTTTAGAGAGGATACTCAAACCTCGA
130 TTATTTTAGAGA-GATACTCAAACCTCGG
* * * * * * *
748512 TTTTATTTCCAAAACATCGATTTTCTACAATTGGGAATACTCTAACCCTATTATTTTTGAGGAGA
1 TTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGA
* ** *
748577 TACTCCAACCTCGATTTTATTTCCAAAACA-TCAATTTTTCATAATCGGGGATACTCCAACCCCG
66 TACTCCAACCTCGATTTTATTTTCAAAACACT-AATTTTTCACCATCGGGGATACTCCAACCCTG
* *
748641 TTATTTTTGAAGAGATACTCTAACCTCGG
130 TTATTTTAG-AGAGATACTCAAACCTCGG
* * * *
748670 TTTTATTTTTAAAACA-CTGATTTTTCACAATC-GGGATACTCCAACCCCGTTATTTTTGAGAGG
1 TTTTATTTCTAAAACATC-GATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGG
748733 ATACTCCAACC
65 ATACTCCAACC
748744 CCATTTTTAT
Statistics
Matches: 320, Mismatches: 60, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
155 2 0.01
156 26 0.08
157 184 0.57
158 105 0.33
159 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (157 bp):
TTTTATTTCTAAAACATCGATTTTCCACAATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGA
TACTCCAACCTCGATTTTATTTTCAAAACACTAATTTTTCACCATCGGGGATACTCCAACCCTGT
TATTTTAGAGAGATACTCAAACCTCGG
Found at i:750575 original size:20 final size:20
Alignment explanation
Indices: 750552--750624 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
750542 ACAATTCAAA
750552 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
750572 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
750593 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
750613 GTATCGATACAT
1 GTATCGATACAT
750625 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:750596 original size:21 final size:21
Alignment explanation
Indices: 750570--750645 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
750560 ACATGTTGCA
750570 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
750591 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
750611 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
750632 ATGTATCGATACAT
1 ATGTATCGATACAT
750646 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:750603 original size:41 final size:41
Alignment explanation
Indices: 750552--750645 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
750542 ACAATTCAAA
*
750552 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
750593 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
750634 GTATCGATACAT
1 GTATCGATACAT
750646 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:750702 original size:13 final size:13
Alignment explanation
Indices: 750684--750709 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
750674 TACAGCAAGT
750684 ATGTATCGATACA
1 ATGTATCGATACA
750697 ATGTATCGATACA
1 ATGTATCGATACA
750710 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:754780 original size:15 final size:15
Alignment explanation
Indices: 754760--754790 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
754750 TAAAAATGTC
*
754760 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
754775 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
754790 C
1 C
754791 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:756879 original size:13 final size:13
Alignment explanation
Indices: 756861--756897 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
756851 ACATTTTTCC
756861 TTGTATCGATACA
1 TTGTATCGATACA
756874 TTGTATCGATACA
1 TTGTATCGATACA
*
756887 CTGTATCGATA
1 TTGTATCGATA
756898 TAGGGTGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:758757 original size:32 final size:32
Alignment explanation
Indices: 758692--758784 Score: 179
Period size: 32 Copynumber: 2.9 Consensus size: 32
758682 AATTTTGATA
758692 TGAATTACTTGATTAAGGGGGAGA-TTTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTTTT
758723 TGAATTACTTGATTAAGGGGGAGATTTTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTTTT
758755 TGAATTACTTGATTAAGGGGGAGATTTTTT
1 TGAATTACTTGATTAAGGGGGAGATTTTTT
758785 AATAAACGGG
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
31 24 0.39
32 37 0.61
ACGTcount: A:0.26, C:0.03, G:0.26, T:0.45
Consensus pattern (32 bp):
TGAATTACTTGATTAAGGGGGAGATTTTTTTT
Found at i:759428 original size:20 final size:20
Alignment explanation
Indices: 759405--759477 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
759395 ACAATTCAAA
759405 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
759425 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
759446 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
759466 GTATCGATACAT
1 GTATCGATACAT
759478 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:759449 original size:21 final size:21
Alignment explanation
Indices: 759423--759498 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
759413 ACATGTTGCA
759423 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
759444 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
759464 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
759485 ATGTATCGATACAT
1 ATGTATCGATACAT
759499 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:759456 original size:41 final size:41
Alignment explanation
Indices: 759405--759498 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
759395 ACAATTCAAA
*
759405 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
759446 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
759487 GTATCGATACAT
1 GTATCGATACAT
759499 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:759555 original size:13 final size:13
Alignment explanation
Indices: 759537--759562 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
759527 TACAGCAAGT
759537 ATGTATCGATACA
1 ATGTATCGATACA
759550 ATGTATCGATACA
1 ATGTATCGATACA
759563 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:761741 original size:55 final size:55
Alignment explanation
Indices: 761591--762817 Score: 1391
Period size: 55 Copynumber: 21.9 Consensus size: 55
761581 GCAACCTTTC
* * *
761591 TTCAAAGCCCACCCGAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCCTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC-T
* *
761646 TTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTTAAAGAGCAGGACGCCT
1 TTC----AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
761705 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
*
761760 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
761815 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
761870 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAAGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
761925 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
761980 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * **
762035 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
*
762090 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
762145 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
*
762200 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
762255 TTTAAAGCCCACACAAGTTGGTGGCAC-TTCCTAGTCCTCAGAGAGCAGGACGCCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGACGCCT
* ** *
762310 CTT-AAAGCCCACACAAGTTGGTGACACTTCCCAGTCCTCAAAAAGCAGGACGCCTTCTTCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACG----C--CT
* *
762371 TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAATCCTCAAAGAGCAGGATGCTTTTTCTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGACGC-----C-T
*
762432 TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCTAGTCC-CTAAAGAGCAGGATGCCTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTC-AAAGAGCAGGACGCC-T
* * * *
762488 TTCTTTTAAAGCCCACACAAGTTGGCGACATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCT
1 TTC----AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGC-----CT
* * * *
762552 TTTAAAGCCCACCCGAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCCTTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC--T
* * *
762608 TCTCTTAAAGCCAACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCT
1 T-TC--AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
762666 TTCGAAGCCCACATAAGTTGGTGG-------CA-TCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
762713 CTT-AAAGCCCACACAAGTTGGCGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * * * *
762768 TTCAAAGCCCACACGAGTTTGTGGCACTTTTTACTCCTCAATGAGCAGGA
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
762818 TACACTTTAT
Statistics
Matches: 1023, Mismatches: 88, Indels: 122
0.83 0.07 0.10
Matches are distributed among these distances:
47 39 0.04
48 4 0.00
54 23 0.02
55 635 0.62
56 28 0.03
57 4 0.00
58 2 0.00
59 71 0.07
60 116 0.11
61 97 0.09
64 3 0.00
65 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (55 bp):
TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
Found at i:762721 original size:47 final size:47
Alignment explanation
Indices: 762645--762786 Score: 151
Period size: 47 Copynumber: 2.9 Consensus size: 47
762635 CACCTTTCAG
* * *
762645 TCCTCAAAGAGCAGGACACCTTTCGAAGCCCACATAAGTTGGTGGCA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGCGGCA
762692 TCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGCGGCACCTTTCA
1 TCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGCGG-------CA
* *
762746 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTT
1 -TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTT
762787 TGTGGCACTT
Statistics
Matches: 80, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
47 39 0.49
48 2 0.03
54 4 0.05
55 35 0.44
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (47 bp):
TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGCGGCA
Found at i:763282 original size:21 final size:21
Alignment explanation
Indices: 763258--763334 Score: 111
Period size: 21 Copynumber: 3.7 Consensus size: 21
763248 AAAATTTCCA
763258 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
763279 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
* *
763300 AATGTATCGATACA-TTCTACA
1 AATGTATCGATACATTTGTA-G
763321 AATGTATCGATACA
1 AATGTATCGATACA
763335 GGGTCCTAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
20 3 0.06
21 48 0.94
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:763407 original size:31 final size:32
Alignment explanation
Indices: 763372--763433 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 32
763362 TACAACAATT
763372 TGTATCGATACATAAGT-TTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
763403 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
763434 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 17 0.57
32 13 0.43
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:763408 original size:13 final size:13
Alignment explanation
Indices: 763390--763414 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
763380 TACATAAGTT
763390 TGTATCGATACAA
1 TGTATCGATACAA
763403 TGTATCGATACA
1 TGTATCGATACA
763415 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:763427 original size:19 final size:19
Alignment explanation
Indices: 763371--763436 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
763361 ATACAACAAT
763371 TTGTATCGATACATAAGT-
1 TTGTATCGATACATAAGTA
763389 TTGTATCGATAC---A--A
1 TTGTATCGATACATAAGTA
763403 -TGTATCGATACATAAGTA
1 TTGTATCGATACATAAGTA
763421 TTGTATCGATACATAA
1 TTGTATCGATACATAA
763437 TTAGCTACTG
Statistics
Matches: 41, Mismatches: 0, Indels: 13
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.27
15 1 0.02
16 1 0.02
18 13 0.32
19 15 0.37
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:763494 original size:13 final size:13
Alignment explanation
Indices: 763476--763501 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
763466 CATTTTTCTG
763476 TGTATCGATACAT
1 TGTATCGATACAT
763489 TGTATCGATACAT
1 TGTATCGATACAT
763502 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:763498 original size:33 final size:33
Alignment explanation
Indices: 763456--763522 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
763446 GCCAAAGAAA
***
763456 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
763489 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
763522 T
1 T
763523 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:765936 original size:51 final size:51
Alignment explanation
Indices: 765855--766242 Score: 186
Period size: 51 Copynumber: 7.4 Consensus size: 51
765845 AATTCTCCGC
* * * *
765855 AATCAGGGATATTCCATCTCTGATTTTATTTTCAAAACACTAATTTTCTAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTAT
*
765906 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAAAACACAAATTTT-TCAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC---AAAACACTAATTTTCT-AT
* * ** * * * *
765960 AATCGGAGATACTCCAACCCCG-TTAATCATCGGGGATACTCCAACCCCGTTA-TTTC--T
1 AATCGGGGATACTCCAACTCCGATT--T--T-----ATTTTCAAAACAC-TAATTTTCTAT
* * * * * * * *
766017 GA--GGGGATACTCCAACCCCGACTTTATCTCCAAAATATTGATTTT-TCAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCT-AT
* * * *
766066 AATCGGGGATACTCCAA-TCCCGGTTTTA-TTGCTAAAACACTAATTTTTCCAC
1 AATCGGGGATACTCCAACT-CCGATTTTATTTTC-AAAACACTAA-TTTTCTAT
* * * *
766118 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCCTTT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACTAATTTT--CTAT
* * *
766171 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAAATACCAATTTT-TCAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTTC---AAAACACTAATTTTCT-AT
*
766225 AATCGAGGATACTCCAAC
1 AATCGGGGATACTCCAAC
766243 CTCGTTATTT
Statistics
Matches: 254, Mismatches: 49, Indels: 65
0.69 0.13 0.18
Matches are distributed among these distances:
46 2 0.01
47 8 0.03
49 2 0.01
50 2 0.01
51 60 0.24
52 41 0.16
53 38 0.15
54 54 0.21
55 18 0.07
56 14 0.06
57 3 0.01
59 7 0.03
60 1 0.00
62 4 0.02
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (51 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTAT
Found at i:765971 original size:54 final size:51
Alignment explanation
Indices: 765862--765977 Score: 144
Period size: 54 Copynumber: 2.2 Consensus size: 51
765852 CGCAATCAGG
* * * * *
765862 GATATTCCATCTCTGATTTTATTTTCAAAACACTAATTTTCTATAATCGGG
1 GATACTCCAACTCCGATTTTATTTTCAAAACACAAATTTTCTATAATCGGA
765913 GATACTCCAACTCCGATTTTATTTTCAAAAAAACACAAATTTT-TCATAATCGGA
1 GATACTCCAACTCCGATTTTATTTTC---AAAACACAAATTTTCT-ATAATCGGA
765967 GATACTCCAAC
1 GATACTCCAAC
765978 CCCGTTAATC
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
51 23 0.41
53 1 0.02
54 32 0.57
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (51 bp):
GATACTCCAACTCCGATTTTATTTTCAAAACACAAATTTTCTATAATCGGA
Found at i:765997 original size:27 final size:28
Alignment explanation
Indices: 765961--766036 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
765951 ATTTTTCATA
*
765961 ATCGGAGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
765988 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
766016 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
766037 ACTTTATCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:766031 original size:28 final size:27
Alignment explanation
Indices: 765967--766036 Score: 97
Period size: 28 Copynumber: 2.6 Consensus size: 27
765957 CATAATCGGA
*
765967 GATACTCCAACCCCGTTAATCATCGGG
1 GATACTCCAACCCCGTTAATCATAGGG
*
765994 GATACTCCAACCCCGTTATTTC-TGAGGG
1 GATACTCCAACCCCGTTA-ATCAT-AGGG
766022 GATACTCCAACCCCG
1 GATACTCCAACCCCG
766037 ACTTTATCTC
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
27 19 0.49
28 20 0.51
ACGTcount: A:0.24, C:0.34, G:0.19, T:0.23
Consensus pattern (27 bp):
GATACTCCAACCCCGTTAATCATAGGG
Found at i:766144 original size:52 final size:51
Alignment explanation
Indices: 766019--766243 Score: 202
Period size: 52 Copynumber: 4.3 Consensus size: 51
766009 TTATTTCTGA
* * * * *
766019 GGGGATACTCCAACCCCGACTTTATCTCCAAAATATTGATTTTT-CATAATC
1 GGGGATACTCCAACCCCGATTTTAT-TCTAAAACACTAATTTTTCCATAATC
* * *
766070 GGGGATACTCCAATCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATT-CTAAAACACTAATTTTTCCATAATC
* * * * *
766122 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATTCT-AAAACACTAATTTTTCC-ATAATC
* * * *
766175 GGGGATACTCCAACTCCGATTTTATTTCCAAAAAAATACCAATTTTT-CATAATC
1 GGGGATACTCCAACCCCGATTTTA-TT-C--TAAAACACTAATTTTTCCATAATC
*
766229 GAGGATACTCCAACC
1 GGGGATACTCCAACC
766244 TCGTTATTTC
Statistics
Matches: 143, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
50 1 0.01
51 36 0.25
52 46 0.32
53 26 0.18
54 20 0.14
55 1 0.01
56 13 0.09
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTCTAAAACACTAATTTTTCCATAATC
Found at i:766262 original size:28 final size:28
Alignment explanation
Indices: 766226--766302 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
766216 ATTTTTCATA
* * *
766226 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
766254 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
766282 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
766303 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:772686 original size:55 final size:55
Alignment explanation
Indices: 772536--773933 Score: 1598
Period size: 55 Copynumber: 24.9 Consensus size: 55
772526 GCAACCTTTC
* * *
772536 TTCAAAGCCCACCCGAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCCTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC-T
* *
772591 TTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCG
1 TTC----AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
772650 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
*
772705 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
772760 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
772815 CTT-AAAGCCCACATAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * * *
772870 TTCAAAGCTCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
*
772925 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
772980 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
773035 CTT-AAAGCCCACACAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
773090 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
773145 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * * *
773200 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
773255 CTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* ** *
773310 TTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
773365 TCTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCTAGTCCTCAGAGAGCAGGACGCCT
1 T-T-C----AAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGACGCCT
** *
773426 CTT-AAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAAAGCAGGACGCCTTCTTTT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACG-C--C---T
* * *
773487 TTCAAAGCCCACGCAAGTTGGTGGCA-TTTTCCAATCCTCAAAGAGCAGGATGCTTTTTCTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGACGC-----C-T
*
773548 TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCCCAAAGAGCAGGACGCCTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGACGCC-T
* *
773604 TTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCT
1 TTC----AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGC-----CT
* * * *
773668 TTTAAAGCCCACCCGAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACGCCTTT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCC--T
* *
773724 TCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTT-AGTCCTCAAAGAGTAGGACACCT
1 T-TC--AAAGCCCACACAAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
773782 TTCGAAGCCCACACAAGTTGGTGG-------CA-TCCTCAAAGAGCAGGACACCT
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
773829 CTT-AAAGCCCACACAAGTTGGCGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
1 -TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
* * * * *
773884 TTCAAAGCCCACACGAGTTTGTGGCACTTTTTACTCCTCAATGAGCAGGA
1 TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
773934 TACACTTTAT
Statistics
Matches: 1165, Mismatches: 114, Indels: 128
0.83 0.08 0.09
Matches are distributed among these distances:
47 39 0.03
48 3 0.00
54 17 0.01
55 735 0.63
56 25 0.02
57 3 0.00
58 3 0.00
59 66 0.06
60 124 0.11
61 142 0.12
62 1 0.00
63 3 0.00
64 3 0.00
65 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (55 bp):
TTCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT
Found at i:772733 original size:110 final size:110
Alignment explanation
Indices: 772536--773933 Score: 1879
Period size: 110 Copynumber: 12.5 Consensus size: 110
772526 GCAACCTTTC
* * * *
772536 TTCAAAGCCCACCCGAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTAA
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACC---TC--TTAA
*
772600 AGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCG
61 AGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
772650 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
772715 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
66 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
772760 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
*
772825 ACATAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
66 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
*
772870 TTCAAAGCTCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
772935 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
66 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
772980 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
* *
773045 ACACAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCT
66 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
773090 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
*
773155 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCT
66 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
*
773200 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACACCTCTTAAAGCCC
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
*
773265 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAAAGCAGGACGCCT
66 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
* * ***
773310 TTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACACCTTCTCCTTTTA
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACA-C--CT-C--TTA
* *
773375 AAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAGAGAGCAGGACGCCT
60 AAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGACGCCT
* *** * *
773426 CTT-AAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAAAGCAGGACGCCTTCTTTTTTC
1 -TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACC-TC----TT-
* * * *
773490 AAAGCCCACGCAAGTTGGTGGCA-TTTTCCAATCCTCAAAGAGCAGGATGCTTTTTCTT
59 AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGC-----C-T
* * * *
773548 TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCCCAAAGAGCAGGACGCCTTTTCTTTTA
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGGACACC---TC--TTA
** *
773612 AAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCT
60 AAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC-----CT
* * * *
773668 TTTAAAGCCCACCCGAGTTGGTGGCAC-CTTTAGTCCTCAAAGAGCAGGACGCCTTTTCTCTTAA
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGAC-AC----CTCTTAA
* * *
773732 AGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACACCT
61 AGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
* *
773782 TTCGAAGCCCACACAAGTTGGTGG--C-----A-TCCTCAAAGAGCAGGACACCTCTTAAAGCCC
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
*
773839 ACACAAGTTGGCGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
66 ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
* * *
773884 TTCAAAGCCCACACGAGTTTGTGGCACTTTTTACTCCTCAATGAGCAGGA
1 TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
773934 TACACTTTAT
Statistics
Matches: 1181, Mismatches: 64, Indels: 82
0.89 0.05 0.06
Matches are distributed among these distances:
102 74 0.06
104 1 0.00
106 1 0.00
107 17 0.01
108 1 0.00
109 1 0.00
110 654 0.55
111 1 0.00
112 3 0.00
113 4 0.00
114 50 0.04
115 32 0.03
116 135 0.11
117 3 0.00
119 64 0.05
120 27 0.02
121 56 0.05
122 53 0.04
124 4 0.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (110 bp):
TTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACACCTCTTAAAGCCC
ACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCT
Found at i:773837 original size:47 final size:47
Alignment explanation
Indices: 773761--773902 Score: 151
Period size: 47 Copynumber: 2.9 Consensus size: 47
773751 CACCTTTTAG
* * *
773761 TCCTCAAAGAGTAGGACACCTTTCGAAGCCCACACAAGTTGGTGGCA
1 TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGCGGCA
773808 TCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGCGGCACCTTTCA
1 TCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGCGG-------CA
* *
773862 GTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTT
1 -TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTT
773903 TGTGGCACTT
Statistics
Matches: 80, Mismatches: 5, Indels: 12
0.82 0.05 0.12
Matches are distributed among these distances:
47 39 0.49
48 2 0.03
54 4 0.05
55 35 0.44
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.18
Consensus pattern (47 bp):
TCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGCGGCA
Found at i:773885 original size:102 final size:102
Alignment explanation
Indices: 773725--773909 Score: 307
Period size: 102 Copynumber: 1.8 Consensus size: 102
773715 GACGCCTTTT
* * * *
773725 CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGACACCTTTCGAAGC
1 CTCTTAAAGCCCACACAAGTTGGCGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
773790 CCACACAAGTTGGTGGCATCCTCAAAGAGCAGGACAC
66 CCACACAAGTTGGTGGCATCCTCAAAGAGCAGGACAC
*
773827 CTCTTAAAGCCCACACAAGTTGGCGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
1 CTCTTAAAGCCCACACAAGTTGGCGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
* *
773892 CCACACGAGTTTGTGGCA
66 CCACACAAGTTGGTGGCA
773910 CTTTTTACTC
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
102 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (102 bp):
CTCTTAAAGCCCACACAAGTTGGCGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
CCACACAAGTTGGTGGCATCCTCAAAGAGCAGGACAC
Found at i:774419 original size:21 final size:21
Alignment explanation
Indices: 774372--774429 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
774362 AAAAATTTTC
*
774372 CAAATGTATCGATACATTTGT
1 CAAATGTATCGATACATTTGA
**
774393 GGAATGTATCGATACATTCT-A
1 CAAATGTATCGATACATT-TGA
774414 CAAATGTATCGATACA
1 CAAATGTATCGATACA
774430 GGGTCCCAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 30 0.97
22 1 0.03
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (21 bp):
CAAATGTATCGATACATTTGA
Found at i:774489 original size:19 final size:19
Alignment explanation
Indices: 774465--774532 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
774455 AATTCAACAA
774465 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
774484 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
774499 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
774516 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
774533 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:774504 original size:13 final size:13
Alignment explanation
Indices: 774486--774510 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
774476 ACATAAGTTT
774486 TGTATCGATACAA
1 TGTATCGATACAA
774499 TGTATCGATACA
1 TGTATCGATACA
774511 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:774508 original size:32 final size:32
Alignment explanation
Indices: 774467--774529 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
774457 TTCAACAATT
*
774467 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
774499 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
774530 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:776988 original size:51 final size:52
Alignment explanation
Indices: 776912--777291 Score: 172
Period size: 51 Copynumber: 7.2 Consensus size: 52
776902 CCGCAATCAT
* * *
776912 GGATATTCCATCTCCGATTTTATTTTC-AAAACACTAATTTTCTATAATCGG
1 GGATACTCCAACTCCGATTTTATTTTCAAAAACACCAATTTTCTATAATCGG
* *
776963 GGATACTCCAACTCCGATTTTATTTTCAAAAAACACAAATTTT-TCACAATCGG
1 GGATACTCCAACTCCGATTTTATTTTC-AAAAACACCAATTTTCT-ATAATCGG
* * * ** ** * * *** **
777016 AGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAA-CCCCGTTATTTTCGAGG
1 GGATACTCCAACTCCGATTTTATTTTC--AAAAACACCAATTTTC--TATAATC--GG
* * * * *** * *
777071 GGATACTCCAACCCCGACTTTATCTCCAAAATA-TTGACTTTTC-ATAATCGA
1 GGATACTCCAACTCCGATTTTATTTTCAAAA-ACACCAATTTTCTATAATCGG
* * * * *
777122 GGATACTCCAA-TCCCGGTTTTA-TTGCTAAAACACCAATTTTTCCACAATCGG
1 GGATACTCCAACT-CCGATTTTATTTTCAAAAACACCAA-TTTTCTATAATCGG
* * * *
777174 GGATACTCCAACCCCGGTTTTATTTGC--AAACACCAATTTTCCCTTTAATCGG
1 GGATACTCCAACTCCGATTTTATTTTCAAAAACACCAATTTT--CTATAATCGG
* * *
777226 GGATACTCCAACTCCGATTTTATTTCCAAAAAAATACCAATTTT-TCATAATCGA
1 GGATACTCCAACTCCGATTTTATTTTC--AAAAACACCAATTTTCT-ATAATCGG
777280 GGATACTCCAAC
1 GGATACTCCAAC
777292 CTCGTTATTT
Statistics
Matches: 244, Mismatches: 59, Indels: 49
0.69 0.17 0.14
Matches are distributed among these distances:
49 1 0.00
50 10 0.04
51 64 0.26
52 64 0.26
53 46 0.19
54 19 0.08
55 20 0.08
56 14 0.06
57 6 0.02
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.32
Consensus pattern (52 bp):
GGATACTCCAACTCCGATTTTATTTTCAAAAACACCAATTTTCTATAATCGG
Found at i:777021 original size:53 final size:51
Alignment explanation
Indices: 776913--777027 Score: 151
Period size: 53 Copynumber: 2.2 Consensus size: 51
776903 CGCAATCATG
* * * * *
776913 GATATTCCATCTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGG
1 GATACTCCAACTCCGATTTTATTTTCAAAACACAAATTTTCTACAATCGGA
776964 GATACTCCAACTCCGATTTTATTTTCAAAAAACACAAATTTT-TCACAATCGGA
1 GATACTCCAACTCCGATTTTATTTTC--AAAACACAAATTTTCT-ACAATCGGA
777017 GATACTCCAAC
1 GATACTCCAAC
777028 CCCGTTAATC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
51 24 0.43
52 1 0.02
53 31 0.55
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.35
Consensus pattern (51 bp):
GATACTCCAACTCCGATTTTATTTTCAAAACACAAATTTTCTACAATCGGA
Found at i:777081 original size:28 final size:27
Alignment explanation
Indices: 777011--777086 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
777001 ATTTTTCACA
*
777011 ATCGGAGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
777038 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
777064 TTCGAGGGGATACTCCAACCCCG
1 ATC--GGGGATACTCCAACCCCG
777087 ACTTTATCTC
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 4 0.09
27 22 0.50
28 18 0.41
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.22
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:777194 original size:52 final size:52
Alignment explanation
Indices: 777109--777292 Score: 205
Period size: 52 Copynumber: 3.5 Consensus size: 52
777099 AAATATTGAC
*
777109 TTTT-CATAATCGAGGATACTCCAATCCCGGTTTTA-TTGCTAAAACACCAAT
1 TTTTCCATAATCGAGGATACTCCAACCCCGGTTTTATTTGC-AAAACACCAAT
* *
777160 TTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTGC-AAACACCAAT
1 TTTTCCATAATCGAGGATACTCCAACCCCGGTTTTATTTGCAAAACACCAAT
* * * * * * *
777211 TTTCCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAAATACCAAT
1 TTTTCC-ATAATCGAGGATACTCCAACCCCGGTTTTATTTGC---AAAACACCAAT
777267 TTTT-CATAATCGAGGATACTCCAACC
1 TTTTCCATAATCGAGGATACTCCAACC
777293 TCGTTATTTC
Statistics
Matches: 112, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
51 19 0.17
52 58 0.52
53 4 0.04
54 18 0.16
55 1 0.01
56 12 0.11
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (52 bp):
TTTTCCATAATCGAGGATACTCCAACCCCGGTTTTATTTGCAAAACACCAAT
Found at i:777311 original size:28 final size:28
Alignment explanation
Indices: 777275--777351 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
777265 ATTTTTCATA
* * *
777275 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
777303 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
777331 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
777352 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.34, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:777488 original size:78 final size:79
Alignment explanation
Indices: 777305--777508 Score: 214
Period size: 78 Copynumber: 2.6 Consensus size: 79
777295 GTTATTTCAT
* * *
777305 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGATTTATTCCCAAAATAT
* * *
777370 TGATTTCTCATAAT
66 CGATTTCTCACAAC
* * * * * ** *
777384 TGGGGATACTCCAATCCCATTATTTTCGAGGGGATACTCCAATCTC-GATTTATTTTC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGATTTATTCCCAAAAT-A
777447 TCGATTTCTCACAAC
65 TCGATTTCTCACAAC
* * * * *
777462 CGGGGATACTCCAGCCCCGTTGTTTTCAAGGGAACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
777509 CTATTATCTC
Statistics
Matches: 99, Mismatches: 24, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
77 3 0.03
78 57 0.58
79 39 0.39
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGATTTATTCCCAAAATAT
CGATTTCTCACAAC
Found at i:782720 original size:30 final size:30
Alignment explanation
Indices: 782654--782722 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
782644 TTGTAAAACA
* *
782654 ACCTTTTTTCAAAGTCCACGGCTTAGTGAC
1 ACCTCTTTTCAAAGTCCACGACTTAGTGAC
* *
782684 ATCTCTTTTCAAAGTCCACGACTCT-GTGGC
1 ACCTCTTTTCAAAGTCCACGACT-TAGTGAC
782714 ACCTCTTTT
1 ACCTCTTTT
782723 GGCCTTTTAG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.20, C:0.29, G:0.14, T:0.36
Consensus pattern (30 bp):
ACCTCTTTTCAAAGTCCACGACTTAGTGAC
Found at i:783606 original size:62 final size:62
Alignment explanation
Indices: 782725--783606 Score: 920
Period size: 62 Copynumber: 14.3 Consensus size: 62
782715 CCTCTTTTGG
* * *
782725 CCTTTTAGTCCTCAAAGAGCA--A-GCCGTTTTT-TTTTTCAAAGCCCACACGAATTGGTGGCT
1 CCTTTTAGTCCTCAAAGAGCAGGATGCC-TTTTTCTTTTT-AAAGCCTACACGAGTTGGTGGCA
** * * * *
782785 CCTTTTAGTCCTCAAAGAATAGAATGCC-TTTTCTTTTTGAAAGCCCACATGAGTTGATGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTT-AAAGCCTACACGAGTTGGTGGCA
* **
782847 CCCTTTT-GTCCTCAAAGAGTAGGACACCTTTTTCTTTTTAAAGTCC-ACACGAGTTGGTGGCA
1 -CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAG-CCTACACGAGTTGGTGGCA
* * ** * *
782909 CCTTTTTGTCCTCAAAGAGTAGGACACCTTTTTCTTTTTAAAGCCCACACGAGTTGCTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
* * *** *
782971 CCTTTTTGTCCTCAAATAATGGGATGCCTTTTTCTTTTCAAAGCCTACACGAGTTGGTGGCAA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGC-A
* * * * *
783034 CCTTTT-GTCCTCAAAGAGCAGGACGTCTTTTT-TTTTTCAAAGCCCACACAAATTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTT-AAAGCCTACACGAGTTGGTGGCA
* * * * *
783095 CCCTTTAGTCCTCAAAGAGTAGGACG-C-ATTT-TTTTTAAAG-CTCACATGAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCT-ACACGAGTTGGTGGCA
*
783154 CCTTTTAGTCCTCAAAGAGCAGGATGCC-TTTTCGTTTTAAAGCCTACACGAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
* * * * *
783215 CCTTTTAGTCTTCAAAGAGTAGGATGCC-TTTTCGTTTTAAAGCCTACACGAGCTGGTAGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
* * *
783276 CCCTTTT-GTCCTCAAAGAGCAGGATACCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
1 -CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
* * *
783338 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTAGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
* * ** * * ** *
783400 CCCTTTT-GTCCTCAAAAAGTAGGATGCCTTTTTCTTTCCAAGGCCTATATAAGTTGATGGCA
1 -CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
* * * ** * **
783462 CCCTTTAGTCTTCAGAGAGCAGGATGTTTTTTTCTTTTCAAAGTCC-ACACGAGTCAGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAG-CCTACACGAGTTGGTGGCA
* * *
783524 CCCTTTT-GTCCTCAAAGAGCAGAATGCCTTTCTCTTTTTAAAGCCTACACGAGTTAGTGGCA
1 -CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
*
783586 CCTTTTAGTCCTCAAGGAGCA
1 CCTTTTAGTCCTCAAAGAGCA
783607 AGACACTTTC
Statistics
Matches: 697, Mismatches: 100, Indels: 48
0.82 0.12 0.06
Matches are distributed among these distances:
58 1 0.00
59 40 0.06
60 31 0.04
61 139 0.20
62 446 0.64
63 40 0.06
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (62 bp):
CCTTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTTAAAGCCTACACGAGTTGGTGGCA
Found at i:783673 original size:42 final size:42
Alignment explanation
Indices: 783620--784283 Score: 445
Period size: 42 Copynumber: 16.2 Consensus size: 42
783610 CACTTTCCTT
* * * * *
783620 ATTTTCCTTTTTCCTCTATCCTCAAAGAGTAGGGCGCACCTC
1 ATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * *
783662 ATTTTCTTTTTTTCCCTTAGTCCTCAAAGAGCAGGATGC-C-T-
1 ATTTTC-TTTTTT-CCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * *
783703 -TTTCCTTTTTTCCTTTGTCCTTAAAGAGTAGGACACATTTC
1 ATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * *
783744 ATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGATGCACTTT
1 ATTTTCTT-TTTT-CCTTTGTCCTCAAAGAGTAGGACGCACTTC
* *
783788 A-TTTCTTTCTCTCCTTTGTCCTCAAAGAGTAGGACGCACTTA
1 ATTTTCTTT-TTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* **
783830 ATTTCCTTCTTTTCCTTTGTCCTCAAAGAGTAGGGTGC-CTT-
1 ATTTTCTT-TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * *
783871 -TTCTT-TTTTTTCCTTTGTCCTCAAAGAGCAGGGCGCATTTT
1 ATT-TTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * *
783912 A-TTTCCTTTTTCCTTTATCCTCAAAGAGTAGGGCGCACTTC
1 ATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * *
783953 ATTTCCTACTTTTCTTTTGTCCTCAAAGAGTAGGACAC-CTT-
1 ATTTTCT-TTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * *
783994 -TTCCTTTTTTTTTCCTTTATCCTCAAAGAGTAGTATGCACATT-
1 ATT--TTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCAC-TTC
* * *
784037 ATTTCCTTTTCTT-CTTTATCCTCAAAGAGTAGGACACACTTC
1 ATTTTCTTTT-TTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * *
784079 A-TTTCTTTCTTCTCTTTTGTCCTCAAAGGGTAGGACACACTTT
1 ATTTTCTTT-TT-TCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * *
784122 ATTTCCTTTTTTCCTTTGTCCTCGAAGAGTA-G--G-A-TGC
1 ATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * *
784159 A--TTCTTTTTCCCTTTATCTTCAAAGAGTA-G--G-A-TGC
1 ATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
* * * * * *
784194 A--TTCTTTTTCCCTTTGTCCTCAAAGAGCAAGATGCATTTT
1 ATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
** *
784234 A-TTTCTTTTTCTTTTTTGTCCTCAAAGAGTAGGACGCACCTC
1 ATTTTCTTTTT-TCCTTTGTCCTCAAAGAGTAGGACGCACTTC
784276 ATTTTCTT
1 ATTTTCTT
784284 CTTCCTCGAA
Statistics
Matches: 496, Mismatches: 89, Indels: 73
0.75 0.14 0.11
Matches are distributed among these distances:
35 55 0.11
36 1 0.00
37 2 0.00
38 22 0.04
39 34 0.07
40 17 0.03
41 76 0.15
42 126 0.25
43 110 0.22
44 53 0.11
ACGTcount: A:0.19, C:0.24, G:0.14, T:0.43
Consensus pattern (42 bp):
ATTTTCTTTTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTC
Found at i:783854 original size:43 final size:42
Alignment explanation
Indices: 783628--784155 Score: 458
Period size: 43 Copynumber: 12.6 Consensus size: 42
783618 TTATTTTCCT
* * * * * *
783628 TTTTCCTCTATCCTCAAAGAGTAGGGCGCACCTCATTTTCTTT
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCA-CTTATTTCCTTC
* * *
783671 TTTTCCCTTAGTCCTCAAAGAGCAGGATGC-C-T-TTTCCTT-
1 TTTT-CCTTTGTCCTCAAAGAGTAGGACGCACTTATTTCCTTC
* * *
783710 TTTTCCTTTGTCCTTAAAGAGTAGGACACATTTCATTTCCTTC
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTT-ATTTCCTTC
* * *
783753 TTTTCCCTTTGTCCTCAAAGAGCAGGATGCACTTTATTTCTTTC
1 TTTT-CCTTTGTCCTCAAAGAGTAGGACGCAC-TTATTTCCTTC
*
783797 -TCTCCTTTGTCCTCAAAGAGTAGGACGCACTTAATTTCCTTC
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTT-ATTTCCTTC
** * *
783839 TTTTCCTTTGTCCTCAAAGAGTAGGGTGC-C-T-TTTCTTTT
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTATTTCCTTC
* * *
783878 TTTTCCTTTGTCCTCAAAGAGCAGGGCGCATTTTATTTCC-T-
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCA-CTTATTTCCTTC
* * *
783919 TTTTCCTTTATCCTCAAAGAGTAGGGCGCACTTCATTTCCTAC
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTT-ATTTCCTTC
* * *
783962 TTTTCTTTTGTCCTCAAAGAGTAGGA--CACCT-TTTCCTTTTT
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTATTTCC--TTC
* * *
784003 TTTTCCTTTATCCTCAAAGAGTAGTATGCACATTATTTCCTT-
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCAC-TTATTTCCTTC
* * *
784045 TTCTT-CTTTATCCTCAAAGAGTAGGACACACTTCATTTCTTTC
1 TT-TTCCTTTGTCCTCAAAGAGTAGGACGCACTT-ATTTCCTTC
* * * *
784088 TTCTCTTTTGTCCTCAAAGGGTAGGACACACTTTATTTCCTT-
1 TTTTCCTTTGTCCTCAAAGAGTAGGACGCAC-TTATTTCCTTC
*
784130 TTTTCCTTTGTCCTCGAAGAGTAGGA
1 TTTTCCTTTGTCCTCAAAGAGTAGGA
784156 TGCATTCTTT
Statistics
Matches: 397, Mismatches: 60, Indels: 57
0.77 0.12 0.11
Matches are distributed among these distances:
38 20 0.05
39 42 0.11
40 9 0.02
41 67 0.17
42 99 0.25
43 101 0.25
44 52 0.13
45 7 0.02
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42
Consensus pattern (42 bp):
TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTATTTCCTTC
Found at i:783882 original size:168 final size:165
Alignment explanation
Indices: 783629--784272 Score: 588
Period size: 168 Copynumber: 3.9 Consensus size: 165
783619 TATTTTCCTT
* * * * * *
783629 TTTCCTCTATCCTCAAAGAGTAGGGCGCACCTCATTTTCTTTTTTTCCCTTAGTCCTCAAAGAGC
1 TTTCCTTTGTCCTCAAAGAGTAGGACGCACCT-ATTTCCTTTTTTT-CCTTTGTCCTCAAAGAGT
* *
783694 AGGATGCCTTTTCCTTTTTTCCTTTGTCCTTAAAGAGTAGGACACATTTCATTTCCTTCTTTTCC
64 AGGATGCCTTTTCTTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTCCTTCTTTT-C
* *
783759 CTTTGTCCTCAAAGAGCAGGATGCACTTTATTTCTTTC
128 CTTTGTCCTCAAAGAGTAGGACGCACTTTATTTCTTTC
* * *
783797 TCTCCTTTGTCCTCAAAGAGTAGGACGCACTTAATTTCCTTCTTTTCCTTTGTCCTCAAAGAGTA
1 TTTCCTTTGTCCTCAAAGAGTAGGACGCACCT-ATTTCCTTTTTTTCCTTTGTCCTCAAAGAGTA
* * * * *
783862 GGGTGCCTTTTCTTTTTTTTCCTTTGTCCTCAAAGAGCAGGGCGCATTTTATTTCC-T-TTTTCC
65 GGATGCCTTTTC-TTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTCCTTCTTTTCC
* * * * *
783925 TTTATCCTCAAAGAGTAGGGCGCACTTCATTTCCTAC
129 TTTGTCCTCAAAGAGTAGGACGCACTTTATTTCTTTC
* *
783962 TTTTCTTTTGTCCTCAAAGAGTAGGA--CACCT-TTTCCTTTTTTTTTCCTTTATCCTCAAAGAG
1 -TTTCCTTTGTCCTCAAAGAGTAGGACGCACCTATTTCC--TTTTTTTCCTTTGTCCTCAAAGAG
* * * * *
784024 TAGTATGCACATTATTTCCTTTTCTT-CTTTATCCTCAAAGAGTAGGACACACTTCATTTCTTTC
63 TAGGATGC-C--T-TTT-CTTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTCCTTC
* * * *
784088 TTCTCTTTTGTCCTCAAAGGGTAGGACACACTTTATTTCCTTT-
123 TTTTCCTTTGTCCTCAAAGAGTAGGACGCACTTTATTT-CTTTC
* * * * *
784131 TTTCCTTTGTCCTCGAAGAGTAGGATG---C-A-TT-C-TTTTTCCCTTTATCTTCAAAGAGTAG
1 TTTCCTTTGTCCTCAAAGAGTAGGACGCACCTATTTCCTTTTTTTCCTTTGTCCTCAAAGAGTAG
* * * * ** * **
784189 GATG-C-ATTC-TTTTTCCCTTTGTCCTCAAAGAGCAAGATGCATTTTATTT-CTT-TTTCTTTT
66 GATGCCTTTTCTTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTCCTTCTTT-TCCT
784249 TTGTCCTCAAAGAGTAGGACGCAC
130 TTGTCCTCAAAGAGTAGGACGCAC
784273 CTCATTTTCT
Statistics
Matches: 391, Mismatches: 68, Indels: 48
0.77 0.13 0.09
Matches are distributed among these distances:
153 2 0.01
154 31 0.08
155 27 0.07
156 2 0.01
160 1 0.00
162 32 0.08
164 32 0.08
165 34 0.09
166 29 0.07
167 59 0.15
168 108 0.28
169 32 0.08
170 2 0.01
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (165 bp):
TTTCCTTTGTCCTCAAAGAGTAGGACGCACCTATTTCCTTTTTTTCCTTTGTCCTCAAAGAGTAG
GATGCCTTTTCTTTTTTTCCTTTGTCCTCAAAGAGTAGGACACATTTCATTTCCTTCTTTTCCTT
TGTCCTCAAAGAGTAGGACGCACTTTATTTCTTTC
Found at i:784061 original size:291 final size:290
Alignment explanation
Indices: 783622--784154 Score: 745
Period size: 291 Copynumber: 1.8 Consensus size: 290
783612 CTTTCCTTAT
* **
783622 TTTCCTTTTTCCTCTATCCTCAAAGAGTAGGGCGCACCTCATTTTCTTTTTTTCCCTTAGTCCTC
1 TTTCCTTTTTCCTCTATCCTCAAAGAGTAGGGCGCACCTCATTTCCTACTTTTCCCTTAGTCCTC
** * *
783687 AAAGAGCAGGATGCCTTTTCCTTTTTTCCTTTGTCCTTAAAGAGTAGGACACATTTCATTTCCTT
66 AAAGAGCAGGACACCTTTTCCTTTTTTCCTTTATCCTCAAAGAGTAGGACACATTTCATTTCCTT
* ** *
783752 CTTTTCCCTTTGTCCTCAAAGAGCAGGATGCACTTTATTTCTTTC-TCTCCTTTGTCCTCAAAGA
131 CTTTT-CCTTTATCCTCAAAGAGCAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCTCAAAGA
*
783816 GTAGGACGCACTTAATTTCCTTCTTTTCCTTTGTCCTCAAAGAGTAGGGTGCCTTTTCTTTTTTT
195 GTAGGACACACTTAATTTCCTT-TTTTCCTTTGTCCTCAAAGAGTAGGGTGCCTTTTCTTTTTTT
783881 TCCTTTGTCCTCAAAGAGCAGGGCGCATTTTA
259 TCCTTTGTCCTCAAAGAGCAGGGCGCATTTTA
* * * *
783913 TTTCCTTTTTCCTTTATCCTCAAAGAGTAGGGCGCACTTCATTTCCTACTTTT-CTTTTGTCCTC
1 TTTCCTTTTTCCTCTATCCTCAAAGAGTAGGGCGCACCTCATTTCCTACTTTTCCCTTAGTCCTC
* *
783977 AAAGAGTAGGACACCTTTTCCTTTTTTTTTCCTTTATCCTCAAAGAGTAGTATGCACA-TT-ATT
66 AAAGAGCAGGACACCTTTTCC---TTTTTTCCTTTATCCTCAAAGAGTAGGA--CACATTTCATT
* *
784040 TCCTT-TTCTT-CTTTATCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCTTTTGTCCTC
126 TCCTTCTT-TTCCTTTATCCTCAAAGAGCAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCTC
* * *
784103 AAAGGGTAGGACACACTTTATTTCCTTTTTTCCTTTGTCCTCGAAGAGTAGG
190 AAAGAGTAGGACACACTTAATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGG
784155 ATGCATTCTT
Statistics
Matches: 212, Mismatches: 23, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
290 27 0.13
291 105 0.50
292 39 0.18
293 35 0.17
294 2 0.01
295 4 0.02
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42
Consensus pattern (290 bp):
TTTCCTTTTTCCTCTATCCTCAAAGAGTAGGGCGCACCTCATTTCCTACTTTTCCCTTAGTCCTC
AAAGAGCAGGACACCTTTTCCTTTTTTCCTTTATCCTCAAAGAGTAGGACACATTTCATTTCCTT
CTTTTCCTTTATCCTCAAAGAGCAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCTCAAAGAG
TAGGACACACTTAATTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGGTGCCTTTTCTTTTTTTTC
CTTTGTCCTCAAAGAGCAGGGCGCATTTTA
Found at i:784129 original size:85 final size:85
Alignment explanation
Indices: 783622--784272 Score: 497
Period size: 82 Copynumber: 8.0 Consensus size: 85
783612 CTTTCCTTAT
* * * * * * *
783622 TTTCC-TTTTTCCTCTATCCTCAAAGAGTAGGGCGCACCTCATTTTCTTT-TTTTCCCTTAGTCC
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCA-TTTCTTTCTTCT-CCTTTGTCC
*
783685 TCAAAGAGCAGGATGC-C--T-
64 TCAAAGAGTAGGATGCACTTTA
* * * *
783703 TTTCCTTTTTTCCTTTGTCCTTAAAGAGTAGGACACATTTCATTTCCTTCTTTTCCCTTTGTCCT
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCT-CCTTTGTCCT
*
783768 CAAAGAGCAGGATGCACTTTA
65 CAAAGAGTAGGATGCACTTTA
* * * * *
783789 TTT-CTTTCTCTCCTTTGTCCTCAAAGAGTAGGACGCACTTAATTTCCTTCTTTTCCTTTGTCCT
1 TTTCCTTT-TTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCT
*
783853 CAAAGAGTAGGGTGC-CTTT-
65 CAAAGAGTAGGATGCACTTTA
* * * * * * *
783872 TCTT--TTTTTTCCTTTGTCCTCAAAGAGCAGGGCGCATTTTATTTCCTT-TT-TCCTTTATCCT
1 T-TTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCT
** *
783933 CAAAGAGTAGGGCGCACTTCA
65 CAAAGAGTAGGATGCACTTTA
* * * *
783954 TTTCCTACTTTTCTTTTGTCCTCAAAGAGTAGGACAC-CTTTTCCTTT-TTT-TT-TCCTTTATC
1 TTTCCT-TTTTTCCTTTGTCCTCAAAGAGTAGGACACAC--TTCATTTCTTTCTTCTCCTTTGTC
* *
784015 CTCAAAGAGTAGTATGCACATTA
63 CTCAAAGAGTAGGATGCACTTTA
* *
784038 TTTCCTTTTCTT-CTTTATCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCTTTTGTCCT
1 TTTCCTTTT-TTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCT
* **
784102 CAAAGGGTAGGACACACTTTA
65 CAAAGAGTAGGATGCACTTTA
* * * *
784123 TTTCCTTTTTTCCTTTGTCCTCGAAGAGTAGG----A-TGCA-TTCTTT-TTC-CCTTTATCTTC
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCTC
784180 AAAGAGTAGGATG--C---A
66 AAAGAGTAGGATGCACTTTA
* * * ** * * **
784195 -TT-CTTTTTCCCTTTGTCCTCAAAGAGCAAGATGCATTTTATTTCTTT-TTCTTTTTTGTCCTC
1 TTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCTC
*
784257 AAAGAGTAGGACGCAC
66 AAAGAGTAGGATGCAC
784273 CTCATTTTCT
Statistics
Matches: 471, Mismatches: 69, Indels: 62
0.78 0.11 0.10
Matches are distributed among these distances:
70 24 0.05
71 2 0.00
72 1 0.00
74 1 0.00
75 3 0.01
76 9 0.02
77 37 0.08
78 3 0.01
79 7 0.01
80 27 0.06
81 19 0.04
82 101 0.21
83 33 0.07
84 75 0.16
85 85 0.18
86 44 0.09
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (85 bp):
TTTCCTTTTTTCCTTTGTCCTCAAAGAGTAGGACACACTTCATTTCTTTCTTCTCCTTTGTCCTC
AAAGAGTAGGATGCACTTTA
Found at i:784173 original size:35 final size:35
Alignment explanation
Indices: 784127--784320 Score: 160
Period size: 35 Copynumber: 5.4 Consensus size: 35
784117 ACTTTATTTC
* *
784127 CTTTTTTCCTTTGTCCTCGAAGAGTAGGATGCATT
1 CTTTTTCCCTTTGTCCTCAAAGAGTAGGATGCATT
* *
784162 CTTTTTCCCTTTATCTTCAAAGAGTAGGATGCATT
1 CTTTTTCCCTTTGTCCTCAAAGAGTAGGATGCATT
* *
784197 CTTTTTCCCTTTGTCCTCAAAGAGCAAGATGCATTTTATTT
1 CTTTTTCCCTTTGTCCTCAAAGAGTAGGATGC-----A-TT
** * *
784238 CTTTTTCTTTTTTGTCCTCAAAGAGTAGGACGCACCT
1 CTTTTTC-CCTTTGTCCTCAAAGAGTAGGATGCA-TT
* * * *
784275 CATTTT--CTTCT-TCCTCGAAGAGAAGGATGCACT
1 CTTTTTCCCTT-TGTCCTCAAAGAGTAGGATGCATT
784308 CTTTTTCCCTTTG
1 CTTTTTCCCTTTG
784321 CCCACAAGAA
Statistics
Matches: 127, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
33 7 0.06
34 20 0.16
35 63 0.50
37 7 0.06
40 1 0.01
41 9 0.07
42 20 0.16
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (35 bp):
CTTTTTCCCTTTGTCCTCAAAGAGTAGGATGCATT
Found at i:785100 original size:50 final size:50
Alignment explanation
Indices: 785042--785206 Score: 242
Period size: 50 Copynumber: 3.3 Consensus size: 50
785032 TTCCACAATT
* *
785042 TGTATCGATACATTCTTCATTATATCGATACATTCTGGGTTTTACCTATA
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTACCTATA
785092 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTACCTAGT-
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTACCTA-TA
* * * * * *
785142 TGTATCAATATATTTTTCATTGTATCGATACATTATGGGTGTTACCGAGA
1 TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTACCTATA
785192 TGTATCGATACATTT
1 TGTATCGATACATTT
785207 AGGCTTTTTT
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
50 102 0.99
51 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.44
Consensus pattern (50 bp):
TGTATCGATACATTTTTCATTGTATCGATACATTCTGGGTTTTACCTATA
Found at i:787710 original size:79 final size:79
Alignment explanation
Indices: 787596--788143 Score: 522
Period size: 79 Copynumber: 6.9 Consensus size: 79
787586 CTAAAATATT
* * * * *
787596 GATTTTCCACATTTGGGGATACTCCCACCCCATTATTTTCGAGGAGATACTCTAACCTC-AGTTT
1 GATTTTCCACAATCGAGGATACTCCAACCCCATTATTTTCGAGGGGATACTCTAACCTCGA-TTT
*
787660 TATTTTCAAAACACC
65 TATTTCCAAAACACC
* * * * * * *
787675 AATTTTCCACCATCGAGGATGCTCCAACCCTATTATTTTTGAGGAGATACT-TCAACCCCGATTT
1 GATTTTCCACAATCGAGGATACTCCAACCCCATTATTTTCGAGGGGATACTCT-AACCTCGATTT
*
787739 TATTTCCAAAACACT
65 TATTTCCAAAACACC
* * * * * * *
787754 GATTTTCCACAATCGGGGATACTCCAATCTCGA-AATTTTTGAGGGGATACTCCAA-CTCTGGTT
1 GATTTTCCACAATCGAGGATACTCCAA-CCCCATTATTTTCGAGGGGATACTCTAACCTC-GATT
* * **
787817 TTATTTCTAAAATATT
64 TTATTTCCAAAACACC
* * * * *
787833 GATTTTTCACCATC-AGGGATACTCTAACCCTATTA-TTTCTGAGAGGATACTCTAACCTCGATT
1 GATTTTCCACAATCGA-GGATACTCCAACCCCATTATTTTC-GAGGGGATACTCTAACCTCGATT
* *
787896 TCATTTCCAAAACATC
64 TTATTTCCAAAACACC
* *
787912 GATTTTTCACAATCGAGGATACTCCAACCCCATTA-TTTCTGAGGGGATACTCCAACCTCGATTT
1 GATTTTCCACAATCGAGGATACTCCAACCCCATTATTTTC-GAGGGGATACTCTAACCTCGATTT
*
787976 TATTTCCAAAACATC
65 TATTTCCAAAACACC
* * * *
787991 GATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAACC-CGATTT
1 GATTTTCCACAATCGAGGATACTCCAACCCCATTATTTTCGAGGGGATACT-CTAACCTCGATTT
* *
788055 TATTTCTAAAGCACC
65 TATTTCCAAAACACC
* * * * *
788070 GATTTTCCACAATC-CGGATACTCCAACCCCGTTA-TTTCTAAGGGGATACTCTAACCCCGTTTT
1 GATTTTCCACAATCGAGGATACTCCAACCCCATTATTTTC-GAGGGGATACTCTAACCTCGATTT
*
788133 TATCTCCAAAA
65 TATTTCCAAAA
788144 TATTAAACTT
Statistics
Matches: 393, Mismatches: 62, Indels: 29
0.81 0.13 0.06
Matches are distributed among these distances:
77 9 0.02
78 51 0.13
79 316 0.80
80 17 0.04
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (79 bp):
GATTTTCCACAATCGAGGATACTCCAACCCCATTATTTTCGAGGGGATACTCTAACCTCGATTTT
ATTTCCAAAACACC
Found at i:788013 original size:237 final size:235
Alignment explanation
Indices: 787578--788143 Score: 658
Period size: 237 Copynumber: 2.4 Consensus size: 235
787568 AAACACCGAT
* *
787578 GTTTT-TTTCTAAAATATTGATTTTCCA-CATTTGGGGATACTCCCACCCCATTATTT-TCGAGG
1 GTTTTATTTCTAAAATATTGATTTTCCACCA--TCGGGATACTCCAACCCCATTATTTCT-GAGG
* * *
787640 AGATACTCTAACCTC-AGTTTTATTTTCAAAACACCAATTTTCCACCATCGAGGATGCTCCAACC
63 -GATACTCTAACCTCGA-TTTTATTTCCAAAACACCAATTTTCCACAATCGAGGATACTCCAACC
* * *
787704 CTATTATTTTTGAGGAGATACTTCAACCCCGATTTTATTTCCAAAACACTGATTTTCCACAATCG
126 CCATTATTTCTGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTCCACAATCG
* * * * *
787769 GGGATACTCCAATCTCGAAATTTTTGAGGGGATACTCC-AACTCTG
191 AGGATACTCCAACCCCGAAATTTTCGAGGGGATACTCCAAAC-CCG
* * *
787814 GTTTTATTTCTAAAATATTGATTTTTCACCATCAGGGATACTCTAACCCTATTATTTCTGAGAGG
1 GTTTTATTTCTAAAATATTGATTTTCCACCATC-GGGATACTCCAACCCCATTATTTCTGAG-GG
* * * *
787879 ATACTCTAACCTCGATTTCATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCA
64 ATACTCTAACCTCGATTTTATTTCCAAAACACCAATTTTCCACAATCGAGGATACTCCAACCCCA
* * * *
787944 TTATTTCTGAGGGGATACTCCAACCTCGATTTTATTTCCAAAACA-TCGATTTTTCATAATCGAG
129 TTATTTCTGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACACT-GATTTTCCACAATCGAG
**
788008 GATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAACCCG
193 GATACTCCAACCCCGAAATTTTCGAGGGGATACTCCAAACCCG
* ** ** * * * *
788051 ATTTTATTTCTAAAGCACCGATTTTCCACAATCCGGATACTCCAACCCCGTTATTTCTAAGGGGA
1 GTTTTATTTCTAAAATATTGATTTTCCACCATCGGGATACTCCAACCCCATTATTTCTGA-GGGA
* * *
788116 TACTCTAACCCCGTTTTTATCTCCAAAA
65 TACTCTAACCTCGATTTTATTTCCAAAA
788144 TATTAAACTT
Statistics
Matches: 279, Mismatches: 42, Indels: 18
0.82 0.12 0.05
Matches are distributed among these distances:
236 56 0.20
237 215 0.77
238 8 0.03
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (235 bp):
GTTTTATTTCTAAAATATTGATTTTCCACCATCGGGATACTCCAACCCCATTATTTCTGAGGGAT
ACTCTAACCTCGATTTTATTTCCAAAACACCAATTTTCCACAATCGAGGATACTCCAACCCCATT
ATTTCTGAGGAGATACTCCAACCCCGATTTTATTTCCAAAACACTGATTTTCCACAATCGAGGAT
ACTCCAACCCCGAAATTTTCGAGGGGATACTCCAAACCCG
Found at i:794463 original size:50 final size:51
Alignment explanation
Indices: 794361--794474 Score: 176
Period size: 51 Copynumber: 2.3 Consensus size: 51
794351 AATTAACTAG
* * *
794361 ATGTATCGATACATTGAAAAATGTATCTATACATCTGGGTAAAAAAATAGA
1 ATGTATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAAAACAGA
*
794412 ATGTATCGATACATTAAAAAATGTATCGATACATCTGGGT-GAAAAACAGA
1 ATGTATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAAAACAGA
*
794462 ATGTATCAATACA
1 ATGTATCGATACA
794475 CGTACTATTC
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
50 20 0.34
51 38 0.66
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.28
Consensus pattern (51 bp):
ATGTATCGATACATTAAAAAATGTATCGATACATCTGGGTAAAAAAACAGA
Found at i:795301 original size:52 final size:52
Alignment explanation
Indices: 795216--795323 Score: 135
Period size: 52 Copynumber: 2.1 Consensus size: 52
795206 GATGCGAAGA
* * * * * * *
795216 ATGATAAAAGTGCTAATATGTTGATTTAAGGCCAACGATATTGGACTTAAAG
1 ATGACAAAAGTGCAAATATGCTGATCTAAGGCCAACAACATTAGACTTAAAG
* *
795268 ATGACAAAAGTGCAAATGTGCTGATCTAAGGCCAACAACATTATACTTAAAG
1 ATGACAAAAGTGCAAATATGCTGATCTAAGGCCAACAACATTAGACTTAAAG
795320 ATGA
1 ATGA
795324 GAAGAATGAT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (52 bp):
ATGACAAAAGTGCAAATATGCTGATCTAAGGCCAACAACATTAGACTTAAAG
Found at i:795370 original size:113 final size:113
Alignment explanation
Indices: 795163--795388 Score: 276
Period size: 113 Copynumber: 2.0 Consensus size: 113
795153 GGGTAAGAAG
* ** * * *
795163 AGTGCCAATGTGCTGATTCAAGTTCAACAACATTGGACTTAAGGATGCGAAGAATGATAAAAGTG
1 AGTGCAAATGTGCTGATTCAAGGCCAACAACATTAGACTTAAAGATGAGAAGAATGATAAAAGTG
* * * * * * *
795228 CTAATATGTTGATTTAAGGCCAACGATATTGGACTTAAAGATGACAAA
66 CCAACATGCTGATTCAAAGCCAACAATATTAGACTTAAAGATGACAAA
* *
795276 AGTGCAAATGTGCTGA-TCTAAGGCCAACAACATTATACTTAAAGATGAGAAGAATGATAAAGGT
1 AGTGCAAATGTGCTGATTC-AAGGCCAACAACATTAGACTTAAAGATGAGAAGAATGATAAAAGT
*
795340 GCCGACATGCTGATTCAAAGCC-ACTAATATTAGACTTAAAGATGACAAA
65 GCCAACATGCTGATTCAAAGCCAAC-AATATTAGACTTAAAGATGACAAA
795389 GGCGCTAGCA
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
112 4 0.04
113 91 0.96
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (113 bp):
AGTGCAAATGTGCTGATTCAAGGCCAACAACATTAGACTTAAAGATGAGAAGAATGATAAAAGTG
CCAACATGCTGATTCAAAGCCAACAATATTAGACTTAAAGATGACAAA
Found at i:795423 original size:113 final size:113
Alignment explanation
Indices: 795187--795412 Score: 256
Period size: 113 Copynumber: 2.0 Consensus size: 113
795177 GATTCAAGTT
** * * * * * * *
795187 CAACAACATTGGACTTAAGGATGCGAAGAATGATAAAAGTGCTAATATGTTGATTTAAGGCCAAC
1 CAACAACATTATACTTAAAGATGAGAAGAATGATAAAAGTGCCAACATGCTGATTCAAAGCCAAC
* * * **
795252 GATATTGGACTTAAAGATGACAAAAGTGCAAATGTGCTGATCTAAGGC
66 AATATTAGACTTAAAGATGACAAAAGCGCAAACATGCTGATCTAAGGC
* *
795300 CAACAACATTATACTTAAAGATGAGAAGAATGATAAAGGTGCCGACATGCTGATTCAAAGCC-AC
1 CAACAACATTATACTTAAAGATGAGAAGAATGATAAAAGTGCCAACATGCTGATTCAAAGCCAAC
* * * *
795364 TAATATTAGACTTAAAGATGACAAAGGCGCTAGCATGCTGATTTAAGGC
66 -AATATTAGACTTAAAGATGACAAAAGCGCAAACATGCTGATCTAAGGC
795413 TAGCGACATT
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
112 2 0.02
113 90 0.98
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (113 bp):
CAACAACATTATACTTAAAGATGAGAAGAATGATAAAAGTGCCAACATGCTGATTCAAAGCCAAC
AATATTAGACTTAAAGATGACAAAAGCGCAAACATGCTGATCTAAGGC
Found at i:795770 original size:95 final size:95
Alignment explanation
Indices: 795438--795878 Score: 478
Period size: 95 Copynumber: 4.6 Consensus size: 95
795428 TAGAAGGAGA
* * * * * *
795438 TGCCACC-ACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAGTTTGTGTGGGTTTTGAAAAGGGT
1 TGCCACCAACTTGTGTGGGCTTTA-AAAAGGGTTGCCACCAGCTTGTGTGGGCTTT-AGAGGGGG
* * *
795502 TGCCACCAACTTGTGTGGGTTTTAGAAAAGGG
64 TGCCACCAACTTGTGTGGGCTTTAGAAGAGGT
* *
795534 TGCCACGAACTTGTGTGGGCTTTAGAAAA-GGTTGCCACCAGCTTGTGTGGGCTTTAGAGAGGGA
1 TGCCACCAACTTGTGTGGGCTTTA-AAAAGGGTTGCCACCAGCTTGTGTGGGCTTTAGAG-GGGG
* * * * *
795598 TACTACCAACTTGTGTAGGCATTGGAAGAGGT
64 TGCCACCAACTTGTGTGGGCTTTAGAAGAGGT
* * * *
795630 TGTCACCAGCTTGCGTGGGCTTT-AGAAGAGGTTGCCACCAGCTTGTGTGGGCTTTAGAGGGGGT
1 TGCCACCAACTTGTGTGGGCTTTAAAAAG-GGTTGCCACCAGCTTGTGTGGGCTTTAGAGGGGGT
* * * *
795694 CCCACCTATTTATGTGGGCTTTAGAAGAGGT
65 GCCACCAACTTGTGTGGGCTTTAGAAGAGGT
* * * **
795725 TGCCACCAACTTGTGTAGGCTTTAAAAAGGGTTGCCATC-GACTTGTGTGGACTTTAGAGAAGGT
1 TGCCACCAACTTGTGTGGGCTTTAAAAAGGGTTGCCACCAG-CTTGTGTGGGCTTTAGAGGGGGT
*
795789 GCCACCGACTTGTGTGGGCTTTAGAAGAGGT
65 GCCACCAACTTGTGTGGGCTTTAGAAGAGGT
* ** *
795820 TGCCACCAGCTTGTGTAAGCTTTAAAAAGGGTTGCCACC-GACTTTTGTGGGCTTTAGAG
1 TGCCACCAACTTGTGTGGGCTTTAAAAAGGGTTGCCACCAG-CTTGTGTGGGCTTTAGAG
795879 AAAAGTTGGC
Statistics
Matches: 292, Mismatches: 47, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
94 4 0.01
95 158 0.54
96 110 0.38
97 20 0.07
ACGTcount: A:0.22, C:0.18, G:0.32, T:0.29
Consensus pattern (95 bp):
TGCCACCAACTTGTGTGGGCTTTAAAAAGGGTTGCCACCAGCTTGTGTGGGCTTTAGAGGGGGTG
CCACCAACTTGTGTGGGCTTTAGAAGAGGT
Found at i:795939 original size:28 final size:28
Alignment explanation
Indices: 795898--796249 Score: 386
Period size: 28 Copynumber: 12.4 Consensus size: 28
795888 CATCGATTTG
* *
795898 TGTGGGCTTGAAAAGGATGCCGCTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
*
795926 TGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* *
795954 TGTGGGCTTTGAAAAGG-TACCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
*
795982 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
*
796010 TGTGGGCTTTGAAAAGGGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
** * *
796039 TGTGGGCTTTGGAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * *
796067 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
*
796095 TGTGGGCTTTGAAAA-TAGTGCCACTGACT
1 TGTGGGCTTT-AAAAGGA-TGCCACTGACT
** *
796124 TGTGGGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
*
796152 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTGACT
* * * *
796180 TGTGTGCTTTGAAAAGGGTACCATTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
* *
796209 TGTGGGCTTTGGAAGGGA-GCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTGACT
796237 TGTGTGGACTTTA
1 TGTG-GG-CTTTA
796250 GAAGAGGTTG
Statistics
Matches: 278, Mismatches: 37, Indels: 17
0.84 0.11 0.05
Matches are distributed among these distances:
27 5 0.02
28 184 0.66
29 85 0.31
30 4 0.01
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTGACT
Found at i:795968 original size:57 final size:57
Alignment explanation
Indices: 795898--796389 Score: 463
Period size: 57 Copynumber: 8.4 Consensus size: 57
795888 CATCGATTTG
* * * *
795898 TGTGGGC-TTGAAAAGGATGCCGCTGACTTGTGGGCTTTAAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* *
795954 TGTGGGCTTTGAAAA-GGTACCACTAACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * *
796010 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGGAAGGGTGCCACTAACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * **
796067 TATGGGCTTTG-AAAGGATGCCACTAACTTGTGGGCTTTGAAAATAGTGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTGACT
*
796124 TGTGGGCTTTG-GAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
796180 TGTGTGCTTTGAAAAGGGTACCATTGACTTGTGGGCTTTGGAAGGGA-GCCACTGACT
1 TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTT-GAAAGGATGCCACTGACT
* * * * ** ** * * *
796237 TGTGTGGACTTTAGAAGAGGTTGCCGCCAGTTTGTGTGGGCTCCCGAAAAAAAGATGCTACCGAC
1 TGTG-GG-CTTT-GAAAAGGGTGCC-ACTGACT-TGTGGGCT-TTG---AAAGGATGCCACTGAC
796302 TT
57 -T
* * * * * *
796304 GTGTGGGCTTTGAAGGAGGTTGCCACCGACTTGTGTAGGCTTTAGATAGGGTGCCACTGATT
1 -TGTGGGCTTTGAA-AAGGGTGCCACTGACTTGTG--GGCTTT-GAAAGGATGCCACTGACT
*
796366 TGTGGGCTTTAAAAAGGGTGCCAC
1 TGTGGGCTTTGAAAAGGGTGCCAC
796390 GTAGTTGTAG
Statistics
Matches: 355, Mismatches: 60, Indels: 38
0.78 0.13 0.08
Matches are distributed among these distances:
56 106 0.30
57 140 0.39
58 7 0.02
59 4 0.01
60 18 0.05
61 14 0.04
62 10 0.03
63 10 0.03
64 4 0.01
65 10 0.03
66 25 0.07
67 3 0.01
68 4 0.01
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.28
Consensus pattern (57 bp):
TGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:796048 original size:85 final size:85
Alignment explanation
Indices: 795898--796240 Score: 519
Period size: 85 Copynumber: 4.0 Consensus size: 85
795888 CATCGATTTG
* * *
795898 TGTGGGC-TTGAAAAGGATGCCGCTGACTTGTGGGCTTT-AAAAGGATGCCACTAACTTGTGGGC
1 TGTGGGCTTTG-AAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGC
* * *
795961 TTTGAAAAGGTACCACTAACT
65 TTTGGAAGGGTGCCACTAACT
795982 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCT
796047 TTGGAAGGGTGCCACTAACT
66 TTGGAAGGGTGCCACTAACT
* * **
796067 TATGGGCTTTGAAAGGATGCCACTAACTTGTGGGCTTTGAAAATAGTGCCACTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCT
*
796132 TTGGAAGGGTGCCACTGACT
66 TTGGAAGGGTGCCACTAACT
* * *
796152 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGTGCTTTGAAAAGGGTACCATTGACTTGTGGGCT
1 TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCT
* *
796217 TTGGAAGGGAGCCACTGACT
66 TTGGAAGGGTGCCACTAACT
796237 TGTG
1 TGTG
796241 TGGACTTTAG
Statistics
Matches: 238, Mismatches: 19, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
84 33 0.14
85 205 0.86
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (85 bp):
TGTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGGGTGCCACTGACTTGTGGGCT
TTGGAAGGGTGCCACTAACT
Found at i:796337 original size:32 final size:31
Alignment explanation
Indices: 795438--796389 Score: 482
Period size: 32 Copynumber: 31.2 Consensus size: 31
795428 TAGAAGGAGA
*
795438 TGCCACC-ACTTGTGTGGGCTTTAGAGAAGGGT
1 TGCCACCGACTTGTGTGGGCTTT-GA-AAAGGT
* *
795470 TGCCACC-AGTTTGTGTGGGTTTTGAAAAGGGT
1 TGCCACCGA-CTTGTGTGGGCTTTGAAAA-GGT
* * *
795502 TGCCACCAACTTGTGTGGGTTTTAGAAAAGGG
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAGGT
795534 TGCCA-CGAACTTGTGTGGGCTTTAGAAAAGGT
1 TGCCACCG-ACTTGTGTGGGCTTT-GAAAAGGT
* * *
795566 TGCCACC-AGCTTGTGTGGGCTTTAGAGAGGGA
1 TGCCACCGA-CTTGTGTGGGCTTT-GAAAAGGT
* * * * * *
795598 TACTACCAACTTGTGTAGGCATTGGAAGAGGT
1 TGCCACCGACTTGTGTGGGC-TTTGAAAAGGT
* * *
795630 TGTCACC-AGCTTGCGTGGGCTTTAGAAGAGGT
1 TGCCACCGA-CTTGTGTGGGCTTT-GAAAAGGT
** *
795662 TGCCACC-AGCTTGTGTGGGCTTT-AGAGGGGG
1 TGCCACCGA-CTTGTGTGGGCTTTGA-AAAGGT
* * * * *
795693 TCCCACCTATTTATGTGGGCTTTAGAAGAGGT
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAGGT
* * *
795725 TGCCACCAACTTGTGTAGGCTTTAAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTGAAAA-GGT
* * *
795757 TGCCATCGACTTGTGTGGACTTTAGAGAAGG-
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAGGT
*
795788 TGCCACCGACTTGTGTGGGCTTTAGAAGAGGT
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAGGT
** *
795820 TGCCACC-AGCTTGTGTAAGCTTTAAAAAGGGT
1 TGCCACCGA-CTTGTGTGGGCTTTGAAAA-GGT
* *
795852 TGCCACCGACTTTTGTGGGCTTTAGAGAAAAGT
1 TGCCACCGACTTGTGTGGGCTTT-GA-AAAGGT
* * * *
795885 TGGCATCGATTTGTGTGGGC-TTGAAAAGGA
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* * *
795915 TGCCGCTGAC-T-TGTGGGCTTT-AAAAGGA
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
**
795943 TGCCACTAAC-T-TGTGGGCTTTGAAAAGG-
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* ** *
795971 TACCACTAAC-T-TGTGGGCTTTG-AAAGGA
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* *
795999 TGCCACTGAC-T-TGTGGGCTTTGAAAAGGG
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* * *
796028 TGCCACTGAC-T-TGTGGGCTTTG-GAAGGG
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
** * *
796056 TGCCACTAAC-T-TATGGGCTTTG-AAAGGA
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
** *
796084 TGCCACTAAC-T-TGTGGGCTTTGAAAATAG-
1 TGCCACCGACTTGTGTGGGCTTTGAAAA-GGT
* * *
796113 TGCCACTGAC-T-TGTGGGCTTTG-GAAGGG
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* *
796141 TGCCACTGAC-T-TGTGGGCTTTG-AAAGGA
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* *
796169 TGCCACTGACTTGTGT--GCTTTGAAAAGGG
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* ** * *
796198 TACCATTGAC-T-TGTGGGCTTTG-GAAGGG
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
* * * *
796226 AGCCACTGACTTGTGTGGACTTTAGAAGAGGT
1 TGCCACCGACTTGTGTGGGCTTT-GAAAAGGT
* * ** * *
796258 TGCCGCC-AGTTTGTGTGGGCTCCCGAAAAAAAGA
1 TGCCACCGA-CTTGTGTGGGCT-TTG--AAAAGGT
* *
796292 TGCTACCGACTTGTGTGGGCTTTGAAGGAGGT
1 TGCCACCGACTTGTGTGGGCTTTGAA-AAGGT
* * *
796324 TGCCACCGACTTGTGTAGGCTTT-AGATAGGG
1 TGCCACCGACTTGTGTGGGCTTTGA-AAAGGT
* * *
796355 TGCCACTGA-TT-TGTGGGCTTTAAAAAGGG
1 TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
796384 TGCCAC
1 TGCCAC
796390 GTAGTTGTAG
Statistics
Matches: 748, Mismatches: 125, Indels: 97
0.77 0.13 0.10
Matches are distributed among these distances:
27 9 0.01
28 181 0.24
29 101 0.14
30 26 0.03
31 81 0.11
32 279 0.37
33 47 0.06
34 23 0.03
35 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.32, T:0.29
Consensus pattern (31 bp):
TGCCACCGACTTGTGTGGGCTTTGAAAAGGT
Found at i:796369 original size:31 final size:29
Alignment explanation
Indices: 796296--796547 Score: 87
Period size: 27 Copynumber: 8.9 Consensus size: 29
796286 AAAAGATGCT
** *
796296 ACCGACTTGTGTGGGCTTTGAAGGAGGTTGCC
1 ACCGAC-T-TGTGGGCTTT-AAAAAGGGTGCC
* *
796328 ACCGACTTGTGTAGGCTTTAGATAGGGTGCC
1 ACCGACTTGTG--GGCTTTAAAAAGGGTGCC
* *
796359 ACTGATTTGTGGGCTTTAAAAAGGGTGCC
1 ACCGACTTGTGGGCTTTAAAAAGGGTGCC
* * * *
796388 A-CGTAGTTGTAGAC-TT-AAAATGGTGCC
1 ACCG-ACTTGTGGGCTTTAAAAAGGGTGCC
* * * *
796415 ACAGAGTTATGGAC-TTAAAAA-GGTGCC
1 ACCGACTTGTGGGCTTTAAAAAGGGTGCC
** * * *
796442 ACAAAGTTGTGGAC-TT-AAAAGGATGCC
1 ACCGACTTGTGGGCTTTAAAAAGGGTGCC
* * * *
796469 ACGGAGTTGTAGAC-TTAAAAA-GGTGCC
1 ACCGACTTGTGGGCTTTAAAAAGGGTGCC
* *
796496 ACGGAGTTGTGGAG-TTT-AAAAGGGTGCC
1 ACCGACTTGTGG-GCTTTAAAAAGGGTGCC
** * *
796524 ATGGAGTTGTGGAC-TTAAAAAGGG
1 ACCGACTTGTGGGCTTTAAAAAGGG
796548 AAGGTGCCAT
Statistics
Matches: 181, Mismatches: 27, Indels: 28
0.77 0.11 0.12
Matches are distributed among these distances:
26 4 0.02
27 81 0.45
28 38 0.21
29 24 0.13
30 4 0.02
31 18 0.10
32 12 0.07
ACGTcount: A:0.28, C:0.14, G:0.32, T:0.26
Consensus pattern (29 bp):
ACCGACTTGTGGGCTTTAAAAAGGGTGCC
Found at i:796415 original size:27 final size:27
Alignment explanation
Indices: 796353--796736 Score: 239
Period size: 27 Copynumber: 12.8 Consensus size: 27
796343 CTTTAGATAG
* * *
796353 GGTGCCACTGATTTGTGGGCTTTAAAAA
1 GGTGCCACGGAGTTGTGGAC-TTAAAAA
* * *
796381 GGGTGCCACGTAGTTGTAGACTTAAAAT
1 -GGTGCCACGGAGTTGTGGACTTAAAAA
* *
796409 GGTGCCACAGAGTTATGGACTTAAAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAA
**
796436 GGTGCCACAAAGTTGTGGACTT-AAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAA
*
796462 GGATGCCACGGAGTTGTAGACTTAAAAA
1 GG-TGCCACGGAGTTGTGGACTTAAAAA
* *
796490 GGTGCCACGGAGTTGTGGAGTTTAAAAG
1 GGTGCCACGGAGTTGTGGA-CTTAAAAA
*
796518 GGTGCCATGGAGTTGTGGACTTAAAAAGGGAA
1 GGTGCCACGGAGTTGTGGACTT--AAA---AA
* *
796550 GGTGCCATGGAATTGTGGACTTTAACAGGAAAA
1 GGTGCCACGGAGTTGTGGAC-TT---A--AAAA
*
796583 GGTTGCCACGAAGTTGTGGACTTAAAAA
1 GG-TGCCACGGAGTTGTGGACTTAAAAA
*
796611 GGGAAGTGCCACAGAGTTGTGGACTTTAACAGAAAAA
1 --G--GTGCCACGGAGTTGTGGAC-TT-----AAAAA
*
796648 GGTTGCCATGGAGTTGTGGACTTAAAAAGGGAA
1 GG-TGCCACGGAGTTGTGGACTT--AAA---AA
796681 GGTGCCACGGAGTTGTGGACTTCAATAGAAAAA
1 GGTGCCACGGAGTTGTGGAC-T---T--AAAAA
796714 GGTTGCCACGGAGTTGTGGACTT
1 GG-TGCCACGGAGTTGTGGACTT
796737 TGAAAAGAAA
Statistics
Matches: 289, Mismatches: 34, Indels: 63
0.75 0.09 0.16
Matches are distributed among these distances:
26 6 0.02
27 77 0.27
28 40 0.14
29 18 0.06
30 7 0.02
31 16 0.06
32 40 0.14
33 21 0.07
34 51 0.18
35 1 0.00
36 7 0.02
37 5 0.02
ACGTcount: A:0.31, C:0.13, G:0.32, T:0.24
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTAAAAA
Found at i:796720 original size:66 final size:66
Alignment explanation
Indices: 796458--796736 Score: 357
Period size: 66 Copynumber: 4.4 Consensus size: 66
796448 TTGTGGACTT
* * *
796458 AAAAGGATGCCACGGAGTTGTAGACTT--AAA---AAGGTGCCACGGAGTTGTGGAGTTT-----
1 AAAAGGTTGCCACGGAGTTGTGGACTTAAAAAGGGAAGGTGCCACGGAGTTGTGGACTTTAACAG
796513 -
66 A
* * * *
796513 AAAAGGGTGCCATGGAGTTGTGGACTTAAAAAGGGAAGGTGCCATGGAATTGTGGACTTTAACAG
1 AAAAGGTTGCCACGGAGTTGTGGACTTAAAAAGGGAAGGTGCCACGGAGTTGTGGACTTTAACAG
*
796578 G
66 A
* *
796579 AAAAGGTTGCCACGAAGTTGTGGACTTAAAAAGGGAA-GTGCCACAGAGTTGTGGACTTTAACAG
1 AAAAGGTTGCCACGGAGTTGTGGACTTAAAAAGGGAAGGTGCCACGGAGTTGTGGACTTTAACAG
796643 A
66 A
* * *
796644 AAAAGGTTGCCATGGAGTTGTGGACTTAAAAAGGGAAGGTGCCACGGAGTTGTGGACTTCAATAG
1 AAAAGGTTGCCACGGAGTTGTGGACTTAAAAAGGGAAGGTGCCACGGAGTTGTGGACTTTAACAG
796709 A
66 A
796710 AAAAGGTTGCCACGGAGTTGTGGACTT
1 AAAAGGTTGCCACGGAGTTGTGGACTT
796737 TGAAAAGAAA
Statistics
Matches: 193, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
55 24 0.12
57 3 0.02
60 22 0.11
65 59 0.31
66 85 0.44
ACGTcount: A:0.32, C:0.13, G:0.33, T:0.23
Consensus pattern (66 bp):
AAAAGGTTGCCACGGAGTTGTGGACTTAAAAAGGGAAGGTGCCACGGAGTTGTGGACTTTAACAG
A
Found at i:798798 original size:20 final size:20
Alignment explanation
Indices: 798773--798813 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
798763 TCGTCCCTTG
798773 TGTCATCCATAGCTTGCACT
1 TGTCATCCATAGCTTGCACT
798793 TGTCATCCATAGCTTGCACT
1 TGTCATCCATAGCTTGCACT
798813 T
1 T
798814 ATAGTCATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.29, G:0.15, T:0.37
Consensus pattern (20 bp):
TGTCATCCATAGCTTGCACT
Done.