Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold160
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5021213
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 92036 characters in sequence are not A, C, G, or T
File 29 of 30
Found at i:4772779 original size:17 final size:18
Alignment explanation
Indices: 4772749--4772782 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
4772739 ATAAATGTAA
4772749 TAAAATTATTAAATATAT
1 TAAAATTATTAAATATAT
4772767 TAAAATT-TTAAATATA
1 TAAAATTATTAAATATA
4772783 AATATGATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TAAAATTATTAAATATAT
Found at i:4772867 original size:21 final size:21
Alignment explanation
Indices: 4772833--4772885 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 21
4772823 AATACTTAAA
4772833 TATATTAGGTAATATTTACTATAG
1 TATATTA--TAATATTTACTA-AG
*
4772857 TAT-TTATAATATTTATTAAG
1 TATATTATAATATTTACTAAG
4772877 TATATTATA
1 TATATTATA
4772886 TTAGTGTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 5 0.19
21 16 0.59
23 3 0.11
24 3 0.11
ACGTcount: A:0.40, C:0.02, G:0.08, T:0.51
Consensus pattern (21 bp):
TATATTATAATATTTACTAAG
Found at i:4773235 original size:13 final size:13
Alignment explanation
Indices: 4773219--4773266 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
4773209 ATTATTTTAT
4773219 TATTTAAATAATA
1 TATTTAAATAATA
*
4773232 TATTTAAATATTA
1 TATTTAAATAATA
* * *
4773245 TTTTTATATTA-A
1 TATTTAAATAATA
4773257 TATTTAAATA
1 TATTTAAATA
4773267 TTTTTTATTA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
12 8 0.30
13 19 0.70
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATTTAAATAATA
Found at i:4773243 original size:24 final size:25
Alignment explanation
Indices: 4773216--4773273 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
4773206 ATTATTATTT
4773216 TATTATTTAAATAAT-ATATTTAAA
1 TATTATTTAAATAATAATATTTAAA
** *
4773240 TATTATTTTTATATTAATATTTAAA
1 TATTATTTAAATAATAATATTTAAA
*
4773265 TATTTTTTA
1 TATTATTTA
4773274 TTAAATAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 12 0.43
25 16 0.57
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTATTTAAATAATAATATTTAAA
Found at i:4774757 original size:36 final size:35
Alignment explanation
Indices: 4774709--4774781 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 35
4774699 GAAAGATATG
4774709 ATCTTTCAACTGTTAG-TCAGAATTTTTTTACTTCTT
1 ATCTTTCAACTGTTAGAT-AGAATTTTTTTACTT-TT
* *
4774745 ATCTTTCCACTGTTAGATGGAATTTTTTTACTTTT
1 ATCTTTCAACTGTTAGATAGAATTTTTTTACTTTT
4774780 AT
1 AT
4774782 ACCGATAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
35 4 0.12
36 29 0.85
37 1 0.03
ACGTcount: A:0.22, C:0.15, G:0.10, T:0.53
Consensus pattern (35 bp):
ATCTTTCAACTGTTAGATAGAATTTTTTTACTTTT
Found at i:4781630 original size:21 final size:20
Alignment explanation
Indices: 4781601--4781644 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
4781591 ATTTATTTAC
*
4781601 AAAAAAGAAAAAGGAAAAAT
1 AAAAAAGAAAAAAGAAAAAT
*
4781621 AAAAATAGAAAAAAGTAAAAT
1 AAAAA-AGAAAAAAGAAAAAT
4781642 AAA
1 AAA
4781645 CATTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (20 bp):
AAAAAAGAAAAAAGAAAAAT
Found at i:4782014 original size:308 final size:303
Alignment explanation
Indices: 4781566--4782193 Score: 760
Period size: 308 Copynumber: 2.0 Consensus size: 303
4781556 AAATTTAATT
**
4781566 TAAATTATTATTTATTTTTCTATGTATTTATTTACAAAAAAGAAAAAGGAAAAATAAAAATAGAA
1 TAAATTATTATTTATTTTTCTATAAATTTATTTACAAAAAAGAAAAAGGAAAAATAAAAATAGAA
* *
4781631 AAAAGTAAAATAAACATTTAAATATTTTTACAAAATTAATACAAATAAATATTTTTATACTTTCT
66 AAAAGTAAAAAAAAAATTTAAATATTTTTACAAAATTAATACAAATAAATATTTTTATACTTTCT
* *
4781696 TATAAAATTATTTAATTTTTGTAAAATTAACTAAAATTATAATATAATAATTATTTTTTGTATTT
131 TATAAAATTATTT-ATTTTT-TAAAATTAACTAAAATTATAATATAATAA-TA---TCTATATTT
* * **
4781761 ATTTAT-GAGGAGGAGAACAAATATAATAAAG-AAGATATAAATTTTAG-AA-AATTAAATAAAT
190 A-TTATCCA-GAGGA-AA-AAATATAATAAAGTAAGAAATAAAAGTTAGAAATAATTAAATAAAT
*
4781822 ATTTTATA-TTTTTATAA-AATATT-CATTT-TAAAATTAAAATTAAATTACAATA
251 ATTTTATACTTATTA-AATAAT-TTACATTTATAAAATT-AAATTAAATTACAATA
* * *
4781874 TAAATTATTATTTATTTTTCTATAAATTTATTTATAAACAAGAAAAAGGGGAAAATAAAAATCAG
1 TAAATTATTATTTATTTTTCTATAAATTTATTTACAAAAAAGAAAAA-GGAAAAATAAAAAT-AG
* **
4781939 -AAAAAGTAAAAAAAAAACTTTAAATATTGTTTATAAAATTAATGTAAATAAATA-TTTTATA-T
64 AAAAAAGTAAAAAAAAAA-TTTAAATATT-TTTACAAAATTAATACAAATAAATATTTTTATACT
* * * *
4782001 TTTTTAT-AAATTATTTATTTTTTAAAATTAATTGAAATTATAATATTATAATATCTATATTTAT
127 TTCTTATAAAATTATTTATTTTTTAAAATTAACTAAAATTATAATATAATAATATCTATATTTAT
*
4782065 TATCCAGAGGAAAAAATATAATATAGTAAGAAATAAAAGTTAGAAAATTAATTAAATAAATATTT
192 TATCCAGAGGAAAAAATATAATAAAGTAAGAAATAAAAGTTAG-AAA-TAATTAAATAAATATTT
* * *
4782130 TATACTTATTAAATAATTTAATATTTATAAAATTAATTTAAATTATAATA
255 TATACTTATTAAATAATTT-ACATTTATAAAATTAAATTAAATTACAATA
4782180 TAAATT-TTATTTAT
1 TAAATTATTATTTAT
4782194 GTTATAGTTT
Statistics
Matches: 280, Mismatches: 25, Indels: 33
0.83 0.07 0.10
Matches are distributed among these distances:
299 12 0.04
300 15 0.05
301 9 0.03
302 11 0.04
304 24 0.09
305 18 0.06
306 50 0.18
307 13 0.05
308 52 0.19
309 35 0.12
310 19 0.07
311 22 0.08
ACGTcount: A:0.50, C:0.03, G:0.05, T:0.42
Consensus pattern (303 bp):
TAAATTATTATTTATTTTTCTATAAATTTATTTACAAAAAAGAAAAAGGAAAAATAAAAATAGAA
AAAAGTAAAAAAAAAATTTAAATATTTTTACAAAATTAATACAAATAAATATTTTTATACTTTCT
TATAAAATTATTTATTTTTTAAAATTAACTAAAATTATAATATAATAATATCTATATTTATTATC
CAGAGGAAAAAATATAATAAAGTAAGAAATAAAAGTTAGAAATAATTAAATAAATATTTTATACT
TATTAAATAATTTACATTTATAAAATTAAATTAAATTACAATA
Found at i:4782157 original size:19 final size:19
Alignment explanation
Indices: 4782121--4782170 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
4782111 ATTAATTAAA
*
4782121 TAAAT-ATTTTATACTTAT
1 TAAATAATTTAATACTTAT
*
4782139 TAAATAATTTAATATTTAT
1 TAAATAATTTAATACTTAT
*
4782158 AAAATTAATTTAA
1 TAAA-TAATTTAA
4782171 ATTATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 5 0.19
19 14 0.52
20 8 0.30
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TAAATAATTTAATACTTAT
Found at i:4782185 original size:18 final size:20
Alignment explanation
Indices: 4782135--4782186 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 20
4782125 TATTTTATAC
*
4782135 TTATTAAAT-AATTTAATAT
1 TTATAAAATAAATTTAATAT
*
4782154 TTATAAAATTAATTTAA-A-
1 TTATAAAATAAATTTAATAT
*
4782172 TTATAATATAAATTT
1 TTATAAAATAAATTT
4782187 TATTTATGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 13 0.45
19 9 0.31
20 7 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTATAAAATAAATTTAATAT
Found at i:4782193 original size:18 final size:18
Alignment explanation
Indices: 4782151--4782193 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
4782141 AATAATTTAA
*
4782151 TATTTATAAAATTAATTT
1 TATTTATAAAATAAATTT
* * *
4782169 AAATTATAATATAAATTT
1 TATTTATAAAATAAATTT
4782187 TATTTAT
1 TATTTAT
4782194 GTTATAGTTT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTTATAAAATAAATTT
Found at i:4783009 original size:19 final size:19
Alignment explanation
Indices: 4782985--4783035 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
4782975 TATTTTTATT
4782985 TAAA-TTTAATTATAAAATA
1 TAAATTTTAA-TATAAAATA
4783004 TAAATTTTAATATAAAATGA
1 TAAATTTTAATATAAAAT-A
4783024 T--ATTTTAATATA
1 TAAATTTTAATATA
4783036 TTTTTAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.37
19 12 0.40
20 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (19 bp):
TAAATTTTAATATAAAATA
Found at i:4783030 original size:18 final size:18
Alignment explanation
Indices: 4782989--4783035 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 18
4782979 TTTATTTAAA
4782989 TTTAATTATAAAATATAAAT
1 TTTAA-TATAAAATAT-AAT
4783009 TTTAATATAAAATGAT-AT
1 TTTAATATAAAAT-ATAAT
4783027 TTTAATATA
1 TTTAATATA
4783036 TTTTTAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.42
19 8 0.31
20 7 0.27
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
TTTAATATAAAATATAAT
Found at i:4783868 original size:12 final size:12
Alignment explanation
Indices: 4783851--4783887 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
4783841 GTTAATATAT
4783851 CAAATTATAATA
1 CAAATTATAATA
4783863 CAAATT-TAA-A
1 CAAATTATAATA
4783873 -AAATTATAATA
1 CAAATTATAATA
4783884 CAAA
1 CAAA
4783888 GTCTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
9 5 0.23
10 4 0.18
11 4 0.18
12 9 0.41
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (12 bp):
CAAATTATAATA
Found at i:4784048 original size:15 final size:14
Alignment explanation
Indices: 4784018--4784058 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 14
4784008 CAAATAAGTT
4784018 AAAATAAAACTCTTAA
1 AAAATAAAA-T-TTAA
4784034 AAAATTAAAATTTAA
1 AAAA-TAAAATTTAA
4784049 AAAATAAAAT
1 AAAATAAAAT
4784059 AAAAGTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.25
15 8 0.33
16 5 0.21
17 5 0.21
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAATAAAATTTAA
Found at i:4790780 original size:31 final size:31
Alignment explanation
Indices: 4790742--4790886 Score: 199
Period size: 31 Copynumber: 4.7 Consensus size: 31
4790732 TTTAAAAAAA
4790742 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
4790773 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
4790804 AAAGTCCACGACGCAGTGGC-ATC-CTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
4790833 TTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 ---AAAGTCCACGACTCAGTGGCAATCTCT-TCTC
4790866 AAAGTCCACGACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
4790887 TTTTTTCTTT
Statistics
Matches: 103, Mismatches: 5, Indels: 12
0.86 0.04 0.10
Matches are distributed among these distances:
29 5 0.05
30 23 0.22
31 49 0.48
32 22 0.21
33 4 0.04
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:4790887 original size:62 final size:63
Alignment explanation
Indices: 4790742--4790905 Score: 214
Period size: 62 Copynumber: 2.7 Consensus size: 63
4790732 TTTAAAAAAA
4790742 AAAGTCCACGACTCAGTGGCAATCTCTTCTC---AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGC-ATC-CTTCTCTTTAAAGTCCACGACTCAGTGGCAATCTCTGCTC
* *
4790804 AAAGTCCACGACGCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGC-AT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGCAATCTCTG-CTC
* * *
4790866 AAAGTCCACGACTCAGTGGCAT-TTTTTCTTTAAAGCCCAC
1 AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCAC
4790906 AATTCTATGG
Statistics
Matches: 92, Mismatches: 6, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
60 6 0.07
61 21 0.23
62 45 0.49
63 20 0.22
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (63 bp):
AAAGTCCACGACTCAGTGGCATCCTTCTCTTTAAAGTCCACGACTCAGTGGCAATCTCTGCTC
Found at i:4790951 original size:34 final size:33
Alignment explanation
Indices: 4790828--4791409 Score: 324
Period size: 34 Copynumber: 18.0 Consensus size: 33
4790818 AGTGGCATCC
* * *
4790828 TTCTCTTTAAAGTCCACGACTCAGTGGCA-TTTT
1 TTCTCTTT-AAGCCCACAACTCCGTGGCACTTTT
* * * * *
4790861 GTCTC--AAAGTCCACGACTCAGTGGCA-TTTT
1 TTCTCTTTAAGCCCACAACTCCGTGGCACTTTT
* * **
4790891 TTCT-TTAAAGCCCACAATTCTATGGCACTTTT
1 TTCTCTTTAAGCCCACAACTCCGTGGCACTTTT
*
4790923 TTCATCTTTAAGTCCACAACTCCGTGGCAC----
1 TTC-TCTTTAAGCCCACAACTCCGTGGCACTTTT
* *
4790953 -CCT-TTTAAAGCCCACAATTCCGTGGCACTTTT
1 TTCTCTTT-AAGCCCACAACTCCGTGGCACTTTT
*
4790985 TTCATCTTTAAGTCCACCACAACTCCGTGACAC----
1 TTC-TCTTTAAG--C-CCACAACTCCGTGGCACTTTT
* * *
4791018 -CCT-TTTAAAGCCCACAATTCTGTGGCACTTTT
1 TTCTCTTT-AAGCCCACAACTCCGTGGCACTTTT
*
4791050 TTCATCTTTAAGTCCACAACTCCGTGGCAC----
1 TTC-TCTTTAAGCCCACAACTCCGTGGCACTTTT
4791080 --C-CGTTTAAGCCCACAACTCCGTGGCACCTTTT
1 TTCTC-TTTAAGCCCACAACTCCGTGGCA-CTTTT
* *
4791112 TT-TTTTTAAAGCCCACAACTCCGTGGCACATTT
1 TTCTCTTT-AAGCCCACAACTCCGTGGCACTTTT
* * *
4791145 TTCT-TTTAAAGCCCACAACTCTGTGGCACCTTC
1 TTCTCTTT-AAGCCCACAACTCCGTGGCACTTTT
* *
4791178 TTCT-TTTCAAAGCCCACGACTCCGTGGCAC--TC
1 TTCTCTTT--AAGCCCACAACTCCGTGGCACTTTT
* *
4791210 GT-T-TTAAAGCCCACAACTCCGTGGCACTCTTT
1 TTCTCTTTAAGCCCACAACTCCGTGGCACT-TTT
*
4791242 TTC-CTTCTAAGCCCACAACTCTGTGGCACTCTTT
1 TTCTCTT-TAAGCCCACAACTCCGTGGCACT-TTT
*
4791276 TTC-CGTCTAAGCCCACAACTCCGTGGCAC----
1 TTCTC-TTTAAGCCCACAACTCCGTGGCACTTTT
* *
4791305 -CCT-TTTAAGTCCACAACTCCGTGGCACCTTTTT
1 TTCTCTTTAAGCCCACAACTCCGTGGCA-C-TTTT
* *
4791338 TTTTCTTTTAAAGCCCATAACTCCGTGGCACTCTTT
1 TTCTC-TTT-AAGCCCACAACTCCGTGGCACT-TTT
* *
4791374 TTCCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
1 TTCTC-TTTAAGCCCACAACTCCGTGGCA-CTTTT
4791409 T
1 T
4791410 CCCTTCCTAA
Statistics
Matches: 438, Mismatches: 55, Indels: 110
0.73 0.09 0.18
Matches are distributed among these distances:
26 1 0.00
27 46 0.11
28 38 0.09
29 22 0.05
30 30 0.07
31 23 0.05
32 13 0.03
33 51 0.12
34 134 0.31
35 30 0.07
36 17 0.04
37 33 0.08
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (33 bp):
TTCTCTTTAAGCCCACAACTCCGTGGCACTTTT
Found at i:4790951 original size:65 final size:64
Alignment explanation
Indices: 4790833--4791408 Score: 360
Period size: 65 Copynumber: 9.0 Consensus size: 64
4790823 CATCCTTCTC
* * * * * * *
4790833 TTTAAAGTCCACGACTCAGTGGCA-TTTTGTCTC--AAAGTCCACGACTCAGTGGCATTTTTTC-
1 TTTAAAGCCCACAACTCCGTGGCACTTTTTTCTCTTTAAGTCCACAACTCCGTGGCA-TTTTTCG
* ** ** *
4790894 TTTAAAGCCCACAATTCTATGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCA---CCCT
1 TTTAAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTTAAGTCCACAACTCCGTGGCATTTTTCG
* * *
4790956 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACCACAACTCCGTGACA---C
1 TTTAAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTTAAGT---CCACAACTCCGTGGCATTTT
* *
4791018 CCT
62 TCG
* * **
4791021 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCA---CCCG
1 TTTAAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTTAAGTCCACAACTCCGTGGCATTTTTCG
* *
4791083 TTT-AAGCCCACAACTCCGTGGCACCTTTTTT-TTTTTAAAGCCCACAACTCCGTGGCACATTTT
1 TTTAAAGCCCACAACTCCGTGGCA-CTTTTTTCTCTTT-AAGTCCACAACTCCGTGG--CATTTT
*
4791146 TCT
62 TCG
* * * * * *
4791149 TTTAAAGCCCACAACTCTGTGGCACCTTCTTCT-TTTCAAAGCCCACGACTCCGTGGCA---CTC
1 TTTAAAGCCCACAACTCCGTGGCACTTTTTTCTCTTT--AAGTCCACAACTCCGTGGCATTTTTC
4791210 G
64 G
* *
4791211 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-CTTCTAAGCCCACAACTCTGTGGCACTCTT
1 -TTTAAAGCCCACAACTCCGTGGCACT-TTTTTCTCTT-TAAGTCCACAACTCCGTGGCA---TT
4791275 TTTCCG
60 TTT-CG
* *
4791281 TCT-AAGCCCACAACTCCGTGGCAC-----CCT-TTTAAGTCCACAACTCCGTGGCACCTTTTTT
1 TTTAAAGCCCACAACTCCGTGGCACTTTTTTCTCTTTAAGTCCACAACTCCGTGGCA------TT
*
4791339 TTTCT
60 TTTCG
* *
4791344 TTTAAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCATCTTTT
1 TTTAAAGCCCACAACTCCGTGGCACT-TTTTTCTC-TTTAAGTCCACAACTCCGTGGCAT-TTTT
4791409 TCCCTTCCTA
Statistics
Matches: 425, Mismatches: 47, Indels: 80
0.77 0.09 0.14
Matches are distributed among these distances:
60 4 0.01
61 74 0.17
62 79 0.19
63 49 0.12
64 33 0.08
65 81 0.19
66 13 0.03
67 42 0.10
68 21 0.05
69 3 0.01
70 3 0.01
72 23 0.05
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (64 bp):
TTTAAAGCCCACAACTCCGTGGCACTTTTTTCTCTTTAAGTCCACAACTCCGTGGCATTTTTCG
Found at i:4791005 original size:37 final size:37
Alignment explanation
Indices: 4790964--4791066 Score: 98
Period size: 37 Copynumber: 3.0 Consensus size: 37
4790954 CTTTTAAAGC
4790964 CCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCA
1 CCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCA
* * **
4791001 CCACAACTCCGTGACACCCTTTT-A-----AAG--C-
1 CCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCA
*
4791029 CCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCA
1 CCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCA
4791066 C
1 C
4791067 AACTCCGTGG
Statistics
Matches: 48, Mismatches: 9, Indels: 18
0.64 0.12 0.24
Matches are distributed among these distances:
28 18 0.38
29 2 0.04
31 3 0.06
34 3 0.06
36 2 0.04
37 20 0.42
ACGTcount: A:0.23, C:0.32, G:0.11, T:0.34
Consensus pattern (37 bp):
CCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCA
Found at i:4791032 original size:127 final size:127
Alignment explanation
Indices: 4790894--4791270 Score: 459
Period size: 127 Copynumber: 3.0 Consensus size: 127
4790884 GCATTTTTTC
*
4790894 TTTAAAGCCCACAATTCTATGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTT
1 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTT
*
4790959 AAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT-AAGTCCACCACAACTCCGT-G-ACA-CCC
66 AAAGCCCACAACTCCGTGGCACTTTTTTC-TCTTTAAAG--C-CCACAACTCCGTGGCACATCCC
4791020 T
127 T
*
4791021 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCGTTT
1 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTT
* **
4791086 -AAGCCCACAACTCCGTGGCACCTTTTTT-TTTTTAAAGCCCACAACTCCGTGGCACATTTTTCT
66 AAAGCCCACAACTCCGTGGCA-CTTTTTTCTCTTTAAAGCCCACAACTCCGTGGCACA--TCCCT
* * * * * *
4791149 TTTAAAGCCCACAACTCTGTGGCACCTTCTTC-T-TTTCAAAGCCCACGACTCCGTGGCACTCGT
1 TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTT--AAGTCCACAACTCCGTGGCAC-CCT
*
4791212 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-CTTCT-AAGCCCACAACTCTGTGGCAC
63 TTTAAAGCCCACAACTCCGTGGCACT-TTTTTCTCTT-TAAAGCCCACAACTCCGTGGCAC
4791271 TCTTTTTCCG
Statistics
Matches: 221, Mismatches: 15, Indels: 25
0.85 0.06 0.10
Matches are distributed among these distances:
123 12 0.05
124 2 0.01
125 7 0.03
126 25 0.11
127 71 0.32
128 50 0.23
129 6 0.03
130 47 0.21
131 1 0.00
ACGTcount: A:0.23, C:0.33, G:0.13, T:0.32
Consensus pattern (127 bp):
TTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCACCCTTTT
AAAGCCCACAACTCCGTGGCACTTTTTTCTCTTTAAAGCCCACAACTCCGTGGCACATCCCT
Found at i:4791269 original size:97 final size:95
Alignment explanation
Indices: 4791001--4791402 Score: 340
Period size: 95 Copynumber: 4.2 Consensus size: 95
4790991 TTTAAGTCCA
* * * * * * *
4791001 CCACAACTCCGTGACACCCTTTTAAAGCCCACAATTCTGTGGCACTTTTTTCATCTTTAAGTCCA
1 CCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTC-TAAAGCCCA
*
4791066 CAACTCCGTGGCAC-C--CGTT---T--AAGC
65 CAACTCTGTGGCACTCTTC-TTCCGTCAAAGC
* * *
4791090 CCACAACTCCGTGGCACCTTTTTTTTTTTAAAGCCCACAACTCCGTGGCACATTTTTCTTTTAAA
1 CCACAACTCCGTGGCACC------CTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTCTAAA
**
4791155 GCCCACAACTCTGTGGCAC-CTTCTTCTTTTCAAAGC
60 GCCCACAACTCTGTGGCACTCTTCTTC-CGTCAAAGC
* *
4791191 CCACGACTCCGTGGCACTCGTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCT-AAGCC
1 CCACAACTCCGTGGCAC-CCTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTCTAAAGCC
* *
4791255 CACAACTCTGTGGCACTCTTTTTCCGTCTAAGC
63 CACAACTCTGTGGCACTCTTCTTCCGTCAAAGC
* *
4791288 CCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCACCTTTTTTTTTCTTTTAAAGC
1 CCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACC----TTTTTCTTCTAAAGC
* * * * ** *
4791352 CCATAACTCCGTGGCACTCTTTTTCCCTTTTAAGT
62 CCACAACTCTGTGGCACTCTTCTT-CCGTCAAAGC
4791387 CCACAACTCCGTGGCA
1 CCACAACTCCGTGGCA
4791403 TCTTTTTCCC
Statistics
Matches: 262, Mismatches: 27, Indels: 38
0.80 0.08 0.12
Matches are distributed among these distances:
89 17 0.06
94 22 0.08
95 53 0.20
96 32 0.12
97 52 0.20
98 41 0.16
99 24 0.09
101 20 0.08
102 1 0.00
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (95 bp):
CCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTCTAAAGCCCAC
AACTCTGTGGCACTCTTCTTCCGTCAAAGC
Found at i:4791337 original size:27 final size:27
Alignment explanation
Indices: 4791283--4791337 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
4791273 TTTTTCCGTC
4791283 TAAGCCCACAACTCCGTGGCACCCTTT
1 TAAGCCCACAACTCCGTGGCACCCTTT
* *
4791310 TAAGTCCACAACTCCGTGGCACCTTTT
1 TAAGCCCACAACTCCGTGGCACCCTTT
4791337 T
1 T
4791338 TTTTCTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.36, G:0.15, T:0.27
Consensus pattern (27 bp):
TAAGCCCACAACTCCGTGGCACCCTTT
Found at i:4791395 original size:35 final size:35
Alignment explanation
Indices: 4791304--4791414 Score: 152
Period size: 35 Copynumber: 3.1 Consensus size: 35
4791294 CTCCGTGGCA
*
4791304 CCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCA-CTCTTTTT
** * *
4791340 TTCTTTTAAAGCCCATAACTCCGTGGCACTCTTTTT
1 CCCTTTT-AAGTCCACAACTCCGTGGCACTCTTTTT
4791376 CCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
1 CCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
4791410 CCCTT
1 CCCTT
4791415 CCTAAAGCCC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
34 12 0.18
35 18 0.28
36 17 0.26
37 18 0.28
ACGTcount: A:0.17, C:0.32, G:0.11, T:0.40
Consensus pattern (35 bp):
CCCTTTTAAGTCCACAACTCCGTGGCACTCTTTTT
Found at i:4791455 original size:33 final size:35
Alignment explanation
Indices: 4791412--4791481 Score: 126
Period size: 33 Copynumber: 2.1 Consensus size: 35
4791402 ATCTTTTTCC
4791412 CTTCCTAAAGCCCACACAAGTCGGTGGCAA-CCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
4791446 CTTCC-AAAGCCCACACAAGTCGGTGGCAACCCTT
1 CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
4791480 CT
1 CT
4791482 AAGCCCAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 24 0.69
34 11 0.31
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (35 bp):
CTTCCTAAAGCCCACACAAGTCGGTGGCAACCCTT
Found at i:4791545 original size:49 final size:49
Alignment explanation
Indices: 4791481--4792610 Score: 1479
Period size: 49 Copynumber: 23.9 Consensus size: 49
4791471 GCAACCCTTC
* * * * *
4791481 TAAGCCCAATATAGCTGGCCTTGAATCAACATATTGGCATCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
4791530 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4791573 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4791622 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
4791671 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4791714 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4791763 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGACACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
4791812 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
4791861 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4791904 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
4791952 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4791995 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4792044 TAAGTCCAATGTAGCTAGCCTTGACTCAGCACATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
4792093 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
4792142 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4792185 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
4792233 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4792276 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
4792325 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTC-TCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCATCTT
* *
4792374 TACGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
4792423 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
4792471 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATT-G-A----CACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
4792514 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACATTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTT
* *
4792566 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTC
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CCTTC
4792611 TTCTCATCAT
Statistics
Matches: 972, Mismatches: 63, Indels: 91
0.86 0.06 0.08
Matches are distributed among these distances:
43 276 0.28
44 1 0.00
45 6 0.01
46 3 0.00
47 3 0.00
48 122 0.13
49 514 0.53
50 4 0.00
51 2 0.00
52 40 0.04
53 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:4791740 original size:141 final size:141
Alignment explanation
Indices: 4791481--4792553 Score: 1477
Period size: 141 Copynumber: 7.6 Consensus size: 141
4791471 GCAACCCTTC
* * * * *
4791481 TAAGCCCAATATAGCTGGCCTTGAATCAACATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
4791546 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
4791611 ACCTTCATCTT
131 ACCTTCATCTT
*
4791622 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
4791687 GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
*
4791752 ACCTTTATCTT
131 ACCTTCATCTT
* * *
4791763 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGACACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
4791828 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
4791893 ATTGGCA----C--CTT
125 ATTGGCACCTTCATCTT
* * *
4791904 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
4791968 GGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
*
4792033 ACCTTTATCTT
131 ACCTTCATCTT
* * *
4792044 TAAGTCCAATGTAGCTAGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* *
4792109 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
4792174 ATTGGCA----C--CTT
125 ATTGGCACCTTCATCTT
* * *
4792185 TAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
4792249 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGC
66 GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
4792314 ACCTTCATCTT
131 ACCTTCATCTT
* * *
4792325 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCTCTTTACGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * *
4792390 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCAT
*
4792455 ATTGGCACC-TCACCTT
125 ATTGGCACCTTCATCTT
* * * *
4792471 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATT-G-A-C---ACCTTTAAGTCCAATATAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
4792530 GGCCTTGAATCAGCATATTGGCAC
66 GGCCTTGAATCAGCACATTGGCAC
4792554 ATTTTCCATC
Statistics
Matches: 838, Mismatches: 62, Indels: 69
0.86 0.06 0.07
Matches are distributed among these distances:
134 79 0.09
136 3 0.00
138 1 0.00
140 207 0.25
141 381 0.45
143 1 0.00
144 1 0.00
145 4 0.00
146 40 0.05
147 121 0.14
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (141 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC
ACCTTCATCTT
Found at i:4791903 original size:21 final size:21
Alignment explanation
Indices: 4791879--4791945 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
4791869 ATGTAGCTGG
4791879 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* * *
4791900 CCTTTAAGTC--CA-ATATCGCTGG
1 CCTTGAA-TCAGCACAT-TGGC--A
4791922 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
4791943 CCT
1 CCT
4791946 CACCTTTAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 11 0.33
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:4792052 original size:281 final size:281
Alignment explanation
Indices: 4791481--4792553 Score: 1682
Period size: 281 Copynumber: 3.8 Consensus size: 281
4791471 GCAACCCTTC
* * * * *
4791481 TAAGCCCAATATAGCTGGCCTTGAATCAACATATTGGCATCTTCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
* * *
4791546 GGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAT
66 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* * *
4791605 ATTGGCACCTTCATCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCT
131 ATTGGCA----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCT
*
4791670 TTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCT
189 TTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCT
4791735 TGAATCAGCATATTGGCACCTTTATCTT
254 TGAATCAGCATATTGGCACCTTTATCTT
* * *
4791763 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGACACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
4791828 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
4791893 ATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTC
131 ATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTC
*
4791958 CAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCA
196 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCA
4792023 GCATATTGGCACCTTTATCTT
261 GCATATTGGCACCTTTATCTT
* * *
4792044 TAAGTCCAATGTAGCTAGCCTTGACTCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
4792109 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
*
4792174 ATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTC
131 ATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTC
*
4792239 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCA
196 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCA
*
4792304 GCATATTGGCACCTTCATCTT
261 GCATATTGGCACCTTTATCTT
* * *
4792325 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTCTCTTTACGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
*
4792390 GGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
66 GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
* *
4792455 ATTGGCACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATT-G-A---CACCTTT
131 ATTGG-----CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTT
* *
4792515 AAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
191 AAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
4792554 ATTTTCCATC
Statistics
Matches: 748, Mismatches: 32, Indels: 23
0.93 0.04 0.03
Matches are distributed among these distances:
281 545 0.73
282 122 0.16
284 2 0.00
285 1 0.00
286 39 0.05
288 39 0.05
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (281 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
GGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAC
ATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTC
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGCCTTGAATCA
GCATATTGGCACCTTTATCTT
Found at i:4792184 original size:21 final size:21
Alignment explanation
Indices: 4792160--4792226 Score: 50
Period size: 21 Copynumber: 3.1 Consensus size: 21
4792150 ATGTAGCTGG
4792160 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
* * *
4792181 CCTTTAAGTC--CA-ATATCGCTGG
1 CCTTGAA-TCAGCACAT-TGGC--A
4792203 CCTTGAATCAGCACATTGGCA
1 CCTTGAATCAGCACATTGGCA
4792224 CCT
1 CCT
4792227 CACCTTTAAG
Statistics
Matches: 33, Mismatches: 6, Indels: 14
0.62 0.11 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 11 0.33
22 8 0.24
23 5 0.15
24 2 0.06
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (21 bp):
CCTTGAATCAGCACATTGGCA
Found at i:4792722 original size:67 final size:68
Alignment explanation
Indices: 4792614--4792740 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
4792604 ATCCTTCTTC
* * *
4792614 TCATCATTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
4792678 TCT
66 TCT
* * * * *
4792681 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCATCATCTTT
1 TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
4792741 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (68 bp):
TCATCATTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:4793569 original size:33 final size:33
Alignment explanation
Indices: 4793532--4793596 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
4793522 TTCAACGATT
4793532 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
4793565 TGTATCGATACATATTTTTTTGTATCGATACA
1 TGTATCGATACATAAAATGTTGTATCGATACA
4793597 TTTTAAGCTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:4793570 original size:13 final size:13
Alignment explanation
Indices: 4793552--4793576 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4793542 CATAAAATGT
4793552 TGTATCGATACAA
1 TGTATCGATACAA
4793565 TGTATCGATACA
1 TGTATCGATACA
4793577 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:4796890 original size:27 final size:28
Alignment explanation
Indices: 4796860--4796916 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
4796850 TTGATACTCA
* *
4796860 TTATA-TAATGAAATTTAT-TATATAATT
1 TTATATTAATAAAATATATATAT-TAATT
4796887 TTATATTAATAAAATATATATATTAATT
1 TTATATTAATAAAATATATATATTAATT
4796915 TT
1 TT
4796917 TAAAATTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 5 0.19
28 18 0.69
29 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (28 bp):
TTATATTAATAAAATATATATATTAATT
Found at i:4797632 original size:24 final size:24
Alignment explanation
Indices: 4797592--4797647 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
4797582 ATAGTTAAAG
*
4797592 TTTAATGTATTTATTTATATAATTT
1 TTTAAT-TATTTATTTATATAATGT
* *
4797617 TTTAATTATTTTTTTATATCATGT
1 TTTAATTATTTATTTATATAATGT
4797641 TTTAATT
1 TTTAATT
4797648 TATTAGATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 22 0.79
25 6 0.21
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.66
Consensus pattern (24 bp):
TTTAATTATTTATTTATATAATGT
Found at i:4801769 original size:22 final size:22
Alignment explanation
Indices: 4801733--4801788 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
4801723 ATAATACAAC
4801733 AAAAG-CAA-AAAAAAAAAAAA
1 AAAAGCCAACAAAAAAAAAAAA
***
4801753 AAAAGCCAACAAAAAAAATGTA
1 AAAAGCCAACAAAAAAAAAAAA
*
4801775 AAAAGCCACCAAAA
1 AAAAGCCAACAAAA
4801789 TTACACTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 5 0.17
21 3 0.10
22 22 0.73
ACGTcount: A:0.75, C:0.14, G:0.07, T:0.04
Consensus pattern (22 bp):
AAAAGCCAACAAAAAAAAAAAA
Found at i:4802634 original size:20 final size:22
Alignment explanation
Indices: 4802605--4802645 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
4802595 TAAGTGCCAC
*
4802605 ATAAATTTTAA-ATT-TCAAAA
1 ATAAAATTTAACATTGTCAAAA
4802625 ATAAAATTTAACATTGTCAAA
1 ATAAAATTTAACATTGTCAAA
4802646 TTTATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (22 bp):
ATAAAATTTAACATTGTCAAAA
Found at i:4802769 original size:15 final size:16
Alignment explanation
Indices: 4802737--4802776 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
4802727 ATTTTCATTG
4802737 ACTAATTAGAGGTTTTA
1 ACTAATTAGA-GTTTTA
4802754 ACTAATTAGA-TTTTA
1 ACTAATTAGAGTTTTA
*
4802769 AATAATTA
1 ACTAATTA
4802777 AATAGATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.55
17 10 0.45
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.42
Consensus pattern (16 bp):
ACTAATTAGAGTTTTA
Found at i:4803669 original size:17 final size:18
Alignment explanation
Indices: 4803647--4803682 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
4803637 ATATCAAATT
4803647 ATTTATCTAA-ATTTAAA
1 ATTTATCTAATATTTAAA
*
4803664 ATTTATTTAATATTTAAA
1 ATTTATCTAATATTTAAA
4803682 A
1 A
4803683 AATTTTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTTATCTAATATTTAAA
Found at i:4807239 original size:20 final size:19
Alignment explanation
Indices: 4807210--4807284 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 19
4807200 AAAAAGACAT
4807210 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* *
4807229 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
4807250 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTG-AA
4807270 AATGTATCGATACAT
1 AATGTATCGATACAT
4807285 CTAGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:4807267 original size:40 final size:39
Alignment explanation
Indices: 4807207--4807284 Score: 120
Period size: 40 Copynumber: 2.0 Consensus size: 39
4807197 GATAAAAAGA
*
4807207 CATAATGTATCGATACATTGAAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
4807246 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
4807285 CTAGGTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:4809035 original size:21 final size:21
Alignment explanation
Indices: 4808992--4809039 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
4808982 AAAGCTTTAA
*
4808992 TTTACTTATAAATATATACAT
1 TTTACTTATAAATATAGACAT
* * *
4809013 TTTATTTATAAATGTAGATA-
1 TTTACTTATAAATATAGACAT
4809033 TTTACTT
1 TTTACTT
4809040 TCGTCTAGAT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.38, C:0.06, G:0.04, T:0.52
Consensus pattern (21 bp):
TTTACTTATAAATATAGACAT
Found at i:4810156 original size:23 final size:23
Alignment explanation
Indices: 4810130--4810180 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
4810120 ATTTATATTT
4810130 TTAAACTTAAT-AAAATAAAATTA
1 TTAAA-TTAATAAAAATAAAATTA
* *
4810153 TTAAATTAATAAAAATTAAATTT
1 TTAAATTAATAAAAATAAAATTA
4810176 TTAAA
1 TTAAA
4810181 AAATAAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TTAAATTAATAAAAATAAAATTA
Found at i:4810172 original size:15 final size:14
Alignment explanation
Indices: 4810152--4810196 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
4810142 AAATAAAATT
4810152 ATTAAATTAATAAAA
1 ATTAAATT-ATAAAA
*
4810167 ATTAAATTTTTAAAA
1 ATTAAA-TTATAAAA
*
4810182 AATAAATTATAAAA
1 ATTAAATTATAAAA
4810196 A
1 A
4810197 ATATAATATA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 8 0.31
15 16 0.62
16 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTAAATTATAAAA
Found at i:4810194 original size:14 final size:14
Alignment explanation
Indices: 4810154--4810208 Score: 58
Period size: 14 Copynumber: 3.8 Consensus size: 14
4810144 ATAAAATTAT
*
4810154 TAAATTAATAAAAAT
1 TAAATT-ATAAAAAA
*
4810169 TAAATTTTTAAAAAA
1 TAAA-TTATAAAAAA
4810184 TAAATTATAAAAAA
1 TAAATTATAAAAAA
4810198 TATAA-TATAAA
1 TA-AATTATAAA
4810209 CGTACCTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
14 17 0.49
15 16 0.46
16 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
TAAATTATAAAAAA
Found at i:4810202 original size:16 final size:16
Alignment explanation
Indices: 4810154--4810202 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
4810144 ATAAAATTAT
4810154 TAAATTA-ATAAAAAT-
1 TAAATTATA-AAAAATA
* *
4810169 TAAATTTTTAAAAA-A
1 TAAATTATAAAAAATA
4810184 TAAATTATAAAAAATA
1 TAAATTATAAAAAATA
4810200 TAA
1 TAA
4810203 TATAAACGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
15 23 0.85
16 4 0.15
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TAAATTATAAAAAATA
Found at i:4810638 original size:20 final size:20
Alignment explanation
Indices: 4810608--4810668 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
4810598 ATATTGAAAG
*
4810608 ATTTAAATATTTTTAATTTT
1 ATTTAATTATTTTTAATTTT
* *
4810628 ATTTTATTA-TTATAATATTT
1 ATTTAATTATTTTTAAT-TTT
*
4810648 ATTTAATTTTTTATTAATTTT
1 ATTTAATTATTT-TTAATTTT
4810669 TAACTAAGTT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
19 6 0.19
20 17 0.53
21 5 0.16
22 4 0.12
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTAATTATTTTTAATTTT
Found at i:4811656 original size:20 final size:20
Alignment explanation
Indices: 4811633--4811670 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
4811623 GTTTTATATG
4811633 AAAATTATATTAT-TTAGTAT
1 AAAATT-TATTATCTTAGTAT
4811653 AAAATTTATTATCTTAGT
1 AAAATTTATTATCTTAGT
4811671 GTTTGTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (20 bp):
AAAATTTATTATCTTAGTAT
Found at i:4811925 original size:17 final size:17
Alignment explanation
Indices: 4811896--4811929 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
4811886 TAAATTAAAT
4811896 AAATTTTATTAATAATA
1 AAATTTTATTAATAATA
4811913 AAATATTTA-TAATAATA
1 AAAT-TTTATTAATAATA
4811930 CTTTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATTTTATTAATAATA
Found at i:4812901 original size:21 final size:19
Alignment explanation
Indices: 4812872--4812922 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 19
4812862 TCATAAAATG
4812872 ATAACGTATATATTTAAAATA
1 ATAA-GTATATATTTAAAA-A
4812893 ATTAAGTAT-T-TTTAAAAA
1 A-TAAGTATATATTTAAAAA
*
4812911 ATAAATATATAT
1 ATAAGTATATAT
4812923 ATATATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
17 6 0.23
18 3 0.12
19 8 0.31
20 1 0.04
21 5 0.19
22 3 0.12
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (19 bp):
ATAAGTATATATTTAAAAA
Found at i:4812920 original size:2 final size:2
Alignment explanation
Indices: 4812915--4812951 Score: 56
Period size: 2 Copynumber: 18.0 Consensus size: 2
4812905 TAAAAAATAA
*
4812915 AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
4812952 TAAAAATATA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:4813713 original size:15 final size:15
Alignment explanation
Indices: 4813661--4813715 Score: 58
Period size: 16 Copynumber: 3.6 Consensus size: 15
4813651 TATTTCAGGT
*
4813661 AAAATAAAATTAATGT
1 AAAATAAAATTAAT-A
4813677 AAAATAAAATT-ATA
1 AAAATAAAATTAATA
* *
4813691 AATTATAAATTTAATA
1 AA-AATAAAATTAATA
4813707 AAAATAAAA
1 AAAATAAAA
4813716 ATAAAACTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 2 0.06
15 14 0.44
16 16 0.50
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (15 bp):
AAAATAAAATTAATA
Found at i:4814002 original size:13 final size:15
Alignment explanation
Indices: 4813984--4814016 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
4813974 TAAATTAACA
4813984 TAAAATAA-AAA-AT
1 TAAAATAATAAATAT
4813997 TAAAATAATAAATAT
1 TAAAATAATAAATAT
4814012 TAAAA
1 TAAAA
4814017 AATTCATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 3 0.17
15 7 0.39
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAAATAATAAATAT
Found at i:4814828 original size:26 final size:26
Alignment explanation
Indices: 4814778--4814828 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
4814768 GATAGGATTG
* * *
4814778 ATAAAGTTTAATTTTATTTGGAATTA
1 ATAAAGTTTAACTTTATCTGAAATTA
4814804 ATAAAGTTTAACTTTATCTGAAATT
1 ATAAAGTTTAACTTTATCTGAAATT
4814829 CTAGATAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.04, G:0.10, T:0.47
Consensus pattern (26 bp):
ATAAAGTTTAACTTTATCTGAAATTA
Found at i:4818202 original size:2 final size:2
Alignment explanation
Indices: 4818158--4818190 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4818148 TCTTTCTTCG
4818158 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
4818191 TATTTTCTCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:4818294 original size:26 final size:26
Alignment explanation
Indices: 4818265--4818317 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
4818255 AAAGTAAGAT
4818265 TTTTAGATTTTACAAATTAATTTTTA
1 TTTTAGATTTTACAAATTAATTTTTA
4818291 TTTTAGATTTTACAAATTAATTTTTA
1 TTTTAGATTTTACAAATTAATTTTTA
4818317 T
1 T
4818318 GATTTAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.58
Consensus pattern (26 bp):
TTTTAGATTTTACAAATTAATTTTTA
Found at i:4818323 original size:21 final size:22
Alignment explanation
Indices: 4818263--4818322 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 22
4818253 TAAAAGTAAG
4818263 ATTTTTA-GATTTTACAAATTA
1 ATTTTTATGATTTTACAAATTA
4818284 ATTTTTATTTTAGATTTTACAAATTA
1 ATTTTTA---T-GATTTTACAAATTA
4818310 ATTTTTATGATTT
1 ATTTTTATGATTT
4818323 AGGTTTTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
21 7 0.21
22 5 0.15
23 1 0.03
26 21 0.62
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.58
Consensus pattern (22 bp):
ATTTTTATGATTTTACAAATTA
Found at i:4819353 original size:18 final size:17
Alignment explanation
Indices: 4819326--4819366 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
4819316 TTTGTCCTTA
4819326 AATA-ATATATACGTGT
1 AATATATATATACGTGT
*
4819342 ATATATATATATATGTGT
1 A-ATATATATATACGTGT
4819360 AATATAT
1 AATATAT
4819367 TCTTCTTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 9 0.41
18 12 0.55
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (17 bp):
AATATATATATACGTGT
Found at i:4822425 original size:27 final size:27
Alignment explanation
Indices: 4822376--4823028 Score: 342
Period size: 27 Copynumber: 23.9 Consensus size: 27
4822366 CTATGATTCA
*
4822376 GTGGCATTCCTTTTAAAGTCCACAAATTC
1 GTGGCATT-CTTTT-AAGTCCACAAATCC
* * *
4822405 GTGGCATTATTTTAAGTCCACAACTCT
1 GTGGCATTCTTTTAAGTCCACAAATCC
** * * * **
4822432 GTGGCACCCTTTTTGAGTCCATAAGTTT
1 GTGGCATTC-TTTTAAGTCCACAAATCC
* * *
4822460 GTAGCATCCTTTTAAGTCCACAACTCC
1 GTGGCATTCTTTTAAGTCCACAAATCC
*
4822487 GTGGCA-TCTTTTTAAGTCCACAACTCC
1 GTGGCATTC-TTTTAAGTCCACAAATCC
** *
4822514 GTGGCACCCTTTTAAGGTCCACAAGTCC
1 GTGGCATTCTTTTAA-GTCCACAAATCC
* * ** *
4822542 ATGACACCCTTTTAAGTCCACAAGTCC
1 GTGGCATTCTTTTAAGTCCACAAATCC
* *
4822569 GTGGCATCCTTTTAAGTCCACAAGTCC
1 GTGGCATTCTTTTAAGTCCACAAATCC
* * * * **
4822596 ATGGTATCCTTTTAAGTCC-CTAATTAT
1 GTGGCATTCTTTTAAGTCCAC-AAATCC
* * * *
4822623 GTGGTACTCTTTTAAGTCCACAAGTCT
1 GTGGCATTCTTTTAAGTCCACAAATCC
4822650 GTGGCA-TCTTTTTAAGTCCACAAATCC
1 GTGGCATTC-TTTTAAGTCCACAAATCC
* * *
4822677 GTGGCACCTT-TTTAAAGTCCATAACTCC
1 GTGGCA--TTCTTTTAAGTCCACAAATCC
* ** * * **
4822705 ATGGCACCCTTTTGAGTCCACAACTTT
1 GTGGCATTCTTTTAAGTCCACAAATCC
** * * *
4822732 GTGGCACCCTTTTAAGTCCATAACTCT
1 GTGGCATTCTTTTAAGTCCACAAATCC
* ** *
4822759 ATGGCACCCTTTTAAGTCCACAACTCC
1 GTGGCATTCTTTTAAGTCCACAAATCC
** * * *
4822786 GTGGCACCCTTTTAAAGTACACAACTCT
1 GTGGCATTCTTTT-AAGTCCACAAATCC
** * *
4822814 GTGGCAACCTTTTAAAGTCTACAACTCC
1 GTGGCATTCTTTT-AAGTCCACAAATCC
* * ** *
4822842 ATGACACCCTTTTAAAGTCCACAACTCC
1 GTGGCATTCTTTT-AAGTCCACAAATCC
** *
4822870 GTGGCACCCTTTTAAGTCCACAACTCC
1 GTGGCATTCTTTTAAGTCCACAAATCC
** * *
4822897 GTGGCACCCCTTTAAGTCCACAACTCC
1 GTGGCATTCTTTTAAGTCCACAAATCC
* * * *
4822924 GTGGCATCCTTTTAAAGTTCACAACTCT
1 GTGGCATTCTTTT-AAGTCCACAAATCC
* * *
4822952 GTAGCATCCTTTTAAGTCCACAACTCC
1 GTGGCATTCTTTTAAGTCCACAAATCC
* * * * * * *
4822979 ATGGCATCCTTTCATGTCCATAACTTC
1 GTGGCATTCTTTTAAGTCCACAAATCC
* *
4823006 GTGGCATTTTTTTAAGCCCACAA
1 GTGGCATTCTTTTAAGTCCACAA
4823029 GTTAGTGGCA
Statistics
Matches: 519, Mismatches: 92, Indels: 28
0.81 0.14 0.04
Matches are distributed among these distances:
26 4 0.01
27 340 0.66
28 166 0.32
29 8 0.02
30 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (27 bp):
GTGGCATTCTTTTAAGTCCACAAATCC
Found at i:4823012 original size:82 final size:82
Alignment explanation
Indices: 4822384--4823011 Score: 650
Period size: 82 Copynumber: 7.6 Consensus size: 82
4822374 CAGTGGCATT
* * ** * **
4822384 CCTTTTAAAGTCCACAAATTCGTGGCATTATTTTAAGTCCACAACTCTGTGGCACCCTTTTTGAG
1 CCTTTT-AAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAG
* * * * *
4822449 TCCATAAGTTTGTAGCAT
65 TCCACAACTCTGTGGCAC
* *
4822467 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGGT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
* ** *
4822532 CCACAAGTCCATGACAC
66 CCACAACTCTGTGGCAC
* * * * *
4822549 CCTTTTAAGTCCACAAGTCCGTGGCATCCTTTTAAGTCCACAAGTCCATGGTATCCTTTT-AAGT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
* * *
4822613 CC-CTAATTATGTGGTAC
66 CCAC-AACTCTGTGGCAC
* * * * * *
4822630 TCTTTTAAGTCCACAAGTCTGTGGCATCTTTTTAAGTCCACAAATCCGTGGCACCTTTTTAAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
* **
4822695 CCATAACTCCATGGCAC
66 CCACAACTCTGTGGCAC
* ** * * **
4822712 CCTTTTGAGTCCACAACTTTGTGGCACCCTTTTAAGTCCATAACTCTATGGCACCCTTTT-AAGT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
*
4822776 CCACAACTCCGTGGCAC
66 CCACAACTCTGTGGCAC
* * * * * *
4822793 CCTTTTAAAGTACACAACTCTGTGGCAACCTTTTAAAGTCTACAACTCCATGACACCCTTTTAAA
1 CCTTTT-AAGTCCACAACTCCGTGGCATCCTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAA
*
4822858 GTCCACAACTCCGTGGCAC
64 GTCCACAACTCTGTGGCAC
* * *
4822877 CCTTTTAAGTCCACAACTCCGTGGCACCCCTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGT
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
* * *
4822942 TCACAACTCTGTAGCAT
66 CCACAACTCTGTGGCAC
* * * * *
4822959 CCTTTTAAGTCCACAACTCCATGGCATCCTTTCATGTCCATAACTTCGTGGCA
1 CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCA
4823012 TTTTTTTAAG
Statistics
Matches: 457, Mismatches: 82, Indels: 13
0.83 0.15 0.02
Matches are distributed among these distances:
80 1 0.00
81 89 0.19
82 288 0.63
83 52 0.11
84 27 0.06
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.31
Consensus pattern (82 bp):
CCTTTTAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGT
CCACAACTCTGTGGCAC
Found at i:4823037 original size:109 final size:110
Alignment explanation
Indices: 4822374--4823168 Score: 639
Period size: 109 Copynumber: 7.2 Consensus size: 110
4822364 GTCTATGATT
* *** **
4822374 CAGTGGCATTCCTTTTAAAGTCCACAAAT-TCGTGGCATTATTTTAAGTCCACAACTCTGTGGCA
1 CAGTGGCA-TCCTTTTAAAGTCCACAACTCT-GTGGCACCCTTTTAAGTCCACAACTCCATGGCA
* * * ** * *
4822438 CCCTTTTTGAGTCCATAAGTTTGTAGCATCCTTTTAAGTCCACAACTC
64 CCC-TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC
* * * *
4822486 C-GTGGCAT-CTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGGTCCACAAGTCCATGACAC
1 CAGTGGCATCCTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAA-GTCCACAACTCCATGGCAC
* * *
4822549 CCTTTTAAGTCCACAAGTCCGTGGCATCCTTTTAAGTCCACAAGTC
65 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC
* * * * * * ** *
4822595 CA-TGGTATCCTTTT-AAGTCC-CTAATTATGTGGTACTCTTTTAAGTCCACAAGTCTGTGGCAT
1 CAGTGGCATCCTTTTAAAGTCCAC-AACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCAC
* * * *
4822657 CTTTTTAAGTCCACAAATCCGTGGCACCTTTTTAAAGTCCATAACTC
65 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTC
* * * * *
4822704 CA-TGGCACCCTTTT-GAGTCCACAACTTTGTGGCACCCTTTTAAGTCCATAACTCTATGGCACC
1 CAGTGGCATCCTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCACC
*
4822767 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAAGTACACAACT-
66 CTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTC
* * * ** * *
4822812 CTGTGGCAACCTTTTAAAGTCTACAACTCCATGACACCCTTTTAAAGTCCACAACTCCGTGGCAC
1 CAGTGGCATCCTTTTAAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCCATGGCAC
*
4822877 CCTTTTAAGTCCACAACTCCGTGGCACCCCTTTAAGTCCACAACTC
65 CCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC
* * * *
4822923 C-GTGGCATCCTTTTAAAGTTCACAACTCTGTAGCATCCTTTTAAGTCCACAACTCCATGGCATC
1 CAGTGGCATCCTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCACC
* * * * *** * *
4822987 CTTTCATGTCCATAACTTCGTGGCATTTTTTTAAGCCCACAAGT-
66 CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC
* * * * * * *
4823031 TAGTGGCA-CCTTTCCAAAGCCCACAAGT-TAGTGGCACCGTTTTAAAGCCCACAAGT-CAGTGG
1 CAGTGGCATCCTTT-TAAAGTCCACAACTCT-GTGGCACCCTTTT-AAGTCCACAACTCCA-TGG
* * * * * ** * * *
4823093 CATCCTTTCAAAGTCAATAAGTCAATGGCACCCTTTCAAAGCCCACAAGT-
62 CACCCTTT-TAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTC
* * *
4823143 AAGTGACATCCTTTCAAAGTCCACAA
1 CAGTGGCATCCTTTTAAAGTCCACAA
4823169 GTCAGTGGTA
Statistics
Matches: 559, Mismatches: 105, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
108 52 0.09
109 288 0.52
110 110 0.20
111 74 0.13
112 30 0.05
113 5 0.01
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.30
Consensus pattern (110 bp):
CAGTGGCATCCTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCATGGCACC
CTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTC
Found at i:4823052 original size:28 final size:28
Alignment explanation
Indices: 4823019--4823432 Score: 291
Period size: 28 Copynumber: 14.2 Consensus size: 28
4823009 GCATTTTTTT
*
4823019 AAGCCCACAAGTTAGTGGCA-CCTTTCCA
1 AAGCCCACAAGTCAGTGGCATCCTTT-CA
* *
4823047 AAGCCCACAAGTTAGTGGCA-CCGTTTTA
1 AAGCCCACAAGTCAGTGGCATCC-TTTCA
4823075 AAGCCCACAAGTCAGTGGCATCCTTTCA
1 AAGCCCACAAGTCAGTGGCATCCTTTCA
* * * * *
4823103 AAGTCAATAAGTCAATGGCACCCTTTCA
1 AAGCCCACAAGTCAGTGGCATCCTTTCA
* *
4823131 AAGCCCACAAGTAAGTGACATCCTTTCA
1 AAGCCCACAAGTCAGTGGCATCCTTTCA
* *
4823159 AAGTCCACAAGTCAGTGGTATCCTTTCAA
1 AAGCCCACAAGTCAGTGGCATCCTTTC-A
* *
4823188 AAGCCTACAAGTTAGTGGCATCTTCTTTTTCA
1 AAGCCCACAAGTCAGTGGCATC--C--TTTCA
* *
4823220 AAGCCTATAAGTCAGTGGCA-CCTTTTCA
1 AAGCCCACAAGTCAGTGGCATCC-TTTCA
* * * *
4823248 AAGTCGACAAGTCAGTAGCATCCCTTT-T
1 AAGCCCACAAGTCAGTGGCAT-CCTTTCA
* * * *
4823276 AAGTCCACAACTCCGTTGC-TCCCTTTCA
1 AAGCCCACAAGTCAGTGGCAT-CCTTTCA
* * * *
4823304 AAGCTCACAAGTTAGTGGCA-CGCCTCCA
1 AAGCCCACAAGTCAGTGGCATC-CTTTCA
*
4823332 AAGCCCACAAGTCAGTGGTATCCTTCTCTA
1 AAGCCCACAAGTCAGTGGCATCCTT-TC-A
* *
4823362 AAGCCTACACAAGTCGGTGGCAACCATTTCCA
1 AAGCC--CACAAGTCAGTGGCATCC-TTT-CA
* * *
4823394 AAGTCCACACAAGTCCGTGGTAACCCCTTTCA
1 AAG-CC-CACAAGTCAGTGG-CA-TCCTTTCA
4823426 AAGCCCA
1 AAGCCCA
4823433 TACAAGTTTG
Statistics
Matches: 310, Mismatches: 54, Indels: 42
0.76 0.13 0.10
Matches are distributed among these distances:
27 8 0.03
28 186 0.60
29 30 0.10
30 10 0.03
31 4 0.01
32 57 0.18
33 13 0.04
34 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (28 bp):
AAGCCCACAAGTCAGTGGCATCCTTTCA
Found at i:4823086 original size:56 final size:55
Alignment explanation
Indices: 4822467--4823413 Score: 299
Period size: 56 Copynumber: 17.0 Consensus size: 55
4822457 TTTGTAGCAT
* * * ** * * *
4822467 CCTTTT-AAGTCCACAACTCCGTGGCAT-CTTTTTAAGTCCACAACTCCGTGGCA
1 CCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * * * *
4822520 CCCTTTTAAGGTCCACAAGTCCA-TGACACCCTTT-TAAGTCCACAAGTCCGTGGCA
1 -CCTTTTAAAGCCCACAAGT-CAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * * *
4822575 TCCTTTT-AAGTCCACAAGTCCA-TGGTATCCTTT-TAAGTCCC-TAA-TTATGTGGTA
1 -CCTTTTAAAGCCCACAAGT-CAGTGGCATCCTTTCAAAG-CCCACAAGTCA-GTGGCA
* * ** * * *
4822629 CTCTTTT-AAGTCCACAAGTCTGTGGCAT-CTTTTTAAGTCCACAAATCCGTGGCA
1 C-CTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * ** * * **
4822683 CCTTTTTAAAGTCCATAACTCCA-TGGCACCCTTT-TGAGTCCACAACTTTGTGGCA
1 CC-TTTTAAAGCCCACAAGT-CAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * * * * *
4822738 CCCTTTT-AAGTCCATAACTCTA-TGGCACCCTTT-TAAGTCCACAACTCCGTGGCA
1 -CCTTTTAAAGCCCACAAGTC-AGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
** * * * * * * * *
4822792 CCCTTTTAAAGTACACAACTCTGTGGCAACCTTTTAAAGTCTACAACTCCA-TGACA
1 -CCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGT-CAGTGGCA
* * * * * * * *
4822848 CCCTTTTAAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCCGTGGCA
1 -CCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * * ** * * *
4822903 CCCCTTT-AAGTCCACAACTCCGTGGCATCCTTTTAAAGTTCACAACTCTGTAGCA
1 -CCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * * *
4822958 TCCTTTT-AAGTCCACAACTCCA-TGGCATCCTTTC-ATGTCCATAACTTC-GTGGCA
1 -CCTTTTAAAGCCCACAAGT-CAGTGGCATCCTTTCAAAGCCCACAA-GTCAGTGGCA
** * * *
4823012 TTTTTTTAAGCCCACAAGTTAGTGGCA-CCTTTCCAAAGCCCACAAGTTAGTGGCA
1 CCTTTTAAAGCCCACAAGTCAGTGGCATCCTTT-CAAAGCCCACAAGTCAGTGGCA
* * * *
4823067 CCGTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGTCAATAAGTCAATGGCA
1 CC-TTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
4823123 CCCTTTCAAAGCCCACAAGTAAGTGACATCCTTTCAAAGTCCACAAGTCAGTGGTA
1 -CCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
* * * * *
4823179 TCCTTTCAAAAGCCTACAAGTTAGTGGCATCTTCTTTTTCAAAGCCTATAAGTCAGTGGCA
1 -CCTTT-TAAAGCCCACAAGTCAGTGGCATC--C--TTTCAAAGCCCACAAGTCAGTGGCA
* * * * * * * * *
4823240 CCTTTTCAAAGTCGACAAGTCAGTAGCATCCCTTT-TAAGTCCACAACTCCGTTGCTC
1 CCTTTT-AAAGCCCACAAGTCAGTGGCAT-CCTTTCAAAGCCCACAAGTCAGTGGC-A
* * * * * *
4823297 CCTTTCAAAGCTCACAAGTTAGTGGCA-CGCCTCCAAAGCCCACAAGTCAGTGGTA
1 CCTTTTAAAGCCCACAAGTCAGTGGCATC-CTTTCAAAGCCCACAAGTCAGTGGCA
* * *
4823352 TCCTTCTCTAAAGCCTACACAAGTCGGTGGCAACCATTTCCAAAGTCCACACAAGTCCGTGG
1 -CCTT-T-TAAAGCC--CACAAGTCAGTGGCATCC-TTT-CAAAG-CC-CACAAGTCAGTGG
4823414 TAACCCCTTT
Statistics
Matches: 707, Mismatches: 134, Indels: 94
0.76 0.14 0.10
Matches are distributed among these distances:
53 21 0.03
54 182 0.26
55 183 0.26
56 197 0.28
57 37 0.05
58 5 0.01
59 2 0.00
60 37 0.05
61 24 0.03
62 5 0.01
63 2 0.00
64 12 0.02
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (55 bp):
CCTTTTAAAGCCCACAAGTCAGTGGCATCCTTTCAAAGCCCACAAGTCAGTGGCA
Found at i:4823239 original size:173 final size:170
Alignment explanation
Indices: 4823019--4823432 Score: 413
Period size: 173 Copynumber: 2.4 Consensus size: 170
4823009 GCATTTTTTT
* *
4823019 AAGCCCACAAGTTAGTGGCACCTTTCCAAAGCCCACAAGTTAGTGGCACCGTTTT-AAAGCCCAC
1 AAGCCTACAAGTTAGTGGCACCTTTCCAAAGCCCACAAGTCAGTGGCACC-TTTTCAAAGCCCAC
* * *
4823083 AAGTCAGTGGCAT-CCTTTCAAAGTCAATAAGTCAATGGCACCCTTTCAAAGCCCACAAGTAAGT
65 AAGTCAGTAGCATCCCTTT-AAAGTCAACAACTCAATGGCACCCTTTCAAAGCCCACAAGTAAGT
* * *
4823147 GACATC-CTTTCAAAGTCCACAAGTCAGTGGTATCCTT-TCAA
129 GACA-CGCCTCCAAAGCCCACAAGTCAGTGGTATCCTTCTCAA
* * * *
4823188 AAGCCTACAAGTTAGTGGCATCTTCTTTTTCAAAGCCTATAAGTCAGTGGCACCTTTTCAAAGTC
1 AAGCCTACAAGTTAGTGGCA-C--C-TTTCCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCC
* * * ** * * * *
4823253 GACAAGTCAGTAGCATCCCTTTTAAGTCCACAACTCCGTTGCTCCCTTTCAAAGCTCACAAGTTA
62 CACAAGTCAGTAGCATCCCTTTAAAGTCAACAACTCAATGGCACCCTTTCAAAGCCCACAAGTAA
* *
4823318 GTGGCACGCCTCCAAAGCCCACAAGTCAGTGGTATCCTTCTCTA
127 GTGACACGCCTCCAAAGCCCACAAGTCAGTGGTATCCTTCTCAA
** * * *
4823362 AAGCCTACACAAGTCGGTGGCAACCATTTCCAAAGTCCACACAAGTCCGTGGTAACCCCTTTCAA
1 AAGCCT--ACAAGTTAGTGGC-ACC-TTTCCAAAG-CC-CACAAGTCAGTGG-CA-CCTTTTCAA
4823427 AGCCCA
58 AGCCCA
4823433 TACAAGTTTG
Statistics
Matches: 196, Mismatches: 34, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
169 19 0.10
170 1 0.01
172 6 0.03
173 109 0.56
174 23 0.12
175 2 0.01
176 22 0.11
177 2 0.01
178 12 0.06
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (170 bp):
AAGCCTACAAGTTAGTGGCACCTTTCCAAAGCCCACAAGTCAGTGGCACCTTTTCAAAGCCCACA
AGTCAGTAGCATCCCTTTAAAGTCAACAACTCAATGGCACCCTTTCAAAGCCCACAAGTAAGTGA
CACGCCTCCAAAGCCCACAAGTCAGTGGTATCCTTCTCAA
Found at i:4823374 original size:32 final size:32
Alignment explanation
Indices: 4823328--4823418 Score: 91
Period size: 32 Copynumber: 2.9 Consensus size: 32
4823318 GTGGCACGCC
*
4823328 TCCAAAG-CC-CACAAGTCAGTGGTATCC-TT
1 TCCAAAGTCCACACAAGTCAGTGGTAACCATT
* * *
4823357 CTCTAAAG-CCTACACAAGTCGGTGGCAACCATT
1 -TCCAAAGTCC-ACACAAGTCAGTGGTAACCATT
*
4823390 TCCAAAGTCCACACAAGTCCGTGGTAACC
1 TCCAAAGTCCACACAAGTCAGTGGTAACC
4823419 CCTTTCAAAG
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
30 8 0.16
32 38 0.76
33 4 0.08
ACGTcount: A:0.30, C:0.32, G:0.18, T:0.21
Consensus pattern (32 bp):
TCCAAAGTCCACACAAGTCAGTGGTAACCATT
Found at i:4823428 original size:32 final size:32
Alignment explanation
Indices: 4823328--4823439 Score: 88
Period size: 32 Copynumber: 3.6 Consensus size: 32
4823318 GTGGCACGCC
* * *
4823328 TCCAAAG-CC-CACAAGTCAGTGGTATCC-TT
1 TCCAAAGCCCACACAAGTCCGTGGCAACCATT
* * *
4823357 CTCTAAAGCCTACACAAGTCGGTGGCAACCATT
1 -TCCAAAGCCCACACAAGTCCGTGGCAACCATT
* * *
4823390 TCCAAAGTCCACACAAGTCCGTGGTAACCCCTT
1 TCCAAAGCCCACACAAGTCCGTGGCAA-CCATT
*
4823423 T-CAAAGCCCATACAAGT
1 TCCAAAGCCCACACAAGT
4823440 TTGTGGCATT
Statistics
Matches: 65, Mismatches: 13, Indels: 6
0.77 0.15 0.07
Matches are distributed among these distances:
30 6 0.09
31 1 0.02
32 51 0.78
33 7 0.11
ACGTcount: A:0.30, C:0.32, G:0.16, T:0.21
Consensus pattern (32 bp):
TCCAAAGCCCACACAAGTCCGTGGCAACCATT
Found at i:4826162 original size:97 final size:97
Alignment explanation
Indices: 4826003--4826241 Score: 320
Period size: 97 Copynumber: 2.5 Consensus size: 97
4825993 AATTTTATTT
* * * * ** **
4826003 ATCGGGGATACTCCAACTCTATTCCTCCG-AGAGGATATTCCAATTCCGCT-TTTAAACACATCA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAAG-GGATACTCCAACCCCGCTCTTT-AATGCATCA
4826066 AAGTTTAAATCTTATTATCACTTAAATTGTCACC
64 AAGTTTAAATCTTATTATCACTTAAATTGTCACC
**
4826100 ATCGGGGACACTTTAACCCCATTCCTCCGAAGGGATACTCCAACCCCGCTCTTTAATGCATCAAA
1 ATCGGGGACACTCCAACCCCATTCCTCCGAAGGGATACTCCAACCCCGCTCTTTAATGCATCAAA
* *
4826165 GTTTAAATCTTATTTTCACTTAAATTGTCATC
66 GTTTAAATCTTATTATCACTTAAATTGTCACC
* *
4826197 ATCGGGGACACTCCAACCCCATTCCTCCGAGGGGATACTCTAACC
1 ATCGGGGACACTCCAACCCCATTCCTCCGAAGGGATACTCCAACC
4826242 TCGTTTTTCA
Statistics
Matches: 124, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
97 119 0.96
98 5 0.04
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.30
Consensus pattern (97 bp):
ATCGGGGACACTCCAACCCCATTCCTCCGAAGGGATACTCCAACCCCGCTCTTTAATGCATCAAA
GTTTAAATCTTATTATCACTTAAATTGTCACC
Found at i:4831003 original size:22 final size:23
Alignment explanation
Indices: 4830992--4831038 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
4830982 GTAAAAGCAT
4830992 AAAAAATG-AAAAGAAAAACAAA
1 AAAAAATGCAAAAGAAAAACAAA
* *
4831014 AAAAAATGCAAAAGCAAAATAAA
1 AAAAAATGCAAAAGAAAAACAAA
4831037 AA
1 AA
4831039 GGGAATAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.79, C:0.06, G:0.09, T:0.06
Consensus pattern (23 bp):
AAAAAATGCAAAAGAAAAACAAA
Found at i:4832837 original size:97 final size:97
Alignment explanation
Indices: 4832720--4832954 Score: 398
Period size: 97 Copynumber: 2.4 Consensus size: 97
4832710 CGAGGATACT
*
4832720 CCAACCCTATTCCTCCGAGGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATATTA
1 CCAACCCCATTCCTCCGAGGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATATTA
* *
4832785 TTCTCACTTAAATTGTTACCATCGGGGACACT
66 TTCTCACTTAAATTGTCACCATCGGGGACACG
* *
4832817 TCAACCCCATTCCTCCGAGGGGATACTCCAACCCTGCTCTTAAACACATCAAAGTTTAAATATTA
1 CCAACCCCATTCCTCCGAGGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATATTA
*
4832882 TTCTCACTTAAATTGTCATCATCGGGGACACG
66 TTCTCACTTAAATTGTCACCATCGGGGACACG
* *
4832914 CCAACCCCATTCCTCCGAGAGGATACTCCAACCCTGTTTTT
1 CCAACCCCATTCCTCCGAGGGGATACTCCAACCCTGCTTTT
4832955 CAATCAAAAT
Statistics
Matches: 128, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
97 128 1.00
ACGTcount: A:0.29, C:0.30, G:0.13, T:0.29
Consensus pattern (97 bp):
CCAACCCCATTCCTCCGAGGGGATACTCCAACCCTGCTTTTAAACACATCAAAGTTTAAATATTA
TTCTCACTTAAATTGTCACCATCGGGGACACG
Found at i:4841561 original size:13 final size:14
Alignment explanation
Indices: 4841534--4841566 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
4841524 ATAAAAAAAT
*
4841534 AAATGTAAATATTA
1 AAATTTAAATATTA
4841548 AAATTTAAAT-TTA
1 AAATTTAAATATTA
4841561 AAATTT
1 AAATTT
4841567 TTAAAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
AAATTTAAATATTA
Found at i:4846394 original size:14 final size:14
Alignment explanation
Indices: 4846377--4846425 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
4846367 TATTTTATTT
4846377 AAAT-TTAATTATAAA
1 AAATATTAA-TAT-AA
*
4846392 AATATATTAATATAT
1 AA-ATATTAATATAA
4846407 AAATATTAATATAA
1 AAATATTAATATAA
4846421 AAATA
1 AAATA
4846426 ATATTTTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 16 0.53
15 5 0.17
16 5 0.17
17 4 0.13
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATATTAATATAA
Found at i:4848976 original size:16 final size:15
Alignment explanation
Indices: 4848955--4848984 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
4848945 AAAAAATTGA
4848955 TCAATTTTAATAAATT
1 TCAATTTTAA-AAATT
4848971 TCAATTTTAAAAAT
1 TCAATTTTAAAAAT
4848985 AGGAAAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
TCAATTTTAAAAATT
Found at i:4849630 original size:19 final size:19
Alignment explanation
Indices: 4849606--4849645 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
4849596 AAACATATAA
4849606 ATATGACCGTTAAAAAATT
1 ATATGACCGTTAAAAAATT
** *
4849625 ATATGATTGTTGAAAAATT
1 ATATGACCGTTAAAAAATT
4849644 AT
1 AT
4849646 GTATCTGTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (19 bp):
ATATGACCGTTAAAAAATT
Found at i:4850071 original size:10 final size:10
Alignment explanation
Indices: 4850019--4850074 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
4850009 ATATAAAACT
4850019 AAAAT-ATTA
1 AAAATAATTA
*
4850028 AAAATTA-TA
1 AAAATAATTA
** *
4850037 ATTATAATTT
1 AAAATAATTA
4850047 AAAATAAATTA
1 AAAAT-AATTA
4850058 AAAATAATTA
1 AAAATAATTA
4850068 AAAATAA
1 AAAATAA
4850075 GCTTAATTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
9 11 0.30
10 17 0.46
11 9 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
AAAATAATTA
Found at i:4856052 original size:24 final size:24
Alignment explanation
Indices: 4856015--4856077 Score: 62
Period size: 23 Copynumber: 2.7 Consensus size: 24
4856005 TCAAATATTT
* *
4856015 ATTTAATAAAAAAAAATTAT-TATA
1 ATTTAATTATAAAAAATTATATA-A
4856039 ATTTAATTAT-AAAAA-TATATAA
1 ATTTAATTATAAAAAATTATATAA
4856061 ATATTAA-TATAAAAAAT
1 AT-TTAATTATAAAAAAT
4856078 ATTTTTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
22 9 0.27
23 16 0.48
24 8 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
ATTTAATTATAAAAAATTATATAA
Found at i:4856105 original size:11 final size:11
Alignment explanation
Indices: 4856078--4856111 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
4856068 TATAAAAAAT
4856078 ATTTTTTAA-A
1 ATTTTTTAATA
*
4856088 ATATTTTAATA
1 ATTTTTTAATA
4856099 ATTTTTTAATA
1 ATTTTTTAATA
4856110 AT
1 AT
4856112 AAAAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 8 0.38
11 13 0.62
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
ATTTTTTAATA
Found at i:4857497 original size:31 final size:31
Alignment explanation
Indices: 4857440--4857500 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
4857430 AACAATAACA
* * *
4857440 CAAAAACAAAATCAAGGATTATATTTTTTTC
1 CAAAAACAAAATCAAGAATCACATTTTTTTC
*
4857471 CAAAAACAAAATCAAGAATCGCATTTTTTT
1 CAAAAACAAAATCAAGAATCACATTTTTTT
4857501 TTCGATATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.33
Consensus pattern (31 bp):
CAAAAACAAAATCAAGAATCACATTTTTTTC
Found at i:4857624 original size:35 final size:35
Alignment explanation
Indices: 4857568--4857634 Score: 98
Period size: 35 Copynumber: 1.9 Consensus size: 35
4857558 TTTTTGAAAA
**
4857568 AACAAAACCAAAAATTGCTTTTTCTCCGATATTTG
1 AACAAAACCAAAAATCACTTTTTCTCCGATATTTG
* *
4857603 AACAAAACCAAAAATCACTTTTTTTCTGATAT
1 AACAAAACCAAAAATCACTTTTTCTCCGATAT
4857635 CTGACTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 28 1.00
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.34
Consensus pattern (35 bp):
AACAAAACCAAAAATCACTTTTTCTCCGATATTTG
Found at i:4858557 original size:17 final size:17
Alignment explanation
Indices: 4858521--4858557 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
4858511 AGAAAGTAAT
*
4858521 ATTCGTTAAATATCTGA
1 ATTCGTTAAATATCTAA
*
4858538 ATTCGTTAAATATTTAA
1 ATTCGTTAAATATCTAA
4858555 ATT
1 ATT
4858558 TATTAGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (17 bp):
ATTCGTTAAATATCTAA
Found at i:4861598 original size:21 final size:21
Alignment explanation
Indices: 4861574--4861626 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
4861564 TTCAACAATT
4861574 TGTATCGATACAATAAG-GCAA
1 TGTATCGATACAATAAGTG-AA
*
4861595 TGTATCGATAC-TTAAGTGAA
1 TGTATCGATACAATAAGTGAA
*
4861615 TATATCGATACA
1 TGTATCGATACA
4861627 TGCCTGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.30
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:4878831 original size:28 final size:27
Alignment explanation
Indices: 4878786--4878848 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 27
4878776 CCCATTAGTC
4878786 AGTGGCACCTTTTCGAAGTCCACAAGTT
1 AGTGGCACCTTTTCGAAGTCCACAA-TT
*
4878814 AGTGGCATCTCTTT-GAAGTCCACAATT
1 AGTGGCACCT-TTTCGAAGTCCACAATT
4878841 AGTGGCAC
1 AGTGGCAC
4878849 TTGCTGTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 9 0.28
28 20 0.62
29 3 0.09
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (27 bp):
AGTGGCACCTTTTCGAAGTCCACAATT
Found at i:4883618 original size:16 final size:14
Alignment explanation
Indices: 4883570--4883621 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 14
4883560 CATCCTTCGC
4883570 AAAAAAAAATAAAGCA
1 AAAAAAAAATAAA--A
**
4883586 AAAAAAAACCAAAA
1 AAAAAAAAATAAAA
4883600 AAAACAAAAATAAATA
1 AAAA-AAAAATAAA-A
4883616 AAAAAA
1 AAAAAA
4883622 GTGGGAAGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 5 0.17
15 9 0.30
16 16 0.53
ACGTcount: A:0.85, C:0.08, G:0.02, T:0.06
Consensus pattern (14 bp):
AAAAAAAAATAAAA
Found at i:4884952 original size:28 final size:27
Alignment explanation
Indices: 4884919--4884981 Score: 99
Period size: 28 Copynumber: 2.3 Consensus size: 27
4884909 CCCATTAGTC
4884919 AGTGGCACCTCTTCGAAGTCCACAAGTT
1 AGTGGCACCTCTTCGAAGTCCACAA-TT
* *
4884947 AGTGGCATCTCTTTGAAGTCCACAATT
1 AGTGGCACCTCTTCGAAGTCCACAATT
4884974 AGTGGCAC
1 AGTGGCAC
4884982 TTGCTGTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
27 9 0.28
28 23 0.72
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.27
Consensus pattern (27 bp):
AGTGGCACCTCTTCGAAGTCCACAATT
Found at i:4885200 original size:32 final size:32
Alignment explanation
Indices: 4885156--4885287 Score: 160
Period size: 32 Copynumber: 4.1 Consensus size: 32
4885146 GTGGAGAACC
*
4885156 CTTTTTAAAGCCCACACAAG-CTGGTGGTAAC-
1 CTTTTTAAAGCCCACACAAGTC-GGTGGCAACT
* *
4885187 CTTCTTTAAAGCCCACACAAGTCGATGACAACT
1 CTT-TTTAAAGCCCACACAAGTCGGTGGCAACT
* *
4885220 CTTCTTAAAGCCCACACAAGTCGGTAGCAACT
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACT
* * *
4885252 CTTTTAAAAGCCCACACAAGTTGGTGGCATCT
1 CTTTTTAAAGCCCACACAAGTCGGTGGCAACT
4885284 CTTT
1 CTTT
4885288 CTAAGTCCAA
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
31 3 0.03
32 79 0.92
33 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (32 bp):
CTTTTTAAAGCCCACACAAGTCGGTGGCAACT
Found at i:4885608 original size:52 final size:52
Alignment explanation
Indices: 4885546--4886023 Score: 355
Period size: 52 Copynumber: 9.0 Consensus size: 52
4885536 TTTGTCGCAC
4885546 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * * * **
4885598 CTTTAAGTCCAATGTTGCTAGCATTGAATCAGCATATTGGCACCTTCTTTTTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCAT
* * ** *
4885651 C-TCAAGTCCAACATCGCTGGCCTTGAATCAATATATTAGCACCTTTATCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * ** * ** * ** *
4885702 TTTTAAGCCCAACGTCACTGATCTTGAATCAACACTTTAGCACTCTTCTCACCTTTATCCT
1 CTTTAAGTCCAATATCGCTGGCCTTGAAT-----C---AGCA-TATTGGCACCTTTATCAT
* * * *
4885763 CTTTAAGTCCAATATTGTTAGCCTTGAATCAGCACATTGGCACCTTCT-TC-T
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCAT
* * * * *
4885814 -TTCTCAAATCCAACATCGCTGGCCTTAAATTAGCATATTGGAACCTTTATCAT
1 CTT-T-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * * *
4885867 CTTTAAGTCCAATGTTG-TAGGCTTTGAATCAGCACATTGGCACCTTCT-TC-T
1 CTTTAAGTCCAATATCGCT-GGCCTTGAATCAGCATATTGGCACCTT-TATCAT
*
4885918 -TTCTCAAGTCCAACATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
1 CTT-T-AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
* * *
4885971 CTTTAAGCCCAATGTCGCTGACCTTGAATCAGCACT-TTGGCACTCTTT-TCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCA-TATTGGCAC-CTTTATCAT
4886023 C
1 C
4886024 ATTATCATCT
Statistics
Matches: 326, Mismatches: 73, Indels: 54
0.72 0.16 0.12
Matches are distributed among these distances:
50 4 0.01
51 10 0.03
52 251 0.77
53 20 0.06
54 4 0.01
56 1 0.00
57 1 0.00
60 2 0.01
61 33 0.10
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCAT
Found at i:4885862 original size:269 final size:269
Alignment explanation
Indices: 4885553--4886042 Score: 784
Period size: 269 Copynumber: 1.8 Consensus size: 269
4885543 CACCTTTAAG
* * *
4885553 TCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCATCTTTAAGTCCAATGTTGCTA
1 TCCAACATCGCTGGCCTTAAATCAGCATATTGGAACCTTTATCATCTTTAAGTCCAATGTTG-TA
* *
4885618 -GCATTGAATCAGCATATTGGCACCTTCTTTTTTCTCAAGTCCAACATCGCTGGCCTTGAATCAA
65 GGCATTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCCAACATCGCTGGCCTTGAATCAA
* * *
4885682 TATATTAGCACCTTTATCATTTTTAAGCCCAACGTCACTGATCTTGAATCAACACTTTAGCACTC
130 CATATTAGCACCTTTATCATCTTTAAGCCCAACGTCACTGACCTTGAATCAACACTTTAGCACTC
* *
4885747 TTCTCACCTTTATCCTCTTTAAGTCCAATATTGTTAGCCTTGAATCAGCACATTGGCACCTTCTT
195 TTCTCACCATTATCATCTTTAAGTCCAATATTGTTAGCCTTGAATCAGCACATTGGCACCTTCTT
4885812 CTTTCTCAAA
260 CTTTCTCAAA
*
4885822 TCCAACATCGCTGGCCTTAAATTAGCATATTGGAACCTTTATCATCTTTAAGTCCAATGTTGTAG
1 TCCAACATCGCTGGCCTTAAATCAGCATATTGGAACCTTTATCATCTTTAAGTCCAATGTTGTAG
* *
4885887 GCTTTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCCAACATCGCTGGCCTTGAATCAGC
66 GCATTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCCAACATCGCTGGCCTTGAATCAAC
* * * * *
4885952 ATATTGGCACCTTTATCATCTTTAAGCCCAATGTCGCTGACCTTGAATCAGCACTTTGGCACTCT
131 ATATTAGCACCTTTATCATCTTTAAGCCCAACGTCACTGACCTTGAATCAACACTTTAGCACTCT
* *
4886017 TTTCATCATTATCATCTTTAAGTCCA
196 TCTCACCATTATCATCTTTAAGTCCA
4886043 GTGTTACAGG
Statistics
Matches: 200, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
268 2 0.01
269 198 0.99
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (269 bp):
TCCAACATCGCTGGCCTTAAATCAGCATATTGGAACCTTTATCATCTTTAAGTCCAATGTTGTAG
GCATTGAATCAGCACATTGGCACCTTCTTCTTTCTCAAGTCCAACATCGCTGGCCTTGAATCAAC
ATATTAGCACCTTTATCATCTTTAAGCCCAACGTCACTGACCTTGAATCAACACTTTAGCACTCT
TCTCACCATTATCATCTTTAAGTCCAATATTGTTAGCCTTGAATCAGCACATTGGCACCTTCTTC
TTTCTCAAA
Found at i:4885896 original size:104 final size:105
Alignment explanation
Indices: 4885752--4886013 Score: 395
Period size: 104 Copynumber: 2.5 Consensus size: 105
4885742 CACTCTTCTC
* * *
4885752 ACCTTTATCCTCTTTAAGTCCAATATTGTTA-GCCTTGAATCAGCACATTGGCACCTTCTTCTTT
1 ACCTTTATCATCTTTAAGTCCAATGTTGCTAGGCCTTGAATCAGCACATTGGCACCTTCTTCTTT
*
4885816 CTCAAATCCAACATCGCTGGCCTTAAATTAGCATATTGGA
66 CTCAAATCCAACATCGCTGGCCTTAAATCAGCATATTGGA
*
4885856 ACCTTTATCATCTTTAAGTCCAATGTTG-TAGGCTTTGAATCAGCACATTGGCACCTTCTTCTTT
1 ACCTTTATCATCTTTAAGTCCAATGTTGCTAGGCCTTGAATCAGCACATTGGCACCTTCTTCTTT
* * *
4885920 CTCAAGTCCAACATCGCTGGCCTTGAATCAGCATATTGGC
66 CTCAAATCCAACATCGCTGGCCTTAAATCAGCATATTGGA
* * * *
4885960 ACCTTTATCATCTTTAAGCCCAATGTCGCT-GACCTTGAATCAGCACTTTGGCAC
1 ACCTTTATCATCTTTAAGTCCAATGTTGCTAGGCCTTGAATCAGCACATTGGCAC
4886014 TCTTTTCATC
Statistics
Matches: 144, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
103 2 0.01
104 141 0.98
105 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.34
Consensus pattern (105 bp):
ACCTTTATCATCTTTAAGTCCAATGTTGCTAGGCCTTGAATCAGCACATTGGCACCTTCTTCTTT
CTCAAATCCAACATCGCTGGCCTTAAATCAGCATATTGGA
Found at i:4885896 original size:165 final size:162
Alignment explanation
Indices: 4885586--4885914 Score: 417
Period size: 165 Copynumber: 2.0 Consensus size: 162
4885576 AGCATATTGG
* * *
4885586 CACCTTTATCATCTTTAAGTCCAATGTTGCTAGCATTGAATCAGCATATTGGCACCTTCTTTTTT
1 CACCTTTATCATCTTTAAGTCCAATATTGCTAGCATTGAATCAGCACATTGGCACCTTCTTCTTT
* * * * *
4885651 CTCAAGTCCAACATCGCTGGCCTTGAATCAATATATTAGCACCTTTATCATTTTTAAGCCCAACG
66 CTCAAATCCAACATCGCTGGCCTTAAATCAACATATTAGAACCTTTATCATCTTTAAGCCCAACG
* *
4885716 TCACTGATCTTGAATCAACACTTTAGCACTCTTCT
131 T--CTGAGCTTGAATCAACACATTAGCAC-CTTCT
* * *
4885751 CACCTTTATCCTCTTTAAGTCCAATATTGTTAGCCTTGAATCAGCACATTGGCACCTTCTTCTTT
1 CACCTTTATCATCTTTAAGTCCAATATTGCTAGCATTGAATCAGCACATTGGCACCTTCTTCTTT
* * * * *
4885816 CTCAAATCCAACATCGCTGGCCTTAAATTAGCATATTGGAACCTTTATCATCTTTAAGTCCAATG
66 CTCAAATCCAACATCGCTGGCCTTAAATCAACATATTAGAACCTTTATCATCTTTAAGCCCAACG
* *
4885881 T-TGTAGGCTTTGAATCAGCACATTGGCACCTTCT
131 TCTG-A-GC-TTGAATCAACACATTAGCACCTTCT
4885915 TCTTTCTCAA
Statistics
Matches: 141, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
162 2 0.01
163 1 0.01
164 6 0.04
165 132 0.94
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (162 bp):
CACCTTTATCATCTTTAAGTCCAATATTGCTAGCATTGAATCAGCACATTGGCACCTTCTTCTTT
CTCAAATCCAACATCGCTGGCCTTAAATCAACATATTAGAACCTTTATCATCTTTAAGCCCAACG
TCTGAGCTTGAATCAACACATTAGCACCTTCT
Found at i:4893513 original size:20 final size:21
Alignment explanation
Indices: 4893488--4893528 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
4893478 ACCAAGGTTT
4893488 GTATTAATACAACC-ATAAAA
1 GTATTAATACAACCTATAAAA
*
4893508 GTATTAATACATCCTATAAAA
1 GTATTAATACAACCTATAAAA
4893529 TTTTGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.51, C:0.15, G:0.05, T:0.29
Consensus pattern (21 bp):
GTATTAATACAACCTATAAAA
Found at i:4895281 original size:11 final size:11
Alignment explanation
Indices: 4895249--4895282 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
4895239 TCTACAATAA
4895249 TTTTTAAATTT
1 TTTTTAAATTT
*
4895260 TTTATTCAATTT
1 TTT-TTAAATTT
4895272 TTTTTAAATTT
1 TTTTTAAATTT
4895283 CAAATCTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTTAAATTT
Found at i:4895434 original size:42 final size:43
Alignment explanation
Indices: 4895369--4895451 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
4895359 ATATTTTATA
* *
4895369 AATATTTATTATTTAAATAATAAAATATATTTTTG-TTAATATT
1 AATATTTATTATTAAAATAATAAAA-ATATTTATGTTTAATATT
4895412 AATAGTTT-TTATTAAAAT-ATAAAAATATTTATGTTTAATA
1 AATA-TTTATTATTAAAATAATAAAAATATTTATGTTTAATA
4895452 AAACTCAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
41 8 0.22
42 12 0.33
43 13 0.36
44 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.51
Consensus pattern (43 bp):
AATATTTATTATTAAAATAATAAAAATATTTATGTTTAATATT
Found at i:4897122 original size:18 final size:19
Alignment explanation
Indices: 4897091--4897130 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
4897081 TTTAATATTA
4897091 TTTTAAATAATAATATAAAT
1 TTTTAAAT-ATAATATAAAT
*
4897111 TTTTAAAT-TAATTTAAAT
1 TTTTAAATATAATATAAAT
4897129 TT
1 TT
4897131 AAATCAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
20 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAAATATAATATAAAT
Found at i:4897384 original size:17 final size:17
Alignment explanation
Indices: 4897339--4897390 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
4897329 TTCAATCAAC
4897339 ATTAAAATTT-ATTCATAA
1 ATTAAAATTTAATT-A-AA
*
4897357 ATCAAATATTTAATTAAA
1 ATTAAA-ATTTAATTAAA
*
4897375 ATTAAAATTTATTTAA
1 ATTAAAATTTAATTAA
4897391 TATTTAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
17 9 0.31
18 12 0.41
19 5 0.17
20 3 0.10
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTAAAATTTAATTAAA
Found at i:4897525 original size:15 final size:13
Alignment explanation
Indices: 4897509--4897533 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4897499 TTTGAATAAT
4897509 ATATTTTTATTTA
1 ATATTTTTATTTA
4897522 ATATTTTTATTT
1 ATATTTTTATTT
4897534 TATTATAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
ATATTTTTATTTA
Found at i:4902297 original size:20 final size:20
Alignment explanation
Indices: 4902250--4902324 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
4902240 AAAAAGACAT
*
4902250 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
4902269 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
4902290 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
4902310 AATGTATCGATACAT
1 AATGTATCGATACAT
4902325 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:4902318 original size:40 final size:39
Alignment explanation
Indices: 4902247--4902324 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
4902237 GGTAAAAAGA
* *
4902247 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
4902286 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
4902325 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:4902932 original size:28 final size:28
Alignment explanation
Indices: 4902865--4902990 Score: 162
Period size: 28 Copynumber: 4.4 Consensus size: 28
4902855 TTGACTTGCA
* **
4902865 TGGGCTTTAAAAGGGTGCCACTGACTTGCG
1 TGGGCTTTGAAAGAATGCCACTGAC-T-CG
*
4902895 TGGGCTTTGAAAGAATGCCACTAACTCG
1 TGGGCTTTGAAAGAATGCCACTGACTCG
* *
4902923 TGGGCTTTGAAAGGATGCCACTGACTTG
1 TGGGCTTTGAAAGAATGCCACTGACTCG
* *
4902951 TGGGCTTTGAAAGAGTGCCACTGACTTG
1 TGGGCTTTGAAAGAATGCCACTGACTCG
4902979 TGGGCTTTGAAA
1 TGGGCTTTGAAA
4902991 AGGTACCACT
Statistics
Matches: 87, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
28 65 0.75
29 1 0.01
30 21 0.24
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (28 bp):
TGGGCTTTGAAAGAATGCCACTGACTCG
Found at i:4903042 original size:32 final size:32
Alignment explanation
Indices: 4902838--4903423 Score: 801
Period size: 32 Copynumber: 18.8 Consensus size: 32
4902828 ACAGTGGTGA
** **
4902838 TTTGAAAAGGGTTGCCATTGACTTGCATGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
4902870 TTT-AAAAGGG-TGCCACTGACTTGCGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
** ** *
4902900 TTTG-AAA-GAATGCCACTAAC-T-CGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
4902928 TTTG-AAA-GGATGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
4902956 TTTG-AAAGAG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
4902984 TTTGAAAA-GG-TACCACTGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
4903014 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
4903046 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
4903078 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
4903110 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
4903142 TTTGAAAATGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
4903174 TTTGAAATGGGTTGCCTCCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
4903206 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
4903238 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
4903270 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
4903302 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
4903334 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
4903366 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* * *
4903398 TTTGAAATGGG-TGCCACAGAGTTGTG
1 TTTGAAAAGGGTTGCCACCGACTTGTG
4903424 GATTTTAAAA
Statistics
Matches: 521, Mismatches: 25, Indels: 17
0.93 0.04 0.03
Matches are distributed among these distances:
28 71 0.14
29 7 0.01
30 48 0.09
31 22 0.04
32 373 0.72
ACGTcount: A:0.19, C:0.18, G:0.33, T:0.30
Consensus pattern (32 bp):
TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
Found at i:4903503 original size:27 final size:27
Alignment explanation
Indices: 4903406--4904499 Score: 1783
Period size: 27 Copynumber: 40.0 Consensus size: 27
4903396 GCTTTGAAAT
* *
4903406 GGGTGCCACAGAGTTGTGGATTTTAAAA
1 GGGTGCCACGGAGTTGTGGA-CTTAAAA
*
4903434 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
4903461 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
4903489 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903516 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903543 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
4903570 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903597 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
*
4903625 GGGTGCCGCGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
4903652 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903679 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
* *
4903707 GGATGCCGCGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903734 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903761 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
4903788 GGATGCCACGAAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903815 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
4903843 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4903870 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
4903897 GGTTGCCACAGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
*
4903925 GGGTGCCACAGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
** *
4903952 GATATGCCACGGAGTTGTGGATTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
*
4903980 GGGTGTCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
4904007 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904034 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
* *
4904062 GGGTGCCACGAAGTTATGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904089 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904116 GGGTGCCACGGAGTTGTGGACTTAAAAA
1 GGGTGCCACGGAGTTGTGGACTT-AAAA
4904144 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
4904171 GAGATGCCACGGAGTTATGGACTTAAAA
1 G-GGTGCCACGGAGTTGTGGACTTAAAA
4904199 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
*
4904226 GGGTGCCACGGAGTTGTGGTCTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904253 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
4904281 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904308 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
**
4904335 GAATGCCACGGAGTTGTGGACTTTAAAA
1 GGGTGCCACGGAGTTGTGGAC-TTAAAA
* *
4904363 GGATGCCACGAAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904390 GGGATGCCACGGAGTTGTGGACTTAAAA
1 GGG-TGCCACGGAGTTGTGGACTTAAAA
4904418 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904445 GGGTGCCACGGAGTTGTGGACTTAAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
* *
4904472 GGGTGCCACGGAGTTGTGGGCTTTAAA
1 GGGTGCCACGGAGTTGTGGACTTAAAA
4904499 G
1 G
4904500 AGGTCACACT
Statistics
Matches: 1000, Mismatches: 54, Indels: 25
0.93 0.05 0.02
Matches are distributed among these distances:
27 675 0.68
28 325 0.32
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.23
Consensus pattern (27 bp):
GGGTGCCACGGAGTTGTGGACTTAAAA
Found at i:4903605 original size:82 final size:81
Alignment explanation
Indices: 4903406--4904499 Score: 1783
Period size: 82 Copynumber: 13.3 Consensus size: 81
4903396 GCTTTGAAAT
* * * *
4903406 GGGTGCCACAGAGTTGTGGATTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCAC
1 GGGTGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCAC
*
4903471 GGAGTTATGGACTTAAAA
64 GGAGTTGTGGACTTAAAA
*
4903489 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
4903554 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
* *
4903570 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCGCG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
4903635 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * *
4903652 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGATGCCGCG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
4903717 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
4903734 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGATGCCACGA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
4903799 AGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAA
4903815 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
4903880 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* * * **
4903897 GGTTGCCACAGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGATATGCCAC
1 GGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCAC
*
4903962 GGAGTTGTGGATTTAAAA
64 GGAGTTGTGGACTTAAAA
* *
4903980 GGGTGTCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACG
4904045 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
4904062 GGGTGCCACGAAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
4904127 AGTTGTGGACTTAAAAA
66 AGTTGTGGACTT-AAAA
* *
4904144 GGGTGCCACGGAGTTGTGGACTTAAAAGAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
4904209 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
*
4904226 GGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
4904291 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
** *
4904308 GGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACG
*
4904373 AAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
4904390 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
4904455 GAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAA
* *
4904472 GGGTGCCACGGAGTTGTGGGCTTTAAAG
1 GGGTGCCACGGAGTTGTGGACTTAAAAG
4904500 AGGTCACACT
Statistics
Matches: 952, Mismatches: 49, Indels: 22
0.93 0.05 0.02
Matches are distributed among these distances:
81 185 0.19
82 618 0.65
83 149 0.16
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.23
Consensus pattern (81 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAA
Found at i:4903605 original size:109 final size:109
Alignment explanation
Indices: 4903406--4904499 Score: 1795
Period size: 109 Copynumber: 10.0 Consensus size: 109
4903396 GCTTTGAAAT
* * * *
4903406 GGGTGCCACAGAGTTGTGGATTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGATGCCAC
1 GGGTGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGTGCCAC
* *
4903471 GGAGTTATGGACTTAAAAGGG-TGCCACGGAGTTGTGGTCTTAAAA
64 GGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
4903516 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
4903581 AGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
* *
4903625 GGGTGCCGCGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACG
*
4903690 GAGTTGTGGACTTAAAA-GGATGCCGCGGAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
* *
4903734 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGATGCCACGA
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
4903799 AGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
66 AGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
* *
4903843 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGTTGCCACAG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
4903908 AGTTGTGGACTTTAAAAGGG-TGCCACAGAGTTGTGGACTTAAAA
66 AGTTGTGGAC-TTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
** * *
4903952 GATATGCCACGGAGTTGTGGATTTAAAAGGGTGTCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
4904017 GAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
* *
4904062 GGGTGCCACGAAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
4904127 AGTTGTGGACTTAAAAAGGG-TGCCACGGAGTTGTGGACTTAAAA
66 AGTTGTGGACTT-AAAAGGGATGCCACGGAGTTGTGGACTTAAAA
* *
4904171 GAGATGCCACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 G-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
*
4904236 GAGTTGTGGTCTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
65 GAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
**
4904281 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGG
1 GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
*
4904346 AGTTGTGGACTTTAAAA-GGATGCCACGAAGTTGTGGACTTAAAA
66 AGTTGTGGAC-TTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
4904390 GGGATGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
1 GGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACG
* *
4904455 GAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGGCTTTAAA
65 GAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
4904499 G
1 G
4904500 AGGTCACACT
Statistics
Matches: 923, Mismatches: 49, Indels: 25
0.93 0.05 0.03
Matches are distributed among these distances:
108 49 0.05
109 549 0.59
110 325 0.35
ACGTcount: A:0.27, C:0.14, G:0.35, T:0.23
Consensus pattern (109 bp):
GGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGG
AGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGACTTAAAA
Found at i:4905822 original size:23 final size:23
Alignment explanation
Indices: 4905774--4905825 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
4905764 CATGTCCTCG
*
4905774 TTTTTTTTATTTTTGTTGTTCCC
1 TTTTTTTTATTTTTGTTGTTCAC
4905797 TTTTTTTTA-TTTTGCTT-TTGCAC
1 TTTTTTTTATTTTTG-TTGTT-CAC
4905820 TTTTTT
1 TTTTTT
4905826 CTTTTCATCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.06, C:0.12, G:0.08, T:0.75
Consensus pattern (23 bp):
TTTTTTTTATTTTTGTTGTTCAC
Found at i:4905824 original size:15 final size:16
Alignment explanation
Indices: 4905806--4905848 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
4905796 CTTTTTTTTA
4905806 TTTTGCTTTTGCA-CT
1 TTTTGCTTTTGCATCT
*
4905821 TTTTTCTTTT-CATCT
1 TTTTGCTTTTGCATCT
4905836 TTTGTGCTTTTGC
1 TTT-TGCTTTTGC
4905849 TTTTGACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 2 0.09
15 14 0.61
16 6 0.26
17 1 0.04
ACGTcount: A:0.05, C:0.19, G:0.12, T:0.65
Consensus pattern (16 bp):
TTTTGCTTTTGCATCT
Found at i:4912968 original size:20 final size:20
Alignment explanation
Indices: 4912921--4912995 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
4912911 AAAAAGACAT
*
4912921 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
4912940 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
4912961 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
4912981 AATGTATCGATACAT
1 AATGTATCGATACAT
4912996 CAGGGTATGA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:4912989 original size:40 final size:39
Alignment explanation
Indices: 4912918--4912995 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
4912908 GGTAAAAAGA
* *
4912918 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
4912957 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
4912996 CAGGGTATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:4913207 original size:2 final size:2
Alignment explanation
Indices: 4913200--4913239 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
4913190 CTACACATAC
* *
4913200 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4913240 TGATTAGAGG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:4913550 original size:49 final size:48
Alignment explanation
Indices: 4913478--4913980 Score: 201
Period size: 44 Copynumber: 10.5 Consensus size: 48
4913468 CAAAAAAATT
**
4913478 TTAAAAATATTTTATATTAAATCTTGAATTAAAATTTAAATAATAATAA
1 TTAAAAATATTTTATATTAAATCTCAAATTAAAATTTAAA-AATAATAA
* **
4913527 TTAAATATATTTTATATTAAATCTCAAATTATTATTTAAAAATAATAAAAA
1 TTAAAAATATTTTATATTAAATCTCAAATTAAAATTTAAAAATAAT---AA
* * * ** * ***
4913578 TTTTAAAATATTTTACATTGAATAGCGAATTGCTATTTAAAAATTAATAAAAA
1 -TTAAAAATATTTTATATTAAATCTCAAATTAAAATTTAAAAA-TAAT---AA
***
4913631 TGTAAAAATATATTTTATATTAAATC-CAAATTTTCTATTTAAAAATAATAAAA
1 T-T-AAAA-ATATTTTATATTAAATCTCAAA-TTAAAATTTAAAAATAAT--AA
* * * * ** *
4913684 CTTAAGAAGTATTTTATATTAAATGTCAAATTACTACTAAAAAAGATAAAAA
1 -TTAA-AAATATTTTATATTAAATCTCAAATTA-AAATTTAAAA-ATAATAA
* * * **
4913736 ATAAAAATTTATTTATATTAAATCTAAAATTACTATTT---AA-AAT-A
1 TTAAAAATAT-TTTATATTAAATCTCAAATTAAAATTTAAAAATAATAA
* **
4913780 GTAAAAA-A--TTATATTAAATCTCAAATTATTATTTAAAATATAATAAAAA
1 TTAAAAATATTTTATATTAAATCTCAAATTAAAATTTAAAA-ATAAT---AA
* * * * *
4913829 TTAAAAAATATTTTATA--AATTC-CTATTTAAAA-ATAATAA-AA-AA
1 TT-AAAAATATTTTATATTAAATCTCAAATTAAAATTTAAAAATAATAA
* **
4913872 -TAAAAATATTTTATATTAAATCTTAAATTACTATTT--AAA-AATAA
1 TTAAAAATATTTTATATTAAATCTCAAATTAAAATTTAAAAATAATAA
* * ** *
4913916 -TAAAAATATTTCATATTAAATCTTAAATTATTATTT--TAA-AA-AA
1 TTAAAAATATTTTATATTAAATCTCAAATTAAAATTTAAAAATAATAA
4913959 TTAAAAATA-TTTATATTAAATC
1 TTAAAAATATTTTATATTAAATC
4913981 CTGAATTACT
Statistics
Matches: 356, Mismatches: 64, Indels: 74
0.72 0.13 0.15
Matches are distributed among these distances:
40 24 0.07
41 14 0.04
42 1 0.00
43 25 0.07
44 61 0.17
45 6 0.02
46 1 0.00
47 3 0.01
48 7 0.02
49 41 0.12
50 16 0.04
51 29 0.08
52 55 0.15
53 31 0.09
54 15 0.04
55 27 0.08
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (48 bp):
TTAAAAATATTTTATATTAAATCTCAAATTAAAATTTAAAAATAATAA
Found at i:4913697 original size:107 final size:103
Alignment explanation
Indices: 4913529--4913785 Score: 274
Period size: 107 Copynumber: 2.5 Consensus size: 103
4913519 AATAATAATT
* *
4913529 AAATATATTTTATATTAAATCTCAAATTAT-TATTTAAAAATAATAAAAATTTTAAAATATTTTA
1 AAATATATTTTATATTAAATC-CAAATTTTCTATTTAAAAATAAT-AAAATCTTAAAATATTTTA
* * * * *
4913593 CATTGAATAG-CGAATTGCTATTTAAAAATTA-ATAAAAATGTAA
64 CATTAAAT-GTCAAATTACTA-CTAAAAA--AGATAAAAA-ATAA
4913636 AAATATATTTTATATTAAATCCAAATTTTCTATTTAAAAATAATAAAA-CTTAAGAAGTATTTTA
1 AAATATATTTTATATTAAATCCAAATTTTCTATTTAAAAATAATAAAATCTTAA-AA-TATTTTA
*
4913700 TATTAAATGTCAAATTACTACTAAAAAAGATAAAAAATAA
64 CATTAAATGTCAAATTACTACTAAAAAAGATAAAAAATAA
* * * * *
4913740 AAATTTA-TTTATATTAAATCTAAAATTACTATTT-AAAATAGTAAAA
1 AAATATATTTTATATTAAATCCAAATTTTCTATTTAAAAATAATAAAA
4913786 AATTATATTA
Statistics
Matches: 132, Mismatches: 13, Indels: 15
0.82 0.08 0.09
Matches are distributed among these distances:
102 11 0.08
103 24 0.18
104 10 0.08
105 11 0.08
106 20 0.15
107 56 0.42
ACGTcount: A:0.52, C:0.05, G:0.04, T:0.39
Consensus pattern (103 bp):
AAATATATTTTATATTAAATCCAAATTTTCTATTTAAAAATAATAAAATCTTAAAATATTTTACA
TTAAATGTCAAATTACTACTAAAAAAGATAAAAAATAA
Found at i:4913704 original size:52 final size:50
Alignment explanation
Indices: 4913515--4914134 Score: 265
Period size: 51 Copynumber: 12.7 Consensus size: 50
4913505 ATTAAAATTT
* *
4913515 AAATAATAATAATTAAATATATTTTATATTAAATCTCAAATTAT-TATTTAA
1 AAATAATAAAAATTAAA-ATATTTTATATTAAATC-CAAATTTTCTATTTAA
* * * * *
4913566 AAATAATAAAAATTTTAAAATATTTTACATTGAATAGCGAA-TTGCTATTTAA
1 AAATAATAAAAA--TTAAAATATTTTATATTAAAT-CCAAATTTTCTATTTAA
4913618 AAATTAATAAAAATGTAAAAATATATTTTATATTAAATCCAAATTTTCTATTTAA
1 AAA-TAATAAAAAT-T--AAA-ATATTTTATATTAAATCCAAATTTTCTATTTAA
* * * *
4913673 AAATAATAAAACTTAAGAAGTATTTTATATTAAATGTCAAA-TTACTA-CTAA
1 AAATAATAAAAATTAA-AA-TATTTTATATTAAAT-CCAAATTTTCTATTTAA
* * * * *
4913724 AAA-AGATAAAAAATAAAAATTTATTTATATTAAATCTAAAATTACTATTT-A
1 AAATA-AT-AAAAATTAAAATAT-TTTATATTAAATCCAAATTTTCTATTTAA
* *
4913775 AAATAGT----A--AAAA-A--TTATATTAAATCTCAAATTAT-TATTTAA
1 AAATAATAAAAATTAAAATATTTTATATTAAATC-CAAATTTTCTATTTAA
** *
4913816 AATATAATAAAAATTAAAA-A----ATATTTTAT--AAA-TTCCTATTTAA
1 AA-ATAATAAAAATTAAAATATTTTATATTAAATCCAAATTTTCTATTTAA
* * *
4913859 AAATAATAAAAAATAAAAATATTTTATATTAAATCTTAAA-TTACTATTTAA
1 AAATAAT-AAAAATTAAAATATTTTATATTAAATC-CAAATTTTCTATTTAA
* * *
4913910 AAATAAT----A--AAAATATTTCATATTAAATCTTAAATTAT-TATTT--
1 AAATAATAAAAATTAAAATATTTTATATTAAATC-CAAATTTTCTATTTAA
* *
4913952 ---T-A-AAAAATTAAAA-ATATTTATATTAAATCCTGAA-TTACTA-TTAA
1 AAATAATAAAAATTAAAATAT-TTTATATTAAATCC-AAATTTTCTATTTAA
* * ** *
4913996 AAGTAATAAAAGTTTTAGAAATATTTTA-ATTAAATCTTGAATTAGT-T-TTTAA
1 AAATAATAAAA--ATTA-AAATATTTTATATTAAATC-CAAATT-TTCTATTTAA
* * *
4914048 AAATAA-AAAAA-TAACATATTTTATATTAAACCCAAAATTAT-TATTTAAA
1 AAATAATAAAAATTAAAATATTTTATATTAAATCC-AAATTTTCTATTT-AA
4914097 AAATAATAAAATATTTTGAAAATATTTTATATTAAATC
1 AAATAATAAAA-A--TT-AAAATATTTTATATTAAATC
4914135 ATGAATTACT
Statistics
Matches: 438, Mismatches: 58, Indels: 142
0.69 0.09 0.22
Matches are distributed among these distances:
38 1 0.00
39 1 0.00
40 17 0.04
41 8 0.02
42 15 0.03
43 42 0.10
44 34 0.08
45 1 0.00
46 10 0.02
47 12 0.03
48 29 0.07
49 12 0.03
50 10 0.02
51 88 0.20
52 76 0.17
53 21 0.05
54 16 0.04
55 45 0.10
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (50 bp):
AAATAATAAAAATTAAAATATTTTATATTAAATCCAAATTTTCTATTTAA
Found at i:4913786 original size:44 final size:43
Alignment explanation
Indices: 4913731--4914006 Score: 210
Period size: 44 Copynumber: 6.3 Consensus size: 43
4913721 TAAAAAAGAT
4913731 AAAA-AATAAAAATTTATTTATATTAAATCTAAAATTACTATTT-
1 AAAATAATAAAAA--TATTTATATTAAATCTAAAATTACTATTTA
* * *
4913774 AAAATAGTAAAAA-A-TTATATTAAATCTCAAATTATTATTTA
1 AAAATAATAAAAATATTTATATTAAATCTAAAATTACTATTTA
** * * * * *
4913815 AAATATAATAAAAAT-TAAAAAAT-ATTTTATAAATTCCTATTTAAA
1 AAA-ATAATAAAAATATTTATATTAAATCTA-AAATTACTATTT--A
*
4913860 AATAATAAAAAATAAAAATATTTTATATTAAATCTTAAATTACTATTTA
1 AA-AAT----AATAAAAATA-TTTATATTAAATCTAAAATTACTATTTA
* *
4913909 AAAATAATAAAAATATTTCATATTAAATCTTAAATTATTATTTTA
1 AAAATAATAAAAATATTT-ATATTAAATCTAAAATTACTA-TTTA
* *
4913954 AAAA-ATTAAAAATATTTATATTAAATCCT-GAATTACTA-TTA
1 AAAATAATAAAAATATTTATATTAAAT-CTAAAATTACTATTTA
*
4913995 AAAGTAATAAAA
1 AAAATAATAAAA
4914007 GTTTTAGAAA
Statistics
Matches: 186, Mismatches: 27, Indels: 41
0.73 0.11 0.16
Matches are distributed among these distances:
40 24 0.13
41 10 0.05
42 18 0.10
43 36 0.19
44 51 0.27
45 13 0.07
46 1 0.01
48 3 0.02
49 12 0.06
51 15 0.08
52 3 0.02
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (43 bp):
AAAATAATAAAAATATTTATATTAAATCTAAAATTACTATTTA
Found at i:4913817 original size:134 final size:138
Alignment explanation
Indices: 4913679--4914060 Score: 335
Period size: 138 Copynumber: 2.8 Consensus size: 138
4913669 TTAAAAATAA
*
4913679 TAAAACTTAAGAAGTATTTTATATTAAATGT-CAAATTACTA-CTAAAAA-AGATAAAAAATAAA
1 TAAAA-TTAA-AAATATTTTATATTAAATGTACAAATTACTATCTAAAAATA-ATAAAAAATAAA
* *
4913741 AATTTATTTATATTAAATCTAAAATTACTATTT-AAAATAGTAAAAA-A-TT-ATATTAAATCTC
63 AATAT-TTTATATTAAATCTAAAATTACTATTTAAAAATAATAAAAATATTTCATATTAAATCTC
4913802 AAATTATTA-TT
127 AAATTATTATTT
* ** * * * * * * *
4913813 TAAAATATAATAAAAATTAAAAAAT-ATTTTATAAATTCCTATTTAAAAATAATAAAAAATAAAA
1 TAAAAT-TAA-AAATATTTTATATTAAATGTACAAATTACTATCTAAAAATAATAAAAAATAAAA
* *
4913877 ATATTTTATATTAAATCTTAAATTACTATTTAAAAATAATAAAAATATTTCATATTAAATCTTAA
64 ATATTTTATATTAAATCTAAAATTACTATTTAAAAATAATAAAAATATTTCATATTAAATCTCAA
4913942 ATTATTATTT
129 ATTATTATTT
* * * **
4913952 TAAAAAATTAAAAATA-TTTATATTAAA--TCCTGAATTACTAT-TAAAAGTAATAAAAGTTTTA
1 T--AAAATTAAAAATATTTTATATTAAATGTAC-AAATTACTATCTAAAAATAATAAAA--AATA
* ** * *
4914013 GAAATATTTTA-ATTAAATCTTGAATTAGTTTTTAAAAATAA-AAAAATA
61 AAAATATTTTATATTAAATCTAAAATTACTATTTAAAAATAATAAAAATA
4914061 ACATATTTTA
Statistics
Matches: 200, Mismatches: 33, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
133 4 0.02
134 50 0.25
135 34 0.17
136 2 0.01
137 23 0.12
138 59 0.29
139 20 0.10
140 3 0.01
141 5 0.03
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (138 bp):
TAAAATTAAAAATATTTTATATTAAATGTACAAATTACTATCTAAAAATAATAAAAAATAAAAAT
ATTTTATATTAAATCTAAAATTACTATTTAAAAATAATAAAAATATTTCATATTAAATCTCAAAT
TATTATTT
Found at i:4913950 original size:25 final size:24
Alignment explanation
Indices: 4913876--4913980 Score: 68
Period size: 21 Copynumber: 4.7 Consensus size: 24
4913866 AAAAAATAAA
4913876 AATATTTTATATTAAATCTTAAATT
1 AATA-TTTATATTAAATCTTAAATT
* **
4913901 ACTATTTA-A--AAATAATAAA--
1 AATATTTATATTAAATCTTAAATT
4913920 AATATTTCATATTAAATCTTAAATT
1 AATATTT-ATATTAAATCTTAAATT
* **
4913945 ATTATTT-TA--AAAAATTAAA--
1 AATATTTATATTAAATCTTAAATT
4913964 AATATTTATATTAAATC
1 AATATTTATATTAAATC
4913981 CTGAATTACT
Statistics
Matches: 59, Mismatches: 12, Indels: 21
0.64 0.13 0.23
Matches are distributed among these distances:
19 12 0.20
20 3 0.05
21 17 0.29
22 3 0.05
23 11 0.19
24 4 0.07
25 9 0.15
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (24 bp):
AATATTTATATTAAATCTTAAATT
Found at i:4913965 original size:94 final size:93
Alignment explanation
Indices: 4913788--4914112 Score: 223
Period size: 94 Copynumber: 3.5 Consensus size: 93
4913778 TAGTAAAAAA
* ***
4913788 TTATATTAAAT-CTCAAATTATTATTTAAAATATAATAAAAATTAAAAAATATT---T-TATAAA
1 TTATATTAAATCCT-AAATTACTATTTAAAA-ATAATAAAAA-TATTTAATATTAAATCT-TAAA
* *
4913848 TTCCTATTTAAAAATAATAAAAAATAAAAATATT
62 TTACTATTTTAAAA-AAT-AAAAATAAAAATATT
* * *
4913882 TTATATTAAATCTTAAATTACTATTTAAAAATAATAAAAATATTTCATATTAAATCTTAAATTAT
1 TTATATTAAATCCTAAATTACTATTTAAAAATAATAAAAATATTTAATATTAAATCTTAAATTAC
4913947 TATTTTAAAAAAT-----TAAAAATA-T
66 TATTTTAAAAAATAAAAATAAAAATATT
* * * *
4913969 TTATATTAAATCCTGAATTACTATTAAAAGTAATAAAAGTTTTAGAAATATTTTA-ATTAAATCT
1 TTATATTAAATCCTAAATTACTATTTAAA--AAT--AA----TAAAAATATTTAATATTAAATCT
* *
4914033 TGAATTAGT-TTTT-AAAAATAAAAA-AATAACATATT
58 TAAATTACTATTTTAAAAAATAAAAATAA-AA-ATATT
* * *
4914068 TTATATTAAACCCAAAATTATTATTTAAAAAATAAT-AAAATATTT
1 TTATATTAAATCCTAAATTACTATTT-AAAAATAATAAAAATATTT
4914113 TGAAAATATT
Statistics
Matches: 187, Mismatches: 22, Indels: 47
0.73 0.09 0.18
Matches are distributed among these distances:
87 27 0.14
88 8 0.04
89 3 0.02
91 10 0.05
92 14 0.07
93 14 0.07
94 45 0.24
95 28 0.15
96 5 0.03
97 2 0.01
98 6 0.03
99 22 0.12
100 3 0.02
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (93 bp):
TTATATTAAATCCTAAATTACTATTTAAAAATAATAAAAATATTTAATATTAAATCTTAAATTAC
TATTTTAAAAAATAAAAATAAAAATATT
Found at i:4914296 original size:22 final size:22
Alignment explanation
Indices: 4914237--4914298 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
4914227 AGGTCAGTTC
4914237 ATTA-AAAT-AATATACATATG
1 ATTATAAATAAATATACATATG
* *
4914257 ATTATAAATAGATGTACATATG
1 ATTATAAATAAATATACATATG
*
4914279 ACTT-TAACTAAATATACATA
1 A-TTATAAATAAATATACATA
4914299 AAACTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 4 0.12
21 4 0.12
22 24 0.71
23 2 0.06
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.35
Consensus pattern (22 bp):
ATTATAAATAAATATACATATG
Found at i:4914619 original size:22 final size:22
Alignment explanation
Indices: 4914547--4914622 Score: 100
Period size: 22 Copynumber: 3.5 Consensus size: 22
4914537 AATTGAATAT
* *
4914547 ATATGACTATAACTAAATGTAC
1 ATATGACTTTAACTAAATATAC
*
4914569 ATAT-AATTATAACTAAATATAC
1 ATATGACTT-TAACTAAATATAC
*
4914591 ATATGACTTTAACAAAATATAC
1 ATATGACTTTAACTAAATATAC
4914613 ATATGACTTT
1 ATATGACTTT
4914623 TTATCGAGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 2 0.04
22 42 0.89
23 3 0.06
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.36
Consensus pattern (22 bp):
ATATGACTTTAACTAAATATAC
Found at i:4914986 original size:51 final size:51
Alignment explanation
Indices: 4914814--4915176 Score: 341
Period size: 51 Copynumber: 7.1 Consensus size: 51
4914804 CCCAGTACAT
* * * * *
4914814 ATATAAAATATTTTTGAAAGTTTTTACTATTTTAAATAGTACTTTAAAATTTA
1 ATATAAAATATTTTT-TAATTTTTTATTATTTTAAATAGTA-ATTAAGATTTA
* * * * *
4914867 ATATAAAATATTTTTTTTATTTTTTATTGTTTTAAAAAAATAGTTCAAGATTTA
1 ATATAAAATA-TTTTTTAATTTTTTATTATTTT-AAATAGTAATT-AAGATTTA
*
4914921 ATATAAAATA-TTTTTAATTTTTTATTATTTTAAATAGTAATTACGATTTA
1 ATATAAAATATTTTTTAATTTTTTATTATTTTAAATAGTAATTAAGATTTA
* ** * * *
4914971 TTATAAAATATTTTTTAATTTTACATT-TTTTAAAAAGTAATTCAGTATTTG
1 ATATAAAATATTTTTTAATTTTTTATTATTTTAAATAGTAATTAAG-ATTTA
* * * *
4915022 ATAGAAAATATTTTTTAGTTTTTTAATT-TTTTAAATAATAATTAAAAATTTA
1 ATATAAAATATTTTTTAATTTTTT-ATTATTTTAAATAGTAATT-AAGATTTA
* *
4915074 ATA-AAAATA-TTTTTAA-TTTTTATTA-TTTAAATAGTGATTTAGATTTA
1 ATATAAAATATTTTTTAATTTTTTATTATTTTAAATAGTAATTAAGATTTA
*
4915121 ATATAAAA-ATATTTTTAA-TTTTTATTATTTTAAA-AGTAATTCAGGATTTA
1 ATATAAAATAT-TTTTTAATTTTTTATTATTTTAAATAGTAATT-AAGATTTA
4915171 CATATA
1 -ATATA
4915177 CAACATATAT
Statistics
Matches: 256, Mismatches: 40, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
47 10 0.04
48 19 0.07
49 27 0.11
50 49 0.19
51 56 0.22
52 42 0.16
53 25 0.10
54 28 0.11
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (51 bp):
ATATAAAATATTTTTTAATTTTTTATTATTTTAAATAGTAATTAAGATTTA
Found at i:4915256 original size:21 final size:24
Alignment explanation
Indices: 4915207--4915256 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
4915197 AGTGAATTCC
*
4915207 TTATTTCTTGTTATTGAATTTATA
1 TTATTTCTTATTATTGAATTTATA
*
4915231 TTATTTCTTATTATTTAATTTATA
1 TTATTTCTTATTATTGAATTTATA
4915255 TT
1 TT
4915257 GTATAATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.66
Consensus pattern (24 bp):
TTATTTCTTATTATTGAATTTATA
Found at i:4915353 original size:12 final size:12
Alignment explanation
Indices: 4915304--4915420 Score: 59
Period size: 12 Copynumber: 9.6 Consensus size: 12
4915294 TCTATTTCTA
*
4915304 TTATATATATAT
1 TTATATATTTAT
4915316 TAATATATAGTTTAAT
1 T--TATATA-TTT-AT
4915332 TTA-ATAATTTAT
1 TTATAT-ATTTAT
4915344 TTATATATTT-T
1 TTATATATTTAT
*
4915355 TTAT-T-TATA-
1 TTATATATTTAT
*
4915364 ATATAT-TTTAT
1 TTATATATTTAT
*
4915375 ATTATATA-ATAT
1 -TTATATATTTAT
4915387 ATTATATATTATAT
1 -TTATATATT-TAT
*
4915401 ATTATATTTTTAT
1 -TTATATATTTAT
4915414 TTATATA
1 TTATATA
4915421 ATTCTAATAC
Statistics
Matches: 83, Mismatches: 9, Indels: 26
0.70 0.08 0.22
Matches are distributed among these distances:
9 5 0.06
10 5 0.06
11 5 0.06
12 32 0.39
13 10 0.12
14 21 0.25
15 2 0.02
16 3 0.04
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (12 bp):
TTATATATTTAT
Found at i:4915362 original size:19 final size:19
Alignment explanation
Indices: 4915338--4915420 Score: 93
Period size: 19 Copynumber: 4.5 Consensus size: 19
4915328 TAATTTAATA
* *
4915338 ATTTATTTATATATTTTTT
1 ATTTATATATATATTTTAT
4915357 ATTTATA-ATATATTTTAT
1 ATTTATATATATATTTTAT
*
4915375 A-TTATATA-ATATATTAT
1 ATTTATATATATATTTTAT
4915392 ATATTATATATTATATTTT-T
1 AT-TTATATA-TATATTTTAT
4915412 ATTTATATA
1 ATTTATATA
4915421 ATTCTAATAC
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
17 14 0.25
18 12 0.22
19 20 0.36
20 3 0.05
21 6 0.11
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTATATATATATTTTAT
Found at i:4915419 original size:26 final size:26
Alignment explanation
Indices: 4915284--4915420 Score: 79
Period size: 26 Copynumber: 5.1 Consensus size: 26
4915274 ATATTAATTC
* *
4915284 TATTATATATTCTATTTCTA-TTATA
1 TATTATATATTATATTTTTATTTATA
* *
4915309 TA-TATATTAATATATAGTTTAATTTA-A
1 TATTATA-T-AT-TATATTTTTATTTATA
*
4915336 TAATT-TATTTATATATTTTTTATTTATA
1 T-ATTATATAT-TATA-TTTTTATTTATA
*
4915364 -A-TATATTTTATATTATATAATATATTATA
1 TATTATATATTATATT-T-T--TAT-TTATA
4915393 TATTATATATTATATTTTTATTTATA
1 TATTATATATTATATTTTTATTTATA
4915419 TA
1 TA
4915421 ATTCTAATAC
Statistics
Matches: 88, Mismatches: 8, Indels: 31
0.69 0.06 0.24
Matches are distributed among these distances:
24 6 0.07
25 9 0.10
26 22 0.25
27 20 0.23
28 10 0.11
29 7 0.08
30 2 0.02
31 12 0.14
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.60
Consensus pattern (26 bp):
TATTATATATTATATTTTTATTTATA
Found at i:4915478 original size:20 final size:19
Alignment explanation
Indices: 4915435--4915479 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
4915425 TAATACTTCT
4915435 ATTTCATTTATCATTTTCA
1 ATTTCATTTATCATTTTCA
* * *
4915454 TTTTCATTTTTTCATTTTGA
1 ATTTCA-TTTATCATTTTCA
4915474 ATTTCA
1 ATTTCA
4915480 ATCCAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.22, C:0.13, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTCATTTATCATTTTCA
Done.