Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold16
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5287347
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 8769 characters in sequence are not A, C, G, or T
File 6 of 35
Found at i:799592 original size:82 final size:82
Alignment explanation
Indices: 799455--799614 Score: 311
Period size: 82 Copynumber: 2.0 Consensus size: 82
799445 TGATAGATGC
*
799455 CGCGATCAAGAGTGGCAAAATGTCTGTAGGAGAGTCATCTGAACCAAGCAAGAAGCCTGCATTCG
1 CGCGATCAAGAGTGGCAAAATGTCTGTAGGAGAGTCATCTGAACCAAGCAAGAAGCCTGCATTCA
799520 TTAGGAAGAAAGAATGT
66 TTAGGAAGAAAGAATGT
799537 CGCGATCAAGAGTGGCAAAATGTCTGTAGGAGAGTCATCTGAACCAAGCAAGAAGCCTGCATTCA
1 CGCGATCAAGAGTGGCAAAATGTCTGTAGGAGAGTCATCTGAACCAAGCAAGAAGCCTGCATTCA
799602 TTAGGAAGAAAGA
66 TTAGGAAGAAAGA
799615 GGGAGAGGCC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (82 bp):
CGCGATCAAGAGTGGCAAAATGTCTGTAGGAGAGTCATCTGAACCAAGCAAGAAGCCTGCATTCA
TTAGGAAGAAAGAATGT
Found at i:800936 original size:1 final size:1
Alignment explanation
Indices: 800930--800973 Score: 52
Period size: 1 Copynumber: 44.0 Consensus size: 1
800920 GTACAAACAC
* * * *
800930 AAAAAAAAAAAAAACACAAAAAAAAAACAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
800974 GTGCAAGGGC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:800944 original size:17 final size:18
Alignment explanation
Indices: 800924--800973 Score: 84
Period size: 17 Copynumber: 2.8 Consensus size: 18
800914 TCAAAAGTAC
800924 AAACACAAAAAAAAAA-A
1 AAACACAAAAAAAAAACA
800941 AAACACAAAAAAAAAACA
1 AAACACAAAAAAAAAACA
*
800959 AAAAACAAAAAAAAA
1 AAACACAAAAAAAAA
800974 GTGCAAGGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 16 0.52
18 15 0.48
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (18 bp):
AAACACAAAAAAAAAACA
Found at i:800953 original size:20 final size:19
Alignment explanation
Indices: 800930--800973 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 19
800920 GTACAAACAC
800930 AAAAAAAAAAAAAACACAAA
1 AAAAAAAAAAAAAACA-AAA
*
800950 AAAAAAACAAAAAACAAAA
1 AAAAAAAAAAAAAACAAAA
800969 AAAAA
1 AAAAA
800974 GTGCAAGGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAAACAAAA
Found at i:803803 original size:1 final size:1
Alignment explanation
Indices: 803797--803884 Score: 68
Period size: 1 Copynumber: 88.0 Consensus size: 1
803787 AAATCTTCAC
* * ** * * * **
803797 TTTTTTTTTTTGTTTTTTTTTTCTTTTTCCTTTTTTTTGTTTTGTTTTTTTTTCTTTTTCCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
803862 TTTTGTTTTGTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTT
803885 CCAATTGCCA
Statistics
Matches: 67, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 67 1.00
ACGTcount: A:0.00, C:0.08, G:0.06, T:0.86
Consensus pattern (1 bp):
T
Found at i:803845 original size:31 final size:31
Alignment explanation
Indices: 803797--803886 Score: 150
Period size: 31 Copynumber: 3.0 Consensus size: 31
803787 AAATCTTCAC
803797 TTTTTTT-TTTTGTTTTTTTTTTCTTTTTCCT
1 TTTTTTTGTTTTG-TTTTTTTTTCTTTTTCCT
803828 TTTTTTTGTTTTGTTTTTTTTTCTTTTTCCT
1 TTTTTTTGTTTTGTTTTTTTTTCTTTTTCCT
803859 TTTTTTTGTTTTG--TTTTTTTCTTTTTCC
1 TTTTTTTGTTTTGTTTTTTTTTCTTTTTCC
803887 AATTGCCATG
Statistics
Matches: 58, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
29 15 0.26
31 38 0.66
32 5 0.09
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (31 bp):
TTTTTTTGTTTTGTTTTTTTTTCTTTTTCCT
Found at i:812645 original size:31 final size:31
Alignment explanation
Indices: 812561--812652 Score: 125
Period size: 30 Copynumber: 3.0 Consensus size: 31
812551 CTTCAAATAC
812561 CTTCAAAGTCCACGACTCAGTGGCATCTCTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCT-TTT
812593 C--CAAAGTCCACGACTCAGTGGCATCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
* * * *
812622 CTTCAAAGCCCACAACTCCGTGGCACCTTTT
1 CTTCAAAGTCCACGACTCAGTGGCATCTTTT
812653 TCTTTTCTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
29 4 0.07
30 25 0.46
31 24 0.44
32 1 0.02
ACGTcount: A:0.23, C:0.34, G:0.15, T:0.28
Consensus pattern (31 bp):
CTTCAAAGTCCACGACTCAGTGGCATCTTTT
Found at i:812666 original size:37 final size:36
Alignment explanation
Indices: 812616--812729 Score: 133
Period size: 37 Copynumber: 3.2 Consensus size: 36
812606 CTCAGTGGCA
*
812616 TCTTTTCTTCAAAGCCCACAACTCCGTGGCACCTTTT
1 TCTTTTC-TCAAAGCCCACAAATCCGTGGCACCTTTT
* *
812653 TCTTTTCTCCAAAGCCCATAAATCCATGGCACCTTTT
1 TCTTTTCT-CAAAGCCCACAAATCCGTGGCACCTTTT
* * *
812690 TC-TTT-TCAAAGCCCACTATTCTGTGGCACCTTTT
1 TCTTTTCTCAAAGCCCACAAATCCGTGGCACCTTTT
*
812724 CCTTTT
1 TCTTTT
812730 AAGTCCACAA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
34 24 0.36
35 4 0.06
36 4 0.06
37 34 0.52
ACGTcount: A:0.19, C:0.32, G:0.10, T:0.39
Consensus pattern (36 bp):
TCTTTTCTCAAAGCCCACAAATCCGTGGCACCTTTT
Found at i:812717 original size:34 final size:34
Alignment explanation
Indices: 812623--812729 Score: 119
Period size: 34 Copynumber: 3.1 Consensus size: 34
812613 GCATCTTTTC
812623 TTCAAAGCCCAC-AACTCCGTGGCACCTTTTTCTTT
1 TTCAAAGCCCACTAA-TCCGTGGCACCTTTTTC-TT
*
812658 TCTCCAAAGCCCA-TAAATCCATGGCACCTTTTTCTT
1 T-T-CAAAGCCCACT-AATCCGTGGCACCTTTTTCTT
* * *
812694 TTCAAAGCCCACTATTCTGTGGCACCTTTTCCTT
1 TTCAAAGCCCACTAATCCGTGGCACCTTTTTCTT
812728 TT
1 TT
812730 AAGTCCACAA
Statistics
Matches: 62, Mismatches: 5, Indels: 11
0.79 0.06 0.14
Matches are distributed among these distances:
34 28 0.45
35 3 0.05
36 4 0.06
37 25 0.40
38 2 0.03
ACGTcount: A:0.21, C:0.33, G:0.10, T:0.36
Consensus pattern (34 bp):
TTCAAAGCCCACTAATCCGTGGCACCTTTTTCTT
Found at i:812842 original size:33 final size:33
Alignment explanation
Indices: 812712--812843 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 33
812702 CCACTATTCT
* *
812712 GTGGCACCTTT-TCCTTTTAAGTCCACAACTTC
1 GTGGCATCTTTCTCCTTTTAAGTCCACAACTCC
** * *
812744 GTTACATCTTTTTCCCTTTTAAGTCCACGACTCC
1 GTGGCATCTTTCT-CCTTTTAAGTCCACAACTCC
*
812778 GTGGCA-----C-CCTTTTAAGTCCATAACTCC
1 GTGGCATCTTTCTCCTTTTAAGTCCACAACTCC
* *
812805 GTGGCATCTTTCTCCTTTTAAGTCCACAAGTCA
1 GTGGCATCTTTCTCCTTTTAAGTCCACAACTCC
812838 GTGGCA
1 GTGGCA
812844 ACGTTCAAAA
Statistics
Matches: 79, Mismatches: 13, Indels: 15
0.74 0.12 0.14
Matches are distributed among these distances:
27 24 0.30
32 9 0.11
33 24 0.30
34 22 0.28
ACGTcount: A:0.20, C:0.30, G:0.14, T:0.36
Consensus pattern (33 bp):
GTGGCATCTTTCTCCTTTTAAGTCCACAACTCC
Found at i:812843 original size:60 final size:61
Alignment explanation
Indices: 812724--812843 Score: 161
Period size: 61 Copynumber: 2.0 Consensus size: 61
812714 GGCACCTTTT
* * * * *
812724 CCTTTTAAGTCCACAACTTCGTTACATCTTTTTCCCTTTTAAGTCCACGACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGACATCTTTCTCCCTTTTAAGTCCACAACTCAGTGGCAC
* * *
812785 CCTTTTAAGTCCATAACTCCGTGGCATCTTTCT-CCTTTTAAGTCCACAAGTCAGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGACATCTTTCTCCCTTTTAAGTCCACAACTCAGTGGCA
812844 ACGTTCAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
60 23 0.45
61 28 0.55
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (61 bp):
CCTTTTAAGTCCACAACTCCGTGACATCTTTCTCCCTTTTAAGTCCACAACTCAGTGGCAC
Found at i:812982 original size:49 final size:49
Alignment explanation
Indices: 812909--814259 Score: 1229
Period size: 49 Copynumber: 27.8 Consensus size: 49
812899 GGCGTCTTCT
* * *
812909 TTTAAGTCCAATATTGCTGGCCTTGAATTAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
812958 CTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * * * *
813010 TTTAAGTCCAATGTCGCTGACCTTGAATCATCACATTGGTACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * * *
813059 TTTAAGCCCAATATCGTTGCCCTTAAATCAGCATATTGGCACCTT-GTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * * * *
813107 TTTAAGACCAATGTTGTTGGCCTTGAATTAGCACATTGG------CA-C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
813149 ---AAGTCCAATATCGCTGGCCTTGACTCAGCATATTGGCACCTT-GTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
813194 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * *
813237 TTTAAGTCCAATATCGCTAGCCTTGACTCAGCATATTGGAACCTT-TTC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * ***
813285 TTTAAGACCAATGTCACTGGCCTTGAATCAGTGCATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
813328 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTTGCACCTTTACC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
813377 TTATTGAGTCCAATATTGCTGGCCTTGAATCAGCGTATTGGCACCCTTCCCATC
1 -T-TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTT--CATC
* * * * **
813431 TTTTAAGACCAATGTCGCTGGCCTTTATTCAGCACGTTGG------CA-C
1 -TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
813474 ---AAGTCCAATATTGCTGGCCTTGACTCAGCATATTGGCA----C--C
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
813514 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
813563 TTTAAGTCCAATATCGCTGGCTTTGAATCAGCATATTAGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * *
813615 TTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * * *
813664 TTTAAGTCCAATGTCGTTAGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
813713 TTTCAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* *
813765 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
*
813814 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATG
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* * * * *
813866 TTTAAGTCCAATGTCACTAGCCTTGAATCAGCACATTGACACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* * *
813915 TTTAAGTCCAATGTCGCTCGCCTTGAATCAGCATATTAGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
*
813964 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC--T-TCATC
* *
814016 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
* *
814065 TTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCGCCTTCATTATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTC---ATC
** * * * * *
814117 TTTGAAACCCAATGTCGTTGGCCTTGAATCAGTACATTGGCATTCTTCTTATC
1 TTT-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CCTTC--ATC
* * * * * * * *
814170 TTCAAGACTAATGTCGCTGACCTTGAATCAGCACATTGACATTCTTTACATC
1 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--CCTT-CATC
** *
814222 TTTAAACCCAATATCACTGGTCC-TGAATCAGCATATTG
1 TTTAAGTCCAATATCGCTGG-CCTTGAATCAGCATATTG
814260 TTACCTTTAT
Statistics
Matches: 1072, Mismatches: 166, Indels: 125
0.79 0.12 0.09
Matches are distributed among these distances:
39 58 0.05
40 1 0.00
41 1 0.00
42 1 0.00
43 105 0.10
44 2 0.00
45 1 0.00
47 1 0.00
48 101 0.09
49 389 0.36
50 6 0.01
51 41 0.04
52 285 0.27
53 71 0.07
54 9 0.01
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (49 bp):
TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
Found at i:813088 original size:101 final size:99
Alignment explanation
Indices: 812909--814259 Score: 1265
Period size: 101 Copynumber: 13.9 Consensus size: 99
812899 GGCGTCTTCT
* * * *
812909 TTTAAGTCCAATATTGCTGGCCTTGAATTAGCACATTGGCACCTTCATCCTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
*
812974 CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
66 CTGGCCTTGAATCAGCATATTGGCACC-TT-TCATC
* * * *
813010 TTTAAGTCCAATGTCGCTGACCTTGAATCATCACATTGGTACCTTCATCTTTAAGCCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
* * * *
813075 TTGCCCTTAAATCAGCATATTGGCACC-TT-GTC
66 CTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * * *
813107 TTTAAGACCAATGTTGTTGGCCTTGAATTAGCACATTGG------CA-C---AAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
* *
813162 CTGGCCTTGACTCAGCATATTGGCACC-TT-GTC
66 CTGGCCTTGAATCAGCATATTGGCACCTTTCATC
*
813194 TTTAAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
* * *
813253 CTAGCCTTGACTCAGCATATTGGAACCTTT--TC
66 CTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * **
813285 TTTAAGACCAATGTCACTGGCCTTGAATCAGTGCATTGGCA----C--CTTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
* *
813344 CTGGCCTTGAATCAGCATATTTGCACCTTT-ACC
66 CTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * * ** *
813377 TTATTGAGTCCAATATTGCTGGCCTTGAATCAGCGTATTGGCACCCTTCCCATCTTTTAAGACCA
1 -T-TTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CATC-TTTAAGTCCA
* * * **
813442 ATGTCGCTGGCCTTTATTCAGCACGTTGG-------CA-C
60 ATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * * * *
813474 ---AAGTCCAATATTGCTGGCCTTGACTCAGCATATTGGCA----C--CTTTAAGTCCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
* *
813530 CTGGCCTTGAATCAGTACATTGGCACC-TTCATC
66 CTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * * * * *
813563 TTTAAGTCCAATATCGCTGGCTTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATA
* *
813628 TCGTTGGCCTTGAATCAGCACATTGGCACC-TTCATC
63 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * *
813664 TTTAAGTCCAATGTCGTTAGCCTTGAATCAGCACATTGGCACCTTCATCTTTCAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
*
813729 CTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATC
66 CTGGCCTTGAATCAGCATATTGGCACC-TT-TCATC
813765 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
*
813830 CTGGCCTTGAATCAGCATATTGGCACCTTTGTCATG
66 CTGGCCTTGAATCAGCATATTGGCACC-TT-TCATC
* * * *
813866 TTTAAGTCCAATGTCACTAGCCTTGAATCAGCACATTGACACCTTCATCTTTAAGTCCAATGTCG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
* *
813931 CTCGCCTTGAATCAGCATATTAGCACC-TTCATC
66 CTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * * *
813964 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATG
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATA
*
814029 TCGCTGGCCTTGAATCAGCACATTGGCACC-TTCATC
63 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTCATC
* * * * **
814065 TTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCGCCTTCATTATCTTTGAAACCCAAT
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTC---ATCTTT-AAGTCCAAT
* * * * * *
814130 GTCGTTGGCCTTGAATCAGTACATTGGCATTCTTCTTATC
62 ATCGCTGGCCTTGAATCAGCATATTGGCA-CCTT-TCATC
* * * * * * **
814170 TTCAAGACTAATGTCGCTGACCTTGAATCAGCACATTGACATTCTTTACATCTTTAAACCCAATA
1 TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--CCTT-CATCTTTAAGTCCAATA
*
814235 TCACTGGTCC-TGAATCAGCATATTG
63 TCGCTGG-CCTTGAATCAGCATATTG
814260 TTACCTTTAT
Statistics
Matches: 1073, Mismatches: 121, Indels: 109
0.82 0.09 0.08
Matches are distributed among these distances:
82 34 0.03
83 1 0.00
85 1 0.00
87 76 0.07
88 3 0.00
89 2 0.00
90 1 0.00
91 124 0.12
92 71 0.07
93 1 0.00
94 33 0.03
97 36 0.03
98 88 0.08
99 5 0.00
100 2 0.00
101 451 0.42
102 34 0.03
103 2 0.00
104 60 0.06
105 44 0.04
107 3 0.00
108 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (99 bp):
TTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCG
CTGGCCTTGAATCAGCATATTGGCACCTTTCATC
Found at i:813739 original size:150 final size:147
Alignment explanation
Indices: 813149--814207 Score: 1044
Period size: 150 Copynumber: 7.2 Consensus size: 147
813139 ACATTGGCAC
* * * * *
813149 AAGTCCAATATCGCTGGCCTTGACTCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGCTG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTG
* * * *
813213 GCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTAGCCTTGACTCAGCATA
66 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACA
* *
813272 TTGGAACCTT-TTCTTT
131 TTGGCACCTTCATCTTT
* * ** *
813288 AAGACCAATGTCACTGGCCTTGAATCAGTGCATTGGCA----C--CTTTAAGTCCAATATCGCTG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTG
* * * * * * * *
813347 GCCTTGAATCAGCATATTTGCACCTTTACCTTATTGAGTCCAATATTGCTGGCCTTGAATCAGCG
66 GCCTTGAATCAGCACATTGGCACCTTCATC-T-TTAAGTCCAATGTCGCTGGCCTTGAATCAGCA
*
813412 TATTGGCACCCTTCCCATCTTTT
129 CATTGGCA-CCTT--CATC-TTT
* * * * * *
813435 AAGACCAATGTCGCTGGCCTTTATTCAGCACGTTGG------CA-C---AAGTCCAATATTGCTG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTG
* * *
813490 GCCTTGACTCAGCATATTGGCA----C--CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGTACA
66 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACA
813549 TTGGCACCTTCATCTTT
131 TTGGCACCTTCATCTTT
* * * * *
813566 AAGTCCAATATCGCTGGCTTTGAATCAGCATATTAGCGCCTTTGTCATCTTTAAGTCCAATGTCG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATGTCG
* * *
813631 TTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGTTAGCCTTGAATCAGC
63 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGC
813696 ACATTGGCACCTTCATCTTT
128 ACATTGGCACCTTCATCTTT
* * * *
813716 CAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAATGTCG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACC--T-TCATCTTTAAGTCCAATGTCG
*
813781 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
63 CTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGC
* *
813846 ATATTGGCACCTTTGTCATGTTT
128 ACATTGGCACC--T-TCATCTTT
* * * *
813869 AAGTCCAATGTCACTAGCCTTGAATCAGCACATTGACACCTTCATCTTTAAGTCCAATGTCGCTC
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTG
* * * *
813934 GCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
66 GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACA
*
813999 TTGGCGCCTTTGTCATCTTT
131 TTGGCACC--T-TCATCTTT
* *
814019 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCACTG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTG
* * ** *
814084 GCCTTGAATCAGCATATTGGCGCCTTCATTATCTTTGAAACCCAATGTCGTTGGCCTTGAATCAG
66 GCCTTGAATCAGCACATTGGCACCTTC---ATCTTT-AAGTCCAATGTCGCTGGCCTTGAATCAG
* * *
814149 TACATTGGCATTCTTCTTATCTTC
127 CACATTGGCA-CCTTC--ATCTTT
* * *
814173 AAGACTAATGTCGCTGACCTTGAATCAGCACATTG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTG
814208 ACATTCTTTA
Statistics
Matches: 784, Mismatches: 92, Indels: 73
0.83 0.10 0.08
Matches are distributed among these distances:
131 31 0.04
132 4 0.01
134 42 0.05
135 34 0.04
136 1 0.00
137 1 0.00
139 31 0.04
140 3 0.00
141 2 0.00
142 34 0.04
143 39 0.05
144 33 0.04
145 1 0.00
146 3 0.00
147 33 0.04
148 1 0.00
150 371 0.47
151 1 0.00
152 3 0.00
153 47 0.06
154 68 0.09
155 1 0.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (147 bp):
AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTG
GCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACA
TTGGCACCTTCATCTTT
Found at i:813911 original size:251 final size:249
Alignment explanation
Indices: 813149--814259 Score: 1275
Period size: 251 Copynumber: 4.5 Consensus size: 249
813139 ACATTGGCAC
* * * *
813149 AAGTCCAATATCGCTGGCCTTGACTCAGCATATTGGCACCTT-GTCTTTAAGACCAATGTCGCTG
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTG
* *
813213 GCCTTGAATCAGCACATTGGCA---C--CTTTAAGTCCAATATCGCTAGCCTTGACTCAGCATAT
66 GCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
** * * **
813273 TGGAACCTT-T--TCTTTAAGACCAATGTCACTGGCCTTGAATCAGTGCATTGGCA----C--CT
131 TGGCGCCTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCT
* * *
813329 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTTGCACCTTT-ACCT-TATT
196 TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCT-TT
* * * **
813382 GAGTCCAATATTGCTGGCCTTGAATCAGCGTATTGGCACCCTTCCCATCTTTTAAGACCAATGTC
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTT--CATC-TTTAAGACCAATGTC
* * * * *
813447 GCTGGCCTTTATTCAGCACGTTGG-----CA-C---AAGTCCAATATTGCTGGCCTTGACTCAGC
62 GCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGC
* *
813503 ATATT---G----G-CACCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTC
127 ATATTGGCGCCTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTC
* * *
813560 ATCTTTAAGTCCAATATCGCTGGCTTTGAATCAGCATATTAGCGCCTTTGTCATCTTT
192 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTT
* * * *
813618 AAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTCGTTA
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTG
*
813683 GCCTTGAATCAGCACATTGGCACCTTCATCTTTCAGTCCAATATCGCTGGCCTTGAATCAGCATA
66 GCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
813748 TTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
130 TTGGCGCC-TTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
*
813813 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATGTTT
194 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTT
* * * * *
813869 AAGTCCAATGTCACTAGCCTTGAATCAGCACATTGACACCTTCATCTTTAAGTCCAATGTCGCTC
1 AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTG
* *
813934 GCCTTGAATCAGCATATTAGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
66 GCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATA
813999 TTGGCGCCTTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
130 TTGGCGCC-TTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCAT
* * ** *
814064 CTTTAAGTCCAATATCACTGGCCTTGAATCAGCATATTGGCGCCTTCATTATCTTT
194 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTT
** * * * * *
814120 GAAACCCAATGTCGTTGGCCTTGAATCAGTACATTGGCATTCTTCTTATCTTCAAGACTAATGTC
1 -AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTC--ATCTTTAAGACCAATGTC
* * ** *
814185 GCTGACCTTGAATCAGCACATTGACATTCTTTACATCTTTAAACCCAATATCACTGGTCC-TGAA
62 GCTGGCCTTGAATCAGCACATTGGCA--C-TT-CATCTTTAAGTCCAATATCGCTGG-CCTTGAA
814249 TCAGCATATTG
122 TCAGCATATTG
814260 TTACCTTTAT
Statistics
Matches: 758, Mismatches: 76, Indels: 63
0.85 0.08 0.07
Matches are distributed among these distances:
229 39 0.05
232 33 0.04
233 39 0.05
234 36 0.05
235 48 0.06
236 37 0.05
237 4 0.01
238 38 0.05
239 1 0.00
242 31 0.04
245 1 0.00
250 1 0.00
251 338 0.45
252 31 0.04
253 4 0.01
255 36 0.05
256 1 0.00
257 2 0.00
258 36 0.05
259 2 0.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (249 bp):
AAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATGTCGCTG
GCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
TGGCGCCTTGTCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCT
TTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTTT
Found at i:814850 original size:13 final size:13
Alignment explanation
Indices: 814832--814859 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
814822 CATTACTCAA
814832 TGTATCGATACAT
1 TGTATCGATACAT
814845 TGTATCGATACAT
1 TGTATCGATACAT
814858 TG
1 TG
814860 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:814851 original size:33 final size:33
Alignment explanation
Indices: 814812--814877 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
814802 TTTACCCAAA
814812 TGTATCGATACATT-ACTCAATGTATCGATACAT
1 TGTATCGATACATTGA-TCAATGTATCGATACAT
**
814845 TGTATCGATACATTGATCTTTGTATCGATACAT
1 TGTATCGATACATTGATCAATGTATCGATACAT
814878 CCGGGAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATTGATCAATGTATCGATACAT
Found at i:814866 original size:84 final size:84
Alignment explanation
Indices: 814725--814928 Score: 381
Period size: 84 Copynumber: 2.4 Consensus size: 84
814715 ACTGCCAAGG
*
814725 AAATGTATCGATACATTACTCAATGTATCGATACATTGTATCAATACATTGATCTTTGTATTGAT
1 AAATGTATCGATACATTACTCAATGTATCGATACATTGTATCAATACATTGATCTTTGTATCGAT
814790 ACATCCGAGAATTTTACCC
66 ACATCCGAGAATTTTACCC
*
814809 AAATGTATCGATACATTACTCAATGTATCGATACATTGTATCGATACATTGATCTTTGTATCGAT
1 AAATGTATCGATACATTACTCAATGTATCGATACATTGTATCAATACATTGATCTTTGTATCGAT
*
814874 ACATCCGGGAATTTTACCC
66 ACATCCGAGAATTTTACCC
814893 AAATGTATCGATACATTACTCAATGTATCGATACAT
1 AAATGTATCGATACATTACTCAATGTATCGATACAT
814929 GTAGGTAAAT
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
84 117 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (84 bp):
AAATGTATCGATACATTACTCAATGTATCGATACATTGTATCAATACATTGATCTTTGTATCGAT
ACATCCGAGAATTTTACCC
Found at i:818609 original size:32 final size:33
Alignment explanation
Indices: 818548--818609 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
818538 CACCCAAATG
* **
818548 TATCGATACATATTGCTTAGTATTGATACATTA
1 TATCGATACATATTGCATAGTATCAATACATTA
*
818581 TATCGATACATGTT-CATAGTATCAATACA
1 TATCGATACATATTGCATAGTATCAATACA
818610 CCTTGAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 12 0.48
33 13 0.52
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (33 bp):
TATCGATACATATTGCATAGTATCAATACATTA
Found at i:824487 original size:79 final size:79
Alignment explanation
Indices: 824407--824805 Score: 323
Period size: 79 Copynumber: 5.1 Consensus size: 79
824397 TTTGGAGATA
* * *
824407 AAAAT-GGGGTTGGAGTATCCCTTCAGAAATAATGAGGTTCGAGTATCCCCGATGTTGAAAATTT
1 AAAATCGGGGTTGGAGTATCCCTTCAGAAATAACGAGGTTGGAGTATCCCCGATGTTGAAAAATT
*
824471 GGTGTTCTA-AATAT
66 GGTGTTTTAGAA-AT
* * * * *
824485 AAAATCGGGTTTGGAGTATCCCCTC-GTAAATAAC-AGGGTTGGAGTATCCCCGATATTGGAAGA
1 AAAATCGGGGTTGGAGTATCCCTTCAG-AAATAACGA-GGTTGGAGTATCCCCGATGTTGAAAAA
** *
824548 TCCGTGCTTTAGAAAT
64 TTGGTGTTTTAGAAAT
* * * * *
824564 AAAATCGGGGTTAGAGTATCCCCTTGA-AAATAATG-GGATTGGAGTATCCTCAATAG-TGAAAA
1 AAAATCGGGGTTGGAGTAT-CCCTTCAGAAATAACGAGG-TTGGAGTATCCCCGAT-GTTG-AAA
*
824626 AATTGGTGTTTTAGGAAT
62 AATTGGTGTTTTAGAAAT
* * ** * * *
824644 AAAATCGAGGTTGGAGTATCCCCTT-AGAAATAACGGGGTTAAAGTATCCCTGACGGT-AAGAAA
1 AAAATCGGGGTTGGAGTAT-CCCTTCAGAAATAACGAGGTTGGAGTATCCCCGATGTTGAA-AAA
*
824707 TTGGTGTTTTAAAAAT
64 TTGGTGTTTTAGAAAT
* * * * * * *
824723 AAAACCGGGGTTAGAGTGTCCCCTCA-AAATAACGGGGTTGGAGTATCCCCGATGGTGGAAAATT
1 AAAATCGGGGTTGGAGTATCCCTTCAGAAATAACGAGGTTGGAGTATCCCCGATGTTGAAAAATT
* *
824787 GATATTTTAGAAAT
66 GGTGTTTTAGAAAT
824801 GAAAA
1 -AAAA
824806 CATCAATGAA
Statistics
Matches: 254, Mismatches: 50, Indels: 33
0.75 0.15 0.10
Matches are distributed among these distances:
78 57 0.22
79 133 0.52
80 62 0.24
81 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (79 bp):
AAAATCGGGGTTGGAGTATCCCTTCAGAAATAACGAGGTTGGAGTATCCCCGATGTTGAAAAATT
GGTGTTTTAGAAAT
Found at i:824692 original size:159 final size:157
Alignment explanation
Indices: 824407--824787 Score: 373
Period size: 159 Copynumber: 2.4 Consensus size: 157
824397 TTTGGAGATA
* * * *
824407 AAAAT-GGGGTTGGAGTAT-CCCTTCAGAAATAATGAGGTTCGAGTATCCCCGATGTTGAAAATT
1 AAAATCGGGGTTAGAGTATCCCCTTCA-AAATAATG-GGTTGGAGTATCCCCAATGTTGAAAAAT
* **
824470 TGGTGTTCTAAATATAAAATCGGGTTTGGAGTATCCCCTCGTAAATAACAGGGTTGGAGTATCCC
64 TGGTGTTCTAAATATAAAATCGGGTTTGGAGTATCCCCTAGTAAATAACAGGGTTAAAGTATCCC
* ** *
824535 CGA-TATTGGAAGATCCGTGCTTTAGAAAT
129 CGACGATAAGAA-ATCCGTGCTTTAAAAAT
* *
824564 AAAATCGGGGTTAGAGTATCCCCTTGAAAATAATGGGATTGGAGTATCCTCAATAG-TGAAAAAA
1 AAAATCGGGGTTAGAGTATCCCCTTCAAAATAATGGG-TTGGAGTATCCCCAAT-GTTG-AAAAA
* * *
824628 TTGGTGTTTTAGGA-ATAAAATCGAGG-TTGGAGTATCCCCTTAG-AAATAACGGGGTTAAAGTA
63 TTGGTGTTCTA-AATATAAAATCG-GGTTTGGAGTATCCCC-TAGTAAATAACAGGGTTAAAGTA
* * ** *
824690 TCCCTGACGGTAAGAAATTGGTGTTTTAAAAAT
125 TCCCCGACGATAAGAAATCCGTGCTTTAAAAAT
* * * * * *
824723 AAAACCGGGGTTAGAGTGTCCCC-TCAAAATAACGGGGTTGGAGTATCCCCGATGGTGGAAAATT
1 AAAATCGGGGTTAGAGTATCCCCTTCAAAATAA-TGGGTTGGAGTATCCCCAATGTTGAAAAATT
824787 G
65 G
824788 ATATTTTAGA
Statistics
Matches: 185, Mismatches: 28, Indels: 22
0.79 0.12 0.09
Matches are distributed among these distances:
157 15 0.08
158 59 0.32
159 102 0.55
160 9 0.05
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (157 bp):
AAAATCGGGGTTAGAGTATCCCCTTCAAAATAATGGGTTGGAGTATCCCCAATGTTGAAAAATTG
GTGTTCTAAATATAAAATCGGGTTTGGAGTATCCCCTAGTAAATAACAGGGTTAAAGTATCCCCG
ACGATAAGAAATCCGTGCTTTAAAAAT
Found at i:830330 original size:149 final size:149
Alignment explanation
Indices: 830160--830459 Score: 582
Period size: 149 Copynumber: 2.0 Consensus size: 149
830150 CCAAAATTCA
830160 TTCAACAACATTAAAACAACATAAATGAACATCAAATTCACATACAATTAAGCACATTTCAACAA
1 TTCAACAACATTAAAACAACATAAATGAACATCAAATTCACATACAATTAAGCACATTTCAACAA
830225 CAATTGATCCAAAAACACAAAATTTATTCAAATAAATTATCAAAAGTGCAACATGACATTTCATG
66 CAATTGATCCAAAAACACAAAATTTATTCAAATAAATTATCAAAAGTGCAACATGACATTTCATG
*
830290 TGATCAAAAATAATCATAT
131 TGATAAAAAATAATCATAT
*
830309 TTCAACAACATTAAAACAACATAAATGAACATCAAATTCACATATAATTAAGCACATTTCAACAA
1 TTCAACAACATTAAAACAACATAAATGAACATCAAATTCACATACAATTAAGCACATTTCAACAA
830374 CAATTGATCCAAAAACACAAAATTTATTCAAATAAATTATCAAAAGTGCAACATGACATTTCATG
66 CAATTGATCCAAAAACACAAAATTTATTCAAATAAATTATCAAAAGTGCAACATGACATTTCATG
830439 TGATAAAAAATAATCATAT
131 TGATAAAAAATAATCATAT
830458 TT
1 TT
830460 GGCAATGTAA
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 149 1.00
ACGTcount: A:0.50, C:0.17, G:0.05, T:0.27
Consensus pattern (149 bp):
TTCAACAACATTAAAACAACATAAATGAACATCAAATTCACATACAATTAAGCACATTTCAACAA
CAATTGATCCAAAAACACAAAATTTATTCAAATAAATTATCAAAAGTGCAACATGACATTTCATG
TGATAAAAAATAATCATAT
Found at i:842503 original size:49 final size:49
Alignment explanation
Indices: 842346--842810 Score: 380
Period size: 49 Copynumber: 9.6 Consensus size: 49
842336 GACAATGTGT
* * * * * *
842346 TGATTCATGGCCAACGACATTAGACGTGAAGAAGAA--TGCCAATGTGC
1 TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
** * * * *
842393 TGAGACAAGGCCAACGACATTGGGCTTAGGAATGTTAAAGATGCCAATATGC
1 TGATTCAAGGCCAACGACATTGGACTTA--AA-GATGAAGGTGCCAATATGC
* * * * *
842445 TGATTCAAGGCCAAAGATATCGGACTTAAGGATGAAGGTGCCAATGTGC
1 TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * * * * **
842494 TAATGCAAGGTCAACGACATTGGTCTTAAAGATAAAGGTGCCAATATAA
1 TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * * * * *
842543 TAATTCAAGGCCAGCGATATCGGACTTAAAGATGAAGATGCCAATGTGC
1 TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
* ** *
842592 TGATTAAAGGCCGGCGACATTGGACTTAAAGATGGGTAAGGTGCCAATGTGC
1 TGATTCAAGGCCAACGACATTGGACTTAAAGAT--G-AAGGTGCCAATATGC
* *
842644 TGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAAGTGCCAATATGC
1 TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * * *
842693 TGATTCAAGGCCAGCGATATTGGGC-T-----T----GTGCCAATGTGC
1 TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
* * * *
842732 TGATTTAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATGTGC
1 TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
842780 TGATTCAAGGCCAACGATATTGGACTTAAAG
1 TGATTCAAGGCCAACGACATTGGACTTAAAG
842811 GTGTCACGGA
Statistics
Matches: 332, Mismatches: 68, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
39 32 0.10
40 1 0.00
43 1 0.00
47 21 0.06
48 41 0.12
49 155 0.47
50 5 0.02
51 1 0.00
52 75 0.23
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (49 bp):
TGATTCAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATATGC
Found at i:842653 original size:150 final size:140
Alignment explanation
Indices: 842430--842810 Score: 439
Period size: 150 Copynumber: 2.7 Consensus size: 140
842420 AGGAATGTTA
* * * * * *
842430 AAGATGCCAATATGCTGATTCAAGGCCAAAGATATCGGACTTAAGGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATGTGCTGATTAAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* * *
842495 AATGCAAGGTCAACGACATTGGTCTTAAAGAT-AAAGGTGCCAATATAATAATTCAAGGCCAGCG
66 GATTCAAGGCCAACGACATTGGTCTTAAAGATGAAA-GTGCCAATATAATAATTCAAGGCCAGCG
842559 ATATCGGACTTAAAGAT
130 ATATCGGAC-T-----T
**
842576 GAAGATGCCAATGTGCTGATTAAAGGCCGGCGACATTGGACTTAAAGATGGGTAAGGTGCCAATG
1 -AAGATGCCAATGTGCTGATTAAAGGCCAACGACATTGGACTTAAAGAT--G-AAGGTGCCAATG
** *
842641 TGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAAGTGCCAATATGCTGATTCAAGGCCA
62 TGCTGATTCAAGGCCAACGACATTGGTCTTAAAGATGAAAGTGCCAATATAATAATTCAAGGCCA
* *
842706 GCGATATTGGGCTT
127 GCGATATCGGACTT
* * *
842720 --G-TGCCAATGTGCTGATTTAAGGCCAACGACATTGGTCTTAAAGA-CAAGGTGCCAATGTGCT
1 AAGATGCCAATGTGCTGATTAAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCT
* *
842781 GATTCAAGGCCAACGATATTGGACTTAAAG
66 GATTCAAGGCCAACGACATTGGTCTTAAAG
842811 GTGTCACGGA
Statistics
Matches: 207, Mismatches: 23, Indels: 19
0.83 0.09 0.08
Matches are distributed among these distances:
136 44 0.21
140 39 0.19
141 1 0.00
144 1 0.00
147 40 0.19
149 2 0.01
150 77 0.37
151 3 0.01
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (140 bp):
AAGATGCCAATGTGCTGATTAAAGGCCAACGACATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GATTCAAGGCCAACGACATTGGTCTTAAAGATGAAAGTGCCAATATAATAATTCAAGGCCAGCGA
TATCGGACTT
Found at i:842887 original size:35 final size:35
Alignment explanation
Indices: 842818--843127 Score: 206
Period size: 33 Copynumber: 9.6 Consensus size: 35
842808 AAGGTGTCAC
*
842818 GGAGTTGTGGACTTACAA-GA-AAAAGGGATGCCAT
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGG-TGCCAT
* * *
842852 GGAGGTGTGGGCTTAAAAGGGGAAAAGGGTGCCAT
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
*
842887 GGAGTTGTGGACTTAAAA--AGAAAA-GGTGCCAC
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
* * *
842919 GGAGTTGTGGACTTAAAAGGA-ATAA-GTTGCCAC
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
* * * *
842952 GAAGTTATGGACTTAAAAGGA-AAAA-GATGCTAT
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
*
842985 GGAGTTGTGGACTT------A-AAAA-GGTGCCAC
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
* *
843012 GGAATTGTGGACTT--------AAAAGGGTGCCAC
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
* * * * *
843039 GAAATTATGGACTTAAAAGGAAAAAAGAGTGCCAT
1 GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
* * *
843074 GGAGTTGTGGGCTTTAAAA--AGAAAAAGGTGCCAC
1 GGAGTTGTGGAC-TTAAAAGGAGAAAAGGGTGCCAT
843108 GGAGTTGTGGACTTAAAAGG
1 GGAGTTGTGGACTTAAAAGG
843128 GTGCCATAGA
Statistics
Matches: 225, Mismatches: 35, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
26 4 0.02
27 43 0.19
32 25 0.11
33 60 0.27
34 38 0.17
35 42 0.19
36 13 0.06
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (35 bp):
GGAGTTGTGGACTTAAAAGGAGAAAAGGGTGCCAT
Found at i:842963 original size:33 final size:32
Alignment explanation
Indices: 842815--843410 Score: 263
Period size: 27 Copynumber: 18.7 Consensus size: 32
842805 TTAAAGGTGT
* *
842815 CACGGAGTTGTGGACTTACAAGAAAAAGGGATGC
1 CACGGAGTTGTGGACTTAAAAGGAAAA--GATGC
* * * *
842849 CATGGAGGTGTGGGCTTAAAAGGGGAAAAGGGTGC
1 CACGGAGTTGTGGACTTAAAA--GGAAAA-GATGC
* * *
842884 CATGGAGTTGTGGACTTAAAAAGAAAAGGTGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
*
842916 CACGGAGTTGTGGACTTAAAAGGAATAAGTTGC
1 CACGGAGTTGTGGACTTAAAAGGAA-AAGATGC
* *
842949 CACGAAGTTATGGACTTAAAAGGAAAAAGATGC
1 CACGGAGTTGTGGACTTAAAAGG-AAAAGATGC
* * *
842982 TATGGAGTTGTGGACTT---A--AAAAGGTGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
*
843009 CACGGAATTGTGGACTTAAAAGG----G-TGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
* * *
843036 CACGAAATTATGGACTTAAAAGGAAAAAAGAGTGC
1 CACGGAGTTGTGGACTTAAAAGG--AAAAGA-TGC
* * * *
843071 CATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGC
1 CACGGAGTTGTGGAC-TT-AAAAGGAAAAGATGC
843105 CACGGAGTTGTGGACTTAAAAGG----G-TGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
** * * *
843132 CATAGAGTTGTGGGCTTTGAAAAGAAAAAGGTGC
1 CACGGAGTTGTGGAC-TT-AAAAGGAAAAGATGC
* * * * * *
843166 CACAGAATCAGTGGATTTAGAAAAGAAAAAGGTGC
1 CACGGAGT-TGTGGACTT--AAAAGGAAAAGATGC
* * ** ** *
843201 CCCAG-GTCATGGACTT--TGGGAAGAGATGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
* ** **
843230 CACTGAGTCATGGACTTTGAA-GAAAAGATGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
* ** *
843261 CACTGAGTTGTGGACTT-TGA-GAAGAGATGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
* *
843291 CACTGAGTCGTGGACTTAAAAGG----G-TGC
1 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
*
843318 CACGGAATTGTGGACTTAAAAGGAAAAAAAGAGTGC
1 CACGGAGTTGTGGACTTAAAAGG---AAAAGA-TGC
* ** * *
843354 CACGGAGTTGTGGGCTTTAAAAACAAAAAGGTTC
1 CACGGAGTTGTGGAC-TT-AAAAGGAAAAGATGC
* *
843388 TACGGAGTTGTAGACTTAAAAGG
1 CACGGAGTTGTGGACTTAAAAGG
843411 GTGCCACAGA
Statistics
Matches: 437, Mismatches: 81, Indels: 90
0.72 0.13 0.15
Matches are distributed among these distances:
27 84 0.19
28 5 0.01
29 16 0.04
30 39 0.09
31 25 0.06
32 38 0.09
33 63 0.14
34 62 0.14
35 71 0.16
36 23 0.05
37 7 0.02
38 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.21
Consensus pattern (32 bp):
CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
Found at i:843000 original size:66 final size:66
Alignment explanation
Indices: 842810--843128 Score: 245
Period size: 69 Copynumber: 4.9 Consensus size: 66
842800 TGGACTTAAA
* * * *
842810 GGTGTCACGGAGTTGTGGACTTACAAGAAAAAGGGATGCCATGGAGGTGTGGGCTTAAAAGGGGA
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAA--GATGCCATGGAGTTGTGGACTTAAAA-GGGA
842875 AAAG
63 AAAG
* * *
842879 GGTGCCATGGAGTTGTGGACTTAAAA-AGAAAAGGTGCCACGGAGTTGTGGACTTAAAA-GGAAT
1 GGTGCCACGGAGTTGTGGACTTAAAAGA-AAAAGATGCCATGGAGTTGTGGACTTAAAAGGGAA-
842942 AA-
64 AAG
* * * *
842944 GTTGCCACGAAGTTATGGACTTAAAAGGAAAAAGATGCTATGGAGTTGTGGACTT---A---AAA
1 GGTGCCACGGAGTTGTGGACTTAAAA-GAAAAAGATGCCATGGAGTTGTGGACTTAAAAGGGAAA
843003 A-
65 AG
* * * * * * *
843004 GGTGCCACGGAATTGTGGACTTAAAAG-----GGTGCCACGAAATTATGGACTTAAAAGGAAAAA
1 GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAGATGCCATGGAGTTGTGGACTTAAAAGG-GAAA
843064 AG
65 AG
* * * * *
843066 AGTGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGGG
1 GGTGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGATGCCATGGAGTTGTGGACTTAAAAGGG
843129 TGCCATAGAG
Statistics
Matches: 199, Mismatches: 32, Indels: 39
0.74 0.12 0.14
Matches are distributed among these distances:
54 16 0.08
57 1 0.01
59 1 0.01
60 24 0.12
61 6 0.03
62 16 0.08
63 3 0.02
64 5 0.03
65 26 0.13
66 25 0.13
67 23 0.12
68 1 0.01
69 52 0.26
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.21
Consensus pattern (66 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGAAAAAGATGCCATGGAGTTGTGGACTTAAAAGGGAAAA
G
Found at i:843098 original size:36 final size:33
Alignment explanation
Indices: 843026--843465 Score: 135
Period size: 34 Copynumber: 13.8 Consensus size: 33
843016 TTGTGGACTT
* * * * *
843026 AAAAGGGTGCCACGAAATTATGGACTTAAAAGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* *
843059 AAAAAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAG
1 -AAAAAG-GTGCCACGGAGTTGTGGAC-TTAAAAAG
843095 AAAAAGGTGCCACGGAGTTGTGGACTT-AAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
** * *
843127 -----GGTGCCATAGAGTTGTGGGCTTTGAAAAG
1 AAAAAGGTGCCACGGAGTTGTGGAC-TTAAAAAG
* * * *
843156 AAAAAGGTGCCACAGAATCAGTGGATTTAGAAAAG
1 AAAAAGGTGCCACGGAGT-TGTGGACTTA-AAAAG
* * ** **
843191 AAAAAGGTGCCCCAG-GTCATGGACTT---TGG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * * * ** **
843220 GAAGAGATGCCACTGAGTCATGGACTT-TGAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * **
843252 -AAAAGATGCCACTGAGTTGTGGACTT--TGAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * * *
843282 -AAGAGATGCCACTGAGTCGTGGACTT-AAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* *
843313 -----GGTGCCACGGAATTGTGGACTTAAAAGGAA
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAA--AG
* *
843343 AAAAAGAGTGCCACGGAGTTGTGGGCTTTAAAAAC
1 AAAAAG-GTGCCACGGAGTTGTGGAC-TTAAAAAG
* * *
843378 AAAAAGGTTCTACGGAGTTGTAGACTT-AAAAG
1 AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
* * *
843410 -----GGTGCCACAGAGTTATGGACTTTGAAGAA-
1 AAAAAGGTGCCACGGAGTTGTGGAC-TT-AAAAAG
* *
843439 AAAAAGGTGCCACAGAGTCGTGGACTT
1 AAAAAGGTGCCACGGAGTTGTGGACTT
843466 TGGGAAGAGA
Statistics
Matches: 311, Mismatches: 62, Indels: 67
0.71 0.14 0.15
Matches are distributed among these distances:
27 50 0.16
28 7 0.02
29 16 0.05
30 41 0.13
31 25 0.08
32 10 0.03
33 12 0.04
34 69 0.22
35 51 0.16
36 24 0.08
37 6 0.02
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.21
Consensus pattern (33 bp):
AAAAAGGTGCCACGGAGTTGTGGACTTAAAAAG
Found at i:843143 original size:123 final size:122
Alignment explanation
Indices: 842874--843144 Score: 321
Period size: 123 Copynumber: 2.2 Consensus size: 122
842864 TTAAAAGGGG
* * *
842874 AAAAGGGTGCCATGGAGTTGTGGACTTAAAAAGAAAAGGTGCCACGGAGTTGTGGACTTAAAAGG
1 AAAAGGGTGCCATGGAGTTGTGGACTTAAAAAG---AGGTGCCACGAAATTATGGACTTAAAAGG
* * * * *
842939 AATAAGTTGCCACGAAGTTATGGACTTAAAAGGAAAAAGATGCTATGGAGTTGTGGACTT
63 AAAAAGGTGCCACGAAGTTATGGACTTAAAAAGAAAAAGATGCCACGGAGTTGTGGACTT
* * *
842999 AAAAAGGTGCCACGGAATTGTGGACTT-AAAAG-GGTGCCACGAAATTATGGACTTAAAAGGAAA
1 AAAAGGGTGCCATGGAGTTGTGGACTTAAAAAGAGGTGCCACGAAATTATGGACTTAAAAGG-AA
* * * * *
843062 AAAGAGTGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTT
65 AAAG-GTGCCACGAAGTTATGGAC-TTAAAAAGAAAAAGATGCCACGGAGTTGTGGACTT
*
843122 AAAAGGGTGCCATAGAGTTGTGG
1 AAAAGGGTGCCATGGAGTTGTGG
843145 GCTTTGAAAA
Statistics
Matches: 123, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
120 25 0.20
121 5 0.04
122 14 0.11
123 50 0.41
124 5 0.04
125 24 0.20
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.22
Consensus pattern (122 bp):
AAAAGGGTGCCATGGAGTTGTGGACTTAAAAAGAGGTGCCACGAAATTATGGACTTAAAAGGAAA
AAGGTGCCACGAAGTTATGGACTTAAAAAGAAAAAGATGCCACGGAGTTGTGGACTT
Found at i:843240 original size:30 final size:30
Alignment explanation
Indices: 843206--843307 Score: 150
Period size: 30 Copynumber: 3.4 Consensus size: 30
843196 GGTGCCCCAG
*
843206 GTCATGGACTTTGGGAAGAGATGCCACTGA
1 GTCATGGACTTTGAGAAGAGATGCCACTGA
*
843236 GTCATGGACTTTGAAGAAAAGATGCCACTGA
1 GTCATGGACTTTG-AGAAGAGATGCCACTGA
**
843267 GTTGTGGACTTTGAGAAGAGATGCCACTGA
1 GTCATGGACTTTGAGAAGAGATGCCACTGA
*
843297 GTCGTGGACTT
1 GTCATGGACTT
843308 AAAAGGGTGC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
30 39 0.60
31 26 0.40
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (30 bp):
GTCATGGACTTTGAGAAGAGATGCCACTGA
Found at i:843262 original size:31 final size:30
Alignment explanation
Indices: 843210--844231 Score: 810
Period size: 31 Copynumber: 32.6 Consensus size: 30
843200 CCCCAGGTCA
* * *
843210 TGGACTTTGGGAAGAGATGCCACTGAGTCA
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
*
843240 TGGACTTTGAAGAAAAGATGCCACTGAGTTG
1 TGGACTTTG-AGAAAAGATGCCACTGAGTCG
*
843271 TGGACTTTGAGAAGAGATGCCACTGAGTCG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
* * * * *
843301 TGGAC-TT-A-AAAGGGTGCCACGGAATTG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
* * * *
843328 TGGACTTAAAAGGAAAAAAAGAGTGCCACGGAGTTG
1 TGGACTT----TG-AGAAAAGA-TGCCACTGAGTCG
* * * * * * * *
843364 TGGGCTTTAAAAACAAAAAGGTTCTACGGAGTTG
1 TGGACTTT---GA-GAAAAGATGCCACTGAGTCG
* * * * **
843398 TAGAC-TT-A-AAAGGGTGCCACAGAGTTA
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
* *
843425 TGGACTTTGAAGAAAAAAAGGTGCCACAGAGTCG
1 TGGACTTTG-AG---AAAAGATGCCACTGAGTCG
* *
843459 TGGACTTTGGGAAGAGATGCCACTGAGTCG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
* *
843489 TAGACTTTGAAGAAAAAAAGATGCCACTAAGTCG
1 TGGACTTTG-AG---AAAAGATGCCACTGAGTCG
*
843523 TGGACTTTGAAGAAAAAAGATGCCACTGAGTCA
1 TGGACTTTG-AG--AAAAGATGCCACTGAGTCG
* *
843556 AGGACTTGGAAGAAAAAAAGGATGCCACTGAGTCG
1 TGGACTTTG-AG---AAAA-GATGCCACTGAGTCG
* *
843591 TGGAC-TT-AGAAGAGATGCCATTGAGTCG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
* *
843619 TGGACTTGGAAGAGAAGATGCCA-TAGAGTCG
1 TGGACTTTG-AGAAAAGATGCCACT-GAGTCG
843650 TGGACTTTGAGAAAAGAGATTGCCACTGAGTCG
1 TGGACTTTGAG-AAA-AGA-TGCCACTGAGTCG
843683 TGGACTTTGGAAGAAAAGGATGCCACTGAGTCG
1 TGGACTTT-G-AGAAAA-GATGCCACTGAGTCG
* * * *
843716 TGGATTTTGGGAAGAGATGCCACTAAGTCG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
*
843746 TGGACTTTGAGAAGAGATTGCCACTGAGTCG
1 TGGACTTTGAGAAAAGA-TGCCACTGAGTCG
* *
843777 TGGACTTTGAGAAGAGATTGCTACTGAGTCG
1 TGGACTTTGAGAAAAGA-TGCCACTGAGTCG
* * *
843808 TGGACTTTGGGAAGAGATGCCACTGAGTTG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
843838 TGGACTTTGAAGAAAAATGATGCCACTGAGTCG
1 TGGACTTTG-AG-AAAA-GATGCCACTGAGTCG
* *
843871 TGGACTTGGAAGAAAAAAAGGATGCTACTGAGTCG
1 TGGACTTTG-AG---AAAA-GATGCCACTGAGTCG
*
843906 TGGAC-TT-AGAAGAGATGCCACTGAGTCG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
* * *
843934 TGGACTTGGAAGAGAAGATGCCACAGAGTCG
1 TGGACTTTG-AGAAAAGATGCCACTGAGTCG
843965 TGGACTTTGAGAAAAGAGATTGCCACTGAGTCG
1 TGGACTTTGAG-AAA-AGA-TGCCACTGAGTCG
843998 TGGACTTTGGAAGAAAAGGATGCCACTGAGTCG
1 TGGACTTT-G-AGAAAA-GATGCCACTGAGTCG
* *
844031 TGGACTTTGAGAAGAGATTACCACTGAGTCG
1 TGGACTTTGAGAAAAGA-TGCCACTGAGTCG
* *
844062 TGGACTTTGAGAAGAGATTGCCACTGAGTCA
1 TGGACTTTGAGAAAAGA-TGCCACTGAGTCG
844093 TGGACTTTGAAGAAAAGATGCCACTGAGTCG
1 TGGACTTTG-AGAAAAGATGCCACTGAGTCG
* * * *
844124 TGGACTTTGGGAAAAGACGCCACTAAGTTG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
*
844154 TGGACTTTGAAGAAAAAAGATGCCACTGAGTCA
1 TGGACTTTG-AG--AAAAGATGCCACTGAGTCG
* * *
844187 TGGAC-TTG-GAAGAGATGCCACTAAGTTG
1 TGGACTTTGAGAAAAGATGCCACTGAGTCG
844215 TGGACTTTGAGAAAAGA
1 TGGACTTTGAGAAAAGA
844232 AGATTTGAAG
Statistics
Matches: 829, Mismatches: 103, Indels: 120
0.79 0.10 0.11
Matches are distributed among these distances:
27 36 0.04
28 62 0.07
29 14 0.02
30 147 0.18
31 222 0.27
32 25 0.03
33 159 0.19
34 90 0.11
35 56 0.07
36 18 0.02
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.23
Consensus pattern (30 bp):
TGGACTTTGAGAAAAGATGCCACTGAGTCG
Found at i:843529 original size:283 final size:283
Alignment explanation
Indices: 842999--843598 Score: 741
Period size: 283 Copynumber: 2.1 Consensus size: 283
842989 TTGTGGACTT
* * *
842999 AAAAAGG-TGCCACGGAATTGTGGACTTAAAAGGGTGCCACGAAATTATGGACTTAAAAGGAAAA
1 AAAAAGGATGCCACTGAGTCGTGGACTTAAAAGGGTGCCACGAAATTATGGACTTAAAAGGAAAA
* * *
843063 AAGAGTGCCATGGAGTTGTGGGCTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGG
66 AAGAGTGCCACGGAGTTGTGGGCTTTAAAAACAAAAAGGTGCCACGGAGTTGTAGACTTAAAAGG
* * *
843128 GTGCCATAGAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACAGAATCAGTGGATTTAGAAAAGAA
131 GTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACAGAATCAGTGGATTTAG---AGAA
* * * * * *
843193 AAAGGTGCCCCAGGTCATGGACTTTGGGAAGAGATGCCACTGAGTCATGGACTTTGAAG-AAAAG
193 AAAGATGCCACAGGTCATAGACTTTGGAAAAAGATGCCACTAAGTCATGGACTTTGAAGAAAAAG
*** *
843257 ATGCCACTGAGTTGTGGACTTTG-AG
258 ATGCCACTGAGTCAAGGACTTGGAAG
* * *
843282 -AAGA-GATGCCACTGAGTCGTGGACTTAAAAGGGTGCCACGGAATTGTGGACTTAAAAGGAAAA
1 AAAAAGGATGCCACTGAGTCGTGGACTTAAAAGGGTGCCACGAAATTATGGACTTAAAAGG-AAA
* *
843345 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAACAAAAAGGTTCTACGGAGTTGTAGACTTAAAAG
65 AAAGAGTGCCACGGAGTTGTGGGCTTTAAAAACAAAAAGGTGCCACGGAGTTGTAGACTTAAAAG
* *
843410 GGTGCCACAGAGTTATGGACTTTGAAGAA-AAAAAGGTGCCACAGAGTC-GTGGACTTT-G-GGA
130 GGTGCCACAGAGTTATGGACTTTGAA-AAGAAAAAGGTGCCACAGAATCAGTGGA-TTTAGAGAA
* * * *
843471 AGAGATGCCACTGAGTCGTAGACTTTGAAGAAAAAAAGATGCCACTAAGTCGTGGACTTTGAAGA
193 AAAGATGCCACAG-GTCATAGACTTTG--G--AAAAAGATGCCACTAAGTCATGGACTTTGAAG-
843536 AAAAAGATGCCACTGAGTCAAGGACTTGGAAG
252 AAAAAGATGCCACTGAGTCAAGGACTTGGAAG
843568 AAAAAAAGGATGCCACTGAGTCGTGGACTTA
1 --AAAAAGGATGCCACTGAGTCGTGGACTTA
843599 GAAGAGATGC
Statistics
Matches: 270, Mismatches: 31, Indels: 25
0.83 0.10 0.08
Matches are distributed among these distances:
278 11 0.04
279 11 0.04
281 2 0.01
282 57 0.21
283 135 0.50
284 2 0.01
285 24 0.09
286 2 0.01
289 3 0.01
290 23 0.09
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (283 bp):
AAAAAGGATGCCACTGAGTCGTGGACTTAAAAGGGTGCCACGAAATTATGGACTTAAAAGGAAAA
AAGAGTGCCACGGAGTTGTGGGCTTTAAAAACAAAAAGGTGCCACGGAGTTGTAGACTTAAAAGG
GTGCCACAGAGTTATGGACTTTGAAAAGAAAAAGGTGCCACAGAATCAGTGGATTTAGAGAAAAA
GATGCCACAGGTCATAGACTTTGGAAAAAGATGCCACTAAGTCATGGACTTTGAAGAAAAAGATG
CCACTGAGTCAAGGACTTGGAAG
Found at i:843879 original size:315 final size:315
Alignment explanation
Indices: 843446--844199 Score: 1258
Period size: 315 Copynumber: 2.4 Consensus size: 315
843436 GAAAAAAAGG
* * * *
843446 TGCCACAGAGTCGTGGACTTTGGGAAGAGATGCCACTGAGTCGTAGACTTTGAAGAAAAAAAGAT
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTG--G--GAAAAGAT
* *
843511 GCCACTAAGTCGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCAAGGACTTGGAAGAAAAAAAG
62 GCCACTAAGTTGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAAG
*
843576 GATGCCACTGAGTCGTGGACTTAGAAGAGATGCCATTGAGTCGTGGACTTGGAAGAGAAGATGCC
127 GATGCCACTGAGTCGTGGACTTAGAAGAGATGCCACTGAGTCGTGGACTTGGAAGAGAAGATGCC
*
843641 ATAGAGTCGTGGACTTTGAGAAAAGAGATTGCCACTGAGTCGTGGACTTTGGAAGAAAAGGATGC
192 ACAGAGTCGTGGACTTTGAGAAAAGAGATTGCCACTGAGTCGTGGACTTTGGAAGAAAAGGATGC
* * *
843706 CACTGAGTCGTGGATTTTGGGAAGAGA-TGCCACTAAGTCGTGGACTTTGAGAAGAGAT
257 CACTGAGTCGTGGACTTTGAGAAGAGATTACCACTAAGTCGTGGACTTTGAGAAGAGAT
* *
843764 TGCCACTGAGTCGTGGACTTTGAGAAGAGATTGCTACTGAGTCGTGGACTTTGGGAAGAGATGCC
1 TGCCACTGAGTCGTGGACTTTGAGAAGAGA-TGCCACTGAGTCGTGGACTTTGGGAAAAGATGCC
* * *
843829 ACTGAGTTGTGGACTTTGAAGAAAAATGATGCCACTGAGTCGTGGACTTGGAAGAAAAAAAGGAT
65 ACTAAGTTGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAAGGAT
*
843894 GCTACTGAGTCGTGGACTTAGAAGAGATGCCACTGAGTCGTGGACTTGGAAGAGAAGATGCCACA
130 GCCACTGAGTCGTGGACTTAGAAGAGATGCCACTGAGTCGTGGACTTGGAAGAGAAGATGCCACA
843959 GAGTCGTGGACTTTGAGAAAAGAGATTGCCACTGAGTCGTGGACTTTGGAAGAAAAGGATGCCAC
195 GAGTCGTGGACTTTGAGAAAAGAGATTGCCACTGAGTCGTGGACTTTGGAAGAAAAGGATGCCAC
*
844024 TGAGTCGTGGACTTTGAGAAGAGATTACCACTGAGTCGTGGACTTTGAGAAGAGAT
260 TGAGTCGTGGACTTTGAGAAGAGATTACCACTAAGTCGTGGACTTTGAGAAGAGAT
* * *
844080 TGCCACTGAGTCATGGACTTTGAAGAAAAGATGCCACTGAGTCGTGGACTTTGGGAAAAGACGCC
1 TGCCACTGAGTCGTGGACTTTG-AGAAGAGATGCCACTGAGTCGTGGACTTTGGGAAAAGATGCC
844145 ACTAAGTTGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCATGGACTTGGAAGA
65 ACTAAGTTGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCATGGACTTGGAAGA
844200 GATGCCACTA
Statistics
Matches: 407, Mismatches: 26, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
315 218 0.54
316 133 0.33
317 8 0.02
318 28 0.07
319 20 0.05
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (315 bp):
TGCCACTGAGTCGTGGACTTTGAGAAGAGATGCCACTGAGTCGTGGACTTTGGGAAAAGATGCCA
CTAAGTTGTGGACTTTGAAGAAAAAAGATGCCACTGAGTCATGGACTTGGAAGAAAAAAAGGATG
CCACTGAGTCGTGGACTTAGAAGAGATGCCACTGAGTCGTGGACTTGGAAGAGAAGATGCCACAG
AGTCGTGGACTTTGAGAAAAGAGATTGCCACTGAGTCGTGGACTTTGGAAGAAAAGGATGCCACT
GAGTCGTGGACTTTGAGAAGAGATTACCACTAAGTCGTGGACTTTGAGAAGAGAT
Found at i:845530 original size:6 final size:6
Alignment explanation
Indices: 845519--845576 Score: 59
Period size: 6 Copynumber: 9.8 Consensus size: 6
845509 TTTTGTGTGT
* *
845519 TTTTTG TTTTTG TTTTTG TTTTTG TTGTT- TTTTTA TTTTT- TTTTGTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT-TG
845566 TGTTTT- TTTTT
1 T-TTTTG TTTTT
845577 ACTTTTTCAT
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
5 12 0.26
6 29 0.63
7 2 0.04
8 3 0.07
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (6 bp):
TTTTTG
Found at i:845540 original size:29 final size:27
Alignment explanation
Indices: 845508--845564 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 27
845498 TTATACTCAT
845508 TTTTTGTGTGTTTTTTGT-TTTTGTTTTTG
1 TTTTTGT-TGTTTTTT-TATTTT-TTTTTG
845537 TTTTTGTTGTTTTTTTATTTTTTTTTG
1 TTTTTGTTGTTTTTTTATTTTTTTTTG
845564 T
1 T
845565 GTGTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 8 0.30
28 12 0.44
29 7 0.26
ACGTcount: A:0.02, C:0.00, G:0.16, T:0.82
Consensus pattern (27 bp):
TTTTTGTTGTTTTTTTATTTTTTTTTG
Found at i:845574 original size:22 final size:20
Alignment explanation
Indices: 845507--845576 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 20
845497 TTTATACTCA
*
845507 TTTTTTGTGTGTTTT-TTGTT
1 TTTTTTTTGT-TTTTGTTGTT
845527 TTTGTTTTTGTTTTTGTTGTT
1 TTT-TTTTTGTTTTTGTTGTT
*
845548 TTTTTATTTTTTTTTGTGTGTT
1 TTTTT-TTTGTTTTTGT-TGTT
845570 TTTTTTT
1 TTTTTTT
845577 ACTTTTTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.20
21 26 0.59
22 9 0.20
ACGTcount: A:0.01, C:0.00, G:0.16, T:0.83
Consensus pattern (20 bp):
TTTTTTTTGTTTTTGTTGTT
Found at i:845582 original size:21 final size:20
Alignment explanation
Indices: 845518--845583 Score: 71
Period size: 21 Copynumber: 3.2 Consensus size: 20
845508 TTTTTGTGTG
*
845518 TTTT-TTGTTTTTGTTTTTGT
1 TTTTGTTGTTTTT-TTTTTCT
*
845538 TTTTGTTGTTTTTTTATTTTT
1 TTTTGTTGTTTTTTT-TTTCT
*
845559 TTTTGTGTGTTTTTTTTTACT
1 TTTTGT-TGTTTTTTTTTTCT
845580 TTTT
1 TTTT
845584 CATCATTTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
20 6 0.15
21 25 0.62
22 9 0.22
ACGTcount: A:0.03, C:0.02, G:0.12, T:0.83
Consensus pattern (20 bp):
TTTTGTTGTTTTTTTTTTCT
Found at i:846571 original size:9 final size:9
Alignment explanation
Indices: 846557--846584 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
846547 ATAGTGATAC
846557 GTGAACAGT
1 GTGAACAGT
846566 GTGAACAGT
1 GTGAACAGT
846575 GTGAACAGT
1 GTGAACAGT
846584 G
1 G
846585 AAAATGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.36, T:0.21
Consensus pattern (9 bp):
GTGAACAGT
Found at i:846673 original size:53 final size:53
Alignment explanation
Indices: 846609--846745 Score: 238
Period size: 53 Copynumber: 2.6 Consensus size: 53
846599 CTACTTCCAA
846609 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
* *
846662 TGTATCGATACATATTGTGTGTATCGATACAAATTTGGCTACTGCCAATGTCC
1 TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
*
846715 TGTATCGATACATATTTGTTTGTATCGATAC
1 TGTATCGATACATATTT-TGTGTATCGATAC
846746 TATGCAATTT
Statistics
Matches: 79, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
53 67 0.85
54 12 0.15
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.38
Consensus pattern (53 bp):
TGTATCGATACATATTTTGTGTATCGATACAAATTTGGCTACTGCCAATGACC
Found at i:846851 original size:21 final size:21
Alignment explanation
Indices: 846825--846865 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
846815 GTCAACCTTG
846825 TGTATTAATACCAATA-GTATA
1 TGTATTAATA-CAATACGTATA
*
846846 TGTATTGATACAATACGTAT
1 TGTATTAATACAATACGTAT
846866 TTTTACTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (21 bp):
TGTATTAATACAATACGTATA
Found at i:853949 original size:13 final size:13
Alignment explanation
Indices: 853931--853957 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
853921 AAAATTCCCA
853931 AATGTATCGATAC
1 AATGTATCGATAC
853944 AATGTATCGATAC
1 AATGTATCGATAC
853957 A
1 A
853958 TTGAATAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:854391 original size:24 final size:25
Alignment explanation
Indices: 854359--854408 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
854349 ACTTGAATTT
*
854359 CTTTAATGAATGAAAT-TATGTTTG
1 CTTTAATGAATGAAATAAATGTTTG
* *
854383 CTTTCATGATTGAAATAAATGTTTG
1 CTTTAATGAATGAAATAAATGTTTG
854408 C
1 C
854409 CTTGCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (25 bp):
CTTTAATGAATGAAATAAATGTTTG
Found at i:862406 original size:51 final size:49
Alignment explanation
Indices: 862349--862456 Score: 153
Period size: 51 Copynumber: 2.2 Consensus size: 49
862339 CTAGATCTAC
* *
862349 CGATACATTGAAAAATGTATCAATACATCTGGGTAAAAAAATAGAATGTAT
1 CGATACATTGAAAAATGAATCAATACATCTAGGTAAAAAAA-A-AATGTAT
* * *
862400 CGATACATTGAAAAATGAATCGATACATTTAGGTAAAAACAAAATGTAT
1 CGATACATTGAAAAATGAATCAATACATCTAGGTAAAAAAAAAATGTAT
862449 CGATACAT
1 CGATACAT
862457 GTACTGTTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
49 15 0.29
50 1 0.02
51 36 0.69
ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27
Consensus pattern (49 bp):
CGATACATTGAAAAATGAATCAATACATCTAGGTAAAAAAAAAATGTAT
Found at i:865973 original size:20 final size:20
Alignment explanation
Indices: 865948--866018 Score: 117
Period size: 20 Copynumber: 3.6 Consensus size: 20
865938 AAAAAGATAG
865948 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
865968 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
* *
865988 AATATATCGATACGTTG-AA
1 AATGTATCGATACATTGAAA
866007 AATGTATCGATA
1 AATGTATCGATA
866019 TATCTAGGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
19 13 0.27
20 35 0.73
ACGTcount: A:0.44, C:0.10, G:0.15, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:867071 original size:60 final size:57
Alignment explanation
Indices: 866968--867141 Score: 155
Period size: 60 Copynumber: 3.0 Consensus size: 57
866958 TAGAAAAGTT
* * * *
866968 GCCACCAACTCGTGTGGGCTTTAG-CGAAGGTTGCCA-TCAACTTGTGTGGGCTTTAGAAAG
1 GCCACCGACTTGTGT-GGCTTTAGAAG-AGGTTGCCACT-GACTT-TGTGGGCTTT-GAAAG
867028 GCCACCGACTTGTGTGTGCTTTAGAAGAGGTTGCCACTGAC-TTGTGGGCTTTGAAAAGG
1 GCCACCGACTTGTGTG-GCTTTAGAAGAGGTTGCCACTGACTTTGTGGGCTTTG-AAA-G
* * *
867087 TGCCACTGACTTGTG-GG-TTTTGAA-AGGATGCCACTGA-TTTGTGGGCTTTGAAAG
1 -GCCACCGACTTGTGTGGCTTTAGAAGAGGTTGCCACTGACTTTGTGGGCTTTGAAAG
867141 G
1 G
867142 ATGCCACTAA
Statistics
Matches: 100, Mismatches: 7, Indels: 21
0.78 0.05 0.16
Matches are distributed among these distances:
53 1 0.01
54 1 0.01
55 3 0.03
56 24 0.24
57 7 0.07
58 14 0.14
59 4 0.04
60 44 0.44
61 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (57 bp):
GCCACCGACTTGTGTGGCTTTAGAAGAGGTTGCCACTGACTTTGTGGGCTTTGAAAG
Found at i:867393 original size:28 final size:29
Alignment explanation
Indices: 867035--867392 Score: 380
Period size: 28 Copynumber: 12.6 Consensus size: 29
867025 AAGGCCACCG
* * *
867035 ACTTGTGTGTGCTTTAGAAGAGGTTGCCACTG
1 ACTTGTG-G-GCTTT-GAAAAGGATGCCACTA
*
867067 ACTTGTGGGCTTTGAAAAGG-TGCCACTG
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
* *
867095 ACTTGTGGGTTTTG-AAAGGATGCCACTG
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
*
867123 ATTTGTGGGCTTTG-AAAGGATGCCACTA
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
* *
867151 ACTTGTAGGCTTTGAAAAGG-TACCACTA
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
***
867179 ACTTACAGGCTTTGAAAAGG-TGCCACTA
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
* *
867207 ACTTGTGAGCTTTG-AAAGG-TGTCACT-
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
* * * *
867233 GCTTGTGGGTTTTGAAAAGGGTTGCCACTG
1 ACTTGTGGGCTTTGAAAA-GGATGCCACTA
*
867263 ACTTGTGGGCTCT-AAAAGGATGCCACTA
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
*
867291 ACTTGTGGGCTCTG-AAAGGATGCCACTA
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
867319 ACTTGTGGGCTTTG-AAAGGATGCCACTA
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
* *
867347 ACTTATGGGCTTTGAAAAAG-TGCCACTA
1 ACTTGTGGGCTTTGAAAAGGATGCCACTA
* *
867375 ACTTATGAGCTTTGAAAA
1 ACTTGTGGGCTTTGAAAA
867393 AATATGCCAT
Statistics
Matches: 289, Mismatches: 29, Indels: 20
0.86 0.09 0.06
Matches are distributed among these distances:
26 11 0.04
27 19 0.07
28 211 0.73
29 25 0.09
30 15 0.05
31 1 0.00
32 7 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (29 bp):
ACTTGTGGGCTTTGAAAAGGATGCCACTA
Found at i:868742 original size:10 final size:9
Alignment explanation
Indices: 868727--868791 Score: 60
Period size: 10 Copynumber: 6.8 Consensus size: 9
868717 GCTTTTTGTA
868727 TTGTTTTTT
1 TTGTTTTTT
868736 TTAGTTTTTGT
1 TT-GTTTTT-T
*
868747 TT-TTTTTC
1 TTGTTTTTT
868755 TTGTTTTTTT
1 TTG-TTTTTT
868765 TTGTTTTTTT
1 TTG-TTTTTT
868775 TTGCTTTTTT
1 TTG-TTTTTT
*
868785 CTGTTTT
1 TTGTTTT
868792 ACTTTTTGAG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
8 2 0.04
9 11 0.23
10 32 0.67
11 3 0.06
ACGTcount: A:0.02, C:0.05, G:0.11, T:0.83
Consensus pattern (9 bp):
TTGTTTTTT
Found at i:868750 original size:28 final size:27
Alignment explanation
Indices: 868719--868776 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
868709 GAACCCTCGC
868719 TTTTTGTATTGTTTTTTTTAGTTTTTGT
1 TTTTTGTATTGTTTTTTTTAGTTTTT-T
* * *
868747 TTTTTTTCTTGTTTTTTTTTGTTTTTT
1 TTTTTGTATTGTTTTTTTTAGTTTTTT
868774 TTT
1 TTT
868777 GCTTTTTTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.03, C:0.02, G:0.10, T:0.84
Consensus pattern (27 bp):
TTTTTGTATTGTTTTTTTTAGTTTTTT
Found at i:868782 original size:20 final size:20
Alignment explanation
Indices: 868717--868791 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
868707 TGGAACCCTC
*
868717 GCTTTTTGTATTGTTTTTTTTA
1 GCTTTTT-T-TTGTTTTTTTTT
* *
868739 G-TTTTTGTT-TTTTTTCTT
1 GCTTTTTTTTGTTTTTTTTT
*
868757 GTTTTTTTTTGTTTTTTTTT
1 GCTTTTTTTTGTTTTTTTTT
*
868777 GCTTTTTTCTGTTTT
1 GCTTTTTTTTGTTTT
868792 ACTTTTTGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
18 8 0.18
19 9 0.20
20 21 0.48
21 5 0.11
22 1 0.02
ACGTcount: A:0.03, C:0.05, G:0.12, T:0.80
Consensus pattern (20 bp):
GCTTTTTTTTGTTTTTTTTT
Found at i:872435 original size:13 final size:13
Alignment explanation
Indices: 872417--872441 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
872407 AGATTGCACA
872417 GTATCGATACATT
1 GTATCGATACATT
872430 GTATCGATACAT
1 GTATCGATACAT
872442 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:872454 original size:20 final size:21
Alignment explanation
Indices: 872429--872481 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
872419 ATCGATACAT
**
872429 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
872449 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
872470 TGTATCGATACA
1 TGTATCGATACA
872482 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:872560 original size:13 final size:13
Alignment explanation
Indices: 872542--872567 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
872532 ACACACAATA
872542 TGTATCGATACAT
1 TGTATCGATACAT
872555 TGTATCGATACAT
1 TGTATCGATACAT
872568 CTCAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:872583 original size:33 final size:32
Alignment explanation
Indices: 872522--872589 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
872512 CCTTAACTGT
*
872522 TTGTATCGATACACACAATATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
872554 TTGTATCGATACATCTCAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
872587 TTG
1 TTG
872590 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 13 0.39
33 20 0.61
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:878287 original size:8 final size:8
Alignment explanation
Indices: 878274--878307 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
878264 ATTTGATTAA
878274 ATTTTGTG
1 ATTTTGTG
878282 ATTTTGTG
1 ATTTTGTG
878290 ATTTTGTG
1 ATTTTGTG
878298 ATTTTGTG
1 ATTTTGTG
878306 AT
1 AT
878308 GAATGATGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:878528 original size:13 final size:13
Alignment explanation
Indices: 878510--878534 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
878500 TAGCATTCTC
878510 TGTATCGATACAT
1 TGTATCGATACAT
878523 TGTATCGATACA
1 TGTATCGATACA
878535 AAGGGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:878709 original size:22 final size:21
Alignment explanation
Indices: 878666--878706 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
878656 CAAATTTCTT
878666 GTTTTTCACTTCAAAATACATC
1 GTTTTTCAC-TCAAAATACATC
878688 GTTTTTCA-TCAAAAT-CATC
1 GTTTTTCACTCAAAATACATC
878707 ATCAAAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 7 0.37
22 8 0.42
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (21 bp):
GTTTTTCACTCAAAATACATC
Found at i:879008 original size:20 final size:21
Alignment explanation
Indices: 878968--879019 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
878958 CCTCTAGGTA
*
878968 GCACCCACCAGGTCACGACC-G
1 GCACCC-CCAGGTCACAACCGG
*
878989 GCACCCCCAGGTCGCAACCGG
1 GCACCCCCAGGTCACAACCGG
879010 GCAGCCCCCA
1 GCA-CCCCCA
879020 CACTAGCAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 11 0.41
21 10 0.37
22 6 0.22
ACGTcount: A:0.21, C:0.50, G:0.25, T:0.04
Consensus pattern (21 bp):
GCACCCCCAGGTCACAACCGG
Found at i:880417 original size:22 final size:23
Alignment explanation
Indices: 880385--880429 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
880375 TGAAATTGTT
880385 AAATTATTTTATT-AAGGTGGAGA
1 AAATTATTTTATTAAAGG-GGAGA
880408 AAATT-TTTTATTAAAGGGGAGA
1 AAATTATTTTATTAAAGGGGAGA
880430 GAAAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (23 bp):
AAATTATTTTATTAAAGGGGAGA
Found at i:887709 original size:100 final size:100
Alignment explanation
Indices: 887556--887742 Score: 268
Period size: 100 Copynumber: 1.9 Consensus size: 100
887546 GAAAAAGACG
* *
887556 TCCTGCTCTTTGAGGACTGGAGCATGCCACAAACTCGTGTGGGCTTTAAAAGGAAAAGACGTCCT
1 TCCTGCTCTTTGAGGACTGGAGAATGCCACAAACTCGTGTGGGCTTTAAAAGGAAAAGACGTCAT
* *
887621 ACTCCTTGAGGACTAAAGGGTGAAAGGAGAGAATT
66 ACTCCCTGAGGACTAAAAGGTGAAAGGAGAGAATT
* * * *
887656 TCCTGCTCTTTGAGGACTGG-GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCA
1 TCCTGCTCTTTGAGGACTGGAGAA-TGCCACAAACTCGTGTGGGCTTTAAAAGGAAAAGACGTCA
**
887720 TGTTCCCTGAGGACTAAAAGGTG
65 TACTCCCTGAGGACTAAAAGGTG
887743 CCACCAACTT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
99 2 0.03
100 74 0.97
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (100 bp):
TCCTGCTCTTTGAGGACTGGAGAATGCCACAAACTCGTGTGGGCTTTAAAAGGAAAAGACGTCAT
ACTCCCTGAGGACTAAAAGGTGAAAGGAGAGAATT
Found at i:887799 original size:55 final size:55
Alignment explanation
Indices: 887656--888771 Score: 1543
Period size: 55 Copynumber: 19.9 Consensus size: 55
887646 GGAGAGAATT
*
887656 TCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * ** *
887717 TCATGTTCCCTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
887772 TCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTAGGCTTTAAGAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* * * *
887833 TCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTATAGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* **
887888 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
887943 TCCTGTTCTTTGAGGACTGAAAGGTGCCGCCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
887998 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
888053 TCCTGCTCTTTGAGGACTGAAAAGTACCACCAACTTGTGTGGGCTTTAAGAGGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* * * * *
888114 TCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTTGTATAGGCTTTGAAAGGCT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
888169 TCCTGCTCTTTGAGGACTGAAGGGTGCCACCAACTTGTATAGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * **
888224 TCCTGCTTTTTGAGGACTAAAAAATGCCACCAACTTGTGTGGGCTTTGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAGGCG
* * *
888280 TCCTGTTCTTTGAGGACTGAAAGGTACCGCCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
888335 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
888390 TCCTGCTCTTTGTGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
** *
888445 TTATGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
888500 TCCTGCTCTTTGCGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
888555 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
888610 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
888665 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAAAGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* *
888726 TCCTGCTCTTTGAAGACT-AAAGGTGCCAACAACTTGTGTGGGCTTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
888772 AAAAAGAAAA
Statistics
Matches: 953, Mismatches: 82, Indels: 41
0.89 0.08 0.04
Matches are distributed among these distances:
55 713 0.75
56 52 0.05
60 32 0.03
61 156 0.16
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:888021 original size:26 final size:26
Alignment explanation
Indices: 887989--888074 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
887979 GTGTGGGCTT
887989 TGAAAGGCGTCCTACTCTTTGAGGAC
1 TGAAAGGCGTCCTACTCTTTGAGGAC
* * * *
888015 TGAAAGGTG-CC-ACCAACTTGTGTGGGC
1 TGAAAGGCGTCCTA-C-TCTT-TGAGGAC
*
888042 TTTGAAAGGCGTCCTGCTCTTTGAGGAC
1 --TGAAAGGCGTCCTACTCTTTGAGGAC
888070 TGAAA
1 TGAAA
888075 AGTACCACCA
Statistics
Matches: 44, Mismatches: 9, Indels: 14
0.66 0.13 0.21
Matches are distributed among these distances:
24 1 0.02
25 3 0.07
26 16 0.36
27 5 0.11
28 5 0.11
29 11 0.25
30 3 0.07
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
TGAAAGGCGTCCTACTCTTTGAGGAC
Found at i:888412 original size:26 final size:26
Alignment explanation
Indices: 888325--888413 Score: 72
Period size: 26 Copynumber: 3.3 Consensus size: 26
888315 TGTGTGGGCT
*
888325 TTGAAAGGCGTCCTGCTCTTTGAGGA
1 TTGAAAGGCGTCCTGCTCTTTGTGGA
* * ** * *
888351 CTGAAAGGTG-CCACCAACTTGTGTGGGCT
1 TTGAAAGGCGTCCTGC-TCTT-TGT-GG-A
888380 TTGAAAGGCGTCCTGCTCTTTGTGGA
1 TTGAAAGGCGTCCTGCTCTTTGTGGA
888406 TTGAAAGG
1 TTGAAAGG
888414 TGCCACCAAC
Statistics
Matches: 45, Mismatches: 13, Indels: 10
0.66 0.19 0.15
Matches are distributed among these distances:
25 3 0.07
26 19 0.42
27 4 0.09
28 5 0.11
29 11 0.24
30 3 0.07
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.29
Consensus pattern (26 bp):
TTGAAAGGCGTCCTGCTCTTTGTGGA
Found at i:888578 original size:26 final size:26
Alignment explanation
Indices: 888546--888688 Score: 69
Period size: 27 Copynumber: 5.3 Consensus size: 26
888536 GTGTGGGCTT
888546 TGAAAGGCATCCTGCTCTTTGAGGAC
1 TGAAAGGCATCCTGCTCTTTGAGGAC
** * * *
888572 TGAAAGGTGCCA-CCAACT-TGTGTGGGC
1 TGAAA-G-G-CATCCTGCTCTTTGAGGAC
*
888599 TTTGAAAGGCGTCCTGCTCTTTGAGGAC
1 --TGAAAGGCATCCTGCTCTTTGAGGAC
** * * *
888627 TGAAAGGTGCCA-CCAACT-TGTGTGGGC
1 TGAAA-G-G-CATCCTGCTCTTTGAGGAC
888654 TTTGAAAGGCATCCTGCTCTTTGAGGAC
1 --TGAAAGGCATCCTGCTCTTTGAGGAC
888682 TGAAAGG
1 TGAAAGG
888689 TGCCACCAAC
Statistics
Matches: 81, Mismatches: 22, Indels: 28
0.62 0.17 0.21
Matches are distributed among these distances:
26 20 0.25
27 24 0.30
28 24 0.30
29 13 0.16
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (26 bp):
TGAAAGGCATCCTGCTCTTTGAGGAC
Found at i:888777 original size:60 final size:63
Alignment explanation
Indices: 888658--888811 Score: 251
Period size: 60 Copynumber: 2.5 Consensus size: 63
888648 GTGGGCTTTG
* *
888658 AAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAG-AA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCAACAACTTGTGTGGGCTTTAAAAAGAAA
*
888720 AAA-GCGTCCTGCTCTTTGAAGACT-AAAGGTGCCAACAACTTGTGTGGGCTTTAAAAAGAAA
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCAACAACTTGTGTGGGCTTTAAAAAGAAA
*
888781 AAAGGCGTCCTGCTCTTTGAGGACTGGAAGG
1 AAAGGCGTCCTGCTCTTTGAGGACTGAAAGG
888812 GCTAAAAGAG
Statistics
Matches: 84, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
60 33 0.39
61 24 0.29
62 23 0.27
63 4 0.05
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (63 bp):
AAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCAACAACTTGTGTGGGCTTTAAAAAGAAA
Found at i:895213 original size:76 final size:76
Alignment explanation
Indices: 895066--895292 Score: 323
Period size: 76 Copynumber: 2.9 Consensus size: 76
895056 AAATAAAATC
* * *
895066 AAATAACGGGGTTGGAGTATCCCCGATTATGAGAAAA-TAATATTTTAGAAATAAAACCGAGGTT
1 AAATAACGGGGTTGGAGTATCCCCGA-TA--A-AAAATTGATGTTTTAGAAATAAAACCGGGGTT
*
895130 GGAGTATCCCCTCGG
62 GGAGTATCCCCTCGA
* *
895145 AAATAACGGGGTCT-GAGTATTCCCGATAAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGG
1 AAATAACGGGGT-TGGAGTATCCCCGATAAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGA
895209 GTATCCCCTCGA
65 GTATCCCCTCGA
* *
895221 AAATAACGGGGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCAGGGTTGGAG
1 AAATAACGGGGTTGGAGTATCCCCGATAAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
895286 TATCCCC
66 TATCCCC
895293 GATTGTGAAA
Statistics
Matches: 135, Mismatches: 10, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
75 5 0.04
76 104 0.77
78 2 0.01
79 23 0.17
80 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (76 bp):
AAATAACGGGGTTGGAGTATCCCCGATAAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
TATCCCCTCGA
Found at i:895289 original size:48 final size:49
Alignment explanation
Indices: 895229--895343 Score: 171
Period size: 51 Copynumber: 2.3 Consensus size: 49
895219 GAAAATAACG
*
895229 GGGTTGGAGTATCCCCGA-TGAAAAA-TTGATGTTTTAGAAATAAAACCA
1 GGGTTGGAGTATCCCCGATTGAAAAATTTG-TATTTTAGAAATAAAACCA
*
895277 GGGTTGGAGTATCCCCGATTGTGAAAAATTTGTATTTTAGAAATAAAATCA
1 GGGTTGGAGTATCCCCGA-T-TGAAAAATTTGTATTTTAGAAATAAAACCA
895328 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
895344 TCGGAAATAA
Statistics
Matches: 61, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
48 18 0.30
51 40 0.66
52 3 0.05
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (49 bp):
GGGTTGGAGTATCCCCGATTGAAAAATTTGTATTTTAGAAATAAAACCA
Found at i:895304 original size:127 final size:128
Alignment explanation
Indices: 895173--895473 Score: 435
Period size: 130 Copynumber: 2.3 Consensus size: 128
895163 ATTCCCGATA
* * *
895173 AAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAG
1 AAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGATTGGAG
*
895238 TATCCCCGA-TGAAAAATTGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTGTG
66 TATCCCCGATTGAAAAACTGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTGTG
* * *
895300 AAAAATTTG-TATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGA
1 AAAAA-TTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGATTGGA
* * * *
895364 GTATCCCCGATTGTGAAAAACTGGTGTTTTGGGAATAAAATCAGGGTTGGAGTATCCCCGATTGT
65 GTATCCCCGA-T-TGAAAAACTGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTGT
895429 G
128 G
* * *
895430 AGAAATTGATGCTTTAGAAATAAAATCGGAGTTGGAGTATCCCC
1 AAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
895474 GATTAAGAAA
Statistics
Matches: 153, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
127 64 0.42
128 3 0.02
129 3 0.02
130 83 0.54
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (128 bp):
AAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTCGAAAATAACGGGATTGGAG
TATCCCCGATTGAAAAACTGATGTTTTAGAAATAAAACCAGGGTTGGAGTATCCCCGATTGTG
Found at i:895345 original size:203 final size:206
Alignment explanation
Indices: 894986--895422 Score: 517
Period size: 203 Copynumber: 2.1 Consensus size: 206
894976 GAGATAATAA
* *
894986 CGGGGTTGGAGTATCTCCTCGAAAATACCAAGGTTGAAGTATCCCCGATTATGAAAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGAAAATAACAAGGTTGAAGTATCCCCG--TATGAAAAATCGATGA
*
895051 TTTAGAAATAAAATCAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAAATAATATTTTAGAA
64 TTTAGAAATAAAATC-----ACAGGGTTGGAGTATCCCCGATTATGAGAAAATAATATTTTAGAA
* * *
895116 ATAAAACCGAGGTTGGAGTATCCCCTCGGAAATAACGGGGTCT-GAGTATTCCCGATAAAAAATT
124 ATAAAACAGAGGTTGGAGTATCCCCTCGGAAATAACGGGAT-TGGAGTATCCCCGATAAAAAATT
895180 GATGTTTTAGAAATAAAAC
188 GATGTTTTAGAAATAAAAC
* ** * * *
895199 CGGGGTTGGGGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCG-ATGAAAAATTGATGTTT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACAAGGTTGAAGTATCCCCGTATGAAAAATCGATGATT
* **
895263 TAGAAATAAAA-C-CAGGGTTGGAGTATCCCCGATTGTGA-AAAATTTGTATTTTAGAAATAAAA
66 TAGAAATAAAATCACAGGGTTGGAGTATCCCCGATTATGAGAAAA-TAATATTTTAGAAATAAAA
* * *
895325 TCAG-GGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCCGATTGTGAAAAACTGGT
130 -CAGAGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCCGA---TAAAAAATTGAT
* * *
895389 GTTTTGGGAATAAAAT
191 GTTTTAGAAATAAAAC
*
895405 CAGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
895423 GATTGTGAGA
Statistics
Matches: 195, Mismatches: 23, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
202 5 0.03
203 82 0.42
204 2 0.01
206 38 0.19
209 1 0.01
210 26 0.13
213 41 0.21
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (206 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACAAGGTTGAAGTATCCCCGTATGAAAAATCGATGATT
TAGAAATAAAATCACAGGGTTGGAGTATCCCCGATTATGAGAAAATAATATTTTAGAAATAAAAC
AGAGGTTGGAGTATCCCCTCGGAAATAACGGGATTGGAGTATCCCCGATAAAAAATTGATGTTTT
AGAAATAAAAC
Found at i:895501 original size:51 final size:51
Alignment explanation
Indices: 895359--895501 Score: 180
Period size: 51 Copynumber: 2.8 Consensus size: 51
895349 AATAACGGGA
* * *
895359 TTGGAGTATCCCCGATTGTGAAAAACTGGTGTTTTGGGAATAAAATCAGGG
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGGG
* * *
895410 TTGGAGTATCCCCGATTGTGAGAAATTGATGCTTTAGAAATAAAATC-GGAG
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGG-G
** * *
895461 TTGGAGTATCCCCGATTAAGAAAAATTAACGTTTTGGAAAT
1 TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAAT
895502 GGAACCGGGA
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
50 2 0.03
51 76 0.97
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAATCAGGG
Found at i:895516 original size:51 final size:51
Alignment explanation
Indices: 895354--895526 Score: 179
Period size: 51 Copynumber: 3.4 Consensus size: 51
895344 TCGGAAATAA
* * *
895354 CGGGATTGGAGTATCCCCGATTGTGAAAAACTGGTGTTTTGGGAATAAAATC
1 CGGGATTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAA-C
* * * * *
895406 AGGG-TTGGAGTATCCCCGATTGTGAGAAATTGATGCTTTAGAAATAAAAT
1 CGGGATTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAAC
** * * **
895456 C-GGAGTTGGAGTATCCCCGATTAAGAAAAATTAACGTTTTGGAAATGGAAC
1 CGGGA-TTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAAC
*
895507 CGGGATTGGAGTATTCCCGA
1 CGGGATTGGAGTATCCCCGA
895527 GATGAAAAAT
Statistics
Matches: 98, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
49 2 0.02
51 90 0.92
52 6 0.06
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (51 bp):
CGGGATTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGGAAATAAAAC
Found at i:897850 original size:20 final size:20
Alignment explanation
Indices: 897825--897918 Score: 111
Period size: 20 Copynumber: 4.7 Consensus size: 20
897815 AAAATGCTTG
*
897825 AATGTATCGATACATTGTA-A
1 AATGTATCGATACAATG-AGA
*
897845 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGAGA
* *
897865 AATGTATTGATACAATGAGC
1 AATGTATCGATACAATGAGA
*
897885 CATGTATCGATACAATGCA-A
1 AATGTATCGATACAATG-AGA
897905 AATGTATCGATACA
1 AATGTATCGATACA
897919 TCTAGGTAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
19 1 0.02
20 63 0.97
21 1 0.02
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACAATGAGA
Found at i:897975 original size:13 final size:13
Alignment explanation
Indices: 897957--897982 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
897947 GCAAAGATCG
897957 ATGTATCGATACA
1 ATGTATCGATACA
897970 ATGTATCGATACA
1 ATGTATCGATACA
897983 TTGAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:904892 original size:51 final size:51
Alignment explanation
Indices: 904828--904965 Score: 215
Period size: 51 Copynumber: 2.7 Consensus size: 51
904818 AATTTTAACT
* *
904828 AAATATATCGATACATTGCAAAATGTATCGATACATCTAGG-TAAAAAGACA
1 AAATGTATCGATACATTGAAAAATGTATCGATACATCT-GGATAAAAAGACA
* *
904879 GAATGTATCGATACATTAAAAAATGTATCGATACATCTGGATAAAAAGACA
1 AAATGTATCGATACATTGAAAAATGTATCGATACATCTGGATAAAAAGACA
*
904930 AAATGTATCGATACATTGAAAAATATATCGATACAT
1 AAATGTATCGATACATTGAAAAATGTATCGATACAT
904966 TCATACATGT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
50 2 0.03
51 77 0.97
ACGTcount: A:0.47, C:0.12, G:0.14, T:0.27
Consensus pattern (51 bp):
AAATGTATCGATACATTGAAAAATGTATCGATACATCTGGATAAAAAGACA
Found at i:904905 original size:20 final size:20
Alignment explanation
Indices: 904880--905005 Score: 72
Period size: 20 Copynumber: 5.8 Consensus size: 20
904870 AAAAAGACAG
904880 AATGTATCGATACATTAAAA
1 AATGTATCGATACATTAAAA
904900 AATGTATCGATACATCTGGATAAAAAGACAA
1 AATGTATCGATACA--T---T---AA-A--A
*
904931 AATGTATCGATACATTGAAA
1 AATGTATCGATACATTAAAA
* * *
904951 AATATATCGATACATTCATA
1 AATGTATCGATACATTAAAA
* ***
904971 CATGTATCGATACATTCGTA
1 AATGTATCGATACATTAAAA
*
904991 CATGTATCGATACAT
1 AATGTATCGATACAT
905006 CTGGGTAAAA
Statistics
Matches: 88, Mismatches: 7, Indels: 22
0.75 0.06 0.19
Matches are distributed among these distances:
20 64 0.73
22 2 0.02
23 1 0.01
25 1 0.01
26 1 0.01
28 2 0.02
29 2 0.02
31 15 0.17
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACATTAAAA
Found at i:906361 original size:2 final size:2
Alignment explanation
Indices: 906354--906384 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
906344 TTAAAGGCAT
906354 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
906385 TCTAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:908868 original size:11 final size:11
Alignment explanation
Indices: 908854--908908 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
908844 CAAGTAAGCA
*
908854 AAAAAAGAGAG
1 AAAAAAGAAAG
*
908865 AAAAAAAAAAG
1 AAAAAAGAAAG
908876 -AAAAAGAAAG
1 AAAAAAGAAAG
**
908886 AAAAAAGTGAG
1 AAAAAAGAAAG
*
908897 AAAATAGAAAG
1 AAAAAAGAAAG
908908 A
1 A
908909 TTAAGCTAAA
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
10 9 0.26
11 26 0.74
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (11 bp):
AAAAAAGAAAG
Found at i:913829 original size:20 final size:21
Alignment explanation
Indices: 913795--913834 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
913785 TTATGCATAA
*
913795 TATTTTTTCACTTTT-ATTTT
1 TATTTTTTAACTTTTGATTTT
*
913815 TATTTTTTAATTTTTGATTT
1 TATTTTTTAACTTTTGATTT
913835 CTACTTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (21 bp):
TATTTTTTAACTTTTGATTTT
Found at i:920112 original size:20 final size:21
Alignment explanation
Indices: 920065--920114 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
920055 AATATTGATA
*
920065 CATTGTATCGATACATACTTG
1 CATTGTATCGATACATACATG
*
920086 AATTGTATCGATACATA-ATG
1 CATTGTATCGATACATACATG
920106 CATTGTATC
1 CATTGTATC
920115 AACACATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (21 bp):
CATTGTATCGATACATACATG
Found at i:921846 original size:22 final size:22
Alignment explanation
Indices: 921805--921845 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
921795 TGACATTTTC
921805 AAAAATAAACTAAAGTAAAATT
1 AAAAATAAACTAAAGTAAAATT
*
921827 AAAAATAAATTAAA-TAAAA
1 AAAAATAAACTAAAGTAAAA
921846 AATGAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (22 bp):
AAAAATAAACTAAAGTAAAATT
Found at i:922342 original size:153 final size:154
Alignment explanation
Indices: 922120--922476 Score: 420
Period size: 153 Copynumber: 2.3 Consensus size: 154
922110 TTTATATTGG
* * *
922120 AGGTATCCCTTAAGGGCATTTTCATAATTTTCCTAGAA-CTGAGTCCTAGGTTATCATCGAGTTT
1 AGGTATCCCTTAA-GGTATTTTCATAA-TTTCTTAGAATC-GAGTCCTAGGTTATCATCGAGTCT
* * * *
922184 GCCTTTATGACGAAGGTGGGTGTTTAGGATAGGTTCATCTCATCTAT-ATCCA-TTTTAATTCCT
63 ACCTTTATGACGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAAT-CATTTTTAAGTCCT
* *
922247 TTAAGG-GTATCGAGCACTTCTACGTCGA
127 TT-AGGTATATCGAGCACCTCTACGTCGA
* * *
922275 AGGTATCCCCTAAGGTATTTTCATAATTTCTTAAAATCAAGTCCTAGGTTATCATC-AGGTCTAC
1 AGGTATCCCTTAAGGTATTTTCATAATTTCTTAGAATCGAGTCCTAGGTTATCATCGA-GTCTAC
* *
922339 CTTTATGCCGAAGGTGGGTATTTAGGATATGTTCATCCCATCTATAATCATTTTTTAAGTCCTTT
65 CTTTATGACGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCA-TTTTTAAGTCCTTT
* *
922404 AGGTATATCGGGTACCTCTACGTCGA
129 AGGTATATCGAGCACCTCTACGTCGA
* * **
922430 AGATATCCCTTAGGGGTATTTTTGTAATTT-TTAGAATCGAGTCCTAG
1 AGGTATCCCTTA-AGGTATTTTCATAATTTCTTAGAATCGAGTCCTAG
922477 TTCATCACTC
Statistics
Matches: 172, Mismatches: 23, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
152 1 0.01
153 72 0.42
154 18 0.10
155 67 0.39
156 14 0.08
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (154 bp):
AGGTATCCCTTAAGGTATTTTCATAATTTCTTAGAATCGAGTCCTAGGTTATCATCGAGTCTACC
TTTATGACGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAATCATTTTTAAGTCCTTTAG
GTATATCGAGCACCTCTACGTCGA
Found at i:924653 original size:13 final size:13
Alignment explanation
Indices: 924635--924659 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
924625 CTTAGGACAA
924635 TGTATCGATACAT
1 TGTATCGATACAT
924648 TGTATCGATACA
1 TGTATCGATACA
924660 ATGTGCAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:925762 original size:33 final size:33
Alignment explanation
Indices: 925697--925765 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 33
925687 TCGGTTAAGA
* * *
925697 GAACTAAAGTTCTCATCCATGCACTGCAAAAGT
1 GAACTAAAGTGCTCATCCACGCACTACAAAAGT
* *
925730 GAACTAAAGTGCTCATCCACGCGCTACGAAAGT
1 GAACTAAAGTGCTCATCCACGCACTACAAAAGT
925763 GAA
1 GAA
925766 GTGATCAACT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.20
Consensus pattern (33 bp):
GAACTAAAGTGCTCATCCACGCACTACAAAAGT
Found at i:927269 original size:13 final size:13
Alignment explanation
Indices: 927250--927289 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
927240 ATAGTAACCC
927250 ATGTATTGATACA
1 ATGTATTGATACA
*
927263 TTGTATTGATACA
1 ATGTATTGATACA
*
927276 ATGTATCGATACA
1 ATGTATTGATACA
927289 A
1 A
927290 AGAACATTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (13 bp):
ATGTATTGATACA
Found at i:931123 original size:79 final size:79
Alignment explanation
Indices: 930992--931188 Score: 209
Period size: 79 Copynumber: 2.5 Consensus size: 79
930982 AATAACAGGG
* * * ** * *
930992 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCTCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTTA
*
931055 GAAAAAAAAATCGGGA
64 GAAAAAAAAACCGGGA
* *
931071 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGA
* * * *
931136 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* * *
931150 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCC
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCC
931189 ACGATGAAAT
Statistics
Matches: 99, Mismatches: 17, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
78 7 0.07
79 92 0.93
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (79 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGA
AAAAAAAACCGGGA
Found at i:931185 original size:28 final size:28
Alignment explanation
Indices: 931145--931216 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
931135 GGAATAAAGC
* ** *
931145 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCACGAGGAAATAA
*
931173 CGGGGTTGGAGTATCCACGATGAAATAA
1 CGGGGTTGGAGTATCCACGAGGAAATAA
*
931201 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
931217 TCGATTGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.25, C:0.18, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCACGAGGAAATAA
Found at i:931274 original size:52 final size:52
Alignment explanation
Indices: 931205--931542 Score: 169
Period size: 52 Copynumber: 6.4 Consensus size: 52
931195 AAATAACGAG
*
931205 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** * *
931257 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * *
931310 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
* * **** * * *
931361 GTTGGAGTATCCCC--TCG-AAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
* *
931416 GTTAGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATT-G-GTATTTTTGGAAATAAAATCGGA
* * * * *
931471 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
* *
931522 GTTGGAATATCCTCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
931543 GAGAATTGAT
Statistics
Matches: 213, Mismatches: 45, Indels: 56
0.68 0.14 0.18
Matches are distributed among these distances:
48 3 0.01
49 2 0.01
50 2 0.01
51 37 0.17
52 79 0.37
53 20 0.09
54 17 0.08
55 42 0.20
56 2 0.01
57 4 0.02
58 4 0.02
59 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:931393 original size:28 final size:28
Alignment explanation
Indices: 931348--931429 Score: 89
Period size: 27 Copynumber: 3.0 Consensus size: 28
931338 AGTGTTTTAG
* *
931348 CGATAAA-ACCGGAGTTGGAGTATCCCC
1 CGATAAATAACGGGGTTGGAGTATCCCC
931375 TCGA-AAATAACGGGGTTGGAGTAT-CCC
1 -CGATAAATAACGGGGTTGGAGTATCCCC
* * *
931402 CGATGATTAACGGGGTTAGAGTATCCCC
1 CGATAAATAACGGGGTTGGAGTATCCCC
931430 GATTGTGAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 23 0.50
28 20 0.43
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (28 bp):
CGATAAATAACGGGGTTGGAGTATCCCC
Found at i:931477 original size:55 final size:51
Alignment explanation
Indices: 931416--931547 Score: 149
Period size: 51 Copynumber: 2.5 Consensus size: 51
931406 GATTAACGGG
* *
931416 GTTAGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGGA
1 GTTAGAGTATCCCCGATTGTG-AGAAATTAGTG---TTTTGAAAATAAAATCGGA
*
931471 GTTAGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTAGAGTATCCCCGATTGTGAG-AAATTAGTGTTTTGAAAATAAAATCGGA
* * *
931522 GTTGGAATATCCTCGATTGTGGAGAA
1 GTTAGAGTATCCCCGATTGT-GAGAA
931548 TTGATAAAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
51 34 0.51
52 2 0.03
53 4 0.06
54 8 0.12
55 19 0.28
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (51 bp):
GTTAGAGTATCCCCGATTGTGAGAAATTAGTGTTTTGAAAATAAAATCGGA
Found at i:933929 original size:33 final size:33
Alignment explanation
Indices: 933885--933951 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
933875 AAAATTTCCA
* ***
933885 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTAACGATACAAAGAAAAATGTATCGATAC
*
933918 AATGTAACGATACACAGAAAAATGTATCGATAC
1 AATGTAACGATACAAAGAAAAATGTATCGATAC
933951 A
1 A
933952 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.45, C:0.16, G:0.15, T:0.24
Consensus pattern (33 bp):
AATGTAACGATACAAAGAAAAATGTATCGATAC
Found at i:933995 original size:19 final size:18
Alignment explanation
Indices: 933971--934070 Score: 103
Period size: 19 Copynumber: 5.9 Consensus size: 18
933961 CAGTAGCTAA
933971 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
933990 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
934005 -T-TGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
934022 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
934037 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
934054 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
934071 TCGTTGAATT
Statistics
Matches: 69, Mismatches: 0, Indels: 25
0.73 0.00 0.27
Matches are distributed among these distances:
13 22 0.32
14 2 0.03
16 4 0.06
18 5 0.07
19 36 0.52
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:934011 original size:13 final size:13
Alignment explanation
Indices: 933993--934049 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
933983 ACAATACTTA
933993 TGTATCGATACAT
1 TGTATCGATACAT
934006 TGTATCGATACAATACTT
1 TGTATCGATAC---A--T
934024 ATGTATCGATACAT
1 -TGTATCGATACAT
934038 TGTATCGATACA
1 TGTATCGATACA
934050 AAACTTATGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:934015 original size:32 final size:32
Alignment explanation
Indices: 933974--934068 Score: 181
Period size: 32 Copynumber: 3.0 Consensus size: 32
933964 TAGCTAATTA
933974 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAATACTTATGTATCGATACAT
934006 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAATACTTATGTATCGATACAT
*
934038 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAATACTTATGTATCGATACA
934069 AATCGTTGAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 62 1.00
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.36
Consensus pattern (32 bp):
TGTATCGATACAATACTTATGTATCGATACAT
Found at i:935004 original size:55 final size:55
Alignment explanation
Indices: 934909--936623 Score: 1962
Period size: 55 Copynumber: 30.3 Consensus size: 55
934899 ATAAAGTGTA
* * * * * * *
934909 TCCTTCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
934964 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * **
935019 TCTTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
** * *
935080 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
935135 TCCTGCTTTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * **
935190 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACCTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
** * * *
935251 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTATGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
935306 CCCTGCTCTTTGAGGACTGGAAA--TACCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
**
935360 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* ** * *
935421 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
935476 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* **
935531 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* ** * *
935592 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
935647 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* **
935702 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* ** * *
935763 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
935818 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
935873 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
935928 TCCTGCTC-TTCAGGGACTGAAAGGTGCCACCAACTTGTGTGCGCTTTGAAAGGTG
1 TCCTGCTCTTTGA-GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
**
935983 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* ** * *
936044 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
936099 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* **
936154 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* ** * * *
936215 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTTGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
936270 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* **
936325 TCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* * ** * *
936386 TCTTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
936441 TCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
936496 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * * *
936551 TCCTGCTCTTCGGGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
936606 TCCTGCTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
936624 AAAAAGCGGA
Statistics
Matches: 1428, Mismatches: 159, Indels: 146
0.82 0.09 0.08
Matches are distributed among these distances:
53 4 0.00
54 73 0.05
55 919 0.64
56 45 0.03
57 10 0.01
60 32 0.02
61 345 0.24
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:935068 original size:29 final size:29
Alignment explanation
Indices: 934981--935069 Score: 73
Period size: 29 Copynumber: 3.2 Consensus size: 29
934971 CTTTGAGGAC
934981 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
*** *
935010 T-AAGAGGTGTCTTGC-TCTT-TG-GGGAC--
1 TGAA-AGGTG-CCACCAACTTGTGTGGG-CTT
935036 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
935065 TGAAA
1 TGAAA
935070 AGAAAAAGCA
Statistics
Matches: 43, Mismatches: 8, Indels: 18
0.62 0.12 0.26
Matches are distributed among these distances:
25 2 0.05
26 9 0.21
27 8 0.19
28 8 0.19
29 14 0.33
30 2 0.05
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.29
Consensus pattern (29 bp):
TGAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:935140 original size:171 final size:172
Alignment explanation
Indices: 934908--936601 Score: 2170
Period size: 171 Copynumber: 9.9 Consensus size: 172
934898 AATAAAGTGT
* * * * *
934908 ATCCTTCTCATTGAGGAGT-AAAAAGTGCCACCAA-CTCGTGTGGGCTTTGAAAGGCGTCCTGCT
1 ATCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACCT-GTGTGGGCTTTAAAAGGTGTCCTGCT
* *
934971 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCTTGCTCTTTGGGGA
64 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGA
935035 CTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
129 CTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
*
935079 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTTT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * *
935144 TTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGGGGAC
66 TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGAC
*
935207 TGAAAGGTGCCACCAACCTGTGTGGGCTTTGAAAAGAAAAAGC
130 TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* *
935250 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTATGGGCTTTAAAAGGTGCCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* *
935315 TTGAGGACTGGAAA--TACCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGGAC
66 TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGAC
935377 TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
130 TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
*
935420 ATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
*
935485 TTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACT
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGACT
*
935549 GGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
131 GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
*
935591 ATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
*
935656 TTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACT
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGACT
*
935720 GGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
131 GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
*
935762 ATCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
*
935827 TTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGAGGACT
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGACT
* *
935891 GGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAG-----GT
131 -GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* * ** * * *
935927 GTCCTGCTC-TTCAGGGACTGAAAGGTGCCACCAACTTGTGTGCGCTTTGAAAGGTGTCCTGCTC
1 ATCCTGCTCTTTGA-GGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTC
* **
935991 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTG
65 TTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAG---AGGTGTCCTGCTCTTTG
* ** * *
936056 AGGACTAAAAAATGCCACCAACCTGTGTGGGCTTT-AAAAG-----GT
125 AGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* * ** * *
936098 GTCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * **
936163 TTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGA
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAG---AGGTGTCCTGCTCTTTGA
* ** * * *
936228 GGACTAAAAAATGCCACCAACCTGTGTTGGCTTT-AAAAG-----GT
126 GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* * ** * *
936269 GTCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * ** *
936334 TTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCTTGCTCTTTGA
66 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAAG---AGGTGTCCTGCTCTTTGA
* ** * *
936399 GGACTAAAAAATGCCACCAACCTGTGTGGGCTTT-AAAAG-----GT
126 GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* * ** * *
936440 GTCCTGCTCTTTGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * *
936505 TTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAA-AGGTGTCCTGCTCTTCGGGGAC
66 TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGAC
*
936568 TGAAAGGTGCCACCAACTTTTGTGGGCTTTGAAA
130 TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
936602 GGCGTCCTGC
Statistics
Matches: 1444, Mismatches: 60, Indels: 43
0.93 0.04 0.03
Matches are distributed among these distances:
164 3 0.00
165 132 0.09
166 3 0.00
168 3 0.00
169 7 0.00
170 168 0.12
171 1106 0.77
172 22 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (172 bp):
ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAGAGGTGTCCTGCTCTTTGAGGACT
GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
Found at i:935313 original size:226 final size:222
Alignment explanation
Indices: 934909--936623 Score: 2001
Period size: 226 Copynumber: 7.6 Consensus size: 222
934899 ATAAAGTGTA
* * * * * *
934909 TCCTTCTCATTGAGGAGTA-AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTAGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* *
934973 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAGAGGTGTCTTGCTCTTTGGGGAC
65 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGGTGTCCTGCTCTTTGAGGAC
**
935036 TGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTGAA
130 TGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG---GTGC--CCTGCTCTTTGAGGACTGAA
*
935101 AAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
189 AAATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
935135 TCCTGCTTTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
* * * **
935200 TGGGGACTGAAAGGTGCCACCAACCTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAG
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG---AGGTGTCCTGCTCTTTGAG
** * * *
935265 GACTGAAAAATGCCACCAACCTGTATGGGCTTTAAAAGGTGCCCTGCTCTTTGAGGACTG-GAAA
127 GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGCCCTGCTCTTTGAGGACTGAAAAA
* *
935329 TACCACCAACTTGTGTGGGCTTTGAAAGGTG
192 TGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* **
935360 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCC
1 TCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAAAG-----GTGTCC
* ** *
935424 TGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTT-AAA-AGGTGTCCTGCTCTTT
59 TGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGGTGTCCTGCTCTTT
* * * *
935487 GAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGAGGACTGGA
124 GAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGCCCTGCTCTTTGAGGACTGAA
** **
935552 AGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
189 AAATGCCACCAACTTGTGTGGGCTTT-AAAAG-----GTG
* *
935592 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
*
935657 TGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAGAGGTGTCCTGCTCTTTGAGGACT
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGGTGTCCTGCTCTTTGAGGACT
* ** *
935720 GGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAA
131 GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG---GTGC--CCTGCTCTTTGAGGACTGAAA
*
935785 AATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
190 AATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
935818 TCCTGCTCTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* *
935882 TTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAA-AGGTGTCCTGCTC-TTCAGGG
65 TTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGGTGTCCTGCTCTTTGA-GG
* * * **
935943 ACTGAAAGGTGCCACCAACTTGTGTGCGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAGGT
128 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGCCCTGCTCTTTGAGGACTGAAAAAT
**
936008 GCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
193 GCCACCAACTTGTGTGGGCTTT-AAAAG-----GTG
* *
936044 TCCTGCTCTTTGAGGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
*
936109 TGAGGATTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAGAGGTGTCCTGCTCTTTGAGGACT
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGGTGTCCTGCTCTTTGAGGACT
* ** *
936172 GGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGACTAAAA
131 GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG---GTGC--CCTGCTCTTTGAGGACTGAAA
* *
936237 AATGCCACCAACCTGTGTTGGCTTTAAAAGGTG
190 AATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
* * *
936270 TCCTGCTCTTTGAGGA-TTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTAGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* * ** *
936334 TTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCTTGCTCTTTGA
65 TTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAG---AGGTGTCCTGCTCTTTGA
* ** * * * *
936399 GGACTAAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGAAAG
126 GGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGCCCTGCTCTTTGAGGACTGAAAA
* *
936464 GTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
191 ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
*
936496 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
* * * * * *
936561 CGGGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTT-GAA-AGGCGTCCTGCTCTTTGGGGACT
66 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGGTGTCCTGCTCTTTGAGGACT
936624 AAAAAGCGGA
Statistics
Matches: 1280, Mismatches: 152, Indels: 120
0.82 0.10 0.08
Matches are distributed among these distances:
220 61 0.05
221 5 0.00
222 1 0.00
224 6 0.00
225 163 0.13
226 715 0.56
227 34 0.03
228 3 0.00
229 9 0.01
230 2 0.00
231 69 0.05
232 209 0.16
233 3 0.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (222 bp):
TCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAGGTGTCCTGCTCTTTGAGGACT
GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTGCCCTGCTCTTTGAGGACTGAAAAATGCC
ACCAACTTGTGTGGGCTTTAAAAGGTG
Found at i:937605 original size:13 final size:12
Alignment explanation
Indices: 937581--937639 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
937571 CTTTTCTCTC
*
937581 TTTTTCTTTGTT
1 TTTTTTTTTGTT
937593 TTGTTTTTTTGTT
1 TT-TTTTTTTGTT
**
937606 TTTTTTTTCCTT
1 TTTTTTTTTGTT
* **
937618 TCTTTTTTACTT
1 TTTTTTTTTGTT
937630 TTTTTTTTTG
1 TTTTTTTTTG
937640 AAGAGAAGGT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
12 27 0.71
13 11 0.29
ACGTcount: A:0.02, C:0.08, G:0.07, T:0.83
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:938898 original size:28 final size:28
Alignment explanation
Indices: 938817--938898 Score: 96
Period size: 28 Copynumber: 2.9 Consensus size: 28
938807 TTTTGGAGAT
*
938817 AATAACGAGGTTGGAGTGTTCCCTCG--GA
1 AATAACGAGGTTGGAGT-AT-CCTCGATGA
* * *
938845 AGTAACGGGGTTGGAGTATCCCCGATGA
1 AATAACGAGGTTGGAGTATCCTCGATGA
938873 AATAACGAGGTTGGAGTATCCTCGAT
1 AATAACGAGGTTGGAGTATCCTCGAT
938899 TGTGAAAAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 4 0.09
27 1 0.02
28 40 0.89
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
AATAACGAGGTTGGAGTATCCTCGATGA
Found at i:939038 original size:51 final size:51
Alignment explanation
Indices: 938881--939216 Score: 182
Period size: 51 Copynumber: 6.4 Consensus size: 51
938871 GAAATAACGA
* * *
938881 GGTTGGAGTATCCTCGATTGTGAAAAATT-AGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGA-TA-TTTTGAAAATAAAATCGG
** * * * * * *
938933 AATTGGAGTATCCCCGATTAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAAATTGATATTTTGAAAATAAAATCGG
**
938986 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTGAAAATAATGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTGAAAATAAAATCGG
* *** ** *
939037 GGTTGGAGTATCCCC--TCA-GAAATAACGGGGTTGGAGTATCCCCGATGAT-TAA-CGG
1 GGTTGGAGTATCCCCGATTATGAAA-AA-----TT-GA-TAT-TTTGAAAATAAAATCGG
* * * * *
939092 GGTTGGAGTGTCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAA-AAA-T--TGATATTTTGAAAATAAAATCGG
* * *
939147 AGTTGGAGTATCCCCGATTAT-AGAAAATTAATATTTTGAAAGTAAAATCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTGATATTTTGAAAATAAAATCGG
* * *
939198 AGTTGGAATATCCTCGATT
1 GGTTGGAGTATCCCCGATT
939217 GTGGAGAATT
Statistics
Matches: 210, Mismatches: 53, Indels: 43
0.69 0.17 0.14
Matches are distributed among these distances:
48 4 0.02
49 4 0.02
51 74 0.35
52 16 0.08
53 36 0.17
54 19 0.09
55 42 0.20
56 4 0.02
57 5 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTGAAAATAAAATCGG
Found at i:939097 original size:27 final size:28
Alignment explanation
Indices: 939034--939109 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
939024 AAAATAATGT
*
939034 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
939062 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
939089 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
939110 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:941595 original size:13 final size:13
Alignment explanation
Indices: 941577--941602 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
941567 ACAAAGATCC
941577 ATGTATCGATACA
1 ATGTATCGATACA
941590 ATGTATCGATACA
1 ATGTATCGATACA
941603 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:941598 original size:33 final size:33
Alignment explanation
Indices: 941556--941622 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
941546 AAAATTTCCA
***
941556 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
941589 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
941622 A
1 A
941623 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:941666 original size:19 final size:18
Alignment explanation
Indices: 941642--941709 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
941632 CAGTAGCCAA
941642 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
*
941661 TTATGTATTGATAC--A-
1 TTATGTATCGATACAAAC
941676 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
941693 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
941710 TTGTTGAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
13 10 0.24
14 1 0.02
16 2 0.05
18 4 0.10
19 24 0.59
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:941686 original size:32 final size:32
Alignment explanation
Indices: 941645--941707 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
941635 TAGCCAATTA
* *
941645 TGTATCGATACAATACTTATGTATTGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
941677 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
941708 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.37
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:941771 original size:21 final size:21
Alignment explanation
Indices: 941745--941822 Score: 115
Period size: 21 Copynumber: 3.8 Consensus size: 21
941735 GTTGGGACCC
941745 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGTAGAA
941766 TGTATCGATACATTTGT-GAA
1 TGTATCGATACATTTGTAGAA
* *
941786 TGTATCGATACA-TTCTACAAA
1 TGTATCGATACATTTGTA-GAA
941807 TGTATCGATACATTTG
1 TGTATCGATACATTTG
941823 GATTTTTTTT
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
19 3 0.06
20 15 0.29
21 31 0.61
22 2 0.04
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTTGTAGAA
Found at i:941809 original size:41 final size:41
Alignment explanation
Indices: 941745--941822 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
941735 GTTGGGACCC
* *
941745 TGTATCGATACATTTGTAGAATGTATCGATACATTTGTGAA
1 TGTATCGATACATTTCTAAAATGTATCGATACATTTGTGAA
941786 TGTATCGATACA-TTCTACAAATGTATCGATACATTTG
1 TGTATCGATACATTTCTA-AAATGTATCGATACATTTG
941823 GATTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 4 0.12
41 30 0.88
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (41 bp):
TGTATCGATACATTTCTAAAATGTATCGATACATTTGTGAA
Found at i:941841 original size:7 final size:7
Alignment explanation
Indices: 941824--941869 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
941814 ATACATTTGG
941824 ATTTTTT
1 ATTTTTT
941831 -TTTTTT
1 ATTTTTT
941837 ATTTTTT
1 ATTTTTT
941844 ATTTTTT
1 ATTTTTT
941851 A--TTTT
1 ATTTTTT
941856 ATTTTTT
1 ATTTTTT
941863 ATTTTTT
1 ATTTTTT
941870 TAAAAAAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
5 5 0.14
6 6 0.17
7 25 0.69
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
ATTTTTT
Found at i:941843 original size:12 final size:12
Alignment explanation
Indices: 941826--941870 Score: 63
Period size: 12 Copynumber: 3.6 Consensus size: 12
941816 ACATTTGGAT
941826 TTTTTTTTTTTA
1 TTTTTTTTTTTA
941838 TTTTTTATTTTTTA
1 -TTTTT-TTTTTTA
*
941852 TTTTATTTTTTA
1 TTTTTTTTTTTA
941864 TTTTTTT
1 TTTTTTT
941871 AAAAAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 13 0.45
13 9 0.31
14 7 0.24
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (12 bp):
TTTTTTTTTTTA
Found at i:941848 original size:19 final size:19
Alignment explanation
Indices: 941826--941870 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
941816 ACATTTGGAT
941826 TTTTTTTTTTTATTTTTTA
1 TTTTTTTTTTTATTTTTTA
*
941845 TTTTTTATTTTATTTTTTA
1 TTTTTTTTTTTATTTTTTA
941864 TTTTTTT
1 TTTTTTT
941871 AAAAAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (19 bp):
TTTTTTTTTTTATTTTTTA
Found at i:942550 original size:55 final size:55
Alignment explanation
Indices: 942467--943437 Score: 1250
Period size: 55 Copynumber: 17.3 Consensus size: 55
942457 ATAAAGTGTA
* * * ** * ** *
942467 TCCTGCTCATTGAGGAGTAAAAAATGCCACAAACACGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
942522 TCCTACTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
942577 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
942632 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
942687 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
** *
942742 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGTA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
*
942803 TCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* *
942858 TCCTGCTCTTTGAGGATTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGT------G
* *
942919 TCCTGCTCTTTGAGGTACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGG-ACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGTG
* * *
942981 TCCTGCTCTTTGGGGAC-AAAAGGTGCCACCAACTTGTGTGGGCTTTGAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
943035 TCCTACTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
943090 TCCTGCTCTTTGAGGATTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
943145 TCCTGCTCTTTGAGGACTGGAAA-ATGCTACCAACTTGGGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
943200 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
943255 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
943310 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
943365 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
943420 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
943438 AAAAAGCGGA
Statistics
Matches: 831, Mismatches: 52, Indels: 66
0.88 0.05 0.07
Matches are distributed among these distances:
54 34 0.04
55 632 0.76
56 22 0.03
59 4 0.00
60 26 0.03
61 64 0.08
62 43 0.05
67 2 0.00
68 4 0.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:943112 original size:26 final size:26
Alignment explanation
Indices: 943083--943160 Score: 68
Period size: 29 Copynumber: 2.9 Consensus size: 26
943073 GTGGGCTTTG
943083 AAAGGTGTCCTGCTCTTTGAGGATTA
1 AAAGGTGTCCTGCTCTTTGAGGATTA
** * * *
943109 AAAGGTG-CCACCAACTTGTGTGGGCTTTA
1 AAAGGTGTCCTGC-TCTT-TG-AGG-ATTA
943138 AAAGGTGTCCTGCTCTTTGAGGA
1 AAAGGTGTCCTGCTCTTTGAGGA
943161 CTGGAAAATG
Statistics
Matches: 37, Mismatches: 10, Indels: 10
0.65 0.18 0.18
Matches are distributed among these distances:
25 3 0.08
26 10 0.27
27 4 0.11
28 4 0.11
29 13 0.35
30 3 0.08
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (26 bp):
AAAGGTGTCCTGCTCTTTGAGGATTA
Found at i:944429 original size:15 final size:15
Alignment explanation
Indices: 944406--944461 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
944396 CTTAAGCAGA
*
944406 TTTTTTTTTTCTTTG
1 TTTTTTTTTTTTTTG
*
944421 TTTTGTTTTTTTTTGG
1 TTTT-TTTTTTTTTTG
944437 TTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTG
*
944452 CTTTTTTTTT
1 TTTTTTTTTT
944462 GAAGAGAAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
15 23 0.64
16 13 0.36
ACGTcount: A:0.00, C:0.04, G:0.09, T:0.88
Consensus pattern (15 bp):
TTTTTTTTTTTTTTG
Found at i:956990 original size:78 final size:78
Alignment explanation
Indices: 956861--957058 Score: 211
Period size: 79 Copynumber: 2.5 Consensus size: 78
956851 AATAACAGGG
* * * ** * *
956861 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCTCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTTA
*
956924 GAAAAAAAATCGGGA
64 GAAAAAAAACCGGGA
*
956939 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATA-TTTAG
* * * *
957004 GAATAAAGCCGGGG
65 AAAAAAAACCGGGA
* * *
957018 TTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCC
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCC
957059 GATGAAATAA
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
77 7 0.07
78 44 0.44
79 50 0.50
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (78 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGA
AAAAAAACCGGGA
Found at i:957053 original size:28 final size:28
Alignment explanation
Indices: 957013--957084 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
957003 GGAATAAAGC
** *
957013 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
957041 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
957069 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
957085 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:957142 original size:52 final size:52
Alignment explanation
Indices: 957073--957410 Score: 187
Period size: 52 Copynumber: 6.4 Consensus size: 52
957063 AAATAACGAG
*
957073 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
** * ** * *
957125 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * *
957178 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
* **** * * *
957229 GTTGGAGTATCCCC--TCG-GAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
*
957284 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATT-G-GTATTTTTGGAAATAAAATCGGA
* * * * *
957339 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
* *
957390 GTTGGAATATCCTCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
957411 GAGAATTGAT
Statistics
Matches: 215, Mismatches: 43, Indels: 56
0.68 0.14 0.18
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 2 0.01
51 37 0.17
52 79 0.37
53 20 0.09
54 17 0.08
55 42 0.20
56 2 0.01
57 4 0.02
58 5 0.02
59 1 0.00
ACGTcount: A:0.31, C:0.12, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:957269 original size:28 final size:27
Alignment explanation
Indices: 957229--957299 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
957219 TAAAACCGGA
**
957229 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCGAGG-AATAACGGG
* *
957257 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCGAGGAATAACGGG
957284 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
957300 TTGTGAAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (27 bp):
GTTGGAGTATCCCCGAGGAATAACGGG
Found at i:957312 original size:107 final size:105
Alignment explanation
Indices: 956959--957352 Score: 318
Period size: 107 Copynumber: 3.7 Consensus size: 105
956949 CCTTCGAAAA
* * * * * * *
956959 TAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTT-GGAATAAAACCGGAGTTGGAG
* *
957024 TATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAA
65 TATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-AT
* * * *
957066 TAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGA
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTA-TTTTGG-AATAAAACCGGAGTTGGA
* * ** * ** **
957131 GTAT-CCC-C-G-ATTAAAGGAAAATTGGCGT-T--TTGAAAAT
64 GTATCCCCTCGGAAATAACGG--GGTTGGAGTATCCCCGATGAT
* * * *
957168 AAAACCAGGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG-ATAAAACCGGAGTT
1 -TAA-CGGGGTTGGAGTATCCCCGATTGT-GAAAAATTAGTATTTT-G-GAATAAAACCGGAGTT
957232 GGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
61 GGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
* * *
957277 TAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGGAGTT
1 TAACGGGGTTGGAGTATCCCCGATTGTGAA-AAATT--AG-TATTTTGG-AATAAAACCGGAGTT
*
957342 AGAGTATCCCC
61 GGAGTATCCCC
957353 GATTATAGAA
Statistics
Matches: 220, Mismatches: 45, Indels: 41
0.72 0.15 0.13
Matches are distributed among these distances:
102 1 0.00
103 4 0.02
104 50 0.23
105 16 0.07
106 18 0.08
107 65 0.30
108 32 0.15
109 6 0.03
110 28 0.13
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (105 bp):
TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTGGAATAAAACCGGAGTTGGAGT
ATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
Found at i:957347 original size:55 final size:51
Alignment explanation
Indices: 957288--957415 Score: 141
Period size: 51 Copynumber: 2.4 Consensus size: 51
957278 AACGGGGTTG
* *
957288 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTGTG-AGAAATTAGTG---TTTTGAAAATAAAATCGGAGTTA
* *
957343 GAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTGTGAG-AAATTAGTGTTTTGAAAATAAAATCGGAGTTA
* *
957394 GAATATCCTCGATTGTGGAGAA
1 GAGTATCCCCGATTGT-GAGAA
957416 TTGATAAACT
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
51 34 0.54
52 2 0.03
53 4 0.06
54 8 0.13
55 15 0.24
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (51 bp):
GAGTATCCCCGATTGTGAGAAATTAGTGTTTTGAAAATAAAATCGGAGTTA
Found at i:959781 original size:13 final size:13
Alignment explanation
Indices: 959763--959788 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
959753 AAAAAGATCC
959763 ATGTATCGATACA
1 ATGTATCGATACA
959776 ATGTATCGATACA
1 ATGTATCGATACA
959789 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:959852 original size:19 final size:18
Alignment explanation
Indices: 959828--959895 Score: 74
Period size: 19 Copynumber: 3.9 Consensus size: 18
959818 CAGTAGCTAA
959828 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
959847 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
959862 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
*
959879 TTATGTATCAATACAAA
1 TTATGTATCGATACAAA
959896 TCGTTGAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.10
19 24 0.57
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Done.